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							- <?php
 
- /**
 
-  * @file
 
-  * Describe default genetic views
 
-  */
 
- /**
 
-  * Implements hook_views_default_views().
 
-  *
 
-  * @ingroup tripal_genetic
 
-  */
 
- function tripal_genetic_views_default_views() {
 
-   $views = array();
 
-   // User View ("Search Biological Content")
 
-   // Remember, if you change the name/path of this view,
 
-   // you also want to change it's description in tripal_genetic_search_biological_data_views()
 
-   $view = tripal_genetic_defaultvalue_user_genotypes();
 
-   $view = tripal_make_view_compatible_with_external($view);
 
-   $views[$view->name] = $view;
 
-   // Admin view
 
-   $view = tripal_genetic_defaultviews_admin_genotypes();
 
-   $view = tripal_make_view_compatible_with_external($view);
 
-   $views[$view->name] = $view;
 
-   return $views;
 
- }
 
- /**
 
-  * Defines the genetic user search default view.
 
-  *
 
-  * @ingroup tripal_genetic
 
-  */
 
- function tripal_genetic_defaultvalue_user_genotypes() {
 
-   // As a shortcut, currently I am copying the admin view and then tweaking it
 
-   // In thie future this should be replaced by a views export
 
-   $view = tripal_genetic_defaultviews_admin_genotypes();
 
-   // change some view admin stuff
 
-   $view->name = 'tripal_genetic_user_genotypes';
 
-   $view->human_name = 'Genotype User Search';
 
-   $view->description = 'Allows users to search genotype data';
 
-   $view->tag = 'tripal search';
 
-   // Change the path
 
-   $view->display['page_1']->display_options['path'] = 'chado/genotype';
 
-   $view->display['page_1']->display_options['menu'] = array(
 
-     'type' => 'normal',
 
-     'title' => 'Genotypes',
 
-     'description' => 'Genetic variations such as SNPs, MNPs and indels.',
 
-     'weight' => '-10'
 
-   );
 
-   unset($view->display['page_1']->display_options['tab_options']);
 
-   // Remove edit/delete node
 
-   unset(
 
-     $view->display['default']->display_options['fields']['delete_node'],
 
-     $view->display['default']->display_options['fields']['edit_node'],
 
-     $view->display['default']->display_options['fields']['nothing']
 
-   );
 
-   // Remove the admin action links
 
-   unset($view->display['default']->display_options['header']['action_links_area']);
 
-   return $view;
 
- }
 
- /**
 
-  * Describes the default administration genetic view
 
-  *
 
-  * @ingroup tripal_genetic
 
-  */
 
- function tripal_genetic_defaultviews_admin_genotypes() {
 
-   $view = new view();
 
-   $view->name = 'tripal_genetic_admin_genetics';
 
-   $view->description = 'DO NOT DISABLE';
 
-   $view->tag = 'tripal admin';
 
-   $view->base_table = 'genotype';
 
-   $view->human_name = 'Genotype Admin';
 
-   $view->core = 7;
 
-   $view->api_version = '3.0';
 
-   $view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */
 
-   /* Display: Defaults */
 
-   $handler = $view->new_display('default', 'Defaults', 'default');
 
-   $handler->display->display_options['title'] = 'Genotypes Observed';
 
-   $handler->display->display_options['use_more_always'] = FALSE;
 
-   $handler->display->display_options['access']['type'] = 'perm';
 
-   $handler->display->display_options['cache']['type'] = 'none';
 
-   $handler->display->display_options['query']['type'] = 'views_query';
 
-   $handler->display->display_options['exposed_form']['type'] = 'input_required';
 
-   $handler->display->display_options['exposed_form']['options']['submit_button'] = 'Search';
 
-   $handler->display->display_options['exposed_form']['options']['text_input_required'] = 'Click search to see a listing of genotypes that meet the filter requirements. Use the filters to restrict this set to a more reasonable number of genotypes or to find a specific genotype.';
 
-   $handler->display->display_options['exposed_form']['options']['text_input_required_format'] = 'full_html';
 
-   $handler->display->display_options['pager']['type'] = 'full';
 
-   $handler->display->display_options['pager']['options']['items_per_page'] = '25';
 
-   $handler->display->display_options['pager']['options']['offset'] = '0';
 
-   $handler->display->display_options['pager']['options']['id'] = '0';
 
-   $handler->display->display_options['pager']['options']['quantity'] = '9';
 
-   $handler->display->display_options['style_plugin'] = 'table';
 
-   $handler->display->display_options['style_options']['grouping'] = '';
 
-   $handler->display->display_options['style_options']['columns'] = array(
 
-     'uniquename' => 'uniquename',
 
-     'name' => 'name',
 
-     'description' => 'description',
 
-   );
 
-   $handler->display->display_options['style_options']['default'] = 'uniquename';
 
-   $handler->display->display_options['style_options']['info'] = array(
 
-     'uniquename' => array(
 
-       'sortable' => 1,
 
-       'separator' => '',
 
-     ),
 
-     'name' => array(
 
-       'sortable' => 1,
 
-       'separator' => '',
 
-     ),
 
-     'description' => array(
 
-       'sortable' => 1,
 
-       'separator' => '',
 
-     ),
 
-   );
 
-   /* No results behavior: Global: Text area */
 
-   $handler->display->display_options['empty']['text']['id'] = 'area';
 
-   $handler->display->display_options['empty']['text']['table'] = 'views';
 
-   $handler->display->display_options['empty']['text']['field'] = 'area';
 
-   $handler->display->display_options['empty']['text']['content'] = 'No genotypes match the current criteria.';
 
-   $handler->display->display_options['empty']['text']['format'] = '2';
 
-   /* Field: Chado Genotype: Uniquename */
 
-   $handler->display->display_options['fields']['uniquename']['id'] = 'uniquename';
 
-   $handler->display->display_options['fields']['uniquename']['table'] = 'genotype';
 
-   $handler->display->display_options['fields']['uniquename']['field'] = 'uniquename';
 
-   /* Field: Chado Genotype: Name */
 
-   $handler->display->display_options['fields']['name']['id'] = 'name';
 
-   $handler->display->display_options['fields']['name']['table'] = 'genotype';
 
-   $handler->display->display_options['fields']['name']['field'] = 'name';
 
-   /* Field: Chado Genotype: Description */
 
-   $handler->display->display_options['fields']['description']['id'] = 'description';
 
-   $handler->display->display_options['fields']['description']['table'] = 'genotype';
 
-   $handler->display->display_options['fields']['description']['field'] = 'description';
 
-   /* Sort criterion: Chado Genotype: Id */
 
-   $handler->display->display_options['sorts']['genotype_id']['id'] = 'genotype_id';
 
-   $handler->display->display_options['sorts']['genotype_id']['table'] = 'genotype';
 
-   $handler->display->display_options['sorts']['genotype_id']['field'] = 'genotype_id';
 
-   $handler->display->display_options['sorts']['genotype_id']['order'] = 'DESC';
 
-   /* Filter criterion: Chado Genotype: Uniquename */
 
-   $handler->display->display_options['filters']['uniquename']['id'] = 'uniquename';
 
-   $handler->display->display_options['filters']['uniquename']['table'] = 'genotype';
 
-   $handler->display->display_options['filters']['uniquename']['field'] = 'uniquename';
 
-   $handler->display->display_options['filters']['uniquename']['operator'] = 'contains';
 
-   $handler->display->display_options['filters']['uniquename']['group'] = '0';
 
-   $handler->display->display_options['filters']['uniquename']['exposed'] = TRUE;
 
-   $handler->display->display_options['filters']['uniquename']['expose']['operator_id'] = 'uniquename_op';
 
-   $handler->display->display_options['filters']['uniquename']['expose']['label'] = 'Unique Name Contains';
 
-   $handler->display->display_options['filters']['uniquename']['expose']['operator'] = 'uniquename_op';
 
-   $handler->display->display_options['filters']['uniquename']['expose']['identifier'] = 'uniquename';
 
-   $handler->display->display_options['filters']['uniquename']['expose']['remember_roles'] = array(
 
-     2 => '2',
 
-     1 => 0,
 
-     3 => 0,
 
-   );
 
-   /* Filter criterion: Chado Genotype: Description */
 
-   $handler->display->display_options['filters']['description']['id'] = 'description';
 
-   $handler->display->display_options['filters']['description']['table'] = 'genotype';
 
-   $handler->display->display_options['filters']['description']['field'] = 'description';
 
-   $handler->display->display_options['filters']['description']['operator'] = 'contains';
 
-   $handler->display->display_options['filters']['description']['group'] = '0';
 
-   $handler->display->display_options['filters']['description']['exposed'] = TRUE;
 
-   $handler->display->display_options['filters']['description']['expose']['operator_id'] = 'description_op';
 
-   $handler->display->display_options['filters']['description']['expose']['label'] = 'Description Contains';
 
-   $handler->display->display_options['filters']['description']['expose']['operator'] = 'description_op';
 
-   $handler->display->display_options['filters']['description']['expose']['identifier'] = 'description';
 
-   $handler->display->display_options['filters']['description']['expose']['remember_roles'] = array(
 
-     2 => '2',
 
-     1 => 0,
 
-     3 => 0,
 
-   );
 
-   /* Display: Page */
 
-   $handler = $view->new_display('page', 'Page', 'page_1');
 
-   $handler->display->display_options['path'] = 'admin/tripal/legacy/tripal_genetic/genotypes';
 
-   $handler->display->display_options['menu']['type'] = 'default tab';
 
-   $handler->display->display_options['menu']['title'] = 'Genotypes';
 
-   $handler->display->display_options['menu']['description'] = 'A genotype is defined by a collection of features, mutations, etc.';
 
-   $handler->display->display_options['menu']['weight'] = '-10';
 
-   $handler->display->display_options['menu']['context'] = 0;
 
-   $handler->display->display_options['menu']['context_only_inline'] = 0;
 
-   $handler->display->display_options['tab_options']['weight'] = '0';
 
-   return $view;
 
- }
 
 
  |