| 123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235 | <?php/** * @file * Handles install, uninstall, disable and enable functionality including database tables. * * @ingroup tripal_contact *//** * Implements hook_disable(). * Disable default views when module is disabled * * @ingroup tripal_contact */function tripal_contact_disable() {  // Disable all default views provided by this module  require_once("tripal_contact.views_default.inc");  $views = tripal_contact_views_default_views();  foreach (array_keys($views) as $view_name) {    tripal_disable_view($view_name,FALSE,array('suppress_error' => TRUE));  }}/** * Implementation of hook_requirements(). * * @ingroup tripal_contact */function tripal_contact_requirements($phase) {  $requirements = array();  if ($phase == 'install') {    // make sure chado is installed    if (!$GLOBALS["chado_is_installed"]) {      $requirements ['tripal_contact'] = array(        'title' => "tripal_contact",        'value' => "ERROR: Chado must be installed before this module can be enabled",        'severity' => REQUIREMENT_ERROR,      );    }  }  return $requirements;}/** * Implementation of hook_install(). * * @ingroup tripal_contact */function tripal_contact_install() {  // Add the contactprop table to Chado.  tripal_contact_add_custom_tables();  // Add loading of the the tripal contact ontology to the job queue.  $obo_path = '{tripal_contact}/files/tcontact.obo';  $obo_id = tripal_insert_obo('Tripal Contacts', $obo_path);  tripal_submit_obo_job(array('obo_id' => $obo_id));  // Add cvterms for relationship types.  tripal_contact_add_cvs();  tripal_contact_add_cvterms();  // Set the default vocabularies.  tripal_set_default_cv('contact', 'type_id', 'tripal_contact');  tripal_set_default_cv('contactprop', 'type_id', 'tripal_contact');  tripal_set_default_cv('contact_relationship', 'type_id', 'contact_relationship');}/** * Implementation of hook_uninstall(). * * @ingroup tripal_contact */function tripal_contact_uninstall() {  /*  // remove our custom block visibility settings per node type  db_delete('block_node_type')    ->condition('module', 'chado_contact')    ->condition('delta', 'contbase')    ->execute();    */}/** * Adds any cvs needed by this module. * * @ingroup tripal_contact */function tripal_contact_add_cvs() {  // Add the cv for contact properties. This is a default vocabulary in the event  // that a user does not want to use the tripal_contact vocabulary  tripal_insert_cv(    'contact_property',    'Contains properties for contacts. This can be used if the tripal_contact vocabulary (which is default for contacts in Tripal) is not desired.'  );  // add the cv for the contact type. This is a default vocabulary in the event  // that a user does not want to use the tripal_contact vocabulary  tripal_insert_cv(    'contact_type',    'Contains types of contacts. This can be used if the tripal_contact vocabulary (which is default for contacts in Tripal) is not desired.'  );  // Add the cv for the tripal_contact vocabulary which is loaded via the OBO  tripal_insert_cv(   'tripal_contact',   'A heirarchical set of terms for describing a contact. It is intended to be used as the default vocabularies in Tripal for contact types and contact properties.'  );  // add the cv for contact relationships  tripal_insert_cv(    'contact_relationship',    'Contains types of relationships between contacts.'  );}/** * Adds any cvterms needed by this module. * * @ingroup tripal_contact */function tripal_contact_add_cvterms() {}/** * Implementation of hook_schema(). * * @ingroup tripal_contact */function tripal_contact_schema() {  $schema['chado_contact'] = array(    'fields' => array(      'vid' => array(        'type' => 'int',        'unsigned' => TRUE,        'not null' => TRUE,        'default' => 0      ),      'nid' => array(        'type' => 'int',        'unsigned' => TRUE,        'not null' => TRUE,        'default' => 0      ),      'contact_id' => array(        'type' => 'int',        'not null' => TRUE,        'default' => 0      )    ),    'indexes' => array(      'contact_id' => array('contact_id')    ),    'unique keys' => array(      'nid_vid' => array('nid', 'vid'),      'vid' => array('vid')    ),    'primary key' => array('nid'),  );  return $schema;}/** * Add any custom tables needed by this module. * - Contactprop: keep track of properties of contact * * @ingroup tripal_contact */function tripal_contact_add_custom_tables(){  $schema = array (    'table' => 'contactprop',    'fields' => array (      'contactprop_id' => array (        'type' => 'serial',        'not null' => true,      ),      'contact_id' => array (        'type' => 'int',        'not null' => true,      ),      'type_id' => array (        'type' => 'int',        'not null' => true,      ),      'value' => array (        'type' => 'text',        'not null' => false,      ),      'rank' => array (        'type' => 'int',        'not null' => true,        'default' => 0,      ),    ),    'primary key' => array (      0 => 'contactprop_id',    ),    'unique keys' => array (      'contactprop_c1' => array (        0 => 'contact_id',        1 => 'type_id',        2 => 'rank',      ),    ),    'indexes' => array (      'contactprop_idx1' => array (        0 => 'contact_id',      ),      'contactprop_idx2' => array (        0 => 'type_id',      ),    ),    'foreign keys' => array (      'cvterm' => array (        'table' => 'cvterm',        'columns' => array (          'type_id' => 'cvterm_id',        ),      ),      'contact' => array (        'table' => 'contact',        'columns' => array (          'contact_id' => 'contact_id',        ),      ),    ),  );  chado_create_custom_table('contactprop', $schema, TRUE);}
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