tripal/tripal_analysis/theme/tripal_analysis/tripal_analysis_base.tpl.php

<?php
$analysis = $variables['node']->analysis;
$analysis = tripal_core_expand_chado_vars($analysis,'field','analysis.description');
?>
<div id="tripal_analysis-base-box" class="tripal_analysis-info-box tripal-info-box">
  <div class="tripal_analysis-info-box-title tripal-info-box-title">Details</div><?php 
    
  // the $headers array is an array of fields to use as the colum headers. 
  // additional documentation can be found here 
  // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
  // This table for the organism has a vertical header (down the first column)
  // so we do not provide headers here, but specify them in the $rows array below.
  $headers = array();
  
  // the $rows array contains an array of rows where each row is an array
  // of values for each column of the table in that row.  Additional documentation
  // can be found here:
  // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7 
  $rows = array();

  // Analysis Name row
  $rows[] = array(
    array(
      'data' => 'Analysis Name',
      'header' => TRUE
    ),
    $analysis->name
  );

  // Software row
  $software = '';
  if($analysis->programversion and $analysis->programversion != 'n/a'){
    $software =  " (" . $analysis->programversion . ")";
  }
  if($analysis->algorithm){
    $software = ". " . $analysis->algorithm;
  }
  $rows[] = array(
    array(
      'data' => 'Software',
      'header' => TRUE
    ),
    $software
  );
 
  // Source row
  $source = '';
  if($analysis->sourceuri){
    $source = "<a href=\"$analysis->sourceuri\">$analysis->sourcename</a>";
  } 
  else {
    $source = $analysis->sourcename;
  }
  if($analysis->sourceversion){
    $source = " (" . $analysis->sourceversion . ")";
  }
  $rows[] = array(
    array(
      'data' => 'Source',
      'header' => TRUE
    ),
    $source
  );
  
  // Date performed row
  $rows[] = array(
    array(
      'data' => 'Date performed',
      'header' => TRUE
    ),
    preg_replace("/^(\d+-\d+-\d+) .*/","$1", $analysis->timeexecuted),
  ); 
  
  // the $table array contains the headers and rows array as well as other
  // options for controlling the display of the table.  Additional
  // documentation can be found here:
  // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
  $table = array(
    'header' => $headers,
    'rows' => $rows,
    'attributes' => array(
      'id' => 'tripal_analysis-table-base',
    ),
    'sticky' => FALSE,
    'caption' => '',
    'colgroups' => array(),
    'empty' => '',
  );
 
  // once we have our table array structure defined, we call Drupal's theme_table()
  // function to generate the table.
  print theme_table($table); 
  if (property_exists($analysis, 'comment')) { ?>
    <b>Description</b> <?php 
    print $analysis->description; 
  } ?>
</div>