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tripal
Abdullah Almsaeed a6c0e4d912 Fix execute link variable vor 8 Jahren
docs 8a898014b8 Renamed branch from 7.x-1.x to 7.x-2.x. Also merged bug fixes from 6.x-1.x vor 11 Jahren
tripal_analysis 5cd756da7f Update tripal_analysis.chado_node.inc vor 8 Jahren
tripal_bulk_loader 5d9d10d9c4 General improvements vor 8 Jahren
tripal_contact 10ad767e71 Updated versions for anticipated stable release vor 8 Jahren
tripal_core a6c0e4d912 Fix execute link variable vor 8 Jahren
tripal_cv d3cb449f5c Bug fix in chado_select_record() and some in-line document changes vor 8 Jahren
tripal_db d3cb449f5c Bug fix in chado_select_record() and some in-line document changes vor 8 Jahren
tripal_example 10ad767e71 Updated versions for anticipated stable release vor 8 Jahren
tripal_feature 56fa9a3446 warnings, typos, small cleanup vor 8 Jahren
tripal_featuremap 10ad767e71 Updated versions for anticipated stable release vor 8 Jahren
tripal_genetic 10ad767e71 Updated versions for anticipated stable release vor 8 Jahren
tripal_library ffe19370a3 Fixed a warning vor 8 Jahren
tripal_natural_diversity 10ad767e71 Updated versions for anticipated stable release vor 8 Jahren
tripal_organism 10ad767e71 Updated versions for anticipated stable release vor 8 Jahren
tripal_phenotype 10ad767e71 Updated versions for anticipated stable release vor 8 Jahren
tripal_phylogeny e64575d83a Improved the taxanomy page vor 8 Jahren
tripal_project 10ad767e71 Updated versions for anticipated stable release vor 8 Jahren
tripal_pub e8e4a8dca7 Added informative message to AGL importer failure vor 8 Jahren
tripal_stock 10ad767e71 Updated versions for anticipated stable release vor 8 Jahren
tripal_views 8ca88432d1 Merge pull request #15 from njbooher/play-nice-with-other-modules-views vor 8 Jahren
LICENSE.txt 19710e02b6 Changed name of liscence to ensure it is overwritten by Drupal. vor 8 Jahren
README.txt 9e3d41c32e Update README.txt vor 9 Jahren

README.txt

What is Tripal?
--------------
Tripal is a collection of open-source freely available Drupal modules
and is a member of the GMOD family of tools. Tripal serves as a web
interface for the GMOD Chado database and is designed to reduce the
time and cost required for construction of an online genomic, genetic
and breeding database.


Features
--------------
- a Chado installer
- Data loaders for ontologies (controlled vocabularies), GFF files,
and FASTA files, publications (from PubMed and AGIRCOLA).
- Generic Bulk Data Loader Modules allows for creation of custom
loading templates.
- Drupal nodes (web pages) are automatically generated for organisms,
genomic features, biological libraries, and stocks
- Supports creation of materialized views for faster data queries.
- Display templates are provided for all content types for
easier customization.
- Views Integration allows for custom listings of data
- Content pieces exposed as blocks allowing the use of Panels for
custom layouts of Tripal Nodes


Required Modules
--------------
- Drupal 7.x
- Drupal Core Modules: Search, Path and PHP modules.
- Drupal contributed modules: Views
- Database containing GMOD Chado Schema (can be installed by the
Tripal Core module)
NOTE: A PostgreSQL database is required for installation of the
Chado Schema

Installation
--------------
Please follow the instructions in the online Tripal User's Guide:
http://tripal.info/tutorials/v2.0/installation

Customization
--------------
Tripal can be used “as is” but also allows for complete customization.
PHP-based template files are provided for all data types to allow for
precise customizations as required by the community. A well-developed
Tripal API provides a uniform set of variables and functions for
accessing any and all data within the Chado database.