1234567891011121314151617181920212223242526272829303132333435363738394041 |
- <h3>Tripal Feature Map Quick Links:</h3>
- <ul>
- <li><a href="<?php print url('admin/tripal/tripal_featuremap/configuration') ?>">Map Configuration</a></li>
- </ul>
- <h3>Module Description:</h3>
- <p>The Tripal Map module is an interface for the Chado Map module which groups features (sequences) into
- maps (typically genetic maps).
- This module provides support for visualization of "map" pages, editing and updating.
- </p>
- <h3>Setup Instructions:</h3>
- <ol>
- <li><p><b>Set Permissions</b>: By default only the site administrator account has access to create, edit, delete
- or administer maps. Navigate to the <?php print l('permissions page', 'admin/user/permissions')?> and set the
- permissions under the 'tripal_featuremap' section as appropriate for your site. For a simple setup, allow anonymous
- users access to view content and create a special role for creating, editing and other administrative tasks.</p></li>
-
- <li><p><b>Create a Map</b>: An map (called a feature map in Chado) can be <?php print l('created', 'node/add/chado-featuremap')?>
- manually in the same way any other data type. There is no loader for loading large files of map information including
- features that may be associated with these maps (e.g. genetic markers). The Tripal bulk loader is the only way
- to load this type of data.</p></li>
-
- <li><p><b>Sync any Existing Maps</b>: Before Maps can be viewed on the website, they must first be <?php print l('created manually', 'node/add/chado-featuremap') ?>
- or if they already exist in the Chado database they must be synced. Near the top of the <?php print l('Map Configuration page', 'admin/tripal/tripal_featuremap/configuration') ?>
- there is
- a Sync Maps section which provides list of maps currently in chado which can be sync\'d.
- Simply select the maps you would like to create Drupal/Tripal pages for and click Sync Maps. Once synced,
- pages will appear on the site for maps.</p></li>
-
- </ol>
- <h3>Features of this Module:</h3>
- <ul>
- <li><p><b>Edit or Delete Maps</b>: Maps can be manually edited or deleted by navigating to the map page and clicking the "Edit" button.</p></li>
- <li><p><b>Simple Search Tool</b>: A <?php print l('simple search tool','chado/featuremaps') ?> is provided for
- finding maps. This tool relies on Drupal Views. <a href="http://drupal.org/project/views">Drupal Views</a>
- which must be installed to see the search tool. Look for it in the navigation menu under the item
- "Search Biological Data". </p></li>
- </ul>
|