Chun-Huai Cheng
68e1fadfa9
Made sure the rename of tripal tables is only performed once when the site is upgraded from v2 to v3.
|
vor 10 Jahren | |
|---|---|---|
| docs | vor 12 Jahren | |
| legacy | vor 10 Jahren | |
| tripal | vor 10 Jahren | |
| tripal_bulk_loader | vor 10 Jahren | |
| tripal_chado | vor 10 Jahren | |
| tripal_panes | vor 10 Jahren | |
| tripal_ws | vor 10 Jahren | |
| README.txt | vor 10 Jahren |
README.txt
What is Tripal?
--------------
Tripal is a collection of open-source freely available Drupal modules
and is a member of the GMOD family of tools. Tripal serves as a web
interface for the GMOD Chado database and is designed to reduce the
time and cost required for construction of an online genomic, genetic
and breeding database.
Features
--------------
- a Chado installer
- Data loaders for ontologies (controlled vocabularies), GFF files,
and FASTA files, publications (from PubMed and AGIRCOLA).
- Generic Bulk Data Loader Modules allows for creation of custom
loading templates.
- Drupal nodes (web pages) are automatically generated for organisms,
genomic features, biological libraries, and stocks
- Supports creation of materialized views for faster data queries.
- Display templates are provided for all content types for
easier customization.
- Views Integration allows for custom listings of data
- Content pieces exposed as blocks allowing the use of Panels for
custom layouts of Tripal Nodes
Required Modules
--------------
- Drupal 7.x
- Drupal Core Modules: Search, Path and PHP modules.
- Drupal contributed modules: Views
- Database containing GMOD Chado Schema (can be installed by the
Tripal Core module)
NOTE: A PostgreSQL database is required for installation of the
Chado Schema
Installation
--------------
Please follow the instructions in the online Tripal User's Guide:
http://tripal.info/tutorials/v2.0/installation
Customization
--------------
Tripal can be used “as is” but also allows for complete customization.
PHP-based template files are provided for all data types to allow for
precise customizations as required by the community. A well-developed
Tripal API provides a uniform set of variables and functions for
accessing any and all data within the Chado database.
--------------
Tripal is a collection of open-source freely available Drupal modules
and is a member of the GMOD family of tools. Tripal serves as a web
interface for the GMOD Chado database and is designed to reduce the
time and cost required for construction of an online genomic, genetic
and breeding database.
Features
--------------
- a Chado installer
- Data loaders for ontologies (controlled vocabularies), GFF files,
and FASTA files, publications (from PubMed and AGIRCOLA).
- Generic Bulk Data Loader Modules allows for creation of custom
loading templates.
- Drupal nodes (web pages) are automatically generated for organisms,
genomic features, biological libraries, and stocks
- Supports creation of materialized views for faster data queries.
- Display templates are provided for all content types for
easier customization.
- Views Integration allows for custom listings of data
- Content pieces exposed as blocks allowing the use of Panels for
custom layouts of Tripal Nodes
Required Modules
--------------
- Drupal 7.x
- Drupal Core Modules: Search, Path and PHP modules.
- Drupal contributed modules: Views
- Database containing GMOD Chado Schema (can be installed by the
Tripal Core module)
NOTE: A PostgreSQL database is required for installation of the
Chado Schema
Installation
--------------
Please follow the instructions in the online Tripal User's Guide:
http://tripal.info/tutorials/v2.0/installation
Customization
--------------
Tripal can be used “as is” but also allows for complete customization.
PHP-based template files are provided for all data types to allow for
precise customizations as required by the community. A well-developed
Tripal API provides a uniform set of variables and functions for
accessing any and all data within the Chado database.