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- <?php
- $phylotree = $variables['node']->phylotree;
- if ($phylotree->type_id->name != "taxonomy" and $phylotree->has_nodes) {
- if ($phylotree->type_id and $phylotree->type_id->name == 'polypeptide') { ?>
- <p>Phylogenies are essential to any analysis of evolutionary gene
- sequences collected across a group of organisms. A <b>phylogram</b>
- is a phylogenetic tree that has branch spans proportional to the
- amount of character change.
- </p> <?php
- } ?>
- <div id="phylogram">
- <!-- d3js will add svg to this div, and remove the loader gif prefix with / for absolute url -->
- <img src="/<?php print drupal_get_path('module', 'tripal_phylogeny') ?>/theme/images/ajax-loader.gif" class="phylogram-ajax-loader"/>
- </div>
- <div id="phylonode_popup_dialog" style="display: none;">
- <!-- these links are for leaf nodes only -->
- <div><a id="phylonode_feature_link" href="" tabindex="-1"></a></div>
- <div><a id="phylonode_gene_linkout" href="" tabindex="-1"></a></div>
- <div><a id="phylonode_context_search_link" href="" tabindex="-1"></a></div>
- <div><a id="phylonode_organism_link" href="" tabindex="-1"></a></div>
- <!-- these links are for interior nodes only -->
- <div><a id="phylonode_go_link" href="?block=phylotree_go" class="tripal_toc_list_item_link" tabindex="-1">
- View Gene Ontology</a></div>
- <!-- removed tripal_toc_list_item_link from context link, at least while it is a link off the site -->
- <div><a id="phylonode_context_link" href="?block=phylotree_context" class="" tabindex="-1">
- View Context</a></div>
- </div> <?php
- }
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