tripal/tripal_chado/api/tripal_chado.migrate.api.inc

<?php
/**
 * @file
 * Provides an application programming interface (API) to migrate content.
 */

/**
 * @defgroup tripal_chado_migrate_api Chado Entity
 * @ingroup tripal_chado_api
 * @{
 * Provides an application programming interface (API) to migrate content.
 * @}
 */

/**
 * Migrate Tripal content types
 *
 * Migrate specified Tripal content type and publish all its content. The
 * content type will be created if it does not already exist.
 *
 * @param $type
 *   A type array specifying the vocabular, accession, term_name, and chado
 *   data_table e.g.
 *     $type = array(
 *       'vocabulary' => 'OBI',
 *       'accession' => '0100026',
 *       'term_name' => 'organism',
 *       'storage_args' => array (
 *         'data_table' => $table
 *       )
 *     )
 *
 * @ingroup tripal_chado_migrate_api
 */
function chado_migrate_tripal_content_type($type = []) {

  // Check if the term already exists.
  $term = tripal_load_term_entity($type);
  // If term doesn't exist, create a new bundle for this term.
  if (!$term) {
    print("Creating bundle for term '" . $type['term_name'] . "'...\n");
    $success = tripal_create_bundle($type);
    $term = tripal_load_term_entity($type);
  }
  // Create bundle name.
  $bundle_name = 'bio_data_' . $term->id;

  // Publish records for the bundle.
  $value = [
    'sync_node' => 1,
    'bundle_name' => $bundle_name,
  ];
  chado_publish_records($value);
}