tripal/tripal_views/views/handlers/views_handler_field_dbxref_accession_link.inc

<?php

/**
 * @file
 * Used for a custom field so that field can render the database reference link
 *
 * @ingroup views_field_handlers
 * @ingroup tripal_core
 */
class views_handler_field_dbxref_accession_link extends views_handler_field {
  function construct() {
    parent::construct();

    $this->additional_fields['accession'] = 'accession';
    $this->additional_fields['db_id'] = 'db_id';

  }

  function query() {
    $this->ensure_my_table();
    $this->add_additional_fields();
  }

  function render($values) {

    $accession = $values->{$this->aliases['accession']};
    $db_id = $values->{$this->aliases['db_id']};

    if (!empty($db_id) AND !empty($accession)) {
      $previous_db = tripal_db_set_active('chado');
      // @coder-ignore: non-drupal schema therefore table prefixing does not apply
      $result = db_fetch_object(db_query('SELECT urlprefix FROM db WHERE db_id=%d', $db_id));
      tripal_db_set_active($previous_db);
      $urlprefix = $result->urlprefix;

      if (!empty($urlprefix)) {
        $accession_link = $urlprefix . $accession;
        return $accession_link;
      }
      else {
        return $accession;
      }
    }
    else {
      return $accession;
    }
  }
}