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- <?php
- /**
- * @file
- *
- * This file contains hooks for specifying the natural diversity tables
- * when Chado v1.11 is installed. This is only useful for some specific
- * sites that required the ND tables before they were released. These
- * files should not be needed for most sites as the ND tables are now part
- * of Chado v1.2. However these hooks remain here for backwards compatibility.
- */
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_experiment table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_experiment() {
- $description = array();
- $description = array(
- 'table' => 'nd_experiment',
- 'fields' => array(
- 'nd_experiment_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'type_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'nd_geolocation_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_experiment_id',
- ),
- 'foreign keys' => array(
- 'nd_geolocation' => array(
- 'table' => 'nd_geolocation',
- 'columns' => array(
- 'nd_geolocation_id' => 'nd_geolocation_id',
- ),
- ),
- 'cvterm' => array(
- 'table' => 'cvterm',
- 'columns' => array(
- 'type_id' => 'cvterm_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- 'nd_experiment_contact',
- 'nd_experiment_dbxref',
- 'nd_experiment_genotype',
- 'nd_experiment_phenotype',
- 'nd_experiment_project',
- 'nd_experiment_protocol',
- 'nd_experiment_pub',
- 'nd_experiment_stock',
- 'nd_experimentprop'
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_experiment_contact table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_experiment_contact() {
- $description = array();
- $description = array(
- 'table' => 'nd_experiment_contact',
- 'fields' => array(
- 'nd_experiment_contact_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'contact_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'nd_experiment_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_experiment_contact_id',
- ),
- 'foreign keys' => array(
- 'nd_experiment' => array(
- 'table' => 'nd_experiment',
- 'columns' => array(
- 'nd_experiment_id' => 'nd_experiment_id',
- ),
- ),
- 'contact' => array(
- 'table' => 'contact',
- 'columns' => array(
- 'contact_id' => 'contact_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_experiment_dbxref table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_experiment_dbxref() {
- $description = array();
- $description = array(
- 'table' => 'nd_experiment_dbxref',
- 'fields' => array(
- 'nd_experiment_dbxref_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'dbxref_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'nd_experiment_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_experiment_dbxref_id',
- ),
- 'foreign keys' => array(
- 'nd_experiment' => array(
- 'table' => 'nd_experiment',
- 'columns' => array(
- 'nd_experiment_id' => 'nd_experiment_id',
- ),
- ),
- 'dbxref' => array(
- 'table' => 'dbxref',
- 'columns' => array(
- 'dbxref_id' => 'dbxref_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_experiment_genotype table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_experiment_genotype() {
- $description = array();
- $description = array(
- 'table' => 'nd_experiment_genotype',
- 'fields' => array(
- 'nd_experiment_genotype_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'genotype_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'nd_experiment_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_experiment_genotype_id',
- ),
- 'foreign keys' => array(
- 'nd_experiment' => array(
- 'table' => 'nd_experiment',
- 'columns' => array(
- 'nd_experiment_id' => 'nd_experiment_id',
- ),
- ),
- 'genotype' => array(
- 'table' => 'genotype',
- 'columns' => array(
- 'genotype_id' => 'genotype_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_experiment_phenotype table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_experiment_phenotype() {
- $description = array();
- $description = array(
- 'table' => 'nd_experiment_phenotype',
- 'fields' => array(
- 'nd_experiment_phenotype_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'phenotype_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'nd_experiment_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_experiment_phenotype_id',
- ),
- 'foreign keys' => array(
- 'nd_experiment' => array(
- 'table' => 'nd_experiment',
- 'columns' => array(
- 'nd_experiment_id' => 'nd_experiment_id',
- ),
- ),
- 'phenotype' => array(
- 'table' => 'phenotype',
- 'columns' => array(
- 'phenotype_id' => 'phenotype_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_experiment_project table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_experiment_project() {
- $description = array();
- $description = array(
- 'table' => 'nd_experiment_project',
- 'fields' => array(
- 'nd_experiment_project_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'project_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'nd_experiment_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_experiment_project_id',
- ),
- 'foreign keys' => array(
- 'nd_experiment' => array(
- 'table' => 'nd_experiment',
- 'columns' => array(
- 'nd_experiment_id' => 'nd_experiment_id',
- ),
- ),
- 'project' => array(
- 'table' => 'project',
- 'columns' => array(
- 'project_id' => 'project_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_experiment_protocol table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_experiment_protocol() {
- $description = array();
- $description = array(
- 'table' => 'nd_experiment_protocol',
- 'fields' => array(
- 'nd_experiment_protocol_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'protocol_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'nd_experiment_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_experiment_protocol_id',
- ),
- 'foreign keys' => array(
- 'nd_experiment' => array(
- 'table' => 'nd_experiment',
- 'columns' => array(
- 'nd_experiment_id' => 'nd_experiment_id',
- ),
- ),
- 'protocol' => array(
- 'table' => 'protocol',
- 'columns' => array(
- 'protocol_id' => 'protocol_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_experiment_pub table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_experiment_pub() {
- $description = array();
- $description = array(
- 'table' => 'nd_experiment_pub',
- 'fields' => array(
- 'nd_experiment_pub_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'pub_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'nd_experiment_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_experiment_pub_id',
- ),
- 'foreign keys' => array(
- 'nd_experiment' => array(
- 'table' => 'nd_experiment',
- 'columns' => array(
- 'nd_experiment_id' => 'nd_experiment_id',
- ),
- ),
- 'pub' => array(
- 'table' => 'pub',
- 'columns' => array(
- 'pub_id' => 'pub_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_experiment_stock table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_experiment_stock() {
- $description = array();
- $description = array(
- 'table' => 'nd_experiment_stock',
- 'fields' => array(
- 'nd_experiment_stock_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'stock_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'nd_experiment_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'type_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_experiment_stock_id',
- ),
- 'foreign keys' => array(
- 'nd_experiment' => array(
- 'table' => 'nd_experiment',
- 'columns' => array(
- 'nd_experiment_id' => 'nd_experiment_id',
- ),
- ),
- 'stock' => array(
- 'table' => 'stock',
- 'columns' => array(
- 'stock_id' => 'stock_id',
- ),
- ),
- 'cvterm' => array(
- 'table' => 'cvterm',
- 'columns' => array(
- 'type_id' => 'cvterm_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- 'nd_experiment_stock_dbxref',
- 'nd_experiment_stockprop',
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_experiment_stockprop table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_experiment_stockprop() {
- $description = array();
- $description = array(
- 'table' => 'nd_experiment_stockprop',
- 'fields' => array(
- 'nd_experiment_stockprop_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'nd_experiment_stock_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'type_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'value' => array(
- 'type' => 'varchar',
- ),
- 'rank' => array(
- 'type' => 'int',
- 'not null' => 1,
- 'default' => 1
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_experiment_stockprop_id',
- ),
- 'foreign keys' => array(
- 'nd_experiment_stock' => array(
- 'table' => 'nd_experiment_stock',
- 'columns' => array(
- 'nd_experiment_stock_id' => 'nd_experiment_stock_id',
- ),
- ),
- 'cvterm' => array(
- 'table' => 'cvterm',
- 'columns' => array(
- 'type_id' => 'cvterm_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_experiment_stock_dbxref table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_experiment_stock_dbxref() {
- $description = array();
- $description = array(
- 'table' => 'nd_experiment_stock_dbxref',
- 'fields' => array(
- 'nd_experiment_stock_dbxref_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'nd_experiment_stock_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'dbxref_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_experiment_stock_dbxref_id',
- ),
- 'foreign keys' => array(
- 'nd_experiment_stock' => array(
- 'table' => 'nd_experiment_stock',
- 'columns' => array(
- 'nd_experiment_stock_id' => 'nd_experiment_stock_id',
- ),
- ),
- 'dbxref' => array(
- 'table' => 'dbxref',
- 'columns' => array(
- 'dbxref_id' => 'dbxref_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_experimentprop table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_experimentprop() {
- $description = array();
- $description = array(
- 'table' => 'nd_experimentprop',
- 'fields' => array(
- 'nd_experimentprop_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'nd_experiment_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'type_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'value' => array(
- 'type' => 'varchar',
- ),
- 'rank' => array(
- 'type' => 'int',
- 'not null' => 1,
- 'default' => 1
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_experimentprop_id',
- ),
- 'foreign keys' => array(
- 'nd_experiment' => array(
- 'table' => 'nd_experiment',
- 'columns' => array(
- 'nd_experiment_id' => 'nd_experiment_id',
- ),
- ),
- 'cvterm' => array(
- 'table' => 'cvterm',
- 'columns' => array(
- 'type_id' => 'cvterm_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_geolocation table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_geolocation() {
- $description = array();
- $description = array(
- 'table' => 'nd_reagent',
- 'fields' => array(
- 'nd_geolocation_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'description' => array(
- 'type' => 'varchar'
- ),
- 'latitude' => array(
- 'type' => 'real',
- ),
- 'longitude' => array(
- 'type' => 'real',
- ),
- 'altitude' => array(
- 'type' => 'real',
- ),
- 'geodetic_datum' => array(
- 'type' => 'varchar',
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_geolocation_id',
- ),
- 'referring_tables' => array(
- 'nd_experiment',
- 'nd_geolocationprop'
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_geolocationprop table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_geolocationprop() {
- $description = array();
- $description = array(
- 'table' => 'nd_geolocationprop',
- 'fields' => array(
- 'nd_geolocationprop_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'nd_geolocation_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'type_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'value' => array(
- 'type' => 'varchar',
- ),
- 'rank' => array(
- 'type' => 'int',
- 'not null' => 1,
- 'default' => 1
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_geolocationprop_id',
- ),
- 'foreign keys' => array(
- 'nd_geolocation' => array(
- 'table' => 'nd_geolocation',
- 'columns' => array(
- 'nd_geolocation_id' => 'nd_geolocation_id',
- ),
- ),
- 'cvterm' => array(
- 'table' => 'cvterm',
- 'columns' => array(
- 'type_id' => 'cvterm_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_protocol table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_protocol() {
- $description = array();
- $description = array(
- 'table' => 'nd_protocol',
- 'fields' => array(
- 'nd_protocol_id' => array(
- 'type' => 'serial',
- 'not null' => 1,
- ),
- 'name' => array(
- 'type' => 'varchar',
- 'not null' => 1,
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_protocol_id',
- ),
- 'referring_tables' => array(
- 'nd_experiment_protocol',
- 'nd_protocol_reagent',
- 'nd_protocolprop'
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_protocol_reagent table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_protocol_reagent() {
- $description = array();
- $description = array(
- 'table' => 'nd_protocol_reagent',
- 'fields' => array(
- 'nd_protocol_reagent_id' => array(
- 'type' => 'serial',
- 'not null' => 1,
- ),
- 'nd_protocol_id' => array(
- 'type' => 'int',
- 'not null' => 1,
- ),
- 'nd_reagent_id' => array(
- 'type' => 'int',
- 'not null' => 1,
- ),
- 'type_id' => array(
- 'type' => 'int',
- 'not null' => 1,
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_protocol_reagent_id',
- ),
- 'foreign keys' => array(
- 'nd_protocol' => array(
- 'table' => 'nd_protocol',
- 'columns' => array(
- 'nd_protocol_id' => 'nd_protocol_id',
- ),
- ),
- 'nd_reagent' => array(
- 'table' => 'nd_reagent',
- 'columns' => array(
- 'nd_reagent_id' => 'nd_reagent_id',
- ),
- ),
- 'cvterm' => array(
- 'table' => 'cvterm',
- 'columns' => array(
- 'type_id' => 'cvterm_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_protocolprop table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_protocolprop() {
- $description = array();
- $description = array(
- 'table' => 'nd_protocolprop',
- 'fields' => array(
- 'nd_protocolprop_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'nd_protocol_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'type_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'value' => array(
- 'type' => 'varchar',
- ),
- 'rank' => array(
- 'type' => 'int',
- 'not null' => 1,
- 'default' => 1
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_protocolprop_id',
- ),
- 'foreign keys' => array(
- 'nd_protocol' => array(
- 'table' => 'nd_protocol',
- 'columns' => array(
- 'nd_protocol_id' => 'nd_protocol_id',
- ),
- ),
- 'cvterm' => array(
- 'table' => 'cvterm',
- 'columns' => array(
- 'type_id' => 'cvterm_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_reagent table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_reagent() {
- $description = array();
- $description = array(
- 'table' => 'nd_reagent',
- 'fields' => array(
- 'nd_reagent_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'name' => array(
- 'type' => 'varchar',
- 'length' => 80,
- 'not null' => TRUE
- ),
- 'type_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'feature_id' => array(
- 'type' => 'int',
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_reagent_id',
- ),
- 'foreign keys' => array(
- 'feature' => array(
- 'table' => 'feature',
- 'columns' => array(
- 'feature_id' => 'feature_id',
- ),
- ),
- 'cvterm' => array(
- 'table' => 'cvterm',
- 'columns' => array(
- 'type_id' => 'cvterm_id',
- ),
- ),
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_reagent_relationship table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_reagent_relationship() {
- $description = array();
- $description = array(
- 'table' => 'nd_reagent_relationship',
- 'fields' => array(
- 'nd_reagent_relationship_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'subject_reagent_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'type_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'object_reagent_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_reagent_relationship_id',
- ),
- 'foreign keys' => array(
- 'nd_reagent' => array(
- 'table' => 'feature',
- 'columns' => array(
- 'subject_reagent_id' => 'nd_reagent_id',
- 'object_reagent_id' => 'nd_reagent_id',
- ),
- ),
- 'cvterm' => array(
- 'table' => 'cvterm',
- 'columns' => array(
- 'type_id' => 'cvterm_id',
- ),
- ),
- ),
- );
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_table()
- *
- * Purpose: To add descriptions and foreign keys to default table description
- * Note: This array will be merged with the array from all other implementations
- *
- * @return
- * Array describing the nd_reagentprop table
- *
- * @ingroup tripal_schema_api
- */
- function tripal_natural_diversity_chado_schema_v1_11_nd_reagentprop() {
- $description = array();
- $description = array(
- 'table' => 'nd_reagentprop',
- 'fields' => array(
- 'nd_reagentprop_id' => array(
- 'type' => 'serial',
- 'not null' => '1',
- ),
- 'nd_reagent_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'type_id' => array(
- 'type' => 'int',
- 'not null' => '1',
- ),
- 'value' => array(
- 'type' => 'varchar',
- ),
- 'rank' => array(
- 'type' => 'int',
- 'not null' => 1,
- 'default' => 1
- ),
- ),
- 'primary key' => array(
- '0' => 'nd_reagentprop_id',
- ),
- 'foreign keys' => array(
- 'nd_reagent' => array(
- 'table' => 'nd_reagent',
- 'columns' => array(
- 'nd_reagent_id' => 'nd_reagent_id',
- ),
- ),
- 'cvterm' => array(
- 'table' => 'cvterm',
- 'columns' => array(
- 'type_id' => 'cvterm_id',
- ),
- ),
- ),
- 'referring_tables' => array(
- ),
- );
- return $description;
- }
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