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- <?php
- /**
- * @file
- * Describes the chado tables in version 1.2
- */
- /**
- * @defgroup tripal_schema_v1_2_api Chado v1.2 Schema
- * @ingroup tripal_chado_schema_api
- * @{
- * Provides an application programming interface (API) for describing Chado
- * tables. This API consists of a set of functions, one for each table in
- * Chado. Each function simply returns a Drupal style array that defines the
- * table.
- *
- * Because Drupal 6 does not handle foreign key (FK) relationships, which are
- * needed to for Tripal Views, they have been added to the schema
- * defintitions below.
- *
- * The functions provided in this documentation should not be called as is, but
- * if you need the Drupal-style array definition for any table, use the
- * following function call:
- *
- * $table_desc = chado_get_schema($table)
- *
- * where the variable $table contains the name of the table you want to
- * retireve. The chado_get_schema function determines the appropriate version
- * of Chado and uses the Drupal hook infrastructure to call the appropriate
- * hook function to retrieve the table schema.
- *
- * If you need to augment these schema definitions within your own module, you
- * need to implement the hook_chado_schema_v1_2_[table name]() hook where
- * [table name] is the name of the chado table whose schema definition you
- * want to augment.
- * @}
- */
- /**
- * Implements hook_chado_schema_v1_2_acquisition()
- * Purpose: To describe the structure of 'acquisition' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'acquisition' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_acquisition() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'acquisition_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'assay_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'protocol_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'channel_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'acquisitiondate' => [
- 'description' => '',
- 'type' => 'datetime',
- 'not null' => FALSE,
- 'default' => 'now()',
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'uri' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'acquisition_id',
- ],
- 'unique keys' => [
- 'acquisition_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- 'acquisition_idx1' => [
- 0 => 'assay_id',
- ],
- 'acquisition_idx2' => [
- 0 => 'protocol_id',
- ],
- 'acquisition_idx3' => [
- 0 => 'channel_id',
- ],
- ],
- 'foreign keys' => [
- 'protocol' => [
- 'table' => 'protocol',
- 'columns' => [
- 'protocol_id' => 'protocol_id',
- ],
- ],
- 'assay' => [
- 'table' => 'assay',
- 'columns' => [
- 'assay_id' => 'assay_id',
- ],
- ],
- 'channel' => [
- 'table' => 'channel',
- 'columns' => [
- 'channel_id' => 'channel_id',
- ],
- ],
- ],
- 'table' => 'acquisition',
- 'referring_tables' => [
- 0 => 'acquisition_relationship',
- 2 => 'acquisitionprop',
- 3 => 'quantification',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_acquisition_relationship()
- * Purpose: To describe the structure of 'acquisition_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'acquisition_relationship' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_acquisition_relationship() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'acquisition_relationship_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'subject_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'acquisition_relationship_id',
- ],
- 'unique keys' => [
- 'acquisition_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'acquisition_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'acquisition_relationship_idx2' => [
- 0 => 'type_id',
- ],
- 'acquisition_relationship_idx3' => [
- 0 => 'object_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'acquisition' => [
- 'table' => 'acquisition',
- 'columns' => [
- 'subject_id' => 'acquisition_id',
- 'object_id' => 'acquisition_id',
- ],
- ],
- ],
- 'table' => 'acquisition_relationship',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_acquisitionprop()
- * Purpose: To describe the structure of 'acquisitionprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'acquisitionprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_acquisitionprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'acquisitionprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'acquisition_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'acquisitionprop_id',
- ],
- 'unique keys' => [
- 'acquisitionprop_c1' => [
- 0 => 'acquisition_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'acquisitionprop_idx1' => [
- 0 => 'acquisition_id',
- ],
- 'acquisitionprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'acquisition' => [
- 'table' => 'acquisition',
- 'columns' => [
- 'acquisition_id' => 'acquisition_id',
- ],
- ],
- ],
- 'table' => 'acquisitionprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_analysis()
- * Purpose: To describe the structure of 'analysis' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'analysis' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_analysis() {
- $description = [
- 'referring_tables' => [
- 0 => 'analysisfeature',
- 1 => 'analysisprop',
- 2 => 'phylotree',
- 3 => 'quantification',
- ],
- 'description' => '',
- 'fields' => [
- 'analysis_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'program' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- 'programversion' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- 'algorithm' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'sourcename' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'sourceversion' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'sourceuri' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'timeexecuted' => [
- 'description' => '',
- 'type' => 'datetime',
- 'not null' => TRUE,
- 'default' => 'now()',
- ],
- ],
- 'primary key' => [
- 0 => 'analysis_id',
- ],
- 'unique keys' => [
- 'analysis_c1' => [
- 0 => 'program',
- 1 => 'programversion',
- 2 => 'sourcename',
- ],
- ],
- 'foreign keys' => [
- ],
- 'table' => 'analysis',
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_analysisfeature()
- * Purpose: To describe the structure of 'analysisfeature' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'analysisfeature' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_analysisfeature() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'analysisfeature_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'analysis_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'rawscore' => [
- 'description' => '',
- 'type' => 'float',
- 'size' => 'big',
- 'not null' => FALSE,
- ],
- 'normscore' => [
- 'description' => '',
- 'type' => 'float',
- 'size' => 'big',
- 'not null' => FALSE,
- ],
- 'significance' => [
- 'description' => '',
- 'type' => 'float',
- 'size' => 'big',
- 'not null' => FALSE,
- ],
- 'identity' => [
- 'description' => '',
- 'type' => 'float',
- 'size' => 'big',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'analysisfeature_id',
- ],
- 'unique keys' => [
- 'analysisfeature_c1' => [
- 0 => 'feature_id',
- 1 => 'analysis_id',
- ],
- ],
- 'indexes' => [
- 'analysisfeature_idx1' => [
- 0 => 'feature_id',
- ],
- 'analysisfeature_idx2' => [
- 0 => 'analysis_id',
- ],
- ],
- 'foreign keys' => [
- 'analysis' => [
- 'table' => 'analysis',
- 'columns' => [
- 'analysis_id' => 'analysis_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- ],
- 'table' => 'analysisfeature',
- 'referring_tables' => [
- 0 => 'analysisfeatureprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_analysisfeatureprop()
- * Purpose: To describe the structure of 'analysisfeatureprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'analysisfeatureprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_analysisfeatureprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'analysisfeatureprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'analysisfeature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'analysisfeatureprop_id',
- ],
- 'unique keys' => [
- 'analysisfeature_id_type_id_rank' => [
- 0 => 'analysisfeature_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'analysisfeature' => [
- 'table' => 'analysisfeature',
- 'columns' => [
- 'analysisfeature_id' => 'analysisfeature_id',
- ],
- ],
- ],
- 'table' => 'analysisfeatureprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_analysisprop()
- * Purpose: To describe the structure of 'analysisprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'analysisprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_analysisprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'analysisprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'analysis_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'analysisprop_id',
- ],
- 'unique keys' => [
- 'analysisprop_c1' => [
- 0 => 'analysis_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'analysisprop_idx1' => [
- 0 => 'analysis_id',
- ],
- 'analysisprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'analysis' => [
- 'table' => 'analysis',
- 'columns' => [
- 'analysis_id' => 'analysis_id',
- ],
- ],
- ],
- 'table' => 'analysisprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_arraydesign()
- * Purpose: To describe the structure of 'arraydesign' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'arraydesign' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_arraydesign() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'arraydesign_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'manufacturer_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'platformtype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'substratetype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'protocol_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'version' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'array_dimensions' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'element_dimensions' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'num_of_elements' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'num_array_columns' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'num_array_rows' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'num_grid_columns' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'num_grid_rows' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'num_sub_columns' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'num_sub_rows' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'arraydesign_id',
- ],
- 'unique keys' => [
- 'arraydesign_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- 'arraydesign_idx1' => [
- 0 => 'manufacturer_id',
- ],
- 'arraydesign_idx2' => [
- 0 => 'platformtype_id',
- ],
- 'arraydesign_idx3' => [
- 0 => 'substratetype_id',
- ],
- 'arraydesign_idx4' => [
- 0 => 'protocol_id',
- ],
- 'arraydesign_idx5' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'platformtype_id' => 'cvterm_id',
- 'substratetype_id' => 'cvterm_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'manufacturer_id' => 'contact_id',
- ],
- ],
- 'protocol' => [
- 'table' => 'protocol',
- 'columns' => [
- 'protocol_id' => 'protocol_id',
- ],
- ],
- ],
- 'table' => 'arraydesign',
- 'referring_tables' => [
- 0 => 'arraydesignprop',
- 1 => 'assay',
- 2 => 'element',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_arraydesignprop()
- * Purpose: To describe the structure of 'arraydesignprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'arraydesignprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_arraydesignprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'arraydesignprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'arraydesign_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'arraydesignprop_id',
- ],
- 'unique keys' => [
- 'arraydesignprop_c1' => [
- 0 => 'arraydesign_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'arraydesignprop_idx1' => [
- 0 => 'arraydesign_id',
- ],
- 'arraydesignprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'arraydesign' => [
- 'table' => 'arraydesign',
- 'columns' => [
- 'arraydesign_id' => 'arraydesign_id',
- ],
- ],
- ],
- 'table' => 'arraydesignprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_assay()
- * Purpose: To describe the structure of 'assay' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'assay' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_assay() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'assay_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'arraydesign_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'protocol_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'assaydate' => [
- 'description' => '',
- 'type' => 'datetime',
- 'not null' => FALSE,
- 'default' => 'now()',
- ],
- 'arrayidentifier' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'arraybatchidentifier' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'operator_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'assay_id',
- ],
- 'unique keys' => [
- 'assay_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- 'assay_idx1' => [
- 0 => 'arraydesign_id',
- ],
- 'assay_idx2' => [
- 0 => 'protocol_id',
- ],
- 'assay_idx3' => [
- 0 => 'operator_id',
- ],
- 'assay_idx4' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'operator_id' => 'contact_id',
- ],
- ],
- 'arraydesign' => [
- 'table' => 'arraydesign',
- 'columns' => [
- 'arraydesign_id' => 'arraydesign_id',
- ],
- ],
- 'protocol' => [
- 'table' => 'protocol',
- 'columns' => [
- 'protocol_id' => 'protocol_id',
- ],
- ],
- ],
- 'table' => 'assay',
- 'referring_tables' => [
- 0 => 'acquisition',
- 1 => 'assay_biomaterial',
- 2 => 'assay_project',
- 3 => 'assayprop',
- 4 => 'control',
- 5 => 'study_assay',
- 6 => 'studyfactorvalue',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_assay_biomaterial()
- * Purpose: To describe the structure of 'assay_biomaterial' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'assay_biomaterial' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_assay_biomaterial() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'assay_biomaterial_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'assay_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'biomaterial_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'channel_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'assay_biomaterial_id',
- ],
- 'unique keys' => [
- 'assay_biomaterial_c1' => [
- 0 => 'assay_id',
- 1 => 'biomaterial_id',
- 2 => 'channel_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'assay_biomaterial_idx1' => [
- 0 => 'assay_id',
- ],
- 'assay_biomaterial_idx2' => [
- 0 => 'biomaterial_id',
- ],
- 'assay_biomaterial_idx3' => [
- 0 => 'channel_id',
- ],
- ],
- 'foreign keys' => [
- 'assay' => [
- 'table' => 'assay',
- 'columns' => [
- 'assay_id' => 'assay_id',
- ],
- ],
- 'biomaterial' => [
- 'table' => 'biomaterial',
- 'columns' => [
- 'biomaterial_id' => 'biomaterial_id',
- ],
- ],
- 'channel' => [
- 'table' => 'channel',
- 'columns' => [
- 'channel_id' => 'channel_id',
- ],
- ],
- ],
- 'table' => 'assay_biomaterial',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_assay_project()
- * Purpose: To describe the structure of 'assay_project' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'assay_project' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_assay_project() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'assay_project_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'assay_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'project_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'assay_project_id',
- ],
- 'unique keys' => [
- 'assay_project_c1' => [
- 0 => 'assay_id',
- 1 => 'project_id',
- ],
- ],
- 'indexes' => [
- 'assay_project_idx1' => [
- 0 => 'assay_id',
- ],
- 'assay_project_idx2' => [
- 0 => 'project_id',
- ],
- ],
- 'foreign keys' => [
- 'project' => [
- 'table' => 'project',
- 'columns' => [
- 'project_id' => 'project_id',
- ],
- ],
- 'assay' => [
- 'table' => 'assay',
- 'columns' => [
- 'assay_id' => 'assay_id',
- ],
- ],
- ],
- 'table' => 'assay_project',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_assayprop()
- * Purpose: To describe the structure of 'assayprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'assayprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_assayprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'assayprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'assay_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'assayprop_id',
- ],
- 'unique keys' => [
- 'assayprop_c1' => [
- 0 => 'assay_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'assayprop_idx1' => [
- 0 => 'assay_id',
- ],
- 'assayprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'assay' => [
- 'table' => 'assay',
- 'columns' => [
- 'assay_id' => 'assay_id',
- ],
- ],
- ],
- 'table' => 'assayprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_biomaterial()
- * Purpose: To describe the structure of 'biomaterial' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'biomaterial' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_biomaterial() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'biomaterial_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'taxon_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'biosourceprovider_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'biomaterial_id',
- ],
- 'unique keys' => [
- 'biomaterial_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- 'biomaterial_idx1' => [
- 0 => 'taxon_id',
- ],
- 'biomaterial_idx2' => [
- 0 => 'biosourceprovider_id',
- ],
- 'biomaterial_idx3' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'taxon_id' => 'organism_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'biosourceprovider_id' => 'contact_id',
- ],
- ],
- ],
- 'table' => 'biomaterial',
- 'referring_tables' => [
- 0 => 'assay_biomaterial',
- 1 => 'biomaterial_dbxref',
- 2 => 'biomaterial_relationship',
- 4 => 'biomaterial_treatment',
- 5 => 'biomaterialprop',
- 6 => 'treatment',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_biomaterial_dbxref()
- * Purpose: To describe the structure of 'biomaterial_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'biomaterial_dbxref' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_biomaterial_dbxref() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'biomaterial_dbxref_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'biomaterial_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'biomaterial_dbxref_id',
- ],
- 'unique keys' => [
- 'biomaterial_dbxref_c1' => [
- 0 => 'biomaterial_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'biomaterial_dbxref_idx1' => [
- 0 => 'biomaterial_id',
- ],
- 'biomaterial_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'biomaterial' => [
- 'table' => 'biomaterial',
- 'columns' => [
- 'biomaterial_id' => 'biomaterial_id',
- ],
- ],
- ],
- 'table' => 'biomaterial_dbxref',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_biomaterial_relationship()
- * Purpose: To describe the structure of 'biomaterial_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'biomaterial_relationship' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_biomaterial_relationship() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'biomaterial_relationship_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'subject_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'biomaterial_relationship_id',
- ],
- 'unique keys' => [
- 'biomaterial_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'biomaterial_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'biomaterial_relationship_idx2' => [
- 0 => 'object_id',
- ],
- 'biomaterial_relationship_idx3' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'biomaterial' => [
- 'table' => 'biomaterial',
- 'columns' => [
- 'subject_id' => 'biomaterial_id',
- 'object_id' => 'biomaterial_id',
- ],
- ],
- ],
- 'table' => 'biomaterial_relationship',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_biomaterial_treatment()
- * Purpose: To describe the structure of 'biomaterial_treatment' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'biomaterial_treatment' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_biomaterial_treatment() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'biomaterial_treatment_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'biomaterial_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'treatment_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'unittype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'float',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'biomaterial_treatment_id',
- ],
- 'unique keys' => [
- 'biomaterial_treatment_c1' => [
- 0 => 'biomaterial_id',
- 1 => 'treatment_id',
- ],
- ],
- 'indexes' => [
- 'biomaterial_treatment_idx1' => [
- 0 => 'biomaterial_id',
- ],
- 'biomaterial_treatment_idx2' => [
- 0 => 'treatment_id',
- ],
- 'biomaterial_treatment_idx3' => [
- 0 => 'unittype_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'unittype_id' => 'cvterm_id',
- ],
- ],
- 'biomaterial' => [
- 'table' => 'biomaterial',
- 'columns' => [
- 'biomaterial_id' => 'biomaterial_id',
- ],
- ],
- 'treatment' => [
- 'table' => 'treatment',
- 'columns' => [
- 'treatment_id' => 'treatment_id',
- ],
- ],
- ],
- 'table' => 'biomaterial_treatment',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_biomaterialprop()
- * Purpose: To describe the structure of 'biomaterialprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'biomaterialprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_biomaterialprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'biomaterialprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'biomaterial_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'biomaterialprop_id',
- ],
- 'unique keys' => [
- 'biomaterialprop_c1' => [
- 0 => 'biomaterial_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'biomaterialprop_idx1' => [
- 0 => 'biomaterial_id',
- ],
- 'biomaterialprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'biomaterial' => [
- 'table' => 'biomaterial',
- 'columns' => [
- 'biomaterial_id' => 'biomaterial_id',
- ],
- ],
- ],
- 'table' => 'biomaterialprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cell_line()
- * Purpose: To describe the structure of 'cell_line' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cell_line() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cell_line_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'uniquename' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- 'organism_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'timeaccessioned' => [
- 'description' => '',
- 'type' => 'datetime',
- 'not null' => TRUE,
- 'default' => 'now()',
- ],
- 'timelastmodified' => [
- 'description' => '',
- 'type' => 'datetime',
- 'not null' => TRUE,
- 'default' => 'now()',
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_id',
- ],
- 'unique keys' => [
- 'cell_line_c1' => [
- 0 => 'uniquename',
- 1 => 'organism_id',
- ],
- ],
- 'foreign keys' => [
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- ],
- 'table' => 'cell_line',
- 'referring_tables' => [
- 0 => 'cell_line_cvterm',
- 1 => 'cell_line_dbxref',
- 2 => 'cell_line_feature',
- 3 => 'cell_line_library',
- 4 => 'cell_line_pub',
- 5 => 'cell_line_relationship',
- 7 => 'cell_line_synonym',
- 8 => 'cell_lineprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cell_line_cvterm()
- * Purpose: To describe the structure of 'cell_line_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_cvterm' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cell_line_cvterm() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cell_line_cvterm_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'cell_line_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_cvterm_id',
- ],
- 'unique keys' => [
- 'cell_line_cvterm_c1' => [
- 0 => 'cell_line_id',
- 1 => 'cvterm_id',
- 2 => 'pub_id',
- 3 => 'rank',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'cell_line_id' => 'cell_line_id',
- ],
- ],
- ],
- 'table' => 'cell_line_cvterm',
- 'referring_tables' => [
- 0 => 'cell_line_cvtermprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cell_line_cvtermprop()
- * Purpose: To describe the structure of 'cell_line_cvtermprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_cvtermprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cell_line_cvtermprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cell_line_cvtermprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'cell_line_cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_cvtermprop_id',
- ],
- 'unique keys' => [
- 'cell_line_cvtermprop_c1' => [
- 0 => 'cell_line_cvterm_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'cell_line_cvterm' => [
- 'table' => 'cell_line_cvterm',
- 'columns' => [
- 'cell_line_cvterm_id' => 'cell_line_cvterm_id',
- ],
- ],
- ],
- 'table' => 'cell_line_cvtermprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cell_line_dbxref()
- * Purpose: To describe the structure of 'cell_line_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_dbxref' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cell_line_dbxref() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cell_line_dbxref_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'cell_line_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_current' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'true',
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_dbxref_id',
- ],
- 'unique keys' => [
- 'cell_line_dbxref_c1' => [
- 0 => 'cell_line_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'cell_line_id' => 'cell_line_id',
- ],
- ],
- ],
- 'table' => 'cell_line_dbxref',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cell_line_feature()
- * Purpose: To describe the structure of 'cell_line_feature' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_feature' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cell_line_feature() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cell_line_feature_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'cell_line_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_feature_id',
- ],
- 'unique keys' => [
- 'cell_line_feature_c1' => [
- 0 => 'cell_line_id',
- 1 => 'feature_id',
- 2 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'cell_line_id' => 'cell_line_id',
- ],
- ],
- ],
- 'table' => 'cell_line_feature',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cell_line_library()
- * Purpose: To describe the structure of 'cell_line_library' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_library' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cell_line_library() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cell_line_library_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'cell_line_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'library_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_library_id',
- ],
- 'unique keys' => [
- 'cell_line_library_c1' => [
- 0 => 'cell_line_id',
- 1 => 'library_id',
- 2 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'library' => [
- 'table' => 'library',
- 'columns' => [
- 'library_id' => 'library_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'cell_line_id' => 'cell_line_id',
- ],
- ],
- ],
- 'table' => 'cell_line_library',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cell_line_pub()
- * Purpose: To describe the structure of 'cell_line_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cell_line_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cell_line_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'cell_line_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_pub_id',
- ],
- 'unique keys' => [
- 'cell_line_pub_c1' => [
- 0 => 'cell_line_id',
- 1 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'cell_line_id' => 'cell_line_id',
- ],
- ],
- ],
- 'table' => 'cell_line_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cell_line_relationship()
- * Purpose: To describe the structure of 'cell_line_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_relationship' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cell_line_relationship() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cell_line_relationship_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'subject_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_relationship_id',
- ],
- 'unique keys' => [
- 'cell_line_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'subject_id' => 'cell_line_id',
- 'object_id' => 'cell_line_id',
- ],
- ],
- ],
- 'table' => 'cell_line_relationship',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cell_line_synonym()
- * Purpose: To describe the structure of 'cell_line_synonym' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_synonym' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cell_line_synonym() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cell_line_synonym_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'cell_line_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'synonym_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_current' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'false',
- ],
- 'is_internal' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'false',
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_synonym_id',
- ],
- 'unique keys' => [
- 'cell_line_synonym_c1' => [
- 0 => 'synonym_id',
- 1 => 'cell_line_id',
- 2 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'synonym' => [
- 'table' => 'synonym',
- 'columns' => [
- 'synonym_id' => 'synonym_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'cell_line_id' => 'cell_line_id',
- ],
- ],
- ],
- 'table' => 'cell_line_synonym',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cell_lineprop()
- * Purpose: To describe the structure of 'cell_lineprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_lineprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cell_lineprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cell_lineprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'cell_line_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'cell_lineprop_id',
- ],
- 'unique keys' => [
- 'cell_lineprop_c1' => [
- 0 => 'cell_line_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'cell_line_id' => 'cell_line_id',
- ],
- ],
- ],
- 'table' => 'cell_lineprop',
- 'referring_tables' => [
- 0 => 'cell_lineprop_pub',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cell_lineprop_pub()
- * Purpose: To describe the structure of 'cell_lineprop_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_lineprop_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cell_lineprop_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cell_lineprop_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'cell_lineprop_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'cell_lineprop_pub_id',
- ],
- 'unique keys' => [
- 'cell_lineprop_pub_c1' => [
- 0 => 'cell_lineprop_id',
- 1 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'cell_lineprop' => [
- 'table' => 'cell_lineprop',
- 'columns' => [
- 'cell_lineprop_id' => 'cell_lineprop_id',
- ],
- ],
- ],
- 'table' => 'cell_lineprop_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_chadoprop()
- * Purpose: To describe the structure of 'chadoprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'chadoprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_chadoprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'chadoprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'chadoprop_id',
- ],
- 'unique keys' => [
- 'chadoprop_c1' => [
- 0 => 'type_id',
- 1 => 'rank',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- 'table' => 'chadoprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_channel()
- * Purpose: To describe the structure of 'channel' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'channel' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_channel() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'channel_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'definition' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'channel_id',
- ],
- 'unique keys' => [
- 'channel_c1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- ],
- 'table' => 'channel',
- 'referring_tables' => [
- 0 => 'acquisition',
- 1 => 'assay_biomaterial',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_contact()
- * Purpose: To describe the structure of 'contact' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'contact' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_contact() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'contact_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'contact_id',
- ],
- 'unique keys' => [
- 'contact_c1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- 'table' => 'contact',
- 'referring_tables' => [
- 0 => 'arraydesign',
- 1 => 'assay',
- 2 => 'biomaterial',
- 3 => 'contact_relationship',
- 5 => 'nd_experiment_contact',
- 6 => 'project_contact',
- 14 => 'quantification',
- 15 => 'stockcollection',
- 16 => 'study',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_contact_relationship()
- * Purpose: To describe the structure of 'contact_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'contact_relationship' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_contact_relationship() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'contact_relationship_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'subject_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'contact_relationship_id',
- ],
- 'unique keys' => [
- 'contact_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'contact_relationship_idx1' => [
- 0 => 'type_id',
- ],
- 'contact_relationship_idx2' => [
- 0 => 'subject_id',
- ],
- 'contact_relationship_idx3' => [
- 0 => 'object_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'subject_id' => 'contact_id',
- 'object_id' => 'contact_id',
- ],
- ],
- ],
- 'table' => 'contact_relationship',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_control()
- * Purpose: To describe the structure of 'control' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'control' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_control() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'control_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'assay_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'tableinfo_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'row_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'control_id',
- ],
- 'unique keys' => [],
- 'indexes' => [
- 'control_idx1' => [
- 0 => 'type_id',
- ],
- 'control_idx2' => [
- 0 => 'assay_id',
- ],
- 'control_idx3' => [
- 0 => 'tableinfo_id',
- ],
- 'control_idx4' => [
- 0 => 'row_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'tableinfo' => [
- 'table' => 'tableinfo',
- 'columns' => [
- 'tableinfo_id' => 'tableinfo_id',
- ],
- ],
- 'assay' => [
- 'table' => 'assay',
- 'columns' => [
- 'assay_id' => 'assay_id',
- ],
- ],
- ],
- 'table' => 'control',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cv()
- * Purpose: To describe the structure of 'cv' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cv' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cv() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cv_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- 'definition' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'cv_id',
- ],
- 'unique keys' => [
- 'cv_c1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- ],
- 'table' => 'cv',
- 'referring_tables' => [
- 0 => 'cvprop',
- 1 => 'cvterm',
- 2 => 'cvtermpath',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cvprop()
- * Purpose: To describe the structure of 'cvprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cvprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cvprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cvprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'cv_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'cvprop_id',
- ],
- 'unique keys' => [
- 'cvprop_c1' => [
- 0 => 'cv_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'cv' => [
- 'table' => 'cv',
- 'columns' => [
- 'cv_id' => 'cv_id',
- ],
- ],
- ],
- 'table' => 'cvprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cvterm()
- * Purpose: To describe the structure of 'cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cvterm' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cvterm() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cvterm_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'cv_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '1024',
- 'not null' => TRUE,
- ],
- 'definition' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_obsolete' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- 'is_relationshiptype' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'cvterm_id',
- ],
- 'unique keys' => [
- 'cvterm_c1' => [
- 0 => 'name',
- 1 => 'cv_id',
- 2 => 'is_obsolete',
- ],
- 'cvterm_c2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'cvterm_idx1' => [
- 0 => 'cv_id',
- ],
- 'cvterm_idx2' => [
- 0 => 'name',
- ],
- 'cvterm_idx3' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'cv' => [
- 'table' => 'cv',
- 'columns' => [
- 'cv_id' => 'cv_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- ],
- 'table' => 'cvterm',
- 'referring_tables' => [
- 0 => 'acquisition_relationship',
- 1 => 'acquisitionprop',
- 2 => 'analysisfeatureprop',
- 3 => 'analysisprop',
- 4 => 'arraydesign',
- 6 => 'arraydesignprop',
- 7 => 'assayprop',
- 8 => 'biomaterial_relationship',
- 9 => 'biomaterial_treatment',
- 10 => 'biomaterialprop',
- 11 => 'cell_line_cvterm',
- 12 => 'cell_line_cvtermprop',
- 13 => 'cell_line_relationship',
- 14 => 'cell_lineprop',
- 15 => 'chadoprop',
- 23 => 'contact',
- 24 => 'contact_relationship',
- 25 => 'control',
- 26 => 'cvprop',
- 27 => 'cvterm_dbxref',
- 28 => 'cvterm_relationship',
- 31 => 'cvtermpath',
- 34 => 'cvtermprop',
- 36 => 'cvtermsynonym',
- 38 => 'dbxrefprop',
- 39 => 'element',
- 40 => 'element_relationship',
- 41 => 'elementresult_relationship',
- 42 => 'environment_cvterm',
- 43 => 'expression_cvterm',
- 45 => 'expression_cvtermprop',
- 46 => 'expressionprop',
- 47 => 'feature',
- 48 => 'feature_cvterm',
- 49 => 'feature_cvtermprop',
- 50 => 'feature_expressionprop',
- 51 => 'feature_genotype',
- 52 => 'feature_pubprop',
- 53 => 'feature_relationship',
- 54 => 'feature_relationshipprop',
- 55 => 'featuremap',
- 56 => 'featureprop',
- 57 => 'genotype',
- 58 => 'genotypeprop',
- 66 => 'library',
- 67 => 'library_cvterm',
- 68 => 'libraryprop',
- 69 => 'nd_experiment',
- 70 => 'nd_experiment_stock',
- 71 => 'nd_experiment_stockprop',
- 72 => 'nd_experimentprop',
- 73 => 'nd_geolocationprop',
- 74 => 'nd_protocol',
- 75 => 'nd_protocol_reagent',
- 76 => 'nd_protocolprop',
- 77 => 'nd_reagent',
- 78 => 'nd_reagent_relationship',
- 79 => 'nd_reagentprop',
- 80 => 'organismprop',
- 81 => 'phendesc',
- 82 => 'phenotype',
- 86 => 'phenotype_comparison_cvterm',
- 87 => 'phenotype_cvterm',
- 88 => 'phenstatement',
- 89 => 'phylonode',
- 90 => 'phylonode_relationship',
- 91 => 'phylonodeprop',
- 92 => 'phylotree',
- 93 => 'project_relationship',
- 101 => 'projectprop',
- 109 => 'protocol',
- 110 => 'protocolparam',
- 112 => 'pub',
- 113 => 'pub_relationship',
- 114 => 'pubprop',
- 115 => 'quantification_relationship',
- 116 => 'quantificationprop',
- 117 => 'stock',
- 118 => 'stock_cvterm',
- 119 => 'stock_cvtermprop',
- 127 => 'stock_dbxrefprop',
- 135 => 'stock_relationship',
- 136 => 'stock_relationship_cvterm',
- 144 => 'stockcollection',
- 145 => 'stockcollectionprop',
- 146 => 'stockprop',
- 147 => 'studydesignprop',
- 148 => 'studyfactor',
- 149 => 'studyprop',
- 150 => 'studyprop_feature',
- 151 => 'synonym',
- 152 => 'treatment',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cvterm_dbxref()
- * Purpose: To describe the structure of 'cvterm_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cvterm_dbxref' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cvterm_dbxref() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cvterm_dbxref_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_for_definition' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'cvterm_dbxref_id',
- ],
- 'unique keys' => [
- 'cvterm_dbxref_c1' => [
- 0 => 'cvterm_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'cvterm_dbxref_idx1' => [
- 0 => 'cvterm_id',
- ],
- 'cvterm_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- ],
- 'table' => 'cvterm_dbxref',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cvterm_relationship()
- * Purpose: To describe the structure of 'cvterm_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cvterm_relationship' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cvterm_relationship() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cvterm_relationship_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'subject_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'cvterm_relationship_id',
- ],
- 'unique keys' => [
- 'cvterm_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'cvterm_relationship_idx1' => [
- 0 => 'type_id',
- ],
- 'cvterm_relationship_idx2' => [
- 0 => 'subject_id',
- ],
- 'cvterm_relationship_idx3' => [
- 0 => 'object_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- 'subject_id' => 'cvterm_id',
- 'object_id' => 'cvterm_id',
- ],
- ],
- ],
- 'table' => 'cvterm_relationship',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cvtermpath()
- * Purpose: To describe the structure of 'cvtermpath' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cvtermpath' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cvtermpath() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cvtermpath_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'subject_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'cv_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pathdistance' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'cvtermpath_id',
- ],
- 'unique keys' => [
- 'cvtermpath_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- 3 => 'pathdistance',
- ],
- ],
- 'indexes' => [
- 'cvtermpath_idx1' => [
- 0 => 'type_id',
- ],
- 'cvtermpath_idx2' => [
- 0 => 'subject_id',
- ],
- 'cvtermpath_idx3' => [
- 0 => 'object_id',
- ],
- 'cvtermpath_idx4' => [
- 0 => 'cv_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- 'subject_id' => 'cvterm_id',
- 'object_id' => 'cvterm_id',
- ],
- ],
- 'cv' => [
- 'table' => 'cv',
- 'columns' => [
- 'cv_id' => 'cv_id',
- ],
- ],
- ],
- 'table' => 'cvtermpath',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cvtermprop()
- * Purpose: To describe the structure of 'cvtermprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cvtermprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cvtermprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cvtermprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- 'default' => '',
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'cvtermprop_id',
- ],
- 'unique keys' => [
- 'cvterm_id' => [
- 0 => 'cvterm_id',
- 1 => 'type_id',
- 2 => 'value',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'cvtermprop_idx1' => [
- 0 => 'cvterm_id',
- ],
- 'cvtermprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- 'table' => 'cvtermprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_cvtermsynonym()
- * Purpose: To describe the structure of 'cvtermsynonym' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cvtermsynonym' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_cvtermsynonym() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'cvtermsynonym_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'synonym' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '1024',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'cvtermsynonym_id',
- ],
- 'unique keys' => [
- 'cvtermsynonym_c1' => [
- 0 => 'cvterm_id',
- 1 => 'synonym',
- ],
- ],
- 'indexes' => [
- 'cvtermsynonym_idx1' => [
- 0 => 'cvterm_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- 'table' => 'cvtermsynonym',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_db()
- * Purpose: To describe the structure of 'db' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'db' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_db() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'db_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'urlprefix' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'url' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'db_id',
- ],
- 'unique keys' => [
- 'db_c1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- ],
- 'table' => 'db',
- 'referring_tables' => [
- 0 => 'dbxref',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_dbxref()
- * Purpose: To describe the structure of 'dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'dbxref' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_dbxref() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'db_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'accession' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- 'version' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- 'default' => '',
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'dbxref_id',
- ],
- 'unique keys' => [
- 'dbxref_c1' => [
- 0 => 'db_id',
- 1 => 'accession',
- 2 => 'version',
- ],
- ],
- 'indexes' => [
- 'dbxref_idx1' => [
- 0 => 'db_id',
- ],
- 'dbxref_idx2' => [
- 0 => 'accession',
- ],
- 'dbxref_idx3' => [
- 0 => 'version',
- ],
- ],
- 'foreign keys' => [
- 'db' => [
- 'table' => 'db',
- 'columns' => [
- 'db_id' => 'db_id',
- ],
- ],
- ],
- 'table' => 'dbxref',
- 'referring_tables' => [
- 0 => 'arraydesign',
- 1 => 'assay',
- 2 => 'biomaterial',
- 3 => 'biomaterial_dbxref',
- 4 => 'cell_line_dbxref',
- 5 => 'cvterm',
- 6 => 'cvterm_dbxref',
- 7 => 'dbxrefprop',
- 8 => 'element',
- 9 => 'feature',
- 10 => 'feature_cvterm_dbxref',
- 11 => 'feature_dbxref',
- 12 => 'library_dbxref',
- 13 => 'nd_experiment_dbxref',
- 14 => 'nd_experiment_stock_dbxref',
- 15 => 'organism_dbxref',
- 16 => 'phylonode_dbxref',
- 17 => 'phylotree',
- 18 => 'protocol',
- 19 => 'pub_dbxref',
- 20 => 'stock',
- 21 => 'stock_dbxref',
- 22 => 'study',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_dbxrefprop()
- * Purpose: To describe the structure of 'dbxrefprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'dbxrefprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_dbxrefprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'dbxrefprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- 'default' => '',
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'dbxrefprop_id',
- ],
- 'unique keys' => [
- 'dbxrefprop_c1' => [
- 0 => 'dbxref_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'dbxrefprop_idx1' => [
- 0 => 'dbxref_id',
- ],
- 'dbxrefprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- ],
- 'table' => 'dbxrefprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_eimage()
- * Purpose: To describe the structure of 'eimage' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'eimage' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_eimage() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'eimage_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'eimage_data' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'eimage_type' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- 'image_uri' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'eimage_id',
- ],
- 'unique keys' => [],
- 'foreign keys' => [
- ],
- 'table' => 'eimage',
- 'referring_tables' => [
- 0 => 'expression_image',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_element()
- * Purpose: To describe the structure of 'element' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'element' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_element() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'element_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'arraydesign_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'element_id',
- ],
- 'unique keys' => [
- 'element_c1' => [
- 0 => 'feature_id',
- 1 => 'arraydesign_id',
- ],
- ],
- 'indexes' => [
- 'element_idx1' => [
- 0 => 'feature_id',
- ],
- 'element_idx2' => [
- 0 => 'arraydesign_id',
- ],
- 'element_idx3' => [
- 0 => 'type_id',
- ],
- 'element_idx4' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'arraydesign' => [
- 'table' => 'arraydesign',
- 'columns' => [
- 'arraydesign_id' => 'arraydesign_id',
- ],
- ],
- ],
- 'table' => 'element',
- 'referring_tables' => [
- 0 => 'element_relationship',
- 2 => 'elementresult',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_element_relationship()
- * Purpose: To describe the structure of 'element_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'element_relationship' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_element_relationship() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'element_relationship_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'subject_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'element_relationship_id',
- ],
- 'unique keys' => [
- 'element_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'element_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'element_relationship_idx2' => [
- 0 => 'type_id',
- ],
- 'element_relationship_idx3' => [
- 0 => 'object_id',
- ],
- 'element_relationship_idx4' => [
- 0 => 'value',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'element' => [
- 'table' => 'element',
- 'columns' => [
- 'subject_id' => 'element_id',
- 'object_id' => 'element_id',
- ],
- ],
- ],
- 'table' => 'element_relationship',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_elementresult()
- * Purpose: To describe the structure of 'elementresult' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'elementresult' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_elementresult() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'elementresult_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'element_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'quantification_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'signal' => [
- 'description' => '',
- 'type' => 'float',
- 'size' => 'big',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'elementresult_id',
- ],
- 'unique keys' => [
- 'elementresult_c1' => [
- 0 => 'element_id',
- 1 => 'quantification_id',
- ],
- ],
- 'indexes' => [
- 'elementresult_idx1' => [
- 0 => 'element_id',
- ],
- 'elementresult_idx2' => [
- 0 => 'quantification_id',
- ],
- 'elementresult_idx3' => [
- 0 => 'signal',
- ],
- ],
- 'foreign keys' => [
- 'quantification' => [
- 'table' => 'quantification',
- 'columns' => [
- 'quantification_id' => 'quantification_id',
- ],
- ],
- 'element' => [
- 'table' => 'element',
- 'columns' => [
- 'element_id' => 'element_id',
- ],
- ],
- ],
- 'table' => 'elementresult',
- 'referring_tables' => [
- 0 => 'elementresult_relationship',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_elementresult_relationship()
- * Purpose: To describe the structure of 'elementresult_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'elementresult_relationship' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_elementresult_relationship() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'elementresult_relationship_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'subject_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'elementresult_relationship_id',
- ],
- 'unique keys' => [
- 'elementresult_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'elementresult_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'elementresult_relationship_idx2' => [
- 0 => 'type_id',
- ],
- 'elementresult_relationship_idx3' => [
- 0 => 'object_id',
- ],
- 'elementresult_relationship_idx4' => [
- 0 => 'value',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'elementresult' => [
- 'table' => 'elementresult',
- 'columns' => [
- 'subject_id' => 'elementresult_id',
- 'object_id' => 'elementresult_id',
- ],
- ],
- ],
- 'table' => 'elementresult_relationship',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_environment()
- * Purpose: To describe the structure of 'environment' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'environment' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_environment() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'environment_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'uniquename' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'environment_id',
- ],
- 'unique keys' => [
- 'environment_c1' => [
- 0 => 'uniquename',
- ],
- ],
- 'indexes' => [
- 'environment_idx1' => [
- 0 => 'uniquename',
- ],
- ],
- 'foreign keys' => [
- ],
- 'table' => 'environment',
- 'referring_tables' => [
- 0 => 'environment_cvterm',
- 1 => 'phendesc',
- 2 => 'phenotype_comparison',
- 4 => 'phenstatement',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_environment_cvterm()
- * Purpose: To describe the structure of 'environment_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'environment_cvterm' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_environment_cvterm() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'environment_cvterm_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'environment_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'environment_cvterm_id',
- ],
- 'unique keys' => [
- 'environment_cvterm_c1' => [
- 0 => 'environment_id',
- 1 => 'cvterm_id',
- ],
- ],
- 'indexes' => [
- 'environment_cvterm_idx1' => [
- 0 => 'environment_id',
- ],
- 'environment_cvterm_idx2' => [
- 0 => 'cvterm_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'environment' => [
- 'table' => 'environment',
- 'columns' => [
- 'environment_id' => 'environment_id',
- ],
- ],
- ],
- 'table' => 'environment_cvterm',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_expression()
- * Purpose: To describe the structure of 'expression' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'expression' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_expression() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'expression_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'uniquename' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'md5checksum' => [
- 'description' => '',
- 'type' => 'char',
- 'length' => '32',
- 'not null' => FALSE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'expression_id',
- ],
- 'unique keys' => [
- 'expression_c1' => [
- 0 => 'uniquename',
- ],
- ],
- 'foreign keys' => [
- ],
- 'table' => 'expression',
- 'referring_tables' => [
- 0 => 'expression_cvterm',
- 1 => 'expression_image',
- 2 => 'expression_pub',
- 3 => 'expressionprop',
- 4 => 'feature_expression',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_expression_cvterm()
- * Purpose: To describe the structure of 'expression_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'expression_cvterm' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_expression_cvterm() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'expression_cvterm_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'expression_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- 'cvterm_type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'expression_cvterm_id',
- ],
- 'unique keys' => [
- 'expression_cvterm_c1' => [
- 0 => 'expression_id',
- 1 => 'cvterm_id',
- 2 => 'cvterm_type_id',
- ],
- ],
- 'indexes' => [
- 'expression_cvterm_idx1' => [
- 0 => 'expression_id',
- ],
- 'expression_cvterm_idx2' => [
- 0 => 'cvterm_id',
- ],
- 'expression_cvterm_idx3' => [
- 0 => 'cvterm_type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- 'cvterm_type_id' => 'cvterm_id',
- ],
- ],
- 'expression' => [
- 'table' => 'expression',
- 'columns' => [
- 'expression_id' => 'expression_id',
- ],
- ],
- ],
- 'table' => 'expression_cvterm',
- 'referring_tables' => [
- 0 => 'expression_cvtermprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_expression_cvtermprop()
- * Purpose: To describe the structure of 'expression_cvtermprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'expression_cvtermprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_expression_cvtermprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'expression_cvtermprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'expression_cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'expression_cvtermprop_id',
- ],
- 'unique keys' => [
- 'expression_cvtermprop_c1' => [
- 0 => 'expression_cvterm_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'expression_cvtermprop_idx1' => [
- 0 => 'expression_cvterm_id',
- ],
- 'expression_cvtermprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'expression_cvterm' => [
- 'table' => 'expression_cvterm',
- 'columns' => [
- 'expression_cvterm_id' => 'expression_cvterm_id',
- ],
- ],
- ],
- 'table' => 'expression_cvtermprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_expression_image()
- * Purpose: To describe the structure of 'expression_image' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'expression_image' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_expression_image() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'expression_image_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'expression_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'eimage_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'expression_image_id',
- ],
- 'unique keys' => [
- 'expression_image_c1' => [
- 0 => 'expression_id',
- 1 => 'eimage_id',
- ],
- ],
- 'indexes' => [
- 'expression_image_idx1' => [
- 0 => 'expression_id',
- ],
- 'expression_image_idx2' => [
- 0 => 'eimage_id',
- ],
- ],
- 'foreign keys' => [
- 'expression' => [
- 'table' => 'expression',
- 'columns' => [
- 'expression_id' => 'expression_id',
- ],
- ],
- 'eimage' => [
- 'table' => 'eimage',
- 'columns' => [
- 'eimage_id' => 'eimage_id',
- ],
- ],
- ],
- 'table' => 'expression_image',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_expression_pub()
- * Purpose: To describe the structure of 'expression_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'expression_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_expression_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'expression_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'expression_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'expression_pub_id',
- ],
- 'unique keys' => [
- 'expression_pub_c1' => [
- 0 => 'expression_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'expression_pub_idx1' => [
- 0 => 'expression_id',
- ],
- 'expression_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'expression' => [
- 'table' => 'expression',
- 'columns' => [
- 'expression_id' => 'expression_id',
- ],
- ],
- ],
- 'table' => 'expression_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_expressionprop()
- * Purpose: To describe the structure of 'expressionprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'expressionprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_expressionprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'expressionprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'expression_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'expressionprop_id',
- ],
- 'unique keys' => [
- 'expressionprop_c1' => [
- 0 => 'expression_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'expressionprop_idx1' => [
- 0 => 'expression_id',
- ],
- 'expressionprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'expression' => [
- 'table' => 'expression',
- 'columns' => [
- 'expression_id' => 'expression_id',
- ],
- ],
- ],
- 'table' => 'expressionprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature()
- * Purpose: To describe the structure of 'feature' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'organism_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'uniquename' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'residues' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'seqlen' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'md5checksum' => [
- 'description' => '',
- 'type' => 'char',
- 'length' => '32',
- 'not null' => FALSE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_analysis' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'false',
- ],
- 'is_obsolete' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'false',
- ],
- 'timeaccessioned' => [
- 'description' => '',
- 'type' => 'datetime',
- 'not null' => TRUE,
- 'default' => 'now()',
- ],
- 'timelastmodified' => [
- 'description' => '',
- 'type' => 'datetime',
- 'not null' => TRUE,
- 'default' => 'now()',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_id',
- ],
- 'unique keys' => [
- 'feature_c1' => [
- 0 => 'organism_id',
- 1 => 'uniquename',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'feature_idx1' => [
- 0 => 'dbxref_id',
- ],
- 'feature_idx2' => [
- 0 => 'organism_id',
- ],
- 'feature_idx3' => [
- 0 => 'type_id',
- ],
- 'feature_idx4' => [
- 0 => 'uniquename',
- ],
- 'feature_name_ind1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- ],
- 'table' => 'feature',
- 'referring_tables' => [
- 0 => 'analysisfeature',
- 1 => 'cell_line_feature',
- 2 => 'element',
- 3 => 'feature_cvterm',
- 4 => 'feature_dbxref',
- 5 => 'feature_expression',
- 6 => 'feature_genotype',
- 8 => 'feature_phenotype',
- 9 => 'feature_pub',
- 10 => 'feature_relationship',
- 12 => 'feature_synonym',
- 13 => 'featureloc',
- 15 => 'featurepos',
- 17 => 'featureprop',
- 18 => 'featurerange',
- 23 => 'library_feature',
- 24 => 'phylonode',
- 25 => 'studyprop_feature',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_cvterm()
- * Purpose: To describe the structure of 'feature_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_cvterm' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_cvterm() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_cvterm_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_not' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'false',
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'feature_cvterm_id',
- ],
- 'unique keys' => [
- 'feature_cvterm_c1' => [
- 0 => 'feature_id',
- 1 => 'cvterm_id',
- 2 => 'pub_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'feature_cvterm_idx1' => [
- 0 => 'feature_id',
- ],
- 'feature_cvterm_idx2' => [
- 0 => 'cvterm_id',
- ],
- 'feature_cvterm_idx3' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- ],
- 'table' => 'feature_cvterm',
- 'referring_tables' => [
- 0 => 'feature_cvterm_dbxref',
- 1 => 'feature_cvterm_pub',
- 2 => 'feature_cvtermprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_cvterm_dbxref()
- * Purpose: To describe the structure of 'feature_cvterm_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_cvterm_dbxref' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_cvterm_dbxref() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_cvterm_dbxref_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'feature_cvterm_dbxref_id',
- ],
- 'unique keys' => [
- 'feature_cvterm_dbxref_c1' => [
- 0 => 'feature_cvterm_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'feature_cvterm_dbxref_idx1' => [
- 0 => 'feature_cvterm_id',
- ],
- 'feature_cvterm_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'feature_cvterm' => [
- 'table' => 'feature_cvterm',
- 'columns' => [
- 'feature_cvterm_id' => 'feature_cvterm_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- ],
- 'table' => 'feature_cvterm_dbxref',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_cvterm_pub()
- * Purpose: To describe the structure of 'feature_cvterm_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_cvterm_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_cvterm_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_cvterm_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'feature_cvterm_pub_id',
- ],
- 'unique keys' => [
- 'feature_cvterm_pub_c1' => [
- 0 => 'feature_cvterm_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'feature_cvterm_pub_idx1' => [
- 0 => 'feature_cvterm_id',
- ],
- 'feature_cvterm_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'feature_cvterm' => [
- 'table' => 'feature_cvterm',
- 'columns' => [
- 'feature_cvterm_id' => 'feature_cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- 'table' => 'feature_cvterm_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_cvtermprop()
- * Purpose: To describe the structure of 'feature_cvtermprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_cvtermprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_cvtermprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_cvtermprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'feature_cvtermprop_id',
- ],
- 'unique keys' => [
- 'feature_cvtermprop_c1' => [
- 0 => 'feature_cvterm_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'feature_cvtermprop_idx1' => [
- 0 => 'feature_cvterm_id',
- ],
- 'feature_cvtermprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'feature_cvterm' => [
- 'table' => 'feature_cvterm',
- 'columns' => [
- 'feature_cvterm_id' => 'feature_cvterm_id',
- ],
- ],
- ],
- 'table' => 'feature_cvtermprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_dbxref()
- * Purpose: To describe the structure of 'feature_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_dbxref' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_dbxref() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_dbxref_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_current' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'true',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_dbxref_id',
- ],
- 'unique keys' => [
- 'feature_dbxref_c1' => [
- 0 => 'feature_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'feature_dbxref_idx1' => [
- 0 => 'feature_id',
- ],
- 'feature_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- ],
- 'table' => 'feature_dbxref',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_expression()
- * Purpose: To describe the structure of 'feature_expression' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_expression' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_expression() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_expression_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'expression_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'feature_expression_id',
- ],
- 'unique keys' => [
- 'feature_expression_c1' => [
- 0 => 'expression_id',
- 1 => 'feature_id',
- 2 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'feature_expression_idx1' => [
- 0 => 'expression_id',
- ],
- 'feature_expression_idx2' => [
- 0 => 'feature_id',
- ],
- 'feature_expression_idx3' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'expression' => [
- 'table' => 'expression',
- 'columns' => [
- 'expression_id' => 'expression_id',
- ],
- ],
- ],
- 'table' => 'feature_expression',
- 'referring_tables' => [
- 0 => 'feature_expressionprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_expressionprop()
- * Purpose: To describe the structure of 'feature_expressionprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_expressionprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_expressionprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_expressionprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_expression_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'feature_expressionprop_id',
- ],
- 'unique keys' => [
- 'feature_expressionprop_c1' => [
- 0 => 'feature_expression_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'feature_expressionprop_idx1' => [
- 0 => 'feature_expression_id',
- ],
- 'feature_expressionprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'feature_expression' => [
- 'table' => 'feature_expression',
- 'columns' => [
- 'feature_expression_id' => 'feature_expression_id',
- ],
- ],
- ],
- 'table' => 'feature_expressionprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_genotype()
- * Purpose: To describe the structure of 'feature_genotype' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_genotype' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_genotype() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_genotype_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'genotype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'chromosome_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'cgroup' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'feature_genotype_id',
- ],
- 'unique keys' => [
- 'feature_genotype_c1' => [
- 0 => 'feature_id',
- 1 => 'genotype_id',
- 2 => 'cvterm_id',
- 3 => 'chromosome_id',
- 4 => 'rank',
- 5 => 'cgroup',
- ],
- ],
- 'indexes' => [
- 'feature_genotype_idx1' => [
- 0 => 'feature_id',
- ],
- 'feature_genotype_idx2' => [
- 0 => 'genotype_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- 'chromosome_id' => 'feature_id',
- ],
- ],
- 'genotype' => [
- 'table' => 'genotype',
- 'columns' => [
- 'genotype_id' => 'genotype_id',
- ],
- ],
- ],
- 'table' => 'feature_genotype',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_phenotype()
- * Purpose: To describe the structure of 'feature_phenotype' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_phenotype' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_phenotype() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_phenotype_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'phenotype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'feature_phenotype_id',
- ],
- 'unique keys' => [
- 'feature_phenotype_c1' => [
- 0 => 'feature_id',
- 1 => 'phenotype_id',
- ],
- ],
- 'indexes' => [
- 'feature_phenotype_idx1' => [
- 0 => 'feature_id',
- ],
- 'feature_phenotype_idx2' => [
- 0 => 'phenotype_id',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'phenotype' => [
- 'table' => 'phenotype',
- 'columns' => [
- 'phenotype_id' => 'phenotype_id',
- ],
- ],
- ],
- 'table' => 'feature_phenotype',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_pub()
- * Purpose: To describe the structure of 'feature_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'feature_pub_id',
- ],
- 'unique keys' => [
- 'feature_pub_c1' => [
- 0 => 'feature_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'feature_pub_idx1' => [
- 0 => 'feature_id',
- ],
- 'feature_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- ],
- 'table' => 'feature_pub',
- 'referring_tables' => [
- 0 => 'feature_pubprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_pubprop()
- * Purpose: To describe the structure of 'feature_pubprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_pubprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_pubprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_pubprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'feature_pubprop_id',
- ],
- 'unique keys' => [
- 'feature_pubprop_c1' => [
- 0 => 'feature_pub_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'feature_pubprop_idx1' => [
- 0 => 'feature_pub_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'feature_pub' => [
- 'table' => 'feature_pub',
- 'columns' => [
- 'feature_pub_id' => 'feature_pub_id',
- ],
- ],
- ],
- 'table' => 'feature_pubprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_relationship()
- * Purpose: To describe the structure of 'feature_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_relationship' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_relationship() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_relationship_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'subject_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'feature_relationship_id',
- ],
- 'unique keys' => [
- 'feature_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'feature_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'feature_relationship_idx2' => [
- 0 => 'object_id',
- ],
- 'feature_relationship_idx3' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'subject_id' => 'feature_id',
- 'object_id' => 'feature_id',
- ],
- ],
- ],
- 'table' => 'feature_relationship',
- 'referring_tables' => [
- 0 => 'feature_relationship_pub',
- 1 => 'feature_relationshipprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_relationship_pub()
- * Purpose: To describe the structure of 'feature_relationship_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_relationship_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_relationship_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_relationship_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_relationship_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'feature_relationship_pub_id',
- ],
- 'unique keys' => [
- 'feature_relationship_pub_c1' => [
- 0 => 'feature_relationship_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'feature_relationship_pub_idx1' => [
- 0 => 'feature_relationship_id',
- ],
- 'feature_relationship_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'feature_relationship' => [
- 'table' => 'feature_relationship',
- 'columns' => [
- 'feature_relationship_id' => 'feature_relationship_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- 'table' => 'feature_relationship_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_relationshipprop()
- * Purpose: To describe the structure of 'feature_relationshipprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_relationshipprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_relationshipprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_relationshipprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_relationship_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'feature_relationshipprop_id',
- ],
- 'unique keys' => [
- 'feature_relationshipprop_c1' => [
- 0 => 'feature_relationship_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'feature_relationshipprop_idx1' => [
- 0 => 'feature_relationship_id',
- ],
- 'feature_relationshipprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'feature_relationship' => [
- 'table' => 'feature_relationship',
- 'columns' => [
- 'feature_relationship_id' => 'feature_relationship_id',
- ],
- ],
- ],
- 'table' => 'feature_relationshipprop',
- 'referring_tables' => [
- 0 => 'feature_relationshipprop_pub',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_relationshipprop_pub()
- * Purpose: To describe the structure of 'feature_relationshipprop_pub' to
- * tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_relationshipprop_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_relationshipprop_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_relationshipprop_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_relationshipprop_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'feature_relationshipprop_pub_id',
- ],
- 'unique keys' => [
- 'feature_relationshipprop_pub_c1' => [
- 0 => 'feature_relationshipprop_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'feature_relationshipprop_pub_idx1' => [
- 0 => 'feature_relationshipprop_id',
- ],
- 'feature_relationshipprop_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'feature_relationshipprop' => [
- 'table' => 'feature_relationshipprop',
- 'columns' => [
- 'feature_relationshipprop_id' => 'feature_relationshipprop_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- 'table' => 'feature_relationshipprop_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_feature_synonym()
- * Purpose: To describe the structure of 'feature_synonym' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_synonym' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_feature_synonym() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'feature_synonym_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'synonym_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_current' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'false',
- ],
- 'is_internal' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'false',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_synonym_id',
- ],
- 'unique keys' => [
- 'feature_synonym_c1' => [
- 0 => 'synonym_id',
- 1 => 'feature_id',
- 2 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'feature_synonym_idx1' => [
- 0 => 'synonym_id',
- ],
- 'feature_synonym_idx2' => [
- 0 => 'feature_id',
- ],
- 'feature_synonym_idx3' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'synonym' => [
- 'table' => 'synonym',
- 'columns' => [
- 'synonym_id' => 'synonym_id',
- ],
- ],
- ],
- 'table' => 'feature_synonym',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_featureloc()
- * Purpose: To describe the structure of 'featureloc' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featureloc' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_featureloc() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'featureloc_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'srcfeature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'fmin' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'is_fmin_partial' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'false',
- ],
- 'fmax' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'is_fmax_partial' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'false',
- ],
- 'strand' => [
- 'description' => '',
- 'type' => 'int',
- 'size' => 'small',
- 'not null' => FALSE,
- ],
- 'phase' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'residue_info' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'locgroup' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'featureloc_id',
- ],
- 'unique keys' => [
- 'featureloc_c1' => [
- 0 => 'feature_id',
- 1 => 'locgroup',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'binloc_boxrange' => [
- 0 => 'fmin',
- ],
- 'binloc_boxrange_src' => [
- 0 => 'srcfeature_id',
- 1 => 'fmin',
- ],
- 'featureloc_idx1' => [
- 0 => 'feature_id',
- ],
- 'featureloc_idx2' => [
- 0 => 'srcfeature_id',
- ],
- 'featureloc_idx3' => [
- 0 => 'srcfeature_id',
- 1 => 'fmin',
- 2 => 'fmax',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- 'srcfeature_id' => 'feature_id',
- ],
- ],
- ],
- 'referring_tables' => [
- 0 => 'featureloc_pub',
- ],
- 'table' => 'featureloc',
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_featureloc_pub()
- * Purpose: To describe the structure of 'featureloc_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featureloc_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_featureloc_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'featureloc_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'featureloc_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'featureloc_pub_id',
- ],
- 'unique keys' => [
- 'featureloc_pub_c1' => [
- 0 => 'featureloc_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'featureloc_pub_idx1' => [
- 0 => 'featureloc_id',
- ],
- 'featureloc_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'featureloc' => [
- 'table' => 'featureloc',
- 'columns' => [
- 'featureloc_id' => 'featureloc_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- 'table' => 'featureloc_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_featuremap()
- * Purpose: To describe the structure of 'featuremap' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featuremap' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_featuremap() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'featuremap_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'unittype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'featuremap_id',
- ],
- 'unique keys' => [
- 'featuremap_c1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'unittype_id' => 'cvterm_id',
- ],
- ],
- ],
- 'table' => 'featuremap',
- 'referring_tables' => [
- 0 => 'featuremap_pub',
- 1 => 'featurepos',
- 2 => 'featurerange',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_featuremap_pub()
- * Purpose: To describe the structure of 'featuremap_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featuremap_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_featuremap_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'featuremap_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'featuremap_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'featuremap_pub_id',
- ],
- 'unique keys' => [],
- 'indexes' => [
- 'featuremap_pub_idx1' => [
- 0 => 'featuremap_id',
- ],
- 'featuremap_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'featuremap' => [
- 'table' => 'featuremap',
- 'columns' => [
- 'featuremap_id' => 'featuremap_id',
- ],
- ],
- ],
- 'table' => 'featuremap_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_featurepos()
- * Purpose: To describe the structure of 'featurepos' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featurepos' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_featurepos() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'featurepos_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'featuremap_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'map_feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'mappos' => [
- 'description' => '',
- 'type' => 'float',
- 'size' => 'big',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'featurepos_id',
- ],
- 'unique keys' => [],
- 'indexes' => [
- 'featurepos_idx1' => [
- 0 => 'featuremap_id',
- ],
- 'featurepos_idx2' => [
- 0 => 'feature_id',
- ],
- 'featurepos_idx3' => [
- 0 => 'map_feature_id',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- 'map_feature_id' => 'feature_id',
- ],
- ],
- 'featuremap' => [
- 'table' => 'featuremap',
- 'columns' => [
- 'featuremap_id' => 'featuremap_id',
- ],
- ],
- ],
- 'table' => 'featurepos',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_featureprop()
- * Purpose: To describe the structure of 'featureprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featureprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_featureprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'featureprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'featureprop_id',
- ],
- 'unique keys' => [
- 'featureprop_c1' => [
- 0 => 'feature_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'featureprop_idx1' => [
- 0 => 'feature_id',
- ],
- 'featureprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- ],
- 'table' => 'featureprop',
- 'referring_tables' => [
- 0 => 'featureprop_pub',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_featureprop_pub()
- * Purpose: To describe the structure of 'featureprop_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featureprop_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_featureprop_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'featureprop_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'featureprop_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'featureprop_pub_id',
- ],
- 'unique keys' => [
- 'featureprop_pub_c1' => [
- 0 => 'featureprop_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'featureprop_pub_idx1' => [
- 0 => 'featureprop_id',
- ],
- 'featureprop_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'featureprop' => [
- 'table' => 'featureprop',
- 'columns' => [
- 'featureprop_id' => 'featureprop_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- 'table' => 'featureprop_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_featurerange()
- * Purpose: To describe the structure of 'featurerange' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featurerange' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_featurerange() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'featurerange_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'featuremap_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'leftstartf_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'leftendf_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'rightstartf_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'rightendf_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'rangestr' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'featurerange_id',
- ],
- 'unique keys' => [],
- 'indexes' => [
- 'featurerange_idx1' => [
- 0 => 'featuremap_id',
- ],
- 'featurerange_idx2' => [
- 0 => 'feature_id',
- ],
- 'featurerange_idx3' => [
- 0 => 'leftstartf_id',
- ],
- 'featurerange_idx4' => [
- 0 => 'leftendf_id',
- ],
- 'featurerange_idx5' => [
- 0 => 'rightstartf_id',
- ],
- 'featurerange_idx6' => [
- 0 => 'rightendf_id',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- 'leftstartf_id' => 'feature_id',
- 'leftendf_id' => 'feature_id',
- 'rightstartf_id' => 'feature_id',
- 'rightendf_id' => 'feature_id',
- ],
- ],
- 'featuremap' => [
- 'table' => 'featuremap',
- 'columns' => [
- 'featuremap_id' => 'featuremap_id',
- ],
- ],
- ],
- 'table' => 'featurerange',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_genotype()
- * Purpose: To describe the structure of 'genotype' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'genotype' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_genotype() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'genotype_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'uniquename' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'genotype_id',
- ],
- 'unique keys' => [
- 'genotype_c1' => [
- 0 => 'uniquename',
- ],
- ],
- 'indexes' => [
- 'genotype_idx1' => [
- 0 => 'uniquename',
- ],
- 'genotype_idx2' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- 'table' => 'genotype',
- 'referring_tables' => [
- 0 => 'feature_genotype',
- 1 => 'genotypeprop',
- 9 => 'nd_experiment_genotype',
- 10 => 'phendesc',
- 11 => 'phenotype_comparison',
- 13 => 'phenstatement',
- 14 => 'stock_genotype',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_genotypeprop()
- * Purpose: To describe the structure of 'genotypeprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'genotypeprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_genotypeprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'genotypeprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'genotype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'genotypeprop_id',
- ],
- 'unique keys' => [
- 'genotypeprop_c1' => [
- 0 => 'genotype_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'genotypeprop_idx1' => [
- 0 => 'genotype_id',
- ],
- 'genotypeprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'genotype' => [
- 'table' => 'genotype',
- 'columns' => [
- 'genotype_id' => 'genotype_id',
- ],
- ],
- ],
- 'table' => 'genotypeprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_library()
- * Purpose: To describe the structure of 'library' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'library' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_library() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'library_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'organism_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'uniquename' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_obsolete' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- 'timeaccessioned' => [
- 'description' => '',
- 'type' => 'datetime',
- 'not null' => TRUE,
- 'default' => 'now()',
- ],
- 'timelastmodified' => [
- 'description' => '',
- 'type' => 'datetime',
- 'not null' => TRUE,
- 'default' => 'now()',
- ],
- ],
- 'primary key' => [
- 0 => 'library_id',
- ],
- 'unique keys' => [
- 'library_c1' => [
- 0 => 'organism_id',
- 1 => 'uniquename',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'library_idx1' => [
- 0 => 'organism_id',
- ],
- 'library_idx2' => [
- 0 => 'type_id',
- ],
- 'library_idx3' => [
- 0 => 'uniquename',
- ],
- 'library_name_ind1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- 'referring_tables' => [
- 0 => 'cell_line_library',
- 1 => 'library_cvterm',
- 2 => 'library_dbxref',
- 3 => 'library_feature',
- 4 => 'library_pub',
- 5 => 'library_synonym',
- 6 => 'libraryprop',
- ],
- 'table' => 'library',
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_library_cvterm()
- * Purpose: To describe the structure of 'library_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'library_cvterm' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_library_cvterm() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'library_cvterm_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'library_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'library_cvterm_id',
- ],
- 'unique keys' => [
- 'library_cvterm_c1' => [
- 0 => 'library_id',
- 1 => 'cvterm_id',
- 2 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'library_cvterm_idx1' => [
- 0 => 'library_id',
- ],
- 'library_cvterm_idx2' => [
- 0 => 'cvterm_id',
- ],
- 'library_cvterm_idx3' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'library' => [
- 'table' => 'library',
- 'columns' => [
- 'library_id' => 'library_id',
- ],
- ],
- ],
- 'table' => 'library_cvterm',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_library_dbxref()
- * Purpose: To describe the structure of 'library_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'library_dbxref' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_library_dbxref() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'library_dbxref_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'library_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_current' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'true',
- ],
- ],
- 'primary key' => [
- 0 => 'library_dbxref_id',
- ],
- 'unique keys' => [
- 'library_dbxref_c1' => [
- 0 => 'library_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'library_dbxref_idx1' => [
- 0 => 'library_id',
- ],
- 'library_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'library' => [
- 'table' => 'library',
- 'columns' => [
- 'library_id' => 'library_id',
- ],
- ],
- ],
- 'table' => 'library_dbxref',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_library_feature()
- * Purpose: To describe the structure of 'library_feature' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'library_feature' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_library_feature() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'library_feature_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'library_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'library_feature_id',
- ],
- 'unique keys' => [
- 'library_feature_c1' => [
- 0 => 'library_id',
- 1 => 'feature_id',
- ],
- ],
- 'indexes' => [
- 'library_feature_idx1' => [
- 0 => 'library_id',
- ],
- 'library_feature_idx2' => [
- 0 => 'feature_id',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'library' => [
- 'table' => 'library',
- 'columns' => [
- 'library_id' => 'library_id',
- ],
- ],
- ],
- 'table' => 'library_feature',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_library_pub()
- * Purpose: To describe the structure of 'library_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'library_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_library_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'library_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'library_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'library_pub_id',
- ],
- 'unique keys' => [
- 'library_pub_c1' => [
- 0 => 'library_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'library_pub_idx1' => [
- 0 => 'library_id',
- ],
- 'library_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'library' => [
- 'table' => 'library',
- 'columns' => [
- 'library_id' => 'library_id',
- ],
- ],
- ],
- 'table' => 'library_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_library_synonym()
- * Purpose: To describe the structure of 'library_synonym' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'library_synonym' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_library_synonym() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'library_synonym_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'synonym_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'library_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_current' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'true',
- ],
- 'is_internal' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'false',
- ],
- ],
- 'primary key' => [
- 0 => 'library_synonym_id',
- ],
- 'unique keys' => [
- 'library_synonym_c1' => [
- 0 => 'synonym_id',
- 1 => 'library_id',
- 2 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'library_synonym_idx1' => [
- 0 => 'synonym_id',
- ],
- 'library_synonym_idx2' => [
- 0 => 'library_id',
- ],
- 'library_synonym_idx3' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'synonym' => [
- 'table' => 'synonym',
- 'columns' => [
- 'synonym_id' => 'synonym_id',
- ],
- ],
- 'library' => [
- 'table' => 'library',
- 'columns' => [
- 'library_id' => 'library_id',
- ],
- ],
- ],
- 'table' => 'library_synonym',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_libraryprop()
- * Purpose: To describe the structure of 'libraryprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'libraryprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_libraryprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'libraryprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'library_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'libraryprop_id',
- ],
- 'unique keys' => [
- 'libraryprop_c1' => [
- 0 => 'library_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'libraryprop_idx1' => [
- 0 => 'library_id',
- ],
- 'libraryprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'library' => [
- 'table' => 'library',
- 'columns' => [
- 'library_id' => 'library_id',
- ],
- ],
- ],
- 'table' => 'libraryprop',
- 'referring_tables' => [
- 0 => 'libraryprop_pub',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_libraryprop_pub()
- * Purpose: To describe the structure of 'libraryprop_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'libraryprop_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_libraryprop_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'libraryprop_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'libraryprop_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'libraryprop_pub_id',
- ],
- 'unique keys' => [
- 'libraryprop_pub_c1' => [
- 0 => 'libraryprop_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'libraryprop_pub_idx1' => [
- 0 => 'libraryprop_id',
- ],
- 'libraryprop_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'libraryprop' => [
- 'table' => 'libraryprop',
- 'columns' => [
- 'libraryprop_id' => 'libraryprop_id',
- ],
- ],
- ],
- 'table' => 'libraryprop_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_magedocumentation()
- * Purpose: To describe the structure of 'magedocumentation' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'magedocumentation' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_magedocumentation() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'magedocumentation_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'mageml_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'tableinfo_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'row_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'mageidentifier' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'magedocumentation_id',
- ],
- 'unique keys' => [],
- 'indexes' => [
- 'magedocumentation_idx1' => [
- 0 => 'mageml_id',
- ],
- 'magedocumentation_idx2' => [
- 0 => 'tableinfo_id',
- ],
- 'magedocumentation_idx3' => [
- 0 => 'row_id',
- ],
- ],
- 'foreign keys' => [
- 'tableinfo' => [
- 'table' => 'tableinfo',
- 'columns' => [
- 'tableinfo_id' => 'tableinfo_id',
- ],
- ],
- 'mageml' => [
- 'table' => 'mageml',
- 'columns' => [
- 'mageml_id' => 'mageml_id',
- ],
- ],
- ],
- 'table' => 'magedocumentation',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_mageml()
- * Purpose: To describe the structure of 'mageml' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'mageml' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_mageml() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'mageml_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'mage_package' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'mage_ml' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'mageml_id',
- ],
- 'unique keys' => [],
- 'foreign keys' => [
- ],
- 'table' => 'mageml',
- 'referring_tables' => [
- 0 => 'magedocumentation',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_experiment()
- * Purpose: To describe the structure of 'nd_experiment' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_experiment' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_experiment() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_experiment_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_geolocation_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_experiment_id',
- ],
- 'unique keys' => [],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'nd_geolocation' => [
- 'table' => 'nd_geolocation',
- 'columns' => [
- 'nd_geolocation_id' => 'nd_geolocation_id',
- ],
- ],
- ],
- 'table' => 'nd_experiment',
- 'referring_tables' => [
- 0 => 'nd_experiment_contact',
- 1 => 'nd_experiment_dbxref',
- 2 => 'nd_experiment_genotype',
- 3 => 'nd_experiment_phenotype',
- 4 => 'nd_experiment_project',
- 5 => 'nd_experiment_protocol',
- 6 => 'nd_experiment_pub',
- 7 => 'nd_experiment_stock',
- 8 => 'nd_experimentprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_experiment_contact()
- * Purpose: To describe the structure of 'nd_experiment_contact' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_experiment_contact' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_experiment_contact() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_experiment_contact_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_experiment_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'contact_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_experiment_contact_id',
- ],
- 'unique keys' => [],
- 'foreign keys' => [
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'contact_id' => 'contact_id',
- ],
- ],
- 'nd_experiment' => [
- 'table' => 'nd_experiment',
- 'columns' => [
- 'nd_experiment_id' => 'nd_experiment_id',
- ],
- ],
- ],
- 'table' => 'nd_experiment_contact',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_experiment_dbxref()
- * Purpose: To describe the structure of 'nd_experiment_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_experiment_dbxref' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_experiment_dbxref() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_experiment_dbxref_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_experiment_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_experiment_dbxref_id',
- ],
- 'unique keys' => [],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'nd_experiment' => [
- 'table' => 'nd_experiment',
- 'columns' => [
- 'nd_experiment_id' => 'nd_experiment_id',
- ],
- ],
- ],
- 'table' => 'nd_experiment_dbxref',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_experiment_genotype()
- * Purpose: To describe the structure of 'nd_experiment_genotype' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_experiment_genotype' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_experiment_genotype() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_experiment_genotype_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_experiment_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'genotype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_experiment_genotype_id',
- ],
- 'unique keys' => [
- 'nd_experiment_genotype_c1' => [
- 0 => 'nd_experiment_id',
- 1 => 'genotype_id',
- ],
- ],
- 'foreign keys' => [
- 'genotype' => [
- 'table' => 'genotype',
- 'columns' => [
- 'genotype_id' => 'genotype_id',
- ],
- ],
- 'nd_experiment' => [
- 'table' => 'nd_experiment',
- 'columns' => [
- 'nd_experiment_id' => 'nd_experiment_id',
- ],
- ],
- ],
- 'table' => 'nd_experiment_genotype',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_experiment_phenotype()
- * Purpose: To describe the structure of 'nd_experiment_phenotype' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_experiment_phenotype' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_experiment_phenotype() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_experiment_phenotype_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_experiment_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'phenotype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_experiment_phenotype_id',
- ],
- 'unique keys' => [
- 'nd_experiment_phenotype_c1' => [
- 0 => 'nd_experiment_id',
- 1 => 'phenotype_id',
- ],
- ],
- 'foreign keys' => [
- 'phenotype' => [
- 'table' => 'phenotype',
- 'columns' => [
- 'phenotype_id' => 'phenotype_id',
- ],
- ],
- 'nd_experiment' => [
- 'table' => 'nd_experiment',
- 'columns' => [
- 'nd_experiment_id' => 'nd_experiment_id',
- ],
- ],
- ],
- 'table' => 'nd_experiment_phenotype',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_experiment_project()
- * Purpose: To describe the structure of 'nd_experiment_project' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_experiment_project' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_experiment_project() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_experiment_project_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'project_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'nd_experiment_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_experiment_project_id',
- ],
- 'unique keys' => [],
- 'foreign keys' => [
- 'project' => [
- 'table' => 'project',
- 'columns' => [
- 'project_id' => 'project_id',
- ],
- ],
- 'nd_experiment' => [
- 'table' => 'nd_experiment',
- 'columns' => [
- 'nd_experiment_id' => 'nd_experiment_id',
- ],
- ],
- ],
- 'table' => 'nd_experiment_project',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_experiment_protocol()
- * Purpose: To describe the structure of 'nd_experiment_protocol' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_experiment_protocol' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_experiment_protocol() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_experiment_protocol_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_experiment_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'nd_protocol_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_experiment_protocol_id',
- ],
- 'unique keys' => [],
- 'foreign keys' => [
- 'nd_experiment' => [
- 'table' => 'nd_experiment',
- 'columns' => [
- 'nd_experiment_id' => 'nd_experiment_id',
- ],
- ],
- 'nd_protocol' => [
- 'table' => 'nd_protocol',
- 'columns' => [
- 'nd_protocol_id' => 'nd_protocol_id',
- ],
- ],
- ],
- 'table' => 'nd_experiment_protocol',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_experiment_pub()
- * Purpose: To describe the structure of 'nd_experiment_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_experiment_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_experiment_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_experiment_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_experiment_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_experiment_pub_id',
- ],
- 'unique keys' => [
- 'nd_experiment_pub_c1' => [
- 0 => 'nd_experiment_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'nd_experiment_pub_idx1' => [
- 0 => 'nd_experiment_id',
- ],
- 'nd_experiment_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'nd_experiment' => [
- 'table' => 'nd_experiment',
- 'columns' => [
- 'nd_experiment_id' => 'nd_experiment_id',
- ],
- ],
- ],
- 'table' => 'nd_experiment_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_experiment_stock()
- * Purpose: To describe the structure of 'nd_experiment_stock' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_experiment_stock' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_experiment_stock() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_experiment_stock_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_experiment_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'stock_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_experiment_stock_id',
- ],
- 'unique keys' => [],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'stock_id' => 'stock_id',
- ],
- ],
- 'nd_experiment' => [
- 'table' => 'nd_experiment',
- 'columns' => [
- 'nd_experiment_id' => 'nd_experiment_id',
- ],
- ],
- ],
- 'table' => 'nd_experiment_stock',
- 'referring_tables' => [
- 0 => 'nd_experiment_stock_dbxref',
- 1 => 'nd_experiment_stockprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_experiment_stock_dbxref()
- * Purpose: To describe the structure of 'nd_experiment_stock_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_experiment_stock_dbxref' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_experiment_stock_dbxref() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_experiment_stock_dbxref_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_experiment_stock_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_experiment_stock_dbxref_id',
- ],
- 'unique keys' => [],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'nd_experiment_stock' => [
- 'table' => 'nd_experiment_stock',
- 'columns' => [
- 'nd_experiment_stock_id' => 'nd_experiment_stock_id',
- ],
- ],
- ],
- 'table' => 'nd_experiment_stock_dbxref',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_experiment_stockprop()
- * Purpose: To describe the structure of 'nd_experiment_stockprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_experiment_stockprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_experiment_stockprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_experiment_stockprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_experiment_stock_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_experiment_stockprop_id',
- ],
- 'unique keys' => [
- 'nd_experiment_stockprop_c1' => [
- 0 => 'nd_experiment_stock_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'nd_experiment_stock' => [
- 'table' => 'nd_experiment_stock',
- 'columns' => [
- 'nd_experiment_stock_id' => 'nd_experiment_stock_id',
- ],
- ],
- ],
- 'table' => 'nd_experiment_stockprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_experimentprop()
- * Purpose: To describe the structure of 'nd_experimentprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_experimentprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_experimentprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_experimentprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_experiment_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_experimentprop_id',
- ],
- 'unique keys' => [
- 'nd_experimentprop_c1' => [
- 0 => 'nd_experiment_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'nd_experiment' => [
- 'table' => 'nd_experiment',
- 'columns' => [
- 'nd_experiment_id' => 'nd_experiment_id',
- ],
- ],
- ],
- 'table' => 'nd_experimentprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_geolocation()
- * Purpose: To describe the structure of 'nd_geolocation' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_geolocation' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_geolocation() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_geolocation_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'latitude' => [
- 'description' => '',
- 'type' => 'float',
- 'not null' => FALSE,
- ],
- 'longitude' => [
- 'description' => '',
- 'type' => 'float',
- 'not null' => FALSE,
- ],
- 'geodetic_datum' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '32',
- 'not null' => FALSE,
- ],
- 'altitude' => [
- 'description' => '',
- 'type' => 'float',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_geolocation_id',
- ],
- 'unique keys' => [],
- 'foreign keys' => [],
- 'table' => 'nd_geolocation',
- 'referring_tables' => [
- 0 => 'nd_experiment',
- 1 => 'nd_geolocationprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_geolocationprop()
- * Purpose: To describe the structure of 'nd_geolocationprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_geolocationprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_geolocationprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_geolocationprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_geolocation_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_geolocationprop_id',
- ],
- 'unique keys' => [
- 'nd_geolocationprop_c1' => [
- 0 => 'nd_geolocation_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'nd_geolocation' => [
- 'table' => 'nd_geolocation',
- 'columns' => [
- 'nd_geolocation_id' => 'nd_geolocation_id',
- ],
- ],
- ],
- 'table' => 'nd_geolocationprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_protocol()
- * Purpose: To describe the structure of 'nd_protocol' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_protocol' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_protocol() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_protocol_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_protocol_id',
- ],
- 'unique keys' => [
- 'name' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- 'table' => 'nd_protocol',
- 'referring_tables' => [
- 0 => 'nd_experiment_protocol',
- 1 => 'nd_protocol_reagent',
- 2 => 'nd_protocolprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_protocol_reagent()
- * Purpose: To describe the structure of 'nd_protocol_reagent' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_protocol_reagent' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_protocol_reagent() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_protocol_reagent_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_protocol_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'reagent_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_protocol_reagent_id',
- ],
- 'unique keys' => [],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'nd_protocol' => [
- 'table' => 'nd_protocol',
- 'columns' => [
- 'nd_protocol_id' => 'nd_protocol_id',
- ],
- ],
- 'nd_reagent' => [
- 'table' => 'nd_reagent',
- 'columns' => [
- 'reagent_id' => 'nd_reagent_id',
- ],
- ],
- ],
- 'table' => 'nd_protocol_reagent',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_protocolprop()
- * Purpose: To describe the structure of 'nd_protocolprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_protocolprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_protocolprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_protocolprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_protocol_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_protocolprop_id',
- ],
- 'unique keys' => [
- 'nd_protocolprop_c1' => [
- 0 => 'nd_protocol_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'nd_protocol' => [
- 'table' => 'nd_protocol',
- 'columns' => [
- 'nd_protocol_id' => 'nd_protocol_id',
- ],
- ],
- ],
- 'table' => 'nd_protocolprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_reagent()
- * Purpose: To describe the structure of 'nd_reagent' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_reagent' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_reagent() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_reagent_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '80',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_reagent_id',
- ],
- 'unique keys' => [],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- 'table' => 'nd_reagent',
- 'referring_tables' => [
- 0 => 'nd_protocol_reagent',
- 1 => 'nd_reagent_relationship',
- 3 => 'nd_reagentprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_reagent_relationship()
- * Purpose: To describe the structure of 'nd_reagent_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_reagent_relationship' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_reagent_relationship() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_reagent_relationship_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'subject_reagent_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_reagent_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_reagent_relationship_id',
- ],
- 'unique keys' => [],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'nd_reagent' => [
- 'table' => 'nd_reagent',
- 'columns' => [
- 'subject_reagent_id' => 'nd_reagent_id',
- 'object_reagent_id' => 'nd_reagent_id',
- ],
- ],
- ],
- 'table' => 'nd_reagent_relationship',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_nd_reagentprop()
- * Purpose: To describe the structure of 'nd_reagentprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'nd_reagentprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_nd_reagentprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'nd_reagentprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'nd_reagent_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'nd_reagentprop_id',
- ],
- 'unique keys' => [
- 'nd_reagentprop_c1' => [
- 0 => 'nd_reagent_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'nd_reagent' => [
- 'table' => 'nd_reagent',
- 'columns' => [
- 'nd_reagent_id' => 'nd_reagent_id',
- ],
- ],
- ],
- 'table' => 'nd_reagentprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_organism()
- * Purpose: To describe the structure of 'organism' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'organism' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_organism() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'organism_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'abbreviation' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'genus' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- 'species' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- 'common_name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'comment' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'organism_id',
- ],
- 'unique keys' => [
- 'organism_c1' => [
- 0 => 'genus',
- 1 => 'species',
- ],
- ],
- 'foreign keys' => [
- ],
- 'referring_tables' => [
- 0 => 'biomaterial',
- 1 => 'cell_line',
- 2 => 'feature',
- 3 => 'library',
- 4 => 'organism_dbxref',
- 5 => 'organismprop',
- 6 => 'phenotype_comparison',
- 7 => 'phylonode_organism',
- 8 => 'stock',
- ],
- 'table' => 'organism',
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_organism_dbxref()
- * Purpose: To describe the structure of 'organism_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'organism_dbxref' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_organism_dbxref() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'organism_dbxref_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'organism_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'organism_dbxref_id',
- ],
- 'unique keys' => [
- 'organism_dbxref_c1' => [
- 0 => 'organism_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'organism_dbxref_idx1' => [
- 0 => 'organism_id',
- ],
- 'organism_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- ],
- 'table' => 'organism_dbxref',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_organismprop()
- * Purpose: To describe the structure of 'organismprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'organismprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_organismprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'organismprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'organism_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'organismprop_id',
- ],
- 'unique keys' => [
- 'organismprop_c1' => [
- 0 => 'organism_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'organismprop_idx1' => [
- 0 => 'organism_id',
- ],
- 'organismprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- 'table' => 'organismprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_phendesc()
- * Purpose: To describe the structure of 'phendesc' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phendesc' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_phendesc() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'phendesc_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'genotype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'environment_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'phendesc_id',
- ],
- 'unique keys' => [
- 'phendesc_c1' => [
- 0 => 'genotype_id',
- 1 => 'environment_id',
- 2 => 'type_id',
- 3 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'phendesc_idx1' => [
- 0 => 'genotype_id',
- ],
- 'phendesc_idx2' => [
- 0 => 'environment_id',
- ],
- 'phendesc_idx3' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'genotype' => [
- 'table' => 'genotype',
- 'columns' => [
- 'genotype_id' => 'genotype_id',
- ],
- ],
- 'environment' => [
- 'table' => 'environment',
- 'columns' => [
- 'environment_id' => 'environment_id',
- ],
- ],
- ],
- 'table' => 'phendesc',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_phenotype()
- * Purpose: To describe the structure of 'phenotype' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phenotype' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_phenotype() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'phenotype_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'uniquename' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'observable_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'attr_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'cvalue_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'assay_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'phenotype_id',
- ],
- 'unique keys' => [
- 'phenotype_c1' => [
- 0 => 'uniquename',
- ],
- ],
- 'indexes' => [
- 'phenotype_idx1' => [
- 0 => 'cvalue_id',
- ],
- 'phenotype_idx2' => [
- 0 => 'observable_id',
- ],
- 'phenotype_idx3' => [
- 0 => 'attr_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'observable_id' => 'cvterm_id',
- 'attr_id' => 'cvterm_id',
- 'cvalue_id' => 'cvterm_id',
- 'assay_id' => 'cvterm_id',
- ],
- ],
- ],
- 'table' => 'phenotype',
- 'referring_tables' => [
- 0 => 'feature_phenotype',
- 1 => 'nd_experiment_phenotype',
- 2 => 'phenotype_comparison',
- 4 => 'phenotype_cvterm',
- 5 => 'phenstatement',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_phenotype_comparison()
- * Purpose: To describe the structure of 'phenotype_comparison' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phenotype_comparison' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_phenotype_comparison() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'phenotype_comparison_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'genotype1_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'environment1_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'genotype2_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'environment2_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'phenotype1_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'phenotype2_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'organism_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'phenotype_comparison_id',
- ],
- 'unique keys' => [
- 'phenotype_comparison_c1' => [
- 0 => 'genotype1_id',
- 1 => 'environment1_id',
- 2 => 'genotype2_id',
- 3 => 'environment2_id',
- 4 => 'phenotype1_id',
- 5 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'phenotype_comparison_idx1' => [
- 0 => 'genotype1_id',
- ],
- 'phenotype_comparison_idx2' => [
- 0 => 'genotype2_id',
- ],
- 'phenotype_comparison_idx4' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'genotype' => [
- 'table' => 'genotype',
- 'columns' => [
- 'genotype1_id' => 'genotype_id',
- 'genotype2_id' => 'genotype_id',
- ],
- ],
- 'environment' => [
- 'table' => 'environment',
- 'columns' => [
- 'environment1_id' => 'environment_id',
- 'environment2_id' => 'environment_id',
- ],
- ],
- 'phenotype' => [
- 'table' => 'phenotype',
- 'columns' => [
- 'phenotype1_id' => 'phenotype_id',
- 'phenotype2_id' => 'phenotype_id',
- ],
- ],
- ],
- 'table' => 'phenotype_comparison',
- 'referring_tables' => [
- 0 => 'phenotype_comparison_cvterm',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_phenotype_comparison_cvterm()
- * Purpose: To describe the structure of 'phenotype_comparison_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phenotype_comparison_cvterm' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_phenotype_comparison_cvterm() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'phenotype_comparison_cvterm_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'phenotype_comparison_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'phenotype_comparison_cvterm_id',
- ],
- 'unique keys' => [
- 'phenotype_comparison_cvterm_c1' => [
- 0 => 'phenotype_comparison_id',
- 1 => 'cvterm_id',
- ],
- ],
- 'indexes' => [
- 'phenotype_comparison_cvterm_idx1' => [
- 0 => 'phenotype_comparison_id',
- ],
- 'phenotype_comparison_cvterm_idx2' => [
- 0 => 'cvterm_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'phenotype_comparison' => [
- 'table' => 'phenotype_comparison',
- 'columns' => [
- 'phenotype_comparison_id' => 'phenotype_comparison_id',
- ],
- ],
- ],
- 'table' => 'phenotype_comparison_cvterm',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_phenotype_cvterm()
- * Purpose: To describe the structure of 'phenotype_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phenotype_cvterm' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_phenotype_cvterm() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'phenotype_cvterm_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'phenotype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'phenotype_cvterm_id',
- ],
- 'unique keys' => [
- 'phenotype_cvterm_c1' => [
- 0 => 'phenotype_id',
- 1 => 'cvterm_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'phenotype_cvterm_idx1' => [
- 0 => 'phenotype_id',
- ],
- 'phenotype_cvterm_idx2' => [
- 0 => 'cvterm_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'phenotype' => [
- 'table' => 'phenotype',
- 'columns' => [
- 'phenotype_id' => 'phenotype_id',
- ],
- ],
- ],
- 'table' => 'phenotype_cvterm',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_phenstatement()
- * Purpose: To describe the structure of 'phenstatement' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phenstatement' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_phenstatement() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'phenstatement_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'genotype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'environment_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'phenotype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'phenstatement_id',
- ],
- 'unique keys' => [
- 'phenstatement_c1' => [
- 0 => 'genotype_id',
- 1 => 'phenotype_id',
- 2 => 'environment_id',
- 3 => 'type_id',
- 4 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'phenstatement_idx1' => [
- 0 => 'genotype_id',
- ],
- 'phenstatement_idx2' => [
- 0 => 'phenotype_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'genotype' => [
- 'table' => 'genotype',
- 'columns' => [
- 'genotype_id' => 'genotype_id',
- ],
- ],
- 'environment' => [
- 'table' => 'environment',
- 'columns' => [
- 'environment_id' => 'environment_id',
- ],
- ],
- 'phenotype' => [
- 'table' => 'phenotype',
- 'columns' => [
- 'phenotype_id' => 'phenotype_id',
- ],
- ],
- ],
- 'table' => 'phenstatement',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_phylonode()
- * Purpose: To describe the structure of 'phylonode' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylonode' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_phylonode() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'phylonode_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'phylotree_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'parent_phylonode_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'left_idx' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'right_idx' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'label' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'distance' => [
- 'description' => '',
- 'type' => 'float',
- 'size' => 'big',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'phylonode_id',
- ],
- 'unique keys' => [
- 'phylotree_id' => [
- 0 => 'phylotree_id',
- 1 => 'left_idx',
- ],
- 'phylonode_phylotree_id_key1' => [
- 0 => 'phylotree_id',
- 1 => 'right_idx',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'phylonode' => [
- 'table' => 'phylonode',
- 'columns' => [
- 'parent_phylonode_id' => 'phylonode_id',
- ],
- ],
- 'phylotree' => [
- 'table' => 'phylotree',
- 'columns' => [
- 'phylotree_id' => 'phylotree_id',
- ],
- ],
- ],
- 'table' => 'phylonode',
- 'referring_tables' => [
- 0 => 'phylonode',
- 1 => 'phylonode_dbxref',
- 2 => 'phylonode_organism',
- 3 => 'phylonode_pub',
- 4 => 'phylonode_relationship',
- 6 => 'phylonodeprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_phylonode_dbxref()
- * Purpose: To describe the structure of 'phylonode_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylonode_dbxref' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_phylonode_dbxref() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'phylonode_dbxref_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'phylonode_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'phylonode_dbxref_id',
- ],
- 'unique keys' => [
- 'phylonode_id' => [
- 0 => 'phylonode_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'phylonode_dbxref_idx1' => [
- 0 => 'phylonode_id',
- ],
- 'phylonode_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'phylonode' => [
- 'table' => 'phylonode',
- 'columns' => [
- 'phylonode_id' => 'phylonode_id',
- ],
- ],
- ],
- 'table' => 'phylonode_dbxref',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_phylonode_organism()
- * Purpose: To describe the structure of 'phylonode_organism' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylonode_organism' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_phylonode_organism() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'phylonode_organism_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'phylonode_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'organism_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'phylonode_organism_id',
- ],
- 'unique keys' => [
- 'phylonode_id' => [
- 0 => 'phylonode_id',
- ],
- ],
- 'indexes' => [
- 'phylonode_organism_idx1' => [
- 0 => 'phylonode_id',
- ],
- 'phylonode_organism_idx2' => [
- 0 => 'organism_id',
- ],
- ],
- 'foreign keys' => [
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- 'phylonode' => [
- 'table' => 'phylonode',
- 'columns' => [
- 'phylonode_id' => 'phylonode_id',
- ],
- ],
- ],
- 'table' => 'phylonode_organism',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_phylonode_pub()
- * Purpose: To describe the structure of 'phylonode_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylonode_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_phylonode_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'phylonode_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'phylonode_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'phylonode_pub_id',
- ],
- 'unique keys' => [
- 'phylonode_id' => [
- 0 => 'phylonode_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'phylonode_pub_idx1' => [
- 0 => 'phylonode_id',
- ],
- 'phylonode_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'phylonode' => [
- 'table' => 'phylonode',
- 'columns' => [
- 'phylonode_id' => 'phylonode_id',
- ],
- ],
- ],
- 'table' => 'phylonode_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_phylonode_relationship()
- * Purpose: To describe the structure of 'phylonode_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylonode_relationship' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_phylonode_relationship() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'phylonode_relationship_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'subject_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'phylotree_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'phylonode_relationship_id',
- ],
- 'unique keys' => [
- 'subject_id' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'phylonode_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'phylonode_relationship_idx2' => [
- 0 => 'object_id',
- ],
- 'phylonode_relationship_idx3' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'phylonode' => [
- 'table' => 'phylonode',
- 'columns' => [
- 'subject_id' => 'phylonode_id',
- 'object_id' => 'phylonode_id',
- ],
- ],
- 'phylotree' => [
- 'table' => 'phylotree',
- 'columns' => [
- 'phylotree_id' => 'phylotree_id',
- ],
- ],
- ],
- 'table' => 'phylonode_relationship',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_phylonodeprop()
- * Purpose: To describe the structure of 'phylonodeprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylonodeprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_phylonodeprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'phylonodeprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'phylonode_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- 'default' => '',
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'phylonodeprop_id',
- ],
- 'unique keys' => [
- 'phylonode_id' => [
- 0 => 'phylonode_id',
- 1 => 'type_id',
- 2 => 'value',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'phylonodeprop_idx1' => [
- 0 => 'phylonode_id',
- ],
- 'phylonodeprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'phylonode' => [
- 'table' => 'phylonode',
- 'columns' => [
- 'phylonode_id' => 'phylonode_id',
- ],
- ],
- ],
- 'table' => 'phylonodeprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_phylotree()
- * Purpose: To describe the structure of 'phylotree' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylotree' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_phylotree() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'phylotree_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'analysis_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'comment' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'phylotree_id',
- ],
- 'unique keys' => [],
- 'indexes' => [
- 'phylotree_idx1' => [
- 0 => 'phylotree_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'analysis' => [
- 'table' => 'analysis',
- 'columns' => [
- 'analysis_id' => 'analysis_id',
- ],
- ],
- ],
- 'table' => 'phylotree',
- 'referring_tables' => [
- 0 => 'phylonode',
- 1 => 'phylonode_relationship',
- 2 => 'phylotree_pub',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_phylotree_pub()
- * Purpose: To describe the structure of 'phylotree_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylotree_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_phylotree_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'phylotree_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'phylotree_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'phylotree_pub_id',
- ],
- 'unique keys' => [
- 'phylotree_id' => [
- 0 => 'phylotree_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'phylotree_pub_idx1' => [
- 0 => 'phylotree_id',
- ],
- 'phylotree_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'phylotree' => [
- 'table' => 'phylotree',
- 'columns' => [
- 'phylotree_id' => 'phylotree_id',
- ],
- ],
- ],
- 'table' => 'phylotree_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_project()
- * Purpose: To describe the structure of 'project' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'project' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_project() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'project_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'project_id',
- ],
- 'unique keys' => [
- 'project_c1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- ],
- 'table' => 'project',
- 'referring_tables' => [
- 0 => 'assay_project',
- 1 => 'nd_experiment_project',
- 2 => 'project_contact',
- 10 => 'project_pub',
- 18 => 'project_relationship',
- 34 => 'projectprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_project_contact()
- * Purpose: To describe the structure of 'project_contact' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'project_contact' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_project_contact() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'project_contact_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'project_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'contact_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'project_contact_id',
- ],
- 'unique keys' => [
- 'project_contact_c1' => [
- 0 => 'project_id',
- 1 => 'contact_id',
- ],
- ],
- 'indexes' => [
- 'project_contact_idx1' => [
- 0 => 'project_id',
- ],
- 'project_contact_idx2' => [
- 0 => 'contact_id',
- ],
- ],
- 'foreign keys' => [
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'contact_id' => 'contact_id',
- ],
- ],
- 'project' => [
- 'table' => 'project',
- 'columns' => [
- 'project_id' => 'project_id',
- ],
- ],
- ],
- 'table' => 'project_contact',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_project_pub()
- * Purpose: To describe the structure of 'project_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'project_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_project_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'project_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'project_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'project_pub_id',
- ],
- 'unique keys' => [
- 'project_pub_c1' => [
- 0 => 'project_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'project_pub_idx1' => [
- 0 => 'project_id',
- ],
- 'project_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'project' => [
- 'table' => 'project',
- 'columns' => [
- 'project_id' => 'project_id',
- ],
- ],
- ],
- 'table' => 'project_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_project_relationship()
- * Purpose: To describe the structure of 'project_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'project_relationship' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_project_relationship() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'project_relationship_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'subject_project_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_project_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'project_relationship_id',
- ],
- 'unique keys' => [
- 'project_relationship_c1' => [
- 0 => 'subject_project_id',
- 1 => 'object_project_id',
- 2 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'project' => [
- 'table' => 'project',
- 'columns' => [
- 'subject_project_id' => 'project_id',
- 'object_project_id' => 'project_id',
- ],
- ],
- ],
- 'table' => 'project_relationship',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_projectprop()
- * Purpose: To describe the structure of 'projectprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'projectprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_projectprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'projectprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'project_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'projectprop_id',
- ],
- 'unique keys' => [
- 'projectprop_c1' => [
- 0 => 'project_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'project' => [
- 'table' => 'project',
- 'columns' => [
- 'project_id' => 'project_id',
- ],
- ],
- ],
- 'table' => 'projectprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_protocol()
- * Purpose: To describe the structure of 'protocol' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'protocol' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_protocol() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'protocol_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'uri' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'protocoldescription' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'hardwaredescription' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'softwaredescription' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'protocol_id',
- ],
- 'unique keys' => [
- 'protocol_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- 'protocol_idx1' => [
- 0 => 'type_id',
- ],
- 'protocol_idx2' => [
- 0 => 'pub_id',
- ],
- 'protocol_idx3' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- 'table' => 'protocol',
- 'referring_tables' => [
- 0 => 'acquisition',
- 1 => 'arraydesign',
- 2 => 'assay',
- 3 => 'protocolparam',
- 4 => 'quantification',
- 5 => 'treatment',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_protocolparam()
- * Purpose: To describe the structure of 'protocolparam' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'protocolparam' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_protocolparam() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'protocolparam_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'protocol_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'datatype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'unittype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'protocolparam_id',
- ],
- 'unique keys' => [],
- 'indexes' => [
- 'protocolparam_idx1' => [
- 0 => 'protocol_id',
- ],
- 'protocolparam_idx2' => [
- 0 => 'datatype_id',
- ],
- 'protocolparam_idx3' => [
- 0 => 'unittype_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'datatype_id' => 'cvterm_id',
- 'unittype_id' => 'cvterm_id',
- ],
- ],
- 'protocol' => [
- 'table' => 'protocol',
- 'columns' => [
- 'protocol_id' => 'protocol_id',
- ],
- ],
- ],
- 'table' => 'protocolparam',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_pub()
- * Purpose: To describe the structure of 'pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'title' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'volumetitle' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'volume' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'series_name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'issue' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'pyear' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'pages' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'miniref' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'uniquename' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_obsolete' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => FALSE,
- 'default' => 'false',
- ],
- 'publisher' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'pubplace' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'pub_id',
- ],
- 'unique keys' => [
- 'pub_c1' => [
- 0 => 'uniquename',
- ],
- ],
- 'indexes' => [
- 'pub_idx1' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- 'table' => 'pub',
- 'referring_tables' => [
- 0 => 'cell_line_cvterm',
- 1 => 'cell_line_feature',
- 2 => 'cell_line_library',
- 3 => 'cell_line_pub',
- 4 => 'cell_line_synonym',
- 5 => 'cell_lineprop_pub',
- 6 => 'expression_pub',
- 7 => 'feature_cvterm',
- 8 => 'feature_cvterm_pub',
- 9 => 'feature_expression',
- 10 => 'feature_pub',
- 11 => 'feature_relationship_pub',
- 12 => 'feature_relationshipprop_pub',
- 13 => 'feature_synonym',
- 14 => 'featureloc_pub',
- 15 => 'featuremap_pub',
- 16 => 'featureprop_pub',
- 17 => 'library_cvterm',
- 18 => 'library_pub',
- 19 => 'library_synonym',
- 20 => 'libraryprop_pub',
- 21 => 'nd_experiment_pub',
- 22 => 'phendesc',
- 23 => 'phenotype_comparison',
- 24 => 'phenotype_comparison_cvterm',
- 25 => 'phenstatement',
- 26 => 'phylonode_pub',
- 27 => 'phylotree_pub',
- 28 => 'project_pub',
- 36 => 'protocol',
- 37 => 'pub_dbxref',
- 38 => 'pub_relationship',
- 40 => 'pubauthor',
- 41 => 'pubprop',
- 42 => 'stock_cvterm',
- 43 => 'stock_pub',
- 44 => 'stock_relationship_cvterm',
- 52 => 'stock_relationship_pub',
- 53 => 'stockprop_pub',
- 54 => 'study',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_pub_dbxref()
- * Purpose: To describe the structure of 'pub_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'pub_dbxref' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_pub_dbxref() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'pub_dbxref_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_current' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'true',
- ],
- ],
- 'primary key' => [
- 0 => 'pub_dbxref_id',
- ],
- 'unique keys' => [
- 'pub_dbxref_c1' => [
- 0 => 'pub_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'pub_dbxref_idx1' => [
- 0 => 'pub_id',
- ],
- 'pub_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- 'table' => 'pub_dbxref',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_pub_relationship()
- * Purpose: To describe the structure of 'pub_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'pub_relationship' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_pub_relationship() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'pub_relationship_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'subject_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'pub_relationship_id',
- ],
- 'unique keys' => [
- 'pub_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'pub_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'pub_relationship_idx2' => [
- 0 => 'object_id',
- ],
- 'pub_relationship_idx3' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'subject_id' => 'pub_id',
- 'object_id' => 'pub_id',
- ],
- ],
- ],
- 'table' => 'pub_relationship',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_pubauthor()
- * Purpose: To describe the structure of 'pubauthor' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'pubauthor' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_pubauthor() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'pubauthor_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'editor' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => FALSE,
- 'default' => 'false',
- ],
- 'surname' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '100',
- 'not null' => TRUE,
- ],
- 'givennames' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '100',
- 'not null' => FALSE,
- ],
- 'suffix' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '100',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'pubauthor_id',
- ],
- 'unique keys' => [
- 'pubauthor_c1' => [
- 0 => 'pub_id',
- 1 => 'rank',
- ],
- ],
- 'indexes' => [
- 'pubauthor_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- 'table' => 'pubauthor',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_pubprop()
- * Purpose: To describe the structure of 'pubprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'pubprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_pubprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'pubprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'pubprop_id',
- ],
- 'unique keys' => [
- 'pubprop_c1' => [
- 0 => 'pub_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'pubprop_idx1' => [
- 0 => 'pub_id',
- ],
- 'pubprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- 'table' => 'pubprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_quantification()
- * Purpose: To describe the structure of 'quantification' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'quantification' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_quantification() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'quantification_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'acquisition_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'operator_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'protocol_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'analysis_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'quantificationdate' => [
- 'description' => '',
- 'type' => 'datetime',
- 'not null' => FALSE,
- 'default' => 'now()',
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'uri' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'quantification_id',
- ],
- 'unique keys' => [
- 'quantification_c1' => [
- 0 => 'name',
- 1 => 'analysis_id',
- ],
- ],
- 'indexes' => [
- 'quantification_idx1' => [
- 0 => 'acquisition_id',
- ],
- 'quantification_idx2' => [
- 0 => 'operator_id',
- ],
- 'quantification_idx3' => [
- 0 => 'protocol_id',
- ],
- 'quantification_idx4' => [
- 0 => 'analysis_id',
- ],
- ],
- 'foreign keys' => [
- 'analysis' => [
- 'table' => 'analysis',
- 'columns' => [
- 'analysis_id' => 'analysis_id',
- ],
- ],
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'operator_id' => 'contact_id',
- ],
- ],
- 'protocol' => [
- 'table' => 'protocol',
- 'columns' => [
- 'protocol_id' => 'protocol_id',
- ],
- ],
- 'acquisition' => [
- 'table' => 'acquisition',
- 'columns' => [
- 'acquisition_id' => 'acquisition_id',
- ],
- ],
- ],
- 'table' => 'quantification',
- 'referring_tables' => [
- 0 => 'elementresult',
- 1 => 'quantification_relationship',
- 3 => 'quantificationprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_quantification_relationship()
- * Purpose: To describe the structure of 'quantification_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'quantification_relationship' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_quantification_relationship() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'quantification_relationship_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'subject_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'quantification_relationship_id',
- ],
- 'unique keys' => [
- 'quantification_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'quantification_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'quantification_relationship_idx2' => [
- 0 => 'type_id',
- ],
- 'quantification_relationship_idx3' => [
- 0 => 'object_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'quantification' => [
- 'table' => 'quantification',
- 'columns' => [
- 'subject_id' => 'quantification_id',
- 'object_id' => 'quantification_id',
- ],
- ],
- ],
- 'table' => 'quantification_relationship',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_quantificationprop()
- * Purpose: To describe the structure of 'quantificationprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'quantificationprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_quantificationprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'quantificationprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'quantification_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'quantificationprop_id',
- ],
- 'unique keys' => [
- 'quantificationprop_c1' => [
- 0 => 'quantification_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'quantificationprop_idx1' => [
- 0 => 'quantification_id',
- ],
- 'quantificationprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'quantification' => [
- 'table' => 'quantification',
- 'columns' => [
- 'quantification_id' => 'quantification_id',
- ],
- ],
- ],
- 'table' => 'quantificationprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stock()
- * Purpose: To describe the structure of 'stock' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stock() {
- $description = [
- 'description' => 'Any stock can be globally identified by the combination of organism, uniquename and stock type. A stock is the physical entities, either living or preserved, held by collections. Stocks belong to a collection; they have IDs, type, organism, description and may have a genotype.',
- 'fields' => [
- 'stock_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'organism_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'uniquename' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_obsolete' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'false',
- ],
- ],
- 'primary key' => [
- 0 => 'stock_id',
- ],
- 'unique keys' => [
- 'stock_c1' => [
- 0 => 'organism_id',
- 1 => 'uniquename',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'stock_idx1' => [
- 0 => 'dbxref_id',
- ],
- 'stock_idx2' => [
- 0 => 'organism_id',
- ],
- 'stock_idx3' => [
- 0 => 'type_id',
- ],
- 'stock_idx4' => [
- 0 => 'uniquename',
- ],
- 'stock_name_ind1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- ],
- 'referring_tables' => [
- 0 => 'nd_experiment_stock',
- 1 => 'stock_cvterm',
- 2 => 'stock_dbxref',
- 3 => 'stock_genotype',
- 4 => 'stock_pub',
- 5 => 'stock_relationship',
- 7 => 'stockcollection_stock',
- 8 => 'stockprop',
- ],
- 'table' => 'stock',
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stock_cvterm()
- * Purpose: To describe the structure of 'stock_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_cvterm' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stock_cvterm() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'stock_cvterm_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'stock_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_not' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'false',
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'stock_cvterm_id',
- ],
- 'unique keys' => [
- 'stock_cvterm_c1' => [
- 0 => 'stock_id',
- 1 => 'cvterm_id',
- 2 => 'pub_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'stock_cvterm_idx1' => [
- 0 => 'stock_id',
- ],
- 'stock_cvterm_idx2' => [
- 0 => 'cvterm_id',
- ],
- 'stock_cvterm_idx3' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'stock_id' => 'stock_id',
- ],
- ],
- ],
- 'table' => 'stock_cvterm',
- 'referring_tables' => [
- 0 => 'stock_cvtermprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stock_cvtermprop()
- * Purpose: To describe the structure of 'stock_cvtermprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_cvtermprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stock_cvtermprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'stock_cvtermprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'stock_cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'stock_cvtermprop_id',
- ],
- 'unique keys' => [
- 'stock_cvtermprop_c1' => [
- 0 => 'stock_cvterm_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'stock_cvtermprop_idx1' => [
- 0 => 'stock_cvterm_id',
- ],
- 'stock_cvtermprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'stock_cvterm' => [
- 'table' => 'stock_cvterm',
- 'columns' => [
- 'stock_cvterm_id' => 'stock_cvterm_id',
- ],
- ],
- ],
- 'table' => 'stock_cvtermprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stock_dbxref()
- * Purpose: To describe the structure of 'stock_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_dbxref' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stock_dbxref() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'stock_dbxref_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'stock_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'is_current' => [
- 'description' => '',
- 'type' => 'boolean',
- 'not null' => TRUE,
- 'default' => 'true',
- ],
- ],
- 'primary key' => [
- 0 => 'stock_dbxref_id',
- ],
- 'unique keys' => [
- 'stock_dbxref_c1' => [
- 0 => 'stock_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'stock_dbxref_idx1' => [
- 0 => 'stock_id',
- ],
- 'stock_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'stock_id' => 'stock_id',
- ],
- ],
- ],
- 'table' => 'stock_dbxref',
- 'referring_tables' => [
- 0 => 'stock_dbxrefprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stock_dbxrefprop()
- * Purpose: To describe the structure of 'stock_dbxrefprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_dbxrefprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stock_dbxrefprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'stock_dbxrefprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'stock_dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'stock_dbxrefprop_id',
- ],
- 'unique keys' => [
- 'stock_dbxrefprop_c1' => [
- 0 => 'stock_dbxref_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'stock_dbxrefprop_idx1' => [
- 0 => 'stock_dbxref_id',
- ],
- 'stock_dbxrefprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'stock_dbxref' => [
- 'table' => 'stock_dbxref',
- 'columns' => [
- 'stock_dbxref_id' => 'stock_dbxref_id',
- ],
- ],
- ],
- 'table' => 'stock_dbxrefprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stock_genotype()
- * Purpose: To describe the structure of 'stock_genotype' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_genotype' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stock_genotype() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'stock_genotype_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'stock_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'genotype_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'stock_genotype_id',
- ],
- 'unique keys' => [
- 'stock_genotype_c1' => [
- 0 => 'stock_id',
- 1 => 'genotype_id',
- ],
- ],
- 'indexes' => [
- 'stock_genotype_idx1' => [
- 0 => 'stock_id',
- ],
- 'stock_genotype_idx2' => [
- 0 => 'genotype_id',
- ],
- ],
- 'foreign keys' => [
- 'genotype' => [
- 'table' => 'genotype',
- 'columns' => [
- 'genotype_id' => 'genotype_id',
- ],
- ],
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'stock_id' => 'stock_id',
- ],
- ],
- ],
- 'table' => 'stock_genotype',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stock_pub()
- * Purpose: To describe the structure of 'stock_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stock_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'stock_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'stock_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'stock_pub_id',
- ],
- 'unique keys' => [
- 'stock_pub_c1' => [
- 0 => 'stock_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'stock_pub_idx1' => [
- 0 => 'stock_id',
- ],
- 'stock_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'stock_id' => 'stock_id',
- ],
- ],
- ],
- 'table' => 'stock_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stock_relationship()
- * Purpose: To describe the structure of 'stock_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_relationship' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stock_relationship() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'stock_relationship_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'subject_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'object_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'stock_relationship_id',
- ],
- 'unique keys' => [
- 'stock_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'stock_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'stock_relationship_idx2' => [
- 0 => 'object_id',
- ],
- 'stock_relationship_idx3' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'subject_id' => 'stock_id',
- 'object_id' => 'stock_id',
- ],
- ],
- ],
- 'table' => 'stock_relationship',
- 'referring_tables' => [
- 0 => 'stock_relationship_cvterm',
- 8 => 'stock_relationship_pub',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stock_relationship_cvterm()
- * Purpose: To describe the structure of 'stock_relationship_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_relationship_cvterm' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stock_relationship_cvterm() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'stock_relationship_cvterm_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'stock_relationship_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'cvterm_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'stock_relationship_cvterm_id',
- ],
- 'unique keys' => [],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'stock_relationship' => [
- 'table' => 'stock_relationship',
- 'columns' => [
- 'stock_relationship_id' => 'stock_relationship_id',
- ],
- ],
- ],
- 'table' => 'stock_relationship_cvterm',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stock_relationship_pub()
- * Purpose: To describe the structure of 'stock_relationship_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_relationship_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stock_relationship_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'stock_relationship_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'stock_relationship_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'stock_relationship_pub_id',
- ],
- 'unique keys' => [
- 'stock_relationship_pub_c1' => [
- 0 => 'stock_relationship_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'stock_relationship_pub_idx1' => [
- 0 => 'stock_relationship_id',
- ],
- 'stock_relationship_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'stock_relationship' => [
- 'table' => 'stock_relationship',
- 'columns' => [
- 'stock_relationship_id' => 'stock_relationship_id',
- ],
- ],
- ],
- 'table' => 'stock_relationship_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stockcollection()
- * Purpose: To describe the structure of 'stockcollection' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stockcollection' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stockcollection() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'stockcollection_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'contact_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => FALSE,
- ],
- 'uniquename' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'stockcollection_id',
- ],
- 'unique keys' => [
- 'stockcollection_c1' => [
- 0 => 'uniquename',
- 1 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'stockcollection_idx1' => [
- 0 => 'contact_id',
- ],
- 'stockcollection_idx2' => [
- 0 => 'type_id',
- ],
- 'stockcollection_idx3' => [
- 0 => 'uniquename',
- ],
- 'stockcollection_name_ind1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'contact_id' => 'contact_id',
- ],
- ],
- ],
- 'table' => 'stockcollection',
- 'referring_tables' => [
- 0 => 'stockcollection_stock',
- 1 => 'stockcollectionprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stockcollection_stock()
- * Purpose: To describe the structure of 'stockcollection_stock' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stockcollection_stock' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stockcollection_stock() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'stockcollection_stock_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'stockcollection_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'stock_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'stockcollection_stock_id',
- ],
- 'unique keys' => [
- 'stockcollection_stock_c1' => [
- 0 => 'stockcollection_id',
- 1 => 'stock_id',
- ],
- ],
- 'indexes' => [
- 'stockcollection_stock_idx1' => [
- 0 => 'stockcollection_id',
- ],
- 'stockcollection_stock_idx2' => [
- 0 => 'stock_id',
- ],
- ],
- 'foreign keys' => [
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'stock_id' => 'stock_id',
- ],
- ],
- 'stockcollection' => [
- 'table' => 'stockcollection',
- 'columns' => [
- 'stockcollection_id' => 'stockcollection_id',
- ],
- ],
- ],
- 'table' => 'stockcollection_stock',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stockcollectionprop()
- * Purpose: To describe the structure of 'stockcollectionprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stockcollectionprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stockcollectionprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'stockcollectionprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'stockcollection_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'stockcollectionprop_id',
- ],
- 'unique keys' => [
- 'stockcollectionprop_c1' => [
- 0 => 'stockcollection_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'stockcollectionprop_idx1' => [
- 0 => 'stockcollection_id',
- ],
- 'stockcollectionprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'stockcollection' => [
- 'table' => 'stockcollection',
- 'columns' => [
- 'stockcollection_id' => 'stockcollection_id',
- ],
- ],
- ],
- 'table' => 'stockcollectionprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stockprop()
- * Purpose: To describe the structure of 'stockprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stockprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stockprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'stockprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'stock_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'stockprop_id',
- ],
- 'unique keys' => [
- 'stockprop_c1' => [
- 0 => 'stock_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'stockprop_idx1' => [
- 0 => 'stock_id',
- ],
- 'stockprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'stock_id' => 'stock_id',
- ],
- ],
- ],
- 'table' => 'stockprop',
- 'referring_tables' => [
- 0 => 'stockprop_pub',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_stockprop_pub()
- * Purpose: To describe the structure of 'stockprop_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stockprop_pub' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_stockprop_pub() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'stockprop_pub_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'stockprop_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'stockprop_pub_id',
- ],
- 'unique keys' => [
- 'stockprop_pub_c1' => [
- 0 => 'stockprop_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'stockprop_pub_idx1' => [
- 0 => 'stockprop_id',
- ],
- 'stockprop_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'stockprop' => [
- 'table' => 'stockprop',
- 'columns' => [
- 'stockprop_id' => 'stockprop_id',
- ],
- ],
- ],
- 'table' => 'stockprop_pub',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_study()
- * Purpose: To describe the structure of 'study' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'study' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_study() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'study_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'contact_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'pub_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'dbxref_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'study_id',
- ],
- 'unique keys' => [
- 'study_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- 'study_idx1' => [
- 0 => 'contact_id',
- ],
- 'study_idx2' => [
- 0 => 'pub_id',
- ],
- 'study_idx3' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'contact_id' => 'contact_id',
- ],
- ],
- ],
- 'table' => 'study',
- 'referring_tables' => [
- 0 => 'study_assay',
- 1 => 'studydesign',
- 2 => 'studyprop',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_study_assay()
- * Purpose: To describe the structure of 'study_assay' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'study_assay' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_study_assay() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'study_assay_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'study_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'assay_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'study_assay_id',
- ],
- 'unique keys' => [
- 'study_assay_c1' => [
- 0 => 'study_id',
- 1 => 'assay_id',
- ],
- ],
- 'indexes' => [
- 'study_assay_idx1' => [
- 0 => 'study_id',
- ],
- 'study_assay_idx2' => [
- 0 => 'assay_id',
- ],
- ],
- 'foreign keys' => [
- 'assay' => [
- 'table' => 'assay',
- 'columns' => [
- 'assay_id' => 'assay_id',
- ],
- ],
- 'study' => [
- 'table' => 'study',
- 'columns' => [
- 'study_id' => 'study_id',
- ],
- ],
- ],
- 'table' => 'study_assay',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_studydesign()
- * Purpose: To describe the structure of 'studydesign' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'studydesign' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_studydesign() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'studydesign_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'study_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'studydesign_id',
- ],
- 'unique keys' => [],
- 'indexes' => [
- 'studydesign_idx1' => [
- 0 => 'study_id',
- ],
- ],
- 'foreign keys' => [
- 'study' => [
- 'table' => 'study',
- 'columns' => [
- 'study_id' => 'study_id',
- ],
- ],
- ],
- 'table' => 'studydesign',
- 'referring_tables' => [
- 0 => 'studydesignprop',
- 1 => 'studyfactor',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_studydesignprop()
- * Purpose: To describe the structure of 'studydesignprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'studydesignprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_studydesignprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'studydesignprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'studydesign_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'studydesignprop_id',
- ],
- 'unique keys' => [
- 'studydesignprop_c1' => [
- 0 => 'studydesign_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'studydesignprop_idx1' => [
- 0 => 'studydesign_id',
- ],
- 'studydesignprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'studydesign' => [
- 'table' => 'studydesign',
- 'columns' => [
- 'studydesign_id' => 'studydesign_id',
- ],
- ],
- ],
- 'table' => 'studydesignprop',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_studyfactor()
- * Purpose: To describe the structure of 'studyfactor' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'studyfactor' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_studyfactor() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'studyfactor_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'studydesign_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => TRUE,
- ],
- 'description' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'studyfactor_id',
- ],
- 'unique keys' => [],
- 'indexes' => [
- 'studyfactor_idx1' => [
- 0 => 'studydesign_id',
- ],
- 'studyfactor_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'studydesign' => [
- 'table' => 'studydesign',
- 'columns' => [
- 'studydesign_id' => 'studydesign_id',
- ],
- ],
- ],
- 'table' => 'studyfactor',
- 'referring_tables' => [
- 0 => 'studyfactorvalue',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_studyfactorvalue()
- * Purpose: To describe the structure of 'studyfactorvalue' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'studyfactorvalue' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_studyfactorvalue() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'studyfactorvalue_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'studyfactor_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'assay_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'factorvalue' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'studyfactorvalue_id',
- ],
- 'unique keys' => [],
- 'indexes' => [
- 'studyfactorvalue_idx1' => [
- 0 => 'studyfactor_id',
- ],
- 'studyfactorvalue_idx2' => [
- 0 => 'assay_id',
- ],
- ],
- 'foreign keys' => [
- 'assay' => [
- 'table' => 'assay',
- 'columns' => [
- 'assay_id' => 'assay_id',
- ],
- ],
- 'studyfactor' => [
- 'table' => 'studyfactor',
- 'columns' => [
- 'studyfactor_id' => 'studyfactor_id',
- ],
- ],
- ],
- 'table' => 'studyfactorvalue',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_studyprop()
- * Purpose: To describe the structure of 'studyprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'studyprop' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_studyprop() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'studyprop_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'study_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'value' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- ],
- 'primary key' => [
- 0 => 'studyprop_id',
- ],
- 'unique keys' => [
- 'study_id' => [
- 0 => 'study_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'studyprop_idx1' => [
- 0 => 'study_id',
- ],
- 'studyprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'study' => [
- 'table' => 'study',
- 'columns' => [
- 'study_id' => 'study_id',
- ],
- ],
- ],
- 'table' => 'studyprop',
- 'referring_tables' => [
- 0 => 'studyprop_feature',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_studyprop_feature()
- * Purpose: To describe the structure of 'studyprop_feature' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'studyprop_feature' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_studyprop_feature() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'studyprop_feature_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'studyprop_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'feature_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'studyprop_feature_id',
- ],
- 'unique keys' => [
- 'studyprop_id' => [
- 0 => 'studyprop_id',
- 1 => 'feature_id',
- ],
- ],
- 'indexes' => [
- 'studyprop_feature_idx1' => [
- 0 => 'studyprop_id',
- ],
- 'studyprop_feature_idx2' => [
- 0 => 'feature_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'studyprop' => [
- 'table' => 'studyprop',
- 'columns' => [
- 'studyprop_id' => 'studyprop_id',
- ],
- ],
- ],
- 'table' => 'studyprop_feature',
- 'referring_tables' => NULL,
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_synonym()
- * Purpose: To describe the structure of 'synonym' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'synonym' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_synonym() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'synonym_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'synonym_sgml' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '255',
- 'not null' => TRUE,
- ],
- ],
- 'primary key' => [
- 0 => 'synonym_id',
- ],
- 'unique keys' => [
- 'synonym_c1' => [
- 0 => 'name',
- 1 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'synonym_idx1' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- 'table' => 'synonym',
- 'referring_tables' => [
- 0 => 'cell_line_synonym',
- 1 => 'feature_synonym',
- 2 => 'library_synonym',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_tableinfo()
- * Purpose: To describe the structure of 'tableinfo' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'tableinfo' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_tableinfo() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'tableinfo_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '30',
- 'not null' => TRUE,
- ],
- 'primary_key_column' => [
- 'description' => '',
- 'type' => 'varchar',
- 'length' => '30',
- 'not null' => FALSE,
- ],
- 'is_view' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- 'view_on_table_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'superclass_table_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'is_updateable' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 1,
- ],
- 'modification_date' => [
- 'description' => '',
- 'type' => 'date',
- 'not null' => TRUE,
- 'default' => 'now()',
- ],
- ],
- 'primary key' => [
- 0 => 'tableinfo_id',
- ],
- 'unique keys' => [
- 'tableinfo_c1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- ],
- 'table' => 'tableinfo',
- 'referring_tables' => [
- 0 => 'control',
- 1 => 'magedocumentation',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_2_treatment()
- * Purpose: To describe the structure of 'treatment' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'treatment' table
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_2_treatment() {
- $description = [
- 'description' => '',
- 'fields' => [
- 'treatment_id' => [
- 'description' => '',
- 'type' => 'serial',
- 'not null' => TRUE,
- ],
- 'rank' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- 'default' => 0,
- ],
- 'biomaterial_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'type_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => TRUE,
- ],
- 'protocol_id' => [
- 'description' => '',
- 'type' => 'int',
- 'not null' => FALSE,
- ],
- 'name' => [
- 'description' => '',
- 'type' => 'text',
- 'not null' => FALSE,
- ],
- ],
- 'primary key' => [
- 0 => 'treatment_id',
- ],
- 'unique keys' => [],
- 'indexes' => [
- 'treatment_idx1' => [
- 0 => 'biomaterial_id',
- ],
- 'treatment_idx2' => [
- 0 => 'type_id',
- ],
- 'treatment_idx3' => [
- 0 => 'protocol_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'protocol' => [
- 'table' => 'protocol',
- 'columns' => [
- 'protocol_id' => 'protocol_id',
- ],
- ],
- 'biomaterial' => [
- 'table' => 'biomaterial',
- 'columns' => [
- 'biomaterial_id' => 'biomaterial_id',
- ],
- ],
- ],
- 'table' => 'treatment',
- 'referring_tables' => [
- 0 => 'biomaterial_treatment',
- ],
- ];
- return $description;
- }
- /**
- * Lists the table names in the v1.2 chado schema
- *
- * @return
- * An array containing all of the table names
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_get_v1_2_tables() {
- $tables = [
- 'acquisition',
- 'acquisition_relationship',
- 'acquisitionprop',
- 'analysis',
- 'analysisfeature',
- 'analysisfeatureprop',
- 'analysisprop',
- 'arraydesign',
- 'arraydesignprop',
- 'assay',
- 'assay_biomaterial',
- 'assay_project',
- 'assayprop',
- 'biomaterial',
- 'biomaterial_dbxref',
- 'biomaterial_relationship',
- 'biomaterial_treatment',
- 'biomaterialprop',
- 'cell_line',
- 'cell_line_cvterm',
- 'cell_line_cvtermprop',
- 'cell_line_dbxref',
- 'cell_line_feature',
- 'cell_line_library',
- 'cell_line_pub',
- 'cell_line_relationship',
- 'cell_line_synonym',
- 'cell_lineprop',
- 'cell_lineprop_pub',
- 'chadoprop',
- 'channel',
- 'contact',
- 'contact_relationship',
- 'control',
- 'cv',
- 'cvprop',
- 'cvterm',
- 'cvterm_dbxref',
- 'cvterm_relationship',
- 'cvtermpath',
- 'cvtermprop',
- 'cvtermsynonym',
- 'db',
- 'dbxref',
- 'dbxrefprop',
- 'eimage',
- 'element',
- 'element_relationship',
- 'elementresult',
- 'elementresult_relationship',
- 'environment',
- 'environment_cvterm',
- 'expression',
- 'expression_cvterm',
- 'expression_cvtermprop',
- 'expression_image',
- 'expression_pub',
- 'expressionprop',
- 'feature',
- 'feature_cvterm',
- 'feature_cvterm_dbxref',
- 'feature_cvterm_pub',
- 'feature_cvtermprop',
- 'feature_dbxref',
- 'feature_expression',
- 'feature_expressionprop',
- 'feature_genotype',
- 'feature_phenotype',
- 'feature_pub',
- 'feature_pubprop',
- 'feature_relationship',
- 'feature_relationship_pub',
- 'feature_relationshipprop',
- 'feature_relationshipprop_pub',
- 'feature_synonym',
- 'featureloc',
- 'featureloc_pub',
- 'featuremap',
- 'featuremap_pub',
- 'featurepos',
- 'featureprop',
- 'featureprop_pub',
- 'featurerange',
- 'genotype',
- 'genotypeprop',
- 'library',
- 'library_cvterm',
- 'library_dbxref',
- 'library_feature',
- 'library_pub',
- 'library_synonym',
- 'libraryprop',
- 'libraryprop_pub',
- 'magedocumentation',
- 'mageml',
- 'nd_experiment',
- 'nd_experiment_contact',
- 'nd_experiment_dbxref',
- 'nd_experiment_genotype',
- 'nd_experiment_phenotype',
- 'nd_experiment_project',
- 'nd_experiment_protocol',
- 'nd_experiment_pub',
- 'nd_experiment_stock',
- 'nd_experiment_stock_dbxref',
- 'nd_experiment_stockprop',
- 'nd_experimentprop',
- 'nd_geolocation',
- 'nd_geolocationprop',
- 'nd_protocol',
- 'nd_protocol_reagent',
- 'nd_protocolprop',
- 'nd_reagent',
- 'nd_reagent_relationship',
- 'nd_reagentprop',
- 'organism',
- 'organism_dbxref',
- 'organismprop',
- 'phendesc',
- 'phenotype',
- 'phenotype_comparison',
- 'phenotype_comparison_cvterm',
- 'phenotype_cvterm',
- 'phenstatement',
- 'phylonode',
- 'phylonode_dbxref',
- 'phylonode_organism',
- 'phylonode_pub',
- 'phylonode_relationship',
- 'phylonodeprop',
- 'phylotree',
- 'phylotree_pub',
- 'project',
- 'project_contact',
- 'project_pub',
- 'project_relationship',
- 'projectprop',
- 'protocol',
- 'protocolparam',
- 'pub',
- 'pub_dbxref',
- 'pub_relationship',
- 'pubauthor',
- 'pubprop',
- 'quantification',
- 'quantification_relationship',
- 'quantificationprop',
- 'stock',
- 'stock_cvterm',
- 'stock_cvtermprop',
- 'stock_dbxref',
- 'stock_dbxrefprop',
- 'stock_genotype',
- 'stock_pub',
- 'stock_relationship',
- 'stock_relationship_cvterm',
- 'stock_relationship_pub',
- 'stockcollection',
- 'stockcollection_stock',
- 'stockcollectionprop',
- 'stockprop',
- 'stockprop_pub',
- 'study',
- 'study_assay',
- 'studydesign',
- 'studydesignprop',
- 'studyfactor',
- 'studyfactorvalue',
- 'studyprop',
- 'studyprop_feature',
- 'synonym',
- 'tableinfo',
- 'treatment',
- ];
- return $tables;
- }
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