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							- <?php
 
- module_load_include('inc', 'views', 'includes/base');
 
- module_load_include('inc', 'views', 'includes/handlers');
 
- /**
 
-  * @file
 
-  * Handler to allow joins between records via a linking table
 
-  *
 
-  * Example Usage:
 
-  *   To join the analysis table to the feature table through the analysisfeature table,
 
-  *   (ie: get analysis fields to show up in a feature view)
 
-  *   Use the following code in the analysis hook_views_data:
 
-  *   @code
 
-         $data['analysis']['table']['join']['feature'] = array(
 
-           'linking' => array(
 
-             'table' => 'analysisfeature',
 
-             'left_field' => 'feature_id',
 
-             'field' => 'analysis_id',
 
-           ),
 
-           'left_field' => 'feature_id',
 
-           'field' => 'analysis_id',
 
-           'handler' => 'views_handler_join_chado_through_linking'
 
-         );
 
-  *   @endcode
 
-  *
 
-  * NOTE: If the right table is in the drupal schema rather then the chado schema
 
-  *  (ie: node, chado_feature) then add the following to the above join description:
 
-  *  @code
 
-     'table_is_drupal' => TRUE
 
-  *  @endcode
 
-  *  This will ensure the drupal table is surrounded by { } and as such any database
 
-  *  prefixes are added correctly. If the left table is in the drupal schema it should already
 
-  *  be defined by a previous join (or the From clause).
 
-  */
 
- class views_handler_join_chado_through_linking extends views_join {
 
-   // PHP 4 doesn't call constructors of the base class automatically from a
 
-   // constructor of a derived class. It is your responsibility to propagate
 
-   // the call to constructors upstream where appropriate.
 
-   function construct($table = NULL, $left_table = NULL, $left_field = NULL, $field = NULL, $extra = array(), $type = 'LEFT', $added = NULL) {
 
-     parent::construct($table, $left_table, $left_field, $field, $extra, $type);
 
-   }
 
-   /**
 
-    * Creates SQL for both joins table => linking_table and linking_table => left_table
 
-    * NOTE: Uses fields in definition as passed in from hook_views_data join definition
 
-    */
 
-   function join($table, &$query) {
 
-     $output = '';
 
-     $joins = array();
 
-     $joins[] = $this->create_single_join(
 
-       $query,
 
-       array(
 
-         'table' => $this->definition['linking']['table'],
 
-         'field' => $this->definition['linking']['left_field'],
 
-         'is_drupal' => FALSE,
 
-       ),
 
-       array(
 
-         'table' => $this->definition['left_table'],
 
-         'field' => $this->definition['left_field'],
 
-       ),
 
-       'LEFT'
 
-     );
 
-     $joins[] = $this->create_single_join(
 
-       $query,
 
-       array(
 
-         'table' => $this->definition['table'],
 
-         'field' => $this->definition['field'],
 
-         'is_drupal' => $this->definition['table_is_drupal'],
 
-       ),
 
-       array(
 
-         'table' => $this->definition['linking']['table'],
 
-         'field' => $this->definition['linking']['field'],
 
-       ),
 
-       'LEFT'
 
-     );
 
-     $output .= implode("\n", $joins);
 
-     return $output;
 
-   }
 
-   /**
 
-    * Creates SQL for a single join based on parameters
 
-    */
 
-   function create_single_join(&$query, $right_spec, $left_spec, $join_type) {
 
-     if ($right_spec['table']) {
 
-       $right = $query->get_table_info($right_spec['table']);
 
-       if (!$right['alias']) {
 
-         $right['alias'] = $right_spec['table'];
 
-       }
 
-       $right_field = "$right[alias].$right_spec[field]";
 
-       if ($right_spec['is_drupal']) {
 
-         $right_table = '{' . $right_spec['table'] . '}';
 
-       }
 
-       else {
 
-         $right_table = $right_spec['table'];
 
-       }
 
-     }
 
-     if ($left_spec['table']) {
 
-       $left = $query->get_table_info($left_spec['table']);
 
-       if (!$left['alias']) {
 
-         $left['alias'] = $left_spec['table'];
 
-         }
 
-       $left_field = "$left[alias].$left_spec[field]";
 
-     }
 
-     else {
 
-       // This can be used if left_field is a formula or something. It should be used only *very* rarely.
 
-       $left_field = $this->left_spec['field'];
 
-     }
 
-     $output = " $join_type JOIN $right_table $right[alias] ON $left_field = $right_field";
 
-     return $output;
 
-   }
 
- }
 
 
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