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3rd_party.rst

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  1. Third-party Integration
    2. 

  2. =======================
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  3. 

  4. The following modules provide integration with external third-party tools. For example, they may allow you to easily embed the tool in Drupal/Tripal pages and/or expose data from the tool on your Tripal site.
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  5. 

  6. Tripal Blast
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  7. ------------
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  8. 

  9. This module provides a basic interface to allow your users to utilize your server's NCBI BLAST+. There is a simple interface allowing users to paste or upload a query sequence and then select from available databases and a tabular results listing with alignment information and multiple download formats (HTML, TSV, GFF3, XML) available.
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  10. 

  11. `Documentation <https://github.com/tripal/tripal_blast/blob/7.x-1.x/README.md>`__
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  12. `Repository <https://github.com/tripal/tripal_blast>`__
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  13. 

  14. Tripal Galaxy
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  15. -------------
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  16. 

  17. This module is for integration of Tripal and the Galaxy Project. It facilitates the creation of forms on your Tripal site that submit jobs to a galaxy instance.
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  19. `Documentation <https://tripal-galaxy.readthedocs.io/en/latest/?badge=latest>`__
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  20. `Repository <https://github.com/tripal/tripal_galaxy>`__
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  21. 

  22. Tripal JBrowse
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  23. --------------
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  24. 

  25. This module provides integration between Tripal sites and pre-existing GMOD JBrowse instances. It allows you to create pages on your Tripal site with an embedded JBrowse instance by filling out a simple form.
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  27. `Documentation <https://github.com/tripal/tripal_jbrowse/blob/7.x-2.1.x/README.md>`__
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  28. `Repository <https://github.com/tripal/tripal_jbrowse>`__
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  29. 

  30. VCF Filter
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  31. -----------
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  32. 

  33. This modules provides a form interface so users can custom filter existing VCF files and export in a variety of formats. The form simply provides an interface to VCFtools and uses the Tripal Download API to provide the filtered file to the user.
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  34. 

  35. `Documentation <https://github.com/UofS-Pulse-Binfo/vcf_filter/blob/master/README.md>`__
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  36. `Repository <https://github.com/UofS-Pulse-Binfo/vcf_filter>`__
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  37. 

  38. BrAPI
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  39. -----
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  40. 

  41. This module provides a Breeding API end point on your Tripal site as well as a user query interface and an auto-query system to integrate external BrAPI end point data into your site dynamically. An administrative interface allows you to adjust the module settings according to the way you use Chado. A couple of hooks are also provided for module developers in order to allow customization/extension of calls.
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  42. 

  43. `Documentation <https://brapi.readthedocs.io/en/latest/>`__
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  44. `Repository <https://github.com/tripal/brapi>`__
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