| .. |
|
empty_landmarks.fasta
|
baa68f391c
All unit tests now pass, added additional gff files for tests, modified a few functions to correctly do tests, removed dependency on remote files in favour of local files in the data directory for tests.
|
4 ani în urmă |
|
gff_duplicate_ids.gff
|
baa68f391c
All unit tests now pass, added additional gff files for tests, modified a few functions to correctly do tests, removed dependency on remote files in favour of local files in the data directory for tests.
|
4 ani în urmă |
|
gff_invalidstartend.gff
|
da939901ea
Fixed ID regular expression check in GFF loader, added new test for invalid start end values and corresponding test gff file
|
4 ani în urmă |
|
gff_phase.gff
|
9534e04478
GFF unit test data related to phase tests
|
4 ani în urmă |
|
gff_phase_invalid_character.gff
|
9534e04478
GFF unit test data related to phase tests
|
4 ani în urmă |
|
gff_phase_invalid_number.gff
|
9534e04478
GFF unit test data related to phase tests
|
4 ani în urmă |
|
gff_protein_generation.gff
|
baa68f391c
All unit tests now pass, added additional gff files for tests, modified a few functions to correctly do tests, removed dependency on remote files in favour of local files in the data directory for tests.
|
4 ani în urmă |
|
gff_rightarrow_id.gff
|
5e98649061
2 additional unit tests and corresponding gff files related to ID validations for unescaped whitespaces and IDs beginning with right arrow character
|
4 ani în urmă |
|
gff_score.gff
|
a396ae070a
Added new test to check on score values - integer, double and negative double
|
4 ani în urmă |
|
gff_seqid_invalid_character.gff
|
bba096323a
Fixed a mix up of validation for ID which should have been for seqid. Removed validation for ID. Altered tests to properly work. Added new test for invalid character in seqid/landmark id
|
4 ani în urmă |
|
gff_strand.gff
|
ea8b4a0b58
GFF fix for strands that are specified as question marks + finish php unit test for strands
|
4 ani în urmă |
|
gff_strand_invalid.gff
|
d25737f6e4
GFF loader modification to throw error if strand character is invalid. Added unit test with an invalid strand gff to confirm it works.
|
4 ani în urmă |
|
gff_tag_parent_verification.gff
|
cbf205fced
Unit test - parent verification
|
4 ani în urmă |
|
gff_tag_unescaped_character.gff
|
2f66751d03
2 validation checks for attribute tag name and attribute tag value plus unit test for tag name that contains a comma
|
4 ani în urmă |
|
gff_tagvalue_encoded_character.gff
|
5260a06a06
This latest commit detects a bug using the testGFFImporterEscapedTagValueWithComma unit test
|
4 ani în urmă |
|
gff_tagvalue_unescaped_character.gff
|
085cf9eabd
Tag value unit test added
|
4 ani în urmă |
|
gff_unescaped_ids.gff
|
5e98649061
2 additional unit tests and corresponding gff files related to ID validations for unescaped whitespaces and IDs beginning with right arrow character
|
4 ani în urmă |
|
short_scaffold.fasta
|
a392175e24
Add unit tests for GFF3Importer Attributes.
|
4 ani în urmă |
|
simpleGFF.gff
|
ea94a3dd70
add test to confirm explicit proteins are still loaded
|
6 ani în urmă |
|
small_gene.gff
|
5f4d0f8b6a
Removed additional gap from small_gene.gff since only one gap variable is allowed per gene. Fixed the test to only look for one gap - test public function testGFFImporterAttributeProperty() {completes correctly
|
4 ani în urmă |
|
two_prots.fasta
|
2fa67aeb94
add tests for fasta importer
|
6 ani în urmă |
Risharde Ramnath
cbf205fced
Unit test - parent verification