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- <?php
- class operation__analysis extends ChadoField {
-
- public static $default_label = 'Analysis';
-
- public static $description = 'Application of analytical methods to existing data of a specific type.';
-
-
-
-
-
-
-
- public static $default_instance_settings = [
-
- 'term_vocabulary' => 'operation',
-
- 'term_name' => 'Analysis',
-
- 'term_accession' => '2945',
-
-
-
- 'term_fixed' => FALSE,
- ];
-
- public static $default_widget = 'operation__analysis_widget';
-
- public static $default_formatter = 'operation__analysis_formatter';
-
- public function load($entity) {
- $record = $entity->chado_record;
- $settings = $this->instance['settings'];
- $field_name = $this->field['field_name'];
- $field_type = $this->field['type'];
- $field_table = $this->instance['settings']['chado_table'];
- $field_column = $this->instance['settings']['chado_column'];
-
- $name_term = chado_get_semweb_term('analysis', 'name');
-
- $entity->{$field_name}['und'][0] = [
- 'value' => [],
- ];
- if (!$record or !$record->analysis_id) {
- return;
- }
- $linker_field = 'chado-' . $field_table . '__' . $field_column;
- $entity->{$field_name}['und'][0]['value'] = [
- $name_term => $record->{$field_column}->name,
- ];
- $entity->{$field_name}['und'][0][$linker_field] = $record->{$field_column}->analysis_id;
-
- if (property_exists($record->{$field_column}, 'entity_id')) {
- $entity->{$field_name}['und'][0]['value']['entity'] = 'TripalEntity:' . $record->{$field_column}->entity_id;
- }
- }
-
-
- public function elementInfo() {
- $field_term = $this->getFieldTermID();
- $name_term = chado_get_semweb_term('analysis', 'name');
-
- return [
- $field_term => [
- 'operations' => ['eq', 'contains', 'starts'],
- 'sortable' => TRUE,
- 'searchable' => TRUE,
- 'readonly' => FALSE,
- 'type' => 'xs:complexType',
- 'elements' => [
- $name_term => [
- 'searchable' => TRUE,
- 'name' => 'name',
- 'operations' => ['eq', 'ne', 'contains', 'starts'],
- 'sortable' => FALSE,
- 'type' => 'xs:string',
- 'readonly' => TRUE,
- 'required' => FALSE,
- ],
- 'entity' => [
- 'searchable' => FALSE,
- ],
- ],
- ],
- ];
- }
-
- public function query($query, $condition) {
- $alias = $this->field['field_name'];
- $operator = $condition['operator'];
- $field_term_id = $this->getFieldTermID();
- $name_term = $field_term_id . ',' . chado_get_semweb_term('analysis', 'name');
-
- $this->queryJoinOnce($query, 'analysis', $alias, "base.analysis_id = $alias.analysis_id");
-
-
- if ($condition['column'] == $field_term_id or
- $condition['column'] == $name_term) {
- $query->condition("$alias.name", $condition['value'], $operator);
- }
- }
-
- public function queryOrder($query, $order) {
- $alias = $this->field['field_name'];
- $field_term_id = $this->getFieldTermID();
- $name_term = $field_term_id . ',' . chado_get_semweb_term('analysis', 'name');
-
- $this->queryJoinOnce($query, 'analysis', $alias, "base.analysis_id = $alias.analysis_id");
-
- if ($order['column'] == $name_term) {
- $query->orderBy("$alias.name", $order['direction']);
- }
- }
- }
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