zhxd2/tripal @ a1e80c5feff7f978b1bcd87d1fa5fc6c21c567bd

Sen descrición

Stephen Ficklin a1e80c5fef Fixed issue #2347931		%!s(int64=9) %!d(string=hai) anos
docs	8a898014b8 Renamed branch from 7.x-1.x to 7.x-2.x. Also merged bug fixes from 6.x-1.x	%!s(int64=11) %!d(string=hai) anos
tripal_analysis	0d02183154 Merge branch '7.x-2.x' of git.drupal.org:project/tripal into 7.x-2.x	%!s(int64=9) %!d(string=hai) anos
tripal_bulk_loader	a70f34bb3e Fixed bug in new bulk loader export/import code	%!s(int64=9) %!d(string=hai) anos
tripal_contact	baac0be178 Issue #2463211: Set all administrative views to require input. This ensures that the page won't WSOD if there are too many records in the particular table. NOTE: this was a problem due to speed bottlenecks such as the drop-down filters and sorting of the results.	%!s(int64=9) %!d(string=hai) anos
tripal_core	a1e80c5fef Fixed issue #2347931	%!s(int64=9) %!d(string=hai) anos
tripal_cv	baac0be178 Issue #2463211: Set all administrative views to require input. This ensures that the page won't WSOD if there are too many records in the particular table. NOTE: this was a problem due to speed bottlenecks such as the drop-down filters and sorting of the results.	%!s(int64=9) %!d(string=hai) anos
tripal_db	baac0be178 Issue #2463211: Set all administrative views to require input. This ensures that the page won't WSOD if there are too many records in the particular table. NOTE: this was a problem due to speed bottlenecks such as the drop-down filters and sorting of the results.	%!s(int64=9) %!d(string=hai) anos
tripal_example	9cab666d85 Fixed error in example module	%!s(int64=9) %!d(string=hai) anos
tripal_feature	0d02183154 Merge branch '7.x-2.x' of git.drupal.org:project/tripal into 7.x-2.x	%!s(int64=9) %!d(string=hai) anos
tripal_featuremap	baac0be178 Issue #2463211: Set all administrative views to require input. This ensures that the page won't WSOD if there are too many records in the particular table. NOTE: this was a problem due to speed bottlenecks such as the drop-down filters and sorting of the results.	%!s(int64=9) %!d(string=hai) anos
tripal_genetic	baac0be178 Issue #2463211: Set all administrative views to require input. This ensures that the page won't WSOD if there are too many records in the particular table. NOTE: this was a problem due to speed bottlenecks such as the drop-down filters and sorting of the results.	%!s(int64=9) %!d(string=hai) anos
tripal_library	baac0be178 Issue #2463211: Set all administrative views to require input. This ensures that the page won't WSOD if there are too many records in the particular table. NOTE: this was a problem due to speed bottlenecks such as the drop-down filters and sorting of the results.	%!s(int64=9) %!d(string=hai) anos
tripal_natural_diversity	baac0be178 Issue #2463211: Set all administrative views to require input. This ensures that the page won't WSOD if there are too many records in the particular table. NOTE: this was a problem due to speed bottlenecks such as the drop-down filters and sorting of the results.	%!s(int64=9) %!d(string=hai) anos
tripal_organism	0d02183154 Merge branch '7.x-2.x' of git.drupal.org:project/tripal into 7.x-2.x	%!s(int64=9) %!d(string=hai) anos
tripal_phenotype	baac0be178 Issue #2463211: Set all administrative views to require input. This ensures that the page won't WSOD if there are too many records in the particular table. NOTE: this was a problem due to speed bottlenecks such as the drop-down filters and sorting of the results.	%!s(int64=9) %!d(string=hai) anos
tripal_project	baac0be178 Issue #2463211: Set all administrative views to require input. This ensures that the page won't WSOD if there are too many records in the particular table. NOTE: this was a problem due to speed bottlenecks such as the drop-down filters and sorting of the results.	%!s(int64=9) %!d(string=hai) anos
tripal_pub	baac0be178 Issue #2463211: Set all administrative views to require input. This ensures that the page won't WSOD if there are too many records in the particular table. NOTE: this was a problem due to speed bottlenecks such as the drop-down filters and sorting of the results.	%!s(int64=9) %!d(string=hai) anos
tripal_stock	baac0be178 Issue #2463211: Set all administrative views to require input. This ensures that the page won't WSOD if there are too many records in the particular table. NOTE: this was a problem due to speed bottlenecks such as the drop-down filters and sorting of the results.	%!s(int64=9) %!d(string=hai) anos
tripal_views	faa9546d67 Views Integration (Issue #2479599): Additional Ramifications since the unset mview_id was used to detect legacy mviews repeatedly, there needed to be fixes in the hook_views_data() and views integration UI	%!s(int64=9) %!d(string=hai) anos
README.txt	8a898014b8 Renamed branch from 7.x-1.x to 7.x-2.x. Also merged bug fixes from 6.x-1.x	%!s(int64=11) %!d(string=hai) anos

		
			
			
				README.txt
			
		
		
	
			
				What is Tripal?
--------------
Tripal is a collection of open-source freely available Drupal modules 
and is a member of the GMOD family of tools. Tripal serves as a web 
interface for the GMOD Chado database and is designed to allow anyone 
with genomic data to quickly create an online genomic database using 
community supported tools.


Features
--------------
 - a Chado installer
 - Data loaders for ontologies (controlled vocabularies), GFF files, 
   and FASTA files
 - Generic Data Loader Modules allows for creation of custom loading 
   templates
 - Drupal nodes (web pages) are automatically generated for organisms,
   genomic features, biological libraries, and stocks
 - Web pages can be enriched with analysis results from BLAST, 
   KAAS/KEGG, InterProScan, and Gene Ontology (GO)
 - Views Integration allows for custom listings of data
 - Content pieces exposed as blocks allowing the use of Panels for 
   custom layouts of Tripal Nodes


Required Modules
--------------
 - Drupal 6.x (work is currently underway for a 7.x compatible 
   version)
 - Drupal Core Modules: Search and Path
 - Database containing GMOD Chado Schema (can be installed by the 
   Tripal Core module)
NOTE: A PostgreSQL database is required for installation of the 
Chado Schema

Highly Recommended Modules
 - Views 2.x (Views 3.x compatible version already exists in 6.x-0.4-dev)
 - Views Data Export


Installation
--------------
Please follow the online tutorial for installation instructions:
http://www.gmod.org/wiki/Tripal_Tutorial_v1.1


Customization
--------------
Tripal can be used “as is” but also allows for complete customization.
PHP-based template files are provided for all data types to allow for 
precise customizations as required by the community. A well-developed 
Tripal API provides a uniform set of variables and functions for 
accessing any and all data within the Chado database.


Future Work
--------------
Currently, Tripal only supports a large subset of the 
current Chado schema, but further development is underway. Meanwhile, 
others can use the Tripal API to develop their own extensions. Those 
extensions can in turn be made available for anyone to use. These 
custom extensions, the Tripal package, and access to support resource 
such as an active mailing list can be found on the Tripal website 
(http://tripal.sourceforge.net).

For more information, see the recent publication:

Stephen P. Ficklin, Lacey-Anne Sanderson, Chun-Huai Cheng, Margaret 
Staton, Taein Lee, Il-Hyung Cho, Sook Jung, Kirstin E Bett, Dorrie 
Main. Tripal: a construction Toolkit for Online Genome Databases. 
Database, Sept 2011. Vol 2011. 

			
		