tripal/base/tripal_views_setup/tripal_views_setup.module

<?php

require_once 'includes/tripal_views_setup.admin.inc';

function tripal_views_setup_menu(){
	$items = array();
	
	$items['admin/tripal/tripal_views_setup'] = array(
	  'title' => t('Tripal Views Setups'),
	  'description' => t('Tripal Views Setups settings page, allows you to select and create materialized views and chado tables to use for searches.'),
	  'page callback' => 'drupal_get_form',
	  'page arguments' => array('tripal_views_setup_admin_form'),
	  // 'page callback' => 'tripal_views_setup_admin_form_page',
	  'access arguments' => array('access administration pages'),
	  'type' => MENU_NORMAL_ITEM,
	);
	
	//page to actually create search->mview->chado table relationships
 	$items['admin/tripal/tripal_views_setup_new'] = array(
		 'title' => 'Create New Views Setup',
     'page callback' => 'drupal_get_form',
     'page arguments' => array('tripal_views_setup_new_search_form'),
     'access arguments' => array('access administration pages'), //TODO: figure out the proper permissions arguments
     'type' => MENU_NORMAL_ITEM,
 	);

   $items['admin/tripal/tripal_views_setup/ajax/mview_cols'] = array(
     'title' => 'Get MView Columns',
     'page callback' => 'tripal_view_search_ajax_mview_cols',
     'access arguments' => array('access administration pages'),
     'type' => MENU_CALLBACK,
   );
	
	// $items['admin/tripal/tripal_views_setup_new/ajax/mview_column'] = array(
		// 'title' => 'Get Mview Columns',
		// 'page callback' => 'tripal_views_setup_ajax_db_mview_columns',
		// 'access arguments' => array('access administration pages'),
		// 'type' => MENU_CALLBACK,
	// );
	
	// $items['admin/tripal/tripal_views_setup_new/ajax/base_table_name'] = array(
		// 'title' => 'Get Chado Tables',
		// 'page callback' => 'tripal_views_setup_ajax_db_chado_tables',
		// 'access arguments' => array('access administration pages'),
		// 'type' => MENU_CALLBACK,
	// );
	
	return $items;
}

function tripal_views_setup_theme(){
	$theme = array();
	
	$theme['tripal_views_setup_fields_form'] = array(
		'arguments' => array('form' => NULL),
      'template'  => 'tripal_views_setup_fields_form',
 	);
	
	return $theme;
}