tripal_db.views_default.inc 20 KB

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  1. <?php
  2. /**
  3. * Implements hook_views_default_views()
  4. */
  5. function tripal_db_views_default_views() {
  6. $views = array();
  7. // Default Tripal Admin View: DB
  8. $view = tripal_db_defaultview_admin_db_listing();
  9. $views[$view->name] = $view;
  10. // Default Tripal Admin View: DB References
  11. $view = tripal_db_defaultview_admin_dbxref_listing();
  12. $views[$view->name] = $view;
  13. return $views;
  14. }
  15. /**
  16. * Default Admin View for db management
  17. */
  18. function tripal_db_defaultview_admin_db_listing() {
  19. $view = new view();
  20. $view->name = 'tripal_db_admin_dbs';
  21. $view->description = 'DO NOT DISABLE';
  22. $view->tag = 'tripal admin';
  23. $view->base_table = 'db';
  24. $view->human_name = 'DB Admin';
  25. $view->core = 6;
  26. $view->api_version = '3.0';
  27. $view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */
  28. /* Display: Defaults */
  29. $handler = $view->new_display('default', 'Defaults', 'default');
  30. $handler->display->display_options['title'] = 'Databases';
  31. $handler->display->display_options['use_more_always'] = FALSE;
  32. $handler->display->display_options['access']['type'] = 'perm';
  33. $handler->display->display_options['access']['perm'] = 'access chado_db content';
  34. $handler->display->display_options['cache']['type'] = 'none';
  35. $handler->display->display_options['query']['type'] = 'views_query';
  36. $handler->display->display_options['exposed_form']['type'] = 'basic';
  37. $handler->display->display_options['pager']['type'] = 'full';
  38. $handler->display->display_options['pager']['options']['items_per_page'] = '50';
  39. $handler->display->display_options['pager']['options']['offset'] = '0';
  40. $handler->display->display_options['pager']['options']['id'] = '0';
  41. $handler->display->display_options['pager']['options']['quantity'] = '9';
  42. $handler->display->display_options['style_plugin'] = 'table';
  43. $handler->display->display_options['style_options']['grouping'] = '';
  44. $handler->display->display_options['style_options']['columns'] = array(
  45. 'name' => 'name',
  46. 'url' => 'url',
  47. 'urlprefix' => 'urlprefix',
  48. 'description' => 'description',
  49. );
  50. $handler->display->display_options['style_options']['default'] = 'name';
  51. $handler->display->display_options['style_options']['info'] = array(
  52. 'name' => array(
  53. 'sortable' => 1,
  54. 'separator' => '',
  55. ),
  56. 'url' => array(
  57. 'sortable' => 1,
  58. 'separator' => '',
  59. ),
  60. 'urlprefix' => array(
  61. 'sortable' => 0,
  62. 'separator' => '',
  63. ),
  64. 'description' => array(
  65. 'sortable' => 0,
  66. 'separator' => '',
  67. ),
  68. );
  69. /* Header: Global: Action Links */
  70. $handler->display->display_options['header']['action_links_area']['id'] = 'action_links_area';
  71. $handler->display->display_options['header']['action_links_area']['table'] = 'views';
  72. $handler->display->display_options['header']['action_links_area']['field'] = 'action_links_area';
  73. $handler->display->display_options['header']['action_links_area']['label'] = 'Action Links';
  74. $handler->display->display_options['header']['action_links_area']['empty'] = TRUE;
  75. $handler->display->display_options['header']['action_links_area']['link-1'] = array(
  76. 'label-1' => 'Add Database',
  77. 'path-1' => 'admin/tripal/chado/tripal_db/add',
  78. );
  79. /* No results behavior: Global: Text area */
  80. $handler->display->display_options['empty']['text']['id'] = 'area';
  81. $handler->display->display_options['empty']['text']['table'] = 'views';
  82. $handler->display->display_options['empty']['text']['field'] = 'area';
  83. $handler->display->display_options['empty']['text']['content'] = 'No databases match the supplied criteria.';
  84. $handler->display->display_options['empty']['text']['format'] = '2';
  85. /* Field: Chado Db: Db Id */
  86. $handler->display->display_options['fields']['db_id']['id'] = 'db_id';
  87. $handler->display->display_options['fields']['db_id']['table'] = 'db';
  88. $handler->display->display_options['fields']['db_id']['field'] = 'db_id';
  89. $handler->display->display_options['fields']['db_id']['exclude'] = TRUE;
  90. $handler->display->display_options['fields']['db_id']['separator'] = '';
  91. /* Field: Chado Db: Name */
  92. $handler->display->display_options['fields']['name']['id'] = 'name';
  93. $handler->display->display_options['fields']['name']['table'] = 'db';
  94. $handler->display->display_options['fields']['name']['field'] = 'name';
  95. /* Field: Chado Db: Urlprefix */
  96. $handler->display->display_options['fields']['urlprefix']['id'] = 'urlprefix';
  97. $handler->display->display_options['fields']['urlprefix']['table'] = 'db';
  98. $handler->display->display_options['fields']['urlprefix']['field'] = 'urlprefix';
  99. $handler->display->display_options['fields']['urlprefix']['exclude'] = TRUE;
  100. /* Field: Chado Db: Url */
  101. $handler->display->display_options['fields']['url']['id'] = 'url';
  102. $handler->display->display_options['fields']['url']['table'] = 'db';
  103. $handler->display->display_options['fields']['url']['field'] = 'url';
  104. $handler->display->display_options['fields']['url']['alter']['alter_text'] = TRUE;
  105. $handler->display->display_options['fields']['url']['alter']['text'] = '[url]<br />[urlprefix]';
  106. $handler->display->display_options['fields']['url']['alter']['make_link'] = TRUE;
  107. $handler->display->display_options['fields']['url']['alter']['path'] = '[url]';
  108. $handler->display->display_options['fields']['url']['alter']['absolute'] = TRUE;
  109. $handler->display->display_options['fields']['url']['alter']['target'] = '_blank';
  110. /* Field: Chado Db: Description */
  111. $handler->display->display_options['fields']['description']['id'] = 'description';
  112. $handler->display->display_options['fields']['description']['table'] = 'db';
  113. $handler->display->display_options['fields']['description']['field'] = 'description';
  114. /* Field: Global: Custom text */
  115. $handler->display->display_options['fields']['nothing']['id'] = 'nothing';
  116. $handler->display->display_options['fields']['nothing']['table'] = 'views';
  117. $handler->display->display_options['fields']['nothing']['field'] = 'nothing';
  118. $handler->display->display_options['fields']['nothing']['label'] = 'Edit Link';
  119. $handler->display->display_options['fields']['nothing']['exclude'] = TRUE;
  120. $handler->display->display_options['fields']['nothing']['alter']['text'] = 'edit';
  121. $handler->display->display_options['fields']['nothing']['alter']['make_link'] = TRUE;
  122. $handler->display->display_options['fields']['nothing']['alter']['path'] = 'admin/tripal/chado/tripal_db/edit/[db_id]';
  123. /* Field: Global: Custom text */
  124. $handler->display->display_options['fields']['nothing_1']['id'] = 'nothing_1';
  125. $handler->display->display_options['fields']['nothing_1']['table'] = 'views';
  126. $handler->display->display_options['fields']['nothing_1']['field'] = 'nothing';
  127. $handler->display->display_options['fields']['nothing_1']['label'] = 'View DBxrefs';
  128. $handler->display->display_options['fields']['nothing_1']['exclude'] = TRUE;
  129. $handler->display->display_options['fields']['nothing_1']['alter']['text'] = 'References';
  130. $handler->display->display_options['fields']['nothing_1']['alter']['make_link'] = TRUE;
  131. $handler->display->display_options['fields']['nothing_1']['alter']['path'] = 'admin/tripal/chado/tripal_db/dbxrefs?db_name=[name]';
  132. /* Field: Global: Custom text */
  133. $handler->display->display_options['fields']['nothing_2']['id'] = 'nothing_2';
  134. $handler->display->display_options['fields']['nothing_2']['table'] = 'views';
  135. $handler->display->display_options['fields']['nothing_2']['field'] = 'nothing';
  136. $handler->display->display_options['fields']['nothing_2']['label'] = '';
  137. $handler->display->display_options['fields']['nothing_2']['alter']['text'] = '[nothing]<br />
  138. [nothing_1]';
  139. $handler->display->display_options['fields']['nothing_2']['element_label_colon'] = FALSE;
  140. /* Filter criterion: Chado Db: Name */
  141. $handler->display->display_options['filters']['name']['id'] = 'name';
  142. $handler->display->display_options['filters']['name']['table'] = 'db';
  143. $handler->display->display_options['filters']['name']['field'] = 'name';
  144. $handler->display->display_options['filters']['name']['operator'] = 'contains';
  145. $handler->display->display_options['filters']['name']['group'] = '0';
  146. $handler->display->display_options['filters']['name']['exposed'] = TRUE;
  147. $handler->display->display_options['filters']['name']['expose']['operator_id'] = 'name_op';
  148. $handler->display->display_options['filters']['name']['expose']['label'] = 'Name Contains';
  149. $handler->display->display_options['filters']['name']['expose']['operator'] = 'name_op';
  150. $handler->display->display_options['filters']['name']['expose']['identifier'] = 'name';
  151. $handler->display->display_options['filters']['name']['expose']['values_form_type'] = 'textfield';
  152. $handler->display->display_options['filters']['name']['expose']['select_multiple'] = FALSE;
  153. $handler->display->display_options['filters']['name']['expose']['select_optional'] = FALSE;
  154. $handler->display->display_options['filters']['name']['expose']['max_length'] = 40;
  155. $handler->display->display_options['filters']['name']['expose']['remember_roles'] = array(
  156. 2 => '2',
  157. 1 => 0,
  158. 3 => 0,
  159. );
  160. /* Filter criterion: Chado Db: Description */
  161. $handler->display->display_options['filters']['description']['id'] = 'description';
  162. $handler->display->display_options['filters']['description']['table'] = 'db';
  163. $handler->display->display_options['filters']['description']['field'] = 'description';
  164. $handler->display->display_options['filters']['description']['operator'] = 'contains';
  165. $handler->display->display_options['filters']['description']['group'] = '0';
  166. $handler->display->display_options['filters']['description']['exposed'] = TRUE;
  167. $handler->display->display_options['filters']['description']['expose']['operator_id'] = 'description_op';
  168. $handler->display->display_options['filters']['description']['expose']['label'] = 'Description Contains';
  169. $handler->display->display_options['filters']['description']['expose']['operator'] = 'description_op';
  170. $handler->display->display_options['filters']['description']['expose']['identifier'] = 'description';
  171. $handler->display->display_options['filters']['description']['expose']['remember_roles'] = array(
  172. 2 => '2',
  173. 1 => 0,
  174. 3 => 0,
  175. );
  176. /* Display: Page */
  177. $handler = $view->new_display('page', 'Page', 'page_1');
  178. $handler->display->display_options['path'] = 'admin/tripal/chado/tripal_db/dbs';
  179. $handler->display->display_options['menu']['type'] = 'default tab';
  180. $handler->display->display_options['menu']['title'] = 'Databases';
  181. $handler->display->display_options['menu']['description'] = 'Lists all databases available to create database references for.';
  182. $handler->display->display_options['menu']['weight'] = '-8';
  183. $handler->display->display_options['menu']['name'] = 'management';
  184. $handler->display->display_options['menu']['context'] = 0;
  185. $handler->display->display_options['menu']['context_only_inline'] = 0;
  186. $handler->display->display_options['tab_options']['weight'] = '0';
  187. return $view;
  188. }
  189. /**
  190. * Default Admin View for dbxref management
  191. */
  192. function tripal_db_defaultview_admin_dbxref_listing() {
  193. $view = new view();
  194. $view->name = 'tripal_db_admin_dbxrefs';
  195. $view->description = 'DO NOT DISABLE';
  196. $view->tag = 'tripal admin';
  197. $view->base_table = 'dbxref';
  198. $view->human_name = 'DB Reference Admin';
  199. $view->core = 7;
  200. $view->api_version = '3.0';
  201. $view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */
  202. /* Display: Master */
  203. $handler = $view->new_display('default', 'Master', 'default');
  204. $handler->display->display_options['title'] = 'DB Reference Admin';
  205. $handler->display->display_options['use_more_always'] = FALSE;
  206. $handler->display->display_options['access']['type'] = 'perm';
  207. $handler->display->display_options['access']['perm'] = 'administer db cross-references';
  208. $handler->display->display_options['cache']['type'] = 'none';
  209. $handler->display->display_options['query']['type'] = 'views_query';
  210. $handler->display->display_options['exposed_form']['type'] = 'basic';
  211. $handler->display->display_options['pager']['type'] = 'full';
  212. $handler->display->display_options['pager']['options']['items_per_page'] = '50';
  213. $handler->display->display_options['style_plugin'] = 'table';
  214. $handler->display->display_options['style_options']['columns'] = array(
  215. 'dbxref_id' => 'dbxref_id',
  216. 'name' => 'name',
  217. 'accession' => 'accession',
  218. 'description' => 'description',
  219. 'version' => 'version',
  220. );
  221. $handler->display->display_options['style_options']['default'] = '-1';
  222. $handler->display->display_options['style_options']['info'] = array(
  223. 'dbxref_id' => array(
  224. 'sortable' => 0,
  225. 'default_sort_order' => 'asc',
  226. 'align' => '',
  227. 'separator' => '',
  228. 'empty_column' => 0,
  229. ),
  230. 'name' => array(
  231. 'sortable' => 1,
  232. 'default_sort_order' => 'asc',
  233. 'align' => '',
  234. 'separator' => '',
  235. 'empty_column' => 0,
  236. ),
  237. 'accession' => array(
  238. 'sortable' => 1,
  239. 'default_sort_order' => 'asc',
  240. 'align' => '',
  241. 'separator' => '',
  242. 'empty_column' => 0,
  243. ),
  244. 'description' => array(
  245. 'sortable' => 0,
  246. 'default_sort_order' => 'asc',
  247. 'align' => '',
  248. 'separator' => '',
  249. 'empty_column' => 0,
  250. ),
  251. 'version' => array(
  252. 'sortable' => 1,
  253. 'default_sort_order' => 'asc',
  254. 'align' => '',
  255. 'separator' => '',
  256. 'empty_column' => 0,
  257. ),
  258. );
  259. /* Field: Chado Dbxref: Dbxref Id */
  260. $handler->display->display_options['fields']['dbxref_id']['id'] = 'dbxref_id';
  261. $handler->display->display_options['fields']['dbxref_id']['table'] = 'dbxref';
  262. $handler->display->display_options['fields']['dbxref_id']['field'] = 'dbxref_id';
  263. $handler->display->display_options['fields']['dbxref_id']['exclude'] = TRUE;
  264. $handler->display->display_options['fields']['dbxref_id']['separator'] = '';
  265. /* Field: Chado Db: Name */
  266. $handler->display->display_options['fields']['name']['id'] = 'name';
  267. $handler->display->display_options['fields']['name']['table'] = 'db';
  268. $handler->display->display_options['fields']['name']['field'] = 'name';
  269. $handler->display->display_options['fields']['name']['label'] = 'Database';
  270. /* Field: Chado Dbxref: Accession */
  271. $handler->display->display_options['fields']['accession']['id'] = 'accession';
  272. $handler->display->display_options['fields']['accession']['table'] = 'dbxref';
  273. $handler->display->display_options['fields']['accession']['field'] = 'accession';
  274. /* Field: Chado Dbxref: Description */
  275. $handler->display->display_options['fields']['description']['id'] = 'description';
  276. $handler->display->display_options['fields']['description']['table'] = 'dbxref';
  277. $handler->display->display_options['fields']['description']['field'] = 'description';
  278. /* Field: Chado Dbxref: Version */
  279. $handler->display->display_options['fields']['version']['id'] = 'version';
  280. $handler->display->display_options['fields']['version']['table'] = 'dbxref';
  281. $handler->display->display_options['fields']['version']['field'] = 'version';
  282. /* Sort criterion: Chado Db: Name */
  283. $handler->display->display_options['sorts']['name']['id'] = 'name';
  284. $handler->display->display_options['sorts']['name']['table'] = 'db';
  285. $handler->display->display_options['sorts']['name']['field'] = 'name';
  286. /* Sort criterion: Chado Dbxref: Accession */
  287. $handler->display->display_options['sorts']['accession']['id'] = 'accession';
  288. $handler->display->display_options['sorts']['accession']['table'] = 'dbxref';
  289. $handler->display->display_options['sorts']['accession']['field'] = 'accession';
  290. /* Sort criterion: Chado Dbxref: Version */
  291. $handler->display->display_options['sorts']['version']['id'] = 'version';
  292. $handler->display->display_options['sorts']['version']['table'] = 'dbxref';
  293. $handler->display->display_options['sorts']['version']['field'] = 'version';
  294. $handler->display->display_options['sorts']['version']['order'] = 'DESC';
  295. /* Filter criterion: Chado Db: Name */
  296. $handler->display->display_options['filters']['name']['id'] = 'name';
  297. $handler->display->display_options['filters']['name']['table'] = 'db';
  298. $handler->display->display_options['filters']['name']['field'] = 'name';
  299. $handler->display->display_options['filters']['name']['value'] = array(
  300. 'All' => 'All',
  301. );
  302. $handler->display->display_options['filters']['name']['group'] = 1;
  303. $handler->display->display_options['filters']['name']['exposed'] = TRUE;
  304. $handler->display->display_options['filters']['name']['expose']['operator_id'] = '';
  305. $handler->display->display_options['filters']['name']['expose']['label'] = 'Database';
  306. $handler->display->display_options['filters']['name']['expose']['identifier'] = 'db_name';
  307. $handler->display->display_options['filters']['name']['expose']['values_form_type'] = 'select';
  308. $handler->display->display_options['filters']['name']['expose']['select_multiple'] = TRUE;
  309. $handler->display->display_options['filters']['name']['expose']['select_optional'] = TRUE;
  310. $handler->display->display_options['filters']['name']['expose']['max_length'] = 40;
  311. $handler->display->display_options['filters']['name']['expose']['remember_roles'] = array(
  312. 2 => '2',
  313. 1 => 0,
  314. 3 => 0,
  315. );
  316. /* Filter criterion: Chado Dbxref: Accession */
  317. $handler->display->display_options['filters']['accession']['id'] = 'accession';
  318. $handler->display->display_options['filters']['accession']['table'] = 'dbxref';
  319. $handler->display->display_options['filters']['accession']['field'] = 'accession';
  320. $handler->display->display_options['filters']['accession']['operator'] = 'contains';
  321. $handler->display->display_options['filters']['accession']['group'] = 1;
  322. $handler->display->display_options['filters']['accession']['exposed'] = TRUE;
  323. $handler->display->display_options['filters']['accession']['expose']['operator_id'] = 'accession_op';
  324. $handler->display->display_options['filters']['accession']['expose']['label'] = 'Accession Contains';
  325. $handler->display->display_options['filters']['accession']['expose']['operator'] = 'accession_op';
  326. $handler->display->display_options['filters']['accession']['expose']['identifier'] = 'accession';
  327. $handler->display->display_options['filters']['accession']['expose']['remember_roles'] = array(
  328. 2 => '2',
  329. 1 => 0,
  330. 3 => 0,
  331. );
  332. /* Filter criterion: Chado Dbxref: Description */
  333. $handler->display->display_options['filters']['description']['id'] = 'description';
  334. $handler->display->display_options['filters']['description']['table'] = 'dbxref';
  335. $handler->display->display_options['filters']['description']['field'] = 'description';
  336. $handler->display->display_options['filters']['description']['operator'] = 'contains';
  337. $handler->display->display_options['filters']['description']['group'] = 1;
  338. $handler->display->display_options['filters']['description']['exposed'] = TRUE;
  339. $handler->display->display_options['filters']['description']['expose']['operator_id'] = 'description_op';
  340. $handler->display->display_options['filters']['description']['expose']['label'] = 'Description Contains';
  341. $handler->display->display_options['filters']['description']['expose']['operator'] = 'description_op';
  342. $handler->display->display_options['filters']['description']['expose']['identifier'] = 'description';
  343. $handler->display->display_options['filters']['description']['expose']['remember_roles'] = array(
  344. 2 => '2',
  345. 1 => 0,
  346. 3 => 0,
  347. );
  348. /* Display: Page */
  349. $handler = $view->new_display('page', 'Page', 'page');
  350. $handler->display->display_options['path'] = 'admin/tripal/chado/tripal_db/dbxrefs';
  351. $handler->display->display_options['menu']['type'] = 'tab';
  352. $handler->display->display_options['menu']['title'] = 'References';
  353. $handler->display->display_options['menu']['weight'] = '0';
  354. $handler->display->display_options['menu']['name'] = 'management';
  355. $handler->display->display_options['menu']['context'] = 0;
  356. $handler->display->display_options['menu']['context_only_inline'] = 0;
  357. return $view;
  358. }