tripal_views.views.inc 27 KB

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  1. <?php
  2. include('views/handlers/views_handler_join_chado_through_linking.inc');
  3. include('views/handlers/views_handler_join_chado_aggregator.inc');
  4. include('tripal_views.api.inc');
  5. // TEMPORARY
  6. include('views/chado_linking.TMP.inc');
  7. /**
  8. * @file
  9. * Tripal Views Integration
  10. *
  11. * @defgroup views Views Integration
  12. * @{
  13. * Provide rules for formatting and composition of fields
  14. * @}
  15. *
  16. * @defgroup views_field_handlers Views Field Handlers
  17. * @{
  18. * Provide rules for formatting and composition of fields
  19. * @}
  20. * @ingroup views
  21. *
  22. * @defgroup views_filter_handlers Views Filter Handlers
  23. * @{
  24. * Provide the ability to filter based on specified data
  25. * @}
  26. * @ingroup views
  27. *
  28. * @defgroup views_sort_handlers Views Sort Handlers
  29. * @{
  30. * Provide methods describing how specific data should be sorted
  31. * @}
  32. * @ingroup views
  33. *
  34. * @defgroup views_argument_handlers Views Arguement Handlers
  35. * @{
  36. * Provide the ability to filter pased on arguments in the path of the view
  37. * @}
  38. * @ingroup views
  39. */
  40. /**
  41. * Implements hook_views_handlers()
  42. *
  43. * Purpose: Register all custom handlers with views
  44. * where a handler describes either "the type of field",
  45. * "how a field should be filtered", "how a field should be sorted"
  46. *
  47. * @return
  48. * An array of handler definitions
  49. *
  50. * @ingroup tripal_views
  51. */
  52. function tripal_views_views_handlers() {
  53. return array(
  54. 'info' => array(
  55. 'path' => drupal_get_path('module', 'tripal_views') . '/views/handlers',
  56. ),
  57. 'handlers' => array(
  58. // Custom Chado Handlers
  59. 'chado_views_handler_field_aggregate' => array(
  60. 'parent' => 'chado_views_handler_field',
  61. ),
  62. 'chado_views_handler_filter_select_cvterm' => array(
  63. 'parent' => 'views_handler_filter_chado_select_cvterm_name',
  64. ),
  65. 'chado_views_handler_filter_select_string' => array(
  66. 'parent' => 'chado_views_handler_filter_string',
  67. ),
  68. // Join Handlers
  69. 'views_handler_join_chado_aggregator' => array(
  70. 'parent' => 'views_join',
  71. ),
  72. 'views_handler_join_chado_through_linking' => array(
  73. 'parent' => 'views_join',
  74. ),
  75. // Other Custom Handlers
  76. 'views_handler_filter_no_results' => array(
  77. 'parent' => 'views_handler_filter'
  78. ),
  79. // Old Handlers (deprecated)
  80. 'views_handler_field_node_optional' => array(
  81. 'parent' => 'views_handler_field_node',
  82. ),
  83. 'views_handler_field_chado_count' => array(
  84. 'parent' => 'views_handler_field',
  85. ),
  86. 'views_handler_field_dbxref_accession_link' => array(
  87. 'parent' => 'views_handler_field',
  88. ),
  89. 'views_handler_field_readable_date' => array(
  90. 'parent' => 'views_handler_field',
  91. ),
  92. // Old handlers with new counterparts (deprecated)
  93. 'views_handler_filter_chado_select_string' => array(
  94. 'parent' => 'views_handler_filter_string',
  95. ),
  96. 'views_handler_filter_chado_select_cvterm_name' => array(
  97. 'parent' => 'views_handler_filter_string',
  98. ),
  99. // Wrappers for Default Views Handlers-----
  100. // Field Handlers
  101. 'chado_views_handler_field' => array(
  102. 'parent' => 'views_handler_field'
  103. ),
  104. 'chado_views_handler_field_boolean' => array(
  105. 'parent' => 'views_handler_field_boolean'
  106. ),
  107. 'chado_views_handler_field_counter' => array(
  108. 'parent' => 'views_handler_field_counter'
  109. ),
  110. 'chado_views_handler_field_custom' => array(
  111. 'parent' => 'views_handler_field_custom'
  112. ),
  113. 'chado_views_handler_field_date' => array(
  114. 'parent' => 'views_handler_field_date'
  115. ),
  116. 'chado_views_handler_field_markup' => array(
  117. 'parent' => 'views_handler_field_markup'
  118. ),
  119. 'chado_views_handler_field_math' => array(
  120. 'parent' => 'views_handler_field_math'
  121. ),
  122. 'chado_views_handler_field_numeric' => array(
  123. 'parent' => 'views_handler_field_numeric'
  124. ),
  125. // Filter Handlers
  126. 'chado_views_handler_filter_string' => array(
  127. 'parent' => 'views_handler_filter_string',
  128. ),
  129. 'chado_views_handler_filter_boolean_operator' => array(
  130. 'parent' => 'views_handler_filter_boolean_operator',
  131. ),
  132. 'chado_views_handler_filter_date' => array(
  133. 'parent' => 'views_handler_filter_date',
  134. ),
  135. 'chado_views_handler_filter_equality' => array(
  136. 'parent' => 'views_handler_filter_equality',
  137. ),
  138. 'chado_views_handler_filter_float' => array(
  139. 'parent' => 'views_handler_filter_float',
  140. ),
  141. 'chado_views_handler_filter_numeric' => array(
  142. 'parent' => 'views_handler_filter_numeric',
  143. ),
  144. 'views_handler_filter_file_upload' => array(
  145. 'parent' => 'views_handler_filter',
  146. ),
  147. // Sort Handlers
  148. 'chado_views_handler_sort' => array(
  149. 'parent' => 'views_handler_sort'
  150. ),
  151. ),
  152. );
  153. }
  154. /**
  155. * Implements hook_views_pre_render
  156. *
  157. * Purpose: Intercepts the view after the query has been executed
  158. * All the results are stored in $view->result
  159. * Looking up the NID here ensures the query is only executed once
  160. * for all stocks in the table.
  161. *
  162. * @todo add if !<chado/drupal same db> around NID portion
  163. *
  164. * @ingroup tripal_views
  165. */
  166. function tripal_views_views_pre_render(&$view) {
  167. //Add Node IDs in to every table that needs them
  168. // @see tripal_views.views.inc
  169. tripal_views_add_node_ids_to_view($view);
  170. // We need to unset the exposed_input for the view so we can repopulate that
  171. // variable. This is necessary if we're using the file_upload_combo
  172. // custom form element which adds the file_path variable to the $_GET after the
  173. // view has populated the $view->exposed_input variable
  174. unset($view->exposed_input);
  175. // we want to add to the bottom of the views the form for downloading
  176. // results in other formats (e.g. Excel, FASTA, CSV, etc.). The Views Data
  177. // Export module provides small images at the bottom, but we want to provide
  178. // a more intutitive interface for getting different file formats
  179. $form = drupal_get_form('tripal_views_data_export_download_form', $view, $display_id, $args);
  180. $view->attachment_after = $form;
  181. }
  182. /**
  183. * Adds nid fields to all pertinent view results
  184. *
  185. * Purpose: To add basetable_nid fields to all result arrays of a view
  186. * only if the basetable_nid field is added. This function will only be
  187. * called if chado/drupal are not in the same database (ie: only if
  188. * a join between the base and node table isn't possible.
  189. *
  190. * Note: Supports adding Node IDs to analysis, feature, library, organism, stock
  191. *
  192. * @param $view
  193. * the view object passed to hook_views_pre_render
  194. *
  195. * @return the views object with nids added to the result array
  196. *
  197. * @ingroup tripal_views
  198. */
  199. function tripal_views_add_node_ids_to_view(&$view) {
  200. //-----Analysis----------------------------------------------
  201. if (!empty($view->field['analysis_nid'])) {
  202. // retrieve the analysis_id for each record in the views current page
  203. $analysis_ids = array();
  204. foreach ($view->result as $row_num => $row) {
  205. if (!empty($row->analysis_id)) {
  206. //we're looking at analysis id field already in table
  207. $analysis_ids[$row_num] = $row->analysis_id;
  208. }
  209. else {
  210. //we're looking at analysis id added by field handler
  211. $analysis_ids[$row_num] = $row->analysis_analysis_id;
  212. }
  213. }
  214. $unique_analysis_ids = array_filter($analysis_ids);
  215. $unique_analysis_ids = array_unique($unique_analysis_ids);
  216. if (!empty($unique_analysis_ids)) {
  217. // Using the list of analysis_ids from the view
  218. // lookup the NIDs from drupal
  219. // and add that to the results of the view
  220. $sql = "SELECT nid, analysis_id FROM {chado_analysis} WHERE analysis_id IN (" . implode(',', $unique_analysis_ids) . ")";
  221. $resource = db_query($sql);
  222. while ($r = db_fetch_object($resource)) {
  223. $keys = array_keys($analysis_ids, $r->analysis_id);
  224. foreach ($keys as $k) {
  225. $view->result[$k]->analysis_nid = $r->nid;
  226. }
  227. }
  228. } // if there are any analysis'
  229. } //end of case for analysis NID
  230. //-----Feature-----------------------------------------------
  231. if (!empty($view->field['feature_nid'])) {
  232. // retrieve the feature_id for each record in the views current page
  233. $feature_ids = array();
  234. foreach ($view->result as $row_num => $row) {
  235. if (!empty($row->feature_id)) {
  236. //we're looking at feature id field already in table
  237. $feature_ids[$row_num] = $row->feature_id;
  238. }
  239. else {
  240. //we're looking at feature id added by field handler
  241. $feature_ids[$row_num] = $row->feature_feature_id;
  242. }
  243. }
  244. $unique_feature_ids = array_filter($feature_ids);
  245. $unique_feature_ids = array_unique($unique_feature_ids);
  246. if (!empty($unique_feature_ids)) {
  247. // Using the list of feature_ids from the view
  248. // lookup the NIDs from drupal
  249. // and add that to the results of the view
  250. $sql = "SELECT nid, feature_id FROM {chado_feature} WHERE feature_id IN (" . implode(',', $unique_feature_ids) . ")";
  251. $resource = db_query($sql);
  252. while ($r = db_fetch_object($resource)) {
  253. $keys = array_keys($feature_ids, $r->feature_id);
  254. foreach ($keys as $k) {
  255. $view->result[$k]->feature_nid = $r->nid;
  256. }
  257. }
  258. } // if there are any features
  259. } //end of case for feature NID
  260. //-----Library-----------------------------------------------
  261. if (!empty($view->field['library_nid'])) {
  262. // retrieve the library_id for each record in the views current page
  263. $library_ids = array();
  264. foreach ($view->result as $row_num => $row) {
  265. if (!empty($row->library_id)) {
  266. //we're looking at library id field already in table
  267. $library_ids[$row_num] = $row->library_id;
  268. }
  269. else {
  270. //we're looking at library id added by field handler
  271. $library_ids[$row_num] = $row->library_library_id;
  272. }
  273. }
  274. $unique_library_ids = array_filter($library_ids);
  275. $unique_library_ids = array_unique($unique_library_ids);
  276. if (!empty($unique_library_ids)) {
  277. // Using the list of library_ids from the view
  278. // lookup the NIDs from drupal
  279. // and add that to the results of the view
  280. $sql = "SELECT nid, library_id FROM {chado_library} WHERE library_id IN (" . implode(',', $unique_library_ids) . ")";
  281. $resource = db_query($sql);
  282. while ($r = db_fetch_object($resource)) {
  283. $keys = array_keys($library_ids, $r->library_id);
  284. foreach ($keys as $k) {
  285. $view->result[$k]->library_nid = $r->nid;
  286. }
  287. }
  288. } // if there are libraries
  289. } //end of case for library NID
  290. //-----Organism----------------------------------------------
  291. if (!empty($view->field['organism_nid'])) {
  292. // retrieve the organism_id for each record in the views current page
  293. $organism_ids = array();
  294. foreach ($view->result as $row_num => $row) {
  295. if (!empty($row->organism_id)) {
  296. //we're looking at organism id field already in table
  297. $organism_ids[$row_num] = $row->organism_id;
  298. }
  299. else {
  300. //we're looking at organism id added by field handler
  301. $organism_ids[$row_num] = $row->organism_organism_id;
  302. }
  303. }
  304. $unique_organism_ids = array_filter($organism_ids);
  305. $unique_organism_ids = array_unique($unique_organism_ids);
  306. if (!empty($unique_organism_ids)) {
  307. // Using the list of organism_ids from the view
  308. // lookup the NIDs from drupal
  309. // and add that to the results of the view
  310. $sql = "SELECT nid, organism_id FROM {chado_organism} WHERE organism_id IN (" . implode(',', $unique_organism_ids) . ")";
  311. $resource = db_query($sql);
  312. while ($r = db_fetch_object($resource)) {
  313. $keys = array_keys($organism_ids, $r->organism_id);
  314. foreach ($keys as $k) {
  315. $view->result[$k]->organism_nid = $r->nid;
  316. }
  317. }
  318. } // if there are organisms
  319. } //end of case for organism NID
  320. //-----Stock-------------------------------------------------
  321. if (!empty($view->field['stock_nid'])) {
  322. // retrieve the stock_id for each record in the views current page
  323. $stock_ids = array();
  324. foreach ($view->result as $row_num => $row) {
  325. if (!empty($row->stock_id)) {
  326. //we're looking at stock id field already in table
  327. $stock_ids[$row_num] = $row->stock_id;
  328. }
  329. else {
  330. //we're looking at stock id added by field handler
  331. $stock_ids[$row_num] = $row->stock_stock_id;
  332. }
  333. }
  334. $unique_stock_ids = array_filter($stock_ids);
  335. $unique_stock_ids = array_unique($unique_stock_ids);
  336. if (!empty($unique_stock_ids)) {
  337. // Using the list of stock_ids from the view
  338. // lookup the NIDs from drupal
  339. // and add that to the results of the view
  340. $sql = "SELECT nid, stock_id FROM {chado_stock} WHERE stock_id IN (" . implode(',', $unique_stock_ids) . ")";
  341. $resource = db_query($sql);
  342. while ($r = db_fetch_object($resource)) {
  343. $keys = array_keys($stock_ids, $r->stock_id);
  344. foreach ($keys as $k) {
  345. $view->result[$k]->stock_nid = $r->nid;
  346. }
  347. }
  348. } //if there are stocks
  349. } //end of case for stock NID
  350. return $view;
  351. }
  352. /**
  353. * Generates a dynamic data array for Views
  354. *
  355. * Purpose: This function is a hook used by the Views module. It populates and
  356. * returns a data array that specifies for the Views module the base table,
  357. * the tables it joins with and handlers. The data array is populated
  358. * using the data stored in the tripal_views tables.
  359. *
  360. * @return a data array formatted for the Views module
  361. *
  362. * @ingroup tripal_views
  363. */
  364. function tripal_views_views_data() {
  365. // Make sure all chado tables are integrated
  366. tripal_views_integrate_all_chado_tables();
  367. // Define Global Fields
  368. // Filter handler that lets the admin say:
  369. // "Show no results until they enter search parameters"
  370. $data['views']['search_results'] = array(
  371. 'title' => t('Search Results'),
  372. 'help' => t('Delay results until Apply/Search is clicked by the user.'),
  373. 'filter' => array(
  374. 'handler' => 'views_handler_filter_no_results',
  375. ),
  376. );
  377. $tvi_query = db_query('SELECT * FROM {tripal_views}');
  378. while ($tvi_row = db_fetch_object($tvi_query)) {
  379. // check to see if this is the lightest (drupal-style) priority setup for this table
  380. // if not then don't use this definition
  381. $lightest_priority_setup = tripal_views_is_lightest_priority_setup($tvi_row->setup_id, $tvi_row->table_name);
  382. if (!$lightest_priority_setup) {
  383. continue;
  384. }
  385. // ids we'll use for queries
  386. $setup_id = $tvi_row->setup_id;
  387. $mview_id = $tvi_row->mview_id;
  388. // holds the base table name and fields
  389. $base_table = '';
  390. $base_fields = array();
  391. // indicated whether the current table is a base table or not
  392. $is_base_table = $tvi_row->base_table;
  393. // populate the base table name and fields. If an $mview_id is given
  394. // then get the materialized view info, otherwise get the Chado table info
  395. if ($mview_id) {
  396. // get the base table name from the materialized view
  397. $sql = "SELECT name, mv_specs FROM {tripal_mviews} WHERE mview_id = %d";
  398. $mview_table = db_fetch_object(db_query($sql, $mview_id));
  399. $base_table = $mview_table->name;
  400. // get the columns in this materialized view. They are separated by commas
  401. // where the first word is the column name and the rest is the type
  402. $columns = explode(",", $mview_table->mv_specs);
  403. foreach ($columns as $column) {
  404. $column = trim($column); // trim trailing and leading spaces
  405. preg_match("/^(.*?)\ (.*?)$/", $column, $matches);
  406. $column_name = $matches[1];
  407. $column_type = $matches[2];
  408. $base_fields[$column_name] = array(
  409. 'column_name' => $column_name,
  410. 'type' => $column_type,
  411. );
  412. }
  413. // get the field name and descriptions
  414. $sql = "SELECT * FROM {tripal_views_field} WHERE setup_id=%d";
  415. $query = db_query($sql, $setup_id);
  416. while ($field = db_fetch_object($query)) {
  417. $base_fields[$field->column_name]['name'] = $field->name;
  418. $base_fields[$field->column_name]['help'] = $field->description;
  419. }
  420. }
  421. else {
  422. $base_table = $tvi_row->table_name;
  423. // The chado table could be a regular Chado table or a custom table
  424. // in the chado database. Therefore we'll check both
  425. $table_desc = module_invoke_all('chado_' . $base_table . '_schema');
  426. if (!$table_desc) {
  427. $table_desc = tripal_get_chado_custom_schema($base_table);
  428. }
  429. $fields = $table_desc['fields'];
  430. if (!is_array($fields)) {
  431. $fields = array();
  432. drupal_set_message(t('No fields were described for this table (%table) through the Tripal Schema API.', array('%table' => $base_table)), 'error');
  433. }
  434. foreach ($fields as $column => $attrs) {
  435. $base_fields[$column] = array(
  436. 'column_name' => $column,
  437. 'type' => $attrs['type'],
  438. );
  439. }
  440. // get the field name and descriptions
  441. $sql = "SELECT * FROM {tripal_views_field} WHERE setup_id=%d";
  442. $query = db_query($sql, $setup_id);
  443. while ($field = db_fetch_object($query)) {
  444. $base_fields[$field->column_name]['name'] = $field->name;
  445. $base_fields[$field->column_name]['help'] = $field->description;
  446. }
  447. }
  448. // Setup the base table info in the data array
  449. $data[$base_table]['table']['group'] = t("$tvi_row->name");
  450. if ($is_base_table) {
  451. $data[$base_table]['table']['base'] = array(
  452. 'group' => "$tvi_row->name",
  453. 'title' => "$tvi_row->name",
  454. 'help' => $tvi_row->comment,
  455. );
  456. }
  457. else {
  458. $data[$base_table]['table'] = array(
  459. 'group' => "$tvi_row->name",
  460. 'title' => "$tvi_row->name",
  461. 'help' => $tvi_row->comment,
  462. );
  463. }
  464. // first add the fields
  465. foreach ($base_fields as $column_name => $base_field) {
  466. $data[$base_table][$column_name] = array(
  467. 'title' => t($base_field['name']),
  468. 'help' => t($base_field['help']),
  469. 'field' => array(
  470. 'click sortable' => TRUE,
  471. ),
  472. );
  473. // now add the handlers
  474. $sql = "SELECT * FROM {tripal_views_handlers} WHERE setup_id = %d AND column_name = '%s'";
  475. $handlers = db_query($sql, $setup_id, $column_name);
  476. while ($handler = db_fetch_object($handlers)) {
  477. $data[$base_table][$column_name][$handler->handler_type]['handler'] = $handler->handler_name;
  478. };
  479. }
  480. // now add the joins
  481. $sql = "SELECT * FROM {tripal_views_join} WHERE setup_id = %d";
  482. $joins = db_query($sql, $setup_id);
  483. if (!isset($joins)) {
  484. $joins = array();
  485. }
  486. while ($join = db_fetch_object($joins)) {
  487. $left_table = $join->left_table;
  488. $left_field = $join->left_field;
  489. $base_field = $join->base_field;
  490. $handler = $join->handler;
  491. // add join entry
  492. $data[$base_table]['table']['join'][$left_table] = array(
  493. 'left_field' => $left_field,
  494. 'field' => $base_field,
  495. );
  496. if ($handler) {
  497. $data[$base_table]['table']['join'][$left_table]['handler'] = $handler;
  498. }
  499. // check to see if the join table is one that correlates with Drupal nodes
  500. // if so, there will be a chado_<table_name> table in the Drupal database
  501. // if there is, then we need to add the linking join information
  502. if (db_table_exists("chado_$left_table")) {
  503. // join the mview to the linker table
  504. $data[$base_table]['table']['join']["chado_$left_table"] = array(
  505. 'left_field' => $left_field,
  506. 'field' => $base_field,
  507. );
  508. }
  509. }
  510. }
  511. // TEMPORARY: needed to join chado base tables to node linking tables
  512. // currently done using old-style data arrays
  513. $data = tripal_views_TEMPORARY_chado_linking_data($data);
  514. return $data;
  515. }
  516. /**
  517. *
  518. * @ingroup tripal_views
  519. */
  520. function tripal_views_views_data_alter(&$data) {
  521. $tvi_query = db_query('SELECT * FROM {tripal_views}');
  522. // iterate through the views that we manage
  523. while ($tvi_row = db_fetch_object($tvi_query)) {
  524. //ids we'll use for queries
  525. $mview_id = $tvi_row->mview_id;
  526. $setup_id = $tvi_row->setup_id;
  527. // iterate through the columns and alter the existing data array for
  528. // joins to other tables
  529. $sql = "SELECT * FROM {tripal_views_join} WHERE setup_id = %d";
  530. $joins = db_query($sql, $setup_id);
  531. while ($join = db_fetch_object($joins)) {
  532. $left_table = $join->left_table;
  533. $left_field = $join->left_field;
  534. $base_field = $join->base_field;
  535. $base_table = $join->base_table;
  536. // add the recipricol join entries for each column
  537. if (array_key_exists($left_table, $data)) {
  538. $data[$left_table]['table']['join'][$base_table] = array(
  539. 'left_field' => $base_field,
  540. 'field' => $left_field,
  541. );
  542. }
  543. // check to see if this table is one that correlates with Drupal nodes
  544. // if so, there will be a chado_<table_name> table in the Drupal database
  545. // if there is, then we need to add the linking join information. We did
  546. // this step in the hook_views_data function above, but now we need
  547. // to add the reciprical joins
  548. if (db_table_exists("chado_$left_table")) {
  549. // join the linker table to the mview
  550. if (array_key_exists("chado_$left_table", $data)) {
  551. $data["chado_$left_table"]['table']['join'][$base_table] = array(
  552. 'left_field' => $base_field,
  553. 'field' => $left_field,
  554. );
  555. // Join the node table to the view by way of the chado linker table
  556. $data['node']['table']['join'][$base_table] = array(
  557. 'left_table' => "chado_$left_table",
  558. 'left_field' => 'nid',
  559. 'field' => 'nid',
  560. );
  561. }
  562. }
  563. }
  564. }
  565. return $data;
  566. }
  567. /**
  568. * Implementation of hook_views_plugins().
  569. */
  570. function tripal_views_views_plugins() {
  571. $tc_path = drupal_get_path('module', 'tripal_views');
  572. $style_defaults = array(
  573. 'path' => $tc_path . '/views_data_export/plugins',
  574. 'parent' => 'views_data_export',
  575. 'theme' => 'views_data_export',
  576. 'theme path' => $tc_path . '/views_data_export/theme',
  577. 'theme file' => 'tripal_views_data_export.theme.inc',
  578. 'uses row plugin' => FALSE,
  579. 'uses fields' => TRUE,
  580. 'uses options' => TRUE,
  581. 'type' => 'data_export',
  582. );
  583. // add FASTA format as a new style for the existing views_export_data Display
  584. return array(
  585. 'style' => array(
  586. 'views_data_export_fasta' => array(
  587. 'title' => t('FASTA file'),
  588. 'help' => t('Display results in FASTA format. All fields in results are on the definition line while the feature.residues field must be present .'),
  589. 'handler' => 'tripal_views_plugin_style_export_fasta',
  590. // Views Data Export element that will be used to set additional headers when serving the feed.
  591. 'export headers' => array('Content-type: text/plain; charset=utf-8'),
  592. // Views Data Export element mostly used for creating some additional classes and template names.
  593. 'export feed type' => 'fasta',
  594. 'export feed text' => 'FASTA',
  595. 'export feed file' => '%view.fna',
  596. 'export feed icon' => $tc_path . '/views_data_export/images/fasta.png',
  597. 'additional themes' => array(
  598. 'views_data_export_fasta_header' => 'style',
  599. 'views_data_export_fasta_body' => 'style',
  600. 'views_data_export_fasta_footer' => 'style',
  601. ),
  602. 'additional themes base' => 'views_data_export_fasta',
  603. ) + $style_defaults,
  604. ),
  605. );
  606. }
  607. /**
  608. * Implementation of hook_views_pre_view().
  609. */
  610. function tripal_views_views_pre_view(&$view, &$display_id, &$args) {
  611. // merge the $_GET and $_POST into the $_GET. This is because
  612. // Views and Views Data Export modules only uses the $_GET variable but
  613. // file uploads require $_POST. We need to make sure these two modules
  614. // have access to everything needed for this view to work properlys
  615. $_GET = array_merge($_GET, $_POST);
  616. }
  617. /**
  618. * Implementation of hook_views_pre_build().
  619. */
  620. /* function tripal_views_views_pre_render(&$view, &$display_id, &$args){
  621. // we want to add to the bottom of the views the form for downloading
  622. // results in other formats (e.g. Excel, FASTA, CSV, etc.). The Views Data
  623. // Export module provides small images at the bottom, but we want to provide
  624. // a more intutitive interface for getting different file formats
  625. $form = drupal_get_form('tripal_views_data_export_download_form',$view,$display_id,$args);
  626. $view->attachment_after = $form;
  627. }*/
  628. /**
  629. * the Download Views data export form
  630. */
  631. function tripal_views_data_export_download_form(&$form_state, $view, $display_id, $args) {
  632. $form = array();
  633. $urls = array();
  634. // get any export_data_export displays
  635. $displays = $view->display;
  636. $options = array();
  637. $default = '';
  638. $current_display = $view->current_display;
  639. foreach ($displays as $name => $display) {
  640. if (preg_match("/^views_data_export/", $name)) {
  641. // only add this display to the form if it is attached
  642. $display_options = $display->display_options;
  643. if(strcmp($display_options['displays'][$current_display],$current_display)!=0){
  644. continue;
  645. }
  646. // set the first item as default
  647. if (!$default) {
  648. $default = $display->id;
  649. }
  650. $path = $display->display_options['path'];
  651. $query = $view->get_exposed_input(); // retrieves elements in $_GET array
  652. $urls[$display->id]['path'] = $path;
  653. $urls[$display->id]['query'] = $query;
  654. // add the new item to the options array
  655. $options[$display->id] = $display->display_title;
  656. }
  657. }
  658. // only generate the form if we have views_data_export displays attached
  659. // to this view
  660. if (count($options) > 0) {
  661. $form_state['storage']['urls'] = $urls;
  662. $form['#cache'] = TRUE;
  663. // we want the form to redirect to a new window
  664. $form['#attributes']['target'] = "_blank";
  665. // now build the form elements
  666. $form['downloads'] = array(
  667. '#type' => 'fieldset',
  668. '#title' => 'Download Results',
  669. '#collapsible' => TRUE,
  670. '#collapsed' => FALSE
  671. );
  672. $form['downloads']['file_type'] = array(
  673. '#title' => t('File format'),
  674. '#type' => 'radios',
  675. '#options' => $options,
  676. '#required' => TRUE,
  677. '#default_value' => $default,
  678. '#description' => t('Please select a file format to download'),
  679. );
  680. $form['downloads']['submit'] = array(
  681. '#value' => t('Download Results'),
  682. '#type' => 'submit',
  683. );
  684. }
  685. return $form;
  686. }
  687. /**
  688. * Submit for the Download Views data export form
  689. */
  690. function tripal_views_data_export_download_form_submit($form, &$form_state) {
  691. $urls = $form_state['storage']['urls'];
  692. $display_id = $form_state['values']['file_type'];
  693. drupal_goto($urls[$display_id]['path'], $urls[$display_id]['query']);
  694. }