| 123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193 | <?php/** * @file * Describe default genetic views *//** * Implements hook_views_default_views(). * * @ingroup tripal_genetic */function tripal_genetic_views_default_views() {  $views = array();  // User View ("Search Biological Content")  // Remember, if you change the name/path of this view,  // you also want to change it's description in tripal_genetic_search_biological_data_views()  $view = tripal_genetic_defaultvalue_user_genotypes();  $view = tripal_make_view_compatible_with_external($view);  $views[$view->name] = $view;  // Admin view  $view = tripal_genetic_defaultviews_admin_genotypes();  $view = tripal_make_view_compatible_with_external($view);  $views[$view->name] = $view;  return $views;}/** * Defines the genetic user search default view. * * @ingroup tripal_genetic */function tripal_genetic_defaultvalue_user_genotypes() {  // As a shortcut, currently I am copying the admin view and then tweaking it  // In thie future this should be replaced by a views export  $view = tripal_genetic_defaultviews_admin_genotypes();  // change some view admin stuff  $view->name = 'tripal_genetic_user_genotypes';  $view->human_name = 'Genotype User Search';  $view->description = 'Allows users to search genotype data';  $view->tag = 'tripal search';  // Change the path  $view->display['page_1']->display_options['path'] = 'chado/genotype';  $view->display['page_1']->display_options['menu'] = array(    'type' => 'normal',    'title' => 'Genotypes',    'description' => 'Genetic variations such as SNPs, MNPs and indels.',    'weight' => '-10'  );  unset($view->display['page_1']->display_options['tab_options']);  // Remove edit/delete node  unset(    $view->display['default']->display_options['fields']['delete_node'],    $view->display['default']->display_options['fields']['edit_node'],    $view->display['default']->display_options['fields']['nothing']  );  // Remove the admin action links  unset($view->display['default']->display_options['header']['action_links_area']);  return $view;}/** * Describes the default administration genetic view * * @ingroup tripal_genetic */function tripal_genetic_defaultviews_admin_genotypes() {  $view = new view();  $view->name = 'tripal_genetic_admin_genetics';  $view->description = 'DO NOT DISABLE';  $view->tag = 'tripal admin';  $view->base_table = 'genotype';  $view->human_name = 'Genotype Admin';  $view->core = 7;  $view->api_version = '3.0';  $view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */  /* Display: Defaults */  $handler = $view->new_display('default', 'Defaults', 'default');  $handler->display->display_options['title'] = 'Genotypes Observed';  $handler->display->display_options['use_more_always'] = FALSE;  $handler->display->display_options['access']['type'] = 'perm';  $handler->display->display_options['cache']['type'] = 'none';  $handler->display->display_options['query']['type'] = 'views_query';  $handler->display->display_options['exposed_form']['type'] = 'input_required';  $handler->display->display_options['exposed_form']['options']['submit_button'] = 'Search';  $handler->display->display_options['exposed_form']['options']['text_input_required'] = 'Click search to see a listing of genotypes that meet the filter requirements. Use the filters to restrict this set to a more reasonable number of genotypes or to find a specific genotype.';  $handler->display->display_options['exposed_form']['options']['text_input_required_format'] = 'full_html';  $handler->display->display_options['pager']['type'] = 'full';  $handler->display->display_options['pager']['options']['items_per_page'] = '25';  $handler->display->display_options['pager']['options']['offset'] = '0';  $handler->display->display_options['pager']['options']['id'] = '0';  $handler->display->display_options['pager']['options']['quantity'] = '9';  $handler->display->display_options['style_plugin'] = 'table';  $handler->display->display_options['style_options']['grouping'] = '';  $handler->display->display_options['style_options']['columns'] = array(    'uniquename' => 'uniquename',    'name' => 'name',    'description' => 'description',  );  $handler->display->display_options['style_options']['default'] = 'uniquename';  $handler->display->display_options['style_options']['info'] = array(    'uniquename' => array(      'sortable' => 1,      'separator' => '',    ),    'name' => array(      'sortable' => 1,      'separator' => '',    ),    'description' => array(      'sortable' => 1,      'separator' => '',    ),  );  /* No results behavior: Global: Text area */  $handler->display->display_options['empty']['text']['id'] = 'area';  $handler->display->display_options['empty']['text']['table'] = 'views';  $handler->display->display_options['empty']['text']['field'] = 'area';  $handler->display->display_options['empty']['text']['content'] = 'No genotypes match the current criteria.';  $handler->display->display_options['empty']['text']['format'] = '2';  /* Field: Chado Genotype: Uniquename */  $handler->display->display_options['fields']['uniquename']['id'] = 'uniquename';  $handler->display->display_options['fields']['uniquename']['table'] = 'genotype';  $handler->display->display_options['fields']['uniquename']['field'] = 'uniquename';  /* Field: Chado Genotype: Name */  $handler->display->display_options['fields']['name']['id'] = 'name';  $handler->display->display_options['fields']['name']['table'] = 'genotype';  $handler->display->display_options['fields']['name']['field'] = 'name';  /* Field: Chado Genotype: Description */  $handler->display->display_options['fields']['description']['id'] = 'description';  $handler->display->display_options['fields']['description']['table'] = 'genotype';  $handler->display->display_options['fields']['description']['field'] = 'description';  /* Sort criterion: Chado Genotype: Id */  $handler->display->display_options['sorts']['genotype_id']['id'] = 'genotype_id';  $handler->display->display_options['sorts']['genotype_id']['table'] = 'genotype';  $handler->display->display_options['sorts']['genotype_id']['field'] = 'genotype_id';  $handler->display->display_options['sorts']['genotype_id']['order'] = 'DESC';  /* Filter criterion: Chado Genotype: Uniquename */  $handler->display->display_options['filters']['uniquename']['id'] = 'uniquename';  $handler->display->display_options['filters']['uniquename']['table'] = 'genotype';  $handler->display->display_options['filters']['uniquename']['field'] = 'uniquename';  $handler->display->display_options['filters']['uniquename']['operator'] = 'contains';  $handler->display->display_options['filters']['uniquename']['group'] = '0';  $handler->display->display_options['filters']['uniquename']['exposed'] = TRUE;  $handler->display->display_options['filters']['uniquename']['expose']['operator_id'] = 'uniquename_op';  $handler->display->display_options['filters']['uniquename']['expose']['label'] = 'Unique Name Contains';  $handler->display->display_options['filters']['uniquename']['expose']['operator'] = 'uniquename_op';  $handler->display->display_options['filters']['uniquename']['expose']['identifier'] = 'uniquename';  $handler->display->display_options['filters']['uniquename']['expose']['remember_roles'] = array(    2 => '2',    1 => 0,    3 => 0,  );  /* Filter criterion: Chado Genotype: Description */  $handler->display->display_options['filters']['description']['id'] = 'description';  $handler->display->display_options['filters']['description']['table'] = 'genotype';  $handler->display->display_options['filters']['description']['field'] = 'description';  $handler->display->display_options['filters']['description']['operator'] = 'contains';  $handler->display->display_options['filters']['description']['group'] = '0';  $handler->display->display_options['filters']['description']['exposed'] = TRUE;  $handler->display->display_options['filters']['description']['expose']['operator_id'] = 'description_op';  $handler->display->display_options['filters']['description']['expose']['label'] = 'Description Contains';  $handler->display->display_options['filters']['description']['expose']['operator'] = 'description_op';  $handler->display->display_options['filters']['description']['expose']['identifier'] = 'description';  $handler->display->display_options['filters']['description']['expose']['remember_roles'] = array(    2 => '2',    1 => 0,    3 => 0,  );  /* Display: Page */  $handler = $view->new_display('page', 'Page', 'page_1');  $handler->display->display_options['path'] = 'admin/tripal/legacy/tripal_genetic/genotypes';  $handler->display->display_options['menu']['type'] = 'default tab';  $handler->display->display_options['menu']['title'] = 'Genotypes';  $handler->display->display_options['menu']['description'] = 'A genotype is defined by a collection of features, mutations, etc.';  $handler->display->display_options['menu']['weight'] = '-10';  $handler->display->display_options['menu']['context'] = 0;  $handler->display->display_options['menu']['context_only_inline'] = 0;  $handler->display->display_options['tab_options']['weight'] = '0';  return $view;}
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