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- set search_path=public,so,frange,genetic_code;
- DROP FUNCTION IF EXISTS gfffeatureatts(integer);
- DROP VIEW IF EXISTS db_dbxref_count CASCADE;
- DROP VIEW IF EXISTS stats_paths_to_root CASCADE;
- DROP VIEW IF EXISTS cv_root CASCADE;
- DROP VIEW IF EXISTS cv_leaf CASCADE;
- DROP VIEW IF EXISTS common_ancestor_cvterm CASCADE;
- DROP VIEW IF EXISTS common_descendant_cvterm CASCADE;
- DROP VIEW IF EXISTS cv_cvterm_count CASCADE;
- DROP VIEW IF EXISTS cv_cvterm_count_with_obs CASCADE;
- DROP VIEW IF EXISTS cv_link_count CASCADE;
- DROP VIEW IF EXISTS cv_path_count CASCADE;
- DROP VIEW IF EXISTS type_feature_count CASCADE;
- DROP VIEW IF EXISTS region CASCADE;
- DROP VIEW IF EXISTS sequence_secondary_structure CASCADE;
- DROP VIEW IF EXISTS g_quartet CASCADE;
- DROP VIEW IF EXISTS interior_coding_exon CASCADE;
- DROP VIEW IF EXISTS satellite_dna CASCADE;
- DROP VIEW IF EXISTS pcr_product CASCADE;
- DROP VIEW IF EXISTS read_pair CASCADE;
- DROP VIEW IF EXISTS protein_coding CASCADE;
- DROP VIEW IF EXISTS non_protein_coding CASCADE;
- DROP VIEW IF EXISTS scrna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS scrna CASCADE;
- DROP VIEW IF EXISTS inr_motif CASCADE;
- DROP VIEW IF EXISTS dpe_motif CASCADE;
- DROP VIEW IF EXISTS breu_motif CASCADE;
- DROP VIEW IF EXISTS pse_motif CASCADE;
- DROP VIEW IF EXISTS linkage_group CASCADE;
- DROP VIEW IF EXISTS rna_internal_loop CASCADE;
- DROP VIEW IF EXISTS asymmetric_rna_internal_loop CASCADE;
- DROP VIEW IF EXISTS a_minor_rna_motif CASCADE;
- DROP VIEW IF EXISTS k_turn_rna_motif CASCADE;
- DROP VIEW IF EXISTS sarcin_like_rna_motif CASCADE;
- DROP VIEW IF EXISTS symmetric_rna_internal_loop CASCADE;
- DROP VIEW IF EXISTS rna_junction_loop CASCADE;
- DROP VIEW IF EXISTS rna_hook_turn CASCADE;
- DROP VIEW IF EXISTS base_pair CASCADE;
- DROP VIEW IF EXISTS wc_base_pair CASCADE;
- DROP VIEW IF EXISTS sugar_edge_base_pair CASCADE;
- DROP VIEW IF EXISTS aptamer CASCADE;
- DROP VIEW IF EXISTS dna_aptamer CASCADE;
- DROP VIEW IF EXISTS rna_aptamer CASCADE;
- DROP VIEW IF EXISTS morpholino_oligo CASCADE;
- DROP VIEW IF EXISTS riboswitch CASCADE;
- DROP VIEW IF EXISTS matrix_attachment_site CASCADE;
- DROP VIEW IF EXISTS locus_control_region CASCADE;
- DROP VIEW IF EXISTS match_part CASCADE;
- DROP VIEW IF EXISTS genomic_clone CASCADE;
- DROP VIEW IF EXISTS processed_pseudogene CASCADE;
- DROP VIEW IF EXISTS pseudogene_by_unequal_crossing_over CASCADE;
- DROP VIEW IF EXISTS probe CASCADE;
- DROP VIEW IF EXISTS aneuploid CASCADE;
- DROP VIEW IF EXISTS hyperploid CASCADE;
- DROP VIEW IF EXISTS hypoploid CASCADE;
- DROP VIEW IF EXISTS operator CASCADE;
- DROP VIEW IF EXISTS nuclease_binding_site CASCADE;
- DROP VIEW IF EXISTS compound_chromosome_arm CASCADE;
- DROP VIEW IF EXISTS restriction_enzyme_binding_site CASCADE;
- DROP VIEW IF EXISTS d_intrachr_transposition CASCADE;
- DROP VIEW IF EXISTS d_interchr_transposition CASCADE;
- DROP VIEW IF EXISTS free_chromosome_arm CASCADE;
- DROP VIEW IF EXISTS gene_to_gene_feature CASCADE;
- DROP VIEW IF EXISTS overlapping CASCADE;
- DROP VIEW IF EXISTS inside_intron CASCADE;
- DROP VIEW IF EXISTS inside_intron_antiparallel CASCADE;
- DROP VIEW IF EXISTS inside_intron_parallel CASCADE;
- DROP VIEW IF EXISTS five_prime_three_prime_overlap CASCADE;
- DROP VIEW IF EXISTS five_prime_five_prime_overlap CASCADE;
- DROP VIEW IF EXISTS three_prime_three_prime_overlap CASCADE;
- DROP VIEW IF EXISTS three_prime_five_prime_overlap CASCADE;
- DROP VIEW IF EXISTS antisense CASCADE;
- DROP VIEW IF EXISTS polycistronic_transcript CASCADE;
- DROP VIEW IF EXISTS dicistronic_transcript CASCADE;
- DROP VIEW IF EXISTS operon_member CASCADE;
- DROP VIEW IF EXISTS gene_array_member CASCADE;
- DROP VIEW IF EXISTS macronuclear_sequence CASCADE;
- DROP VIEW IF EXISTS micronuclear_sequence CASCADE;
- DROP VIEW IF EXISTS nuclear_gene CASCADE;
- DROP VIEW IF EXISTS mt_gene CASCADE;
- DROP VIEW IF EXISTS kinetoplast_gene CASCADE;
- DROP VIEW IF EXISTS plastid_gene CASCADE;
- DROP VIEW IF EXISTS apicoplast_gene CASCADE;
- DROP VIEW IF EXISTS ct_gene CASCADE;
- DROP VIEW IF EXISTS chromoplast_gene CASCADE;
- DROP VIEW IF EXISTS cyanelle_gene CASCADE;
- DROP VIEW IF EXISTS leucoplast_gene CASCADE;
- DROP VIEW IF EXISTS proplastid_gene CASCADE;
- DROP VIEW IF EXISTS nucleomorph_gene CASCADE;
- DROP VIEW IF EXISTS plasmid_gene CASCADE;
- DROP VIEW IF EXISTS proviral_gene CASCADE;
- DROP VIEW IF EXISTS endogenous_retroviral_gene CASCADE;
- DROP VIEW IF EXISTS transposable_element CASCADE;
- DROP VIEW IF EXISTS expressed_sequence_match CASCADE;
- DROP VIEW IF EXISTS clone_insert_end CASCADE;
- DROP VIEW IF EXISTS polypeptide CASCADE;
- DROP VIEW IF EXISTS chromosome_arm CASCADE;
- DROP VIEW IF EXISTS sequencing_primer CASCADE;
- DROP VIEW IF EXISTS mrna_with_frameshift CASCADE;
- DROP VIEW IF EXISTS sequence_feature CASCADE;
- DROP VIEW IF EXISTS transposable_element_gene CASCADE;
- DROP VIEW IF EXISTS primer CASCADE;
- DROP VIEW IF EXISTS proviral_region CASCADE;
- DROP VIEW IF EXISTS methylated_c CASCADE;
- DROP VIEW IF EXISTS edited CASCADE;
- DROP VIEW IF EXISTS transcript_with_translational_frameshift CASCADE;
- DROP VIEW IF EXISTS regulated CASCADE;
- DROP VIEW IF EXISTS protein_coding_primary_transcript CASCADE;
- DROP VIEW IF EXISTS forward_primer CASCADE;
- DROP VIEW IF EXISTS rna_sequence_secondary_structure CASCADE;
- DROP VIEW IF EXISTS transcriptionally_regulated CASCADE;
- DROP VIEW IF EXISTS transcriptionally_constitutive CASCADE;
- DROP VIEW IF EXISTS transcriptionally_induced CASCADE;
- DROP VIEW IF EXISTS transcriptionally_repressed CASCADE;
- DROP VIEW IF EXISTS silenced_gene CASCADE;
- DROP VIEW IF EXISTS gene_silenced_by_dna_modification CASCADE;
- DROP VIEW IF EXISTS gene_silenced_by_dna_methylation CASCADE;
- DROP VIEW IF EXISTS post_translationally_regulated CASCADE;
- DROP VIEW IF EXISTS translationally_regulated CASCADE;
- DROP VIEW IF EXISTS reverse_primer CASCADE;
- DROP VIEW IF EXISTS epigenetically_modified CASCADE;
- DROP VIEW IF EXISTS imprinted CASCADE;
- DROP VIEW IF EXISTS maternally_imprinted CASCADE;
- DROP VIEW IF EXISTS paternally_imprinted CASCADE;
- DROP VIEW IF EXISTS allelically_excluded CASCADE;
- DROP VIEW IF EXISTS gene_rearranged_at_dna_level CASCADE;
- DROP VIEW IF EXISTS ribosome_entry_site CASCADE;
- DROP VIEW IF EXISTS attenuator CASCADE;
- DROP VIEW IF EXISTS terminator CASCADE;
- DROP VIEW IF EXISTS dna_sequence_secondary_structure CASCADE;
- DROP VIEW IF EXISTS assembly_component CASCADE;
- DROP VIEW IF EXISTS recoded_codon CASCADE;
- DROP VIEW IF EXISTS capped CASCADE;
- DROP VIEW IF EXISTS exon CASCADE;
- DROP VIEW IF EXISTS supercontig CASCADE;
- DROP VIEW IF EXISTS contig CASCADE;
- DROP VIEW IF EXISTS read CASCADE;
- DROP VIEW IF EXISTS clone CASCADE;
- DROP VIEW IF EXISTS yac CASCADE;
- DROP VIEW IF EXISTS bac CASCADE;
- DROP VIEW IF EXISTS pac CASCADE;
- DROP VIEW IF EXISTS plasmid CASCADE;
- DROP VIEW IF EXISTS cosmid CASCADE;
- DROP VIEW IF EXISTS phagemid CASCADE;
- DROP VIEW IF EXISTS fosmid CASCADE;
- DROP VIEW IF EXISTS deletion CASCADE;
- DROP VIEW IF EXISTS methylated_a CASCADE;
- DROP VIEW IF EXISTS splice_site CASCADE;
- DROP VIEW IF EXISTS five_prime_cis_splice_site CASCADE;
- DROP VIEW IF EXISTS three_prime_cis_splice_site CASCADE;
- DROP VIEW IF EXISTS enhancer CASCADE;
- DROP VIEW IF EXISTS enhancer_bound_by_factor CASCADE;
- DROP VIEW IF EXISTS promoter CASCADE;
- DROP VIEW IF EXISTS rnapol_i_promoter CASCADE;
- DROP VIEW IF EXISTS rnapol_ii_promoter CASCADE;
- DROP VIEW IF EXISTS rnapol_iii_promoter CASCADE;
- DROP VIEW IF EXISTS caat_signal CASCADE;
- DROP VIEW IF EXISTS gc_rich_promoter_region CASCADE;
- DROP VIEW IF EXISTS tata_box CASCADE;
- DROP VIEW IF EXISTS minus_10_signal CASCADE;
- DROP VIEW IF EXISTS minus_35_signal CASCADE;
- DROP VIEW IF EXISTS cross_genome_match CASCADE;
- DROP VIEW IF EXISTS operon CASCADE;
- DROP VIEW IF EXISTS clone_insert_start CASCADE;
- DROP VIEW IF EXISTS retrotransposon CASCADE;
- DROP VIEW IF EXISTS translated_nucleotide_match CASCADE;
- DROP VIEW IF EXISTS dna_transposon CASCADE;
- DROP VIEW IF EXISTS non_transcribed_region CASCADE;
- DROP VIEW IF EXISTS u2_intron CASCADE;
- DROP VIEW IF EXISTS primary_transcript CASCADE;
- DROP VIEW IF EXISTS ltr_retrotransposon CASCADE;
- DROP VIEW IF EXISTS intron CASCADE;
- DROP VIEW IF EXISTS non_ltr_retrotransposon CASCADE;
- DROP VIEW IF EXISTS five_prime_intron CASCADE;
- DROP VIEW IF EXISTS interior_intron CASCADE;
- DROP VIEW IF EXISTS three_prime_intron CASCADE;
- DROP VIEW IF EXISTS rflp_fragment CASCADE;
- DROP VIEW IF EXISTS line_element CASCADE;
- DROP VIEW IF EXISTS coding_exon CASCADE;
- DROP VIEW IF EXISTS five_prime_coding_exon_coding_region CASCADE;
- DROP VIEW IF EXISTS three_prime_coding_exon_coding_region CASCADE;
- DROP VIEW IF EXISTS noncoding_exon CASCADE;
- DROP VIEW IF EXISTS translocation CASCADE;
- DROP VIEW IF EXISTS five_prime_coding_exon CASCADE;
- DROP VIEW IF EXISTS interior_exon CASCADE;
- DROP VIEW IF EXISTS three_prime_coding_exon CASCADE;
- DROP VIEW IF EXISTS utr CASCADE;
- DROP VIEW IF EXISTS five_prime_utr CASCADE;
- DROP VIEW IF EXISTS three_prime_utr CASCADE;
- DROP VIEW IF EXISTS sine_element CASCADE;
- DROP VIEW IF EXISTS simple_sequence_length_variation CASCADE;
- DROP VIEW IF EXISTS terminal_inverted_repeat_element CASCADE;
- DROP VIEW IF EXISTS rrna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS alanine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS arg_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS asparagine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS aspartic_acid_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS cysteine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS glutamic_acid_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS glutamine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS glycine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS histidine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS isoleucine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS leucine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS lysine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS methionine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS phe_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS proline_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS serine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS thr_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS try_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS tyrosine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS valine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS snrna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS snorna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS mature_transcript CASCADE;
- DROP VIEW IF EXISTS protein_coding_gene CASCADE;
- DROP VIEW IF EXISTS mrna CASCADE;
- DROP VIEW IF EXISTS tf_binding_site CASCADE;
- DROP VIEW IF EXISTS orf CASCADE;
- DROP VIEW IF EXISTS transcript_attribute CASCADE;
- DROP VIEW IF EXISTS foldback_element CASCADE;
- DROP VIEW IF EXISTS flanking_region CASCADE;
- DROP VIEW IF EXISTS chromosome_variation CASCADE;
- DROP VIEW IF EXISTS internal_utr CASCADE;
- DROP VIEW IF EXISTS untranslated_region_polycistronic_mrna CASCADE;
- DROP VIEW IF EXISTS internal_ribosome_entry_site CASCADE;
- DROP VIEW IF EXISTS polyadenylated CASCADE;
- DROP VIEW IF EXISTS sequence_length_variation CASCADE;
- DROP VIEW IF EXISTS modified_rna_base_feature CASCADE;
- DROP VIEW IF EXISTS rrna CASCADE;
- DROP VIEW IF EXISTS trna CASCADE;
- DROP VIEW IF EXISTS alanyl_trna CASCADE;
- DROP VIEW IF EXISTS rrna_small_subunit_primary_transcript CASCADE;
- DROP VIEW IF EXISTS asparaginyl_trna CASCADE;
- DROP VIEW IF EXISTS aspartyl_trna CASCADE;
- DROP VIEW IF EXISTS cysteinyl_trna CASCADE;
- DROP VIEW IF EXISTS glutaminyl_trna CASCADE;
- DROP VIEW IF EXISTS glutamyl_trna CASCADE;
- DROP VIEW IF EXISTS glycyl_trna CASCADE;
- DROP VIEW IF EXISTS histidyl_trna CASCADE;
- DROP VIEW IF EXISTS isoleucyl_trna CASCADE;
- DROP VIEW IF EXISTS leucyl_trna CASCADE;
- DROP VIEW IF EXISTS lysyl_trna CASCADE;
- DROP VIEW IF EXISTS methionyl_trna CASCADE;
- DROP VIEW IF EXISTS phenylalanyl_trna CASCADE;
- DROP VIEW IF EXISTS prolyl_trna CASCADE;
- DROP VIEW IF EXISTS seryl_trna CASCADE;
- DROP VIEW IF EXISTS threonyl_trna CASCADE;
- DROP VIEW IF EXISTS tryptophanyl_trna CASCADE;
- DROP VIEW IF EXISTS tyrosyl_trna CASCADE;
- DROP VIEW IF EXISTS valyl_trna CASCADE;
- DROP VIEW IF EXISTS snrna CASCADE;
- DROP VIEW IF EXISTS snorna CASCADE;
- DROP VIEW IF EXISTS mirna CASCADE;
- DROP VIEW IF EXISTS bound_by_factor CASCADE;
- DROP VIEW IF EXISTS transcript_bound_by_nucleic_acid CASCADE;
- DROP VIEW IF EXISTS transcript_bound_by_protein CASCADE;
- DROP VIEW IF EXISTS engineered_gene CASCADE;
- DROP VIEW IF EXISTS engineered_foreign_gene CASCADE;
- DROP VIEW IF EXISTS mrna_with_minus_1_frameshift CASCADE;
- DROP VIEW IF EXISTS engineered_foreign_transposable_element_gene CASCADE;
- DROP VIEW IF EXISTS foreign_gene CASCADE;
- DROP VIEW IF EXISTS long_terminal_repeat CASCADE;
- DROP VIEW IF EXISTS fusion_gene CASCADE;
- DROP VIEW IF EXISTS engineered_fusion_gene CASCADE;
- DROP VIEW IF EXISTS microsatellite CASCADE;
- DROP VIEW IF EXISTS dinucleotide_repeat_microsatellite_feature CASCADE;
- DROP VIEW IF EXISTS trinuc_repeat_microsat CASCADE;
- DROP VIEW IF EXISTS engineered_foreign_repetitive_element CASCADE;
- DROP VIEW IF EXISTS inverted_repeat CASCADE;
- DROP VIEW IF EXISTS u12_intron CASCADE;
- DROP VIEW IF EXISTS origin_of_replication CASCADE;
- DROP VIEW IF EXISTS d_loop CASCADE;
- DROP VIEW IF EXISTS recombination_feature CASCADE;
- DROP VIEW IF EXISTS specific_recombination_site CASCADE;
- DROP VIEW IF EXISTS recombination_feature_of_rearranged_gene CASCADE;
- DROP VIEW IF EXISTS vertebrate_immune_system_gene_recombination_feature CASCADE;
- DROP VIEW IF EXISTS j_gene_recombination_feature CASCADE;
- DROP VIEW IF EXISTS clip CASCADE;
- DROP VIEW IF EXISTS modified_base CASCADE;
- DROP VIEW IF EXISTS methylated_base_feature CASCADE;
- DROP VIEW IF EXISTS cpg_island CASCADE;
- DROP VIEW IF EXISTS experimentally_determined CASCADE;
- DROP VIEW IF EXISTS stem_loop CASCADE;
- DROP VIEW IF EXISTS direct_repeat CASCADE;
- DROP VIEW IF EXISTS tss CASCADE;
- DROP VIEW IF EXISTS cds CASCADE;
- DROP VIEW IF EXISTS cdna_clone CASCADE;
- DROP VIEW IF EXISTS start_codon CASCADE;
- DROP VIEW IF EXISTS stop_codon CASCADE;
- DROP VIEW IF EXISTS intronic_splice_enhancer CASCADE;
- DROP VIEW IF EXISTS mrna_with_plus_1_frameshift CASCADE;
- DROP VIEW IF EXISTS nuclease_hypersensitive_site CASCADE;
- DROP VIEW IF EXISTS coding_start CASCADE;
- DROP VIEW IF EXISTS tag CASCADE;
- DROP VIEW IF EXISTS rrna_large_subunit_primary_transcript CASCADE;
- DROP VIEW IF EXISTS sage_tag CASCADE;
- DROP VIEW IF EXISTS coding_end CASCADE;
- DROP VIEW IF EXISTS microarray_oligo CASCADE;
- DROP VIEW IF EXISTS mrna_with_plus_2_frameshift CASCADE;
- DROP VIEW IF EXISTS conserved_region CASCADE;
- DROP VIEW IF EXISTS sts CASCADE;
- DROP VIEW IF EXISTS coding_conserved_region CASCADE;
- DROP VIEW IF EXISTS exon_junction CASCADE;
- DROP VIEW IF EXISTS nc_conserved_region CASCADE;
- DROP VIEW IF EXISTS mrna_with_minus_2_frameshift CASCADE;
- DROP VIEW IF EXISTS pseudogene CASCADE;
- DROP VIEW IF EXISTS rnai_reagent CASCADE;
- DROP VIEW IF EXISTS mite CASCADE;
- DROP VIEW IF EXISTS recombination_hotspot CASCADE;
- DROP VIEW IF EXISTS chromosome CASCADE;
- DROP VIEW IF EXISTS chromosome_band CASCADE;
- DROP VIEW IF EXISTS site_specific_recombination_target_region CASCADE;
- DROP VIEW IF EXISTS match CASCADE;
- DROP VIEW IF EXISTS splice_enhancer CASCADE;
- DROP VIEW IF EXISTS est CASCADE;
- DROP VIEW IF EXISTS loxp_site CASCADE;
- DROP VIEW IF EXISTS nucleotide_match CASCADE;
- DROP VIEW IF EXISTS nucleic_acid CASCADE;
- DROP VIEW IF EXISTS protein_match CASCADE;
- DROP VIEW IF EXISTS frt_site CASCADE;
- DROP VIEW IF EXISTS synthetic_sequence CASCADE;
- DROP VIEW IF EXISTS dna CASCADE;
- DROP VIEW IF EXISTS sequence_assembly CASCADE;
- DROP VIEW IF EXISTS group_1_intron_homing_endonuclease_target_region CASCADE;
- DROP VIEW IF EXISTS haplotype_block CASCADE;
- DROP VIEW IF EXISTS rna CASCADE;
- DROP VIEW IF EXISTS flanked CASCADE;
- DROP VIEW IF EXISTS floxed CASCADE;
- DROP VIEW IF EXISTS codon CASCADE;
- DROP VIEW IF EXISTS frt_flanked CASCADE;
- DROP VIEW IF EXISTS invalidated_by_chimeric_cdna CASCADE;
- DROP VIEW IF EXISTS floxed_gene CASCADE;
- DROP VIEW IF EXISTS transposable_element_flanking_region CASCADE;
- DROP VIEW IF EXISTS integron CASCADE;
- DROP VIEW IF EXISTS insertion_site CASCADE;
- DROP VIEW IF EXISTS atti_site CASCADE;
- DROP VIEW IF EXISTS transposable_element_insertion_site CASCADE;
- DROP VIEW IF EXISTS small_regulatory_ncrna CASCADE;
- DROP VIEW IF EXISTS conjugative_transposon CASCADE;
- DROP VIEW IF EXISTS enzymatic_rna CASCADE;
- DROP VIEW IF EXISTS recombinationally_inverted_gene CASCADE;
- DROP VIEW IF EXISTS ribozyme CASCADE;
- DROP VIEW IF EXISTS rrna_5_8s CASCADE;
- DROP VIEW IF EXISTS rna_6s CASCADE;
- DROP VIEW IF EXISTS csrb_rsmb_rna CASCADE;
- DROP VIEW IF EXISTS dsra_rna CASCADE;
- DROP VIEW IF EXISTS gcvb_rna CASCADE;
- DROP VIEW IF EXISTS hammerhead_ribozyme CASCADE;
- DROP VIEW IF EXISTS group_iia_intron CASCADE;
- DROP VIEW IF EXISTS group_iib_intron CASCADE;
- DROP VIEW IF EXISTS micf_rna CASCADE;
- DROP VIEW IF EXISTS oxys_rna CASCADE;
- DROP VIEW IF EXISTS rnase_mrp_rna CASCADE;
- DROP VIEW IF EXISTS rnase_p_rna CASCADE;
- DROP VIEW IF EXISTS rpra_rna CASCADE;
- DROP VIEW IF EXISTS rre_rna CASCADE;
- DROP VIEW IF EXISTS spot_42_rna CASCADE;
- DROP VIEW IF EXISTS telomerase_rna CASCADE;
- DROP VIEW IF EXISTS u1_snrna CASCADE;
- DROP VIEW IF EXISTS u2_snrna CASCADE;
- DROP VIEW IF EXISTS u4_snrna CASCADE;
- DROP VIEW IF EXISTS u4atac_snrna CASCADE;
- DROP VIEW IF EXISTS u5_snrna CASCADE;
- DROP VIEW IF EXISTS u6_snrna CASCADE;
- DROP VIEW IF EXISTS u6atac_snrna CASCADE;
- DROP VIEW IF EXISTS u11_snrna CASCADE;
- DROP VIEW IF EXISTS u12_snrna CASCADE;
- DROP VIEW IF EXISTS sequence_attribute CASCADE;
- DROP VIEW IF EXISTS gene_attribute CASCADE;
- DROP VIEW IF EXISTS u14_snorna CASCADE;
- DROP VIEW IF EXISTS vault_rna CASCADE;
- DROP VIEW IF EXISTS y_rna CASCADE;
- DROP VIEW IF EXISTS twintron CASCADE;
- DROP VIEW IF EXISTS rrna_18s CASCADE;
- DROP VIEW IF EXISTS binding_site CASCADE;
- DROP VIEW IF EXISTS protein_binding_site CASCADE;
- DROP VIEW IF EXISTS rescue_region CASCADE;
- DROP VIEW IF EXISTS restriction_fragment CASCADE;
- DROP VIEW IF EXISTS sequence_difference CASCADE;
- DROP VIEW IF EXISTS invalidated_by_genomic_contamination CASCADE;
- DROP VIEW IF EXISTS invalidated_by_genomic_polya_primed_cdna CASCADE;
- DROP VIEW IF EXISTS invalidated_by_partial_processing CASCADE;
- DROP VIEW IF EXISTS polypeptide_domain CASCADE;
- DROP VIEW IF EXISTS signal_peptide CASCADE;
- DROP VIEW IF EXISTS mature_protein_region CASCADE;
- DROP VIEW IF EXISTS five_prime_terminal_inverted_repeat CASCADE;
- DROP VIEW IF EXISTS three_prime_terminal_inverted_repeat CASCADE;
- DROP VIEW IF EXISTS u5_ltr_region CASCADE;
- DROP VIEW IF EXISTS r_ltr_region CASCADE;
- DROP VIEW IF EXISTS u3_ltr_region CASCADE;
- DROP VIEW IF EXISTS five_prime_ltr CASCADE;
- DROP VIEW IF EXISTS three_prime_ltr CASCADE;
- DROP VIEW IF EXISTS r_five_prime_ltr_region CASCADE;
- DROP VIEW IF EXISTS u5_five_prime_ltr_region CASCADE;
- DROP VIEW IF EXISTS u3_five_prime_ltr_region CASCADE;
- DROP VIEW IF EXISTS r_three_prime_ltr_region CASCADE;
- DROP VIEW IF EXISTS u3_three_prime_ltr_region CASCADE;
- DROP VIEW IF EXISTS u5_three_prime_ltr_region CASCADE;
- DROP VIEW IF EXISTS non_ltr_retrotransposon_polymeric_tract CASCADE;
- DROP VIEW IF EXISTS target_site_duplication CASCADE;
- DROP VIEW IF EXISTS rr_tract CASCADE;
- DROP VIEW IF EXISTS ars CASCADE;
- DROP VIEW IF EXISTS inverted_ring_chromosome CASCADE;
- DROP VIEW IF EXISTS vector_replicon CASCADE;
- DROP VIEW IF EXISTS ss_oligo CASCADE;
- DROP VIEW IF EXISTS ds_oligo CASCADE;
- DROP VIEW IF EXISTS polymer_attribute CASCADE;
- DROP VIEW IF EXISTS three_prime_noncoding_exon CASCADE;
- DROP VIEW IF EXISTS five_prime_noncoding_exon CASCADE;
- DROP VIEW IF EXISTS utr_intron CASCADE;
- DROP VIEW IF EXISTS five_prime_utr_intron CASCADE;
- DROP VIEW IF EXISTS three_prime_utr_intron CASCADE;
- DROP VIEW IF EXISTS random_sequence CASCADE;
- DROP VIEW IF EXISTS interband CASCADE;
- DROP VIEW IF EXISTS gene_with_polyadenylated_mrna CASCADE;
- DROP VIEW IF EXISTS chromosomal_transposition CASCADE;
- DROP VIEW IF EXISTS rasirna CASCADE;
- DROP VIEW IF EXISTS gene_with_mrna_with_frameshift CASCADE;
- DROP VIEW IF EXISTS recombinationally_rearranged_gene CASCADE;
- DROP VIEW IF EXISTS interchromosomal_duplication CASCADE;
- DROP VIEW IF EXISTS d_gene CASCADE;
- DROP VIEW IF EXISTS gene_with_trans_spliced_transcript CASCADE;
- DROP VIEW IF EXISTS vertebrate_immunoglobulin_t_cell_receptor_segment CASCADE;
- DROP VIEW IF EXISTS inversion_derived_bipartite_deficiency CASCADE;
- DROP VIEW IF EXISTS pseudogenic_region CASCADE;
- DROP VIEW IF EXISTS encodes_alternately_spliced_transcripts CASCADE;
- DROP VIEW IF EXISTS decayed_exon CASCADE;
- DROP VIEW IF EXISTS inversion_derived_deficiency_plus_duplication CASCADE;
- DROP VIEW IF EXISTS v_gene CASCADE;
- DROP VIEW IF EXISTS post_translationally_regulated_by_protein_stability CASCADE;
- DROP VIEW IF EXISTS golden_path_fragment CASCADE;
- DROP VIEW IF EXISTS post_translationally_regulated_by_protein_modification CASCADE;
- DROP VIEW IF EXISTS j_gene CASCADE;
- DROP VIEW IF EXISTS autoregulated CASCADE;
- DROP VIEW IF EXISTS tiling_path CASCADE;
- DROP VIEW IF EXISTS negatively_autoregulated CASCADE;
- DROP VIEW IF EXISTS tiling_path_fragment CASCADE;
- DROP VIEW IF EXISTS positively_autoregulated CASCADE;
- DROP VIEW IF EXISTS contig_read CASCADE;
- DROP VIEW IF EXISTS c_gene CASCADE;
- DROP VIEW IF EXISTS trans_spliced_transcript CASCADE;
- DROP VIEW IF EXISTS tiling_path_clone CASCADE;
- DROP VIEW IF EXISTS terminal_inverted_repeat CASCADE;
- DROP VIEW IF EXISTS vertebrate_immunoglobulin_t_cell_receptor_gene_cluster CASCADE;
- DROP VIEW IF EXISTS nc_primary_transcript CASCADE;
- DROP VIEW IF EXISTS three_prime_coding_exon_noncoding_region CASCADE;
- DROP VIEW IF EXISTS dj_j_cluster CASCADE;
- DROP VIEW IF EXISTS five_prime_coding_exon_noncoding_region CASCADE;
- DROP VIEW IF EXISTS vdj_j_c_cluster CASCADE;
- DROP VIEW IF EXISTS vdj_j_cluster CASCADE;
- DROP VIEW IF EXISTS vj_c_cluster CASCADE;
- DROP VIEW IF EXISTS vj_j_c_cluster CASCADE;
- DROP VIEW IF EXISTS vj_j_cluster CASCADE;
- DROP VIEW IF EXISTS d_gene_recombination_feature CASCADE;
- DROP VIEW IF EXISTS three_prime_d_heptamer CASCADE;
- DROP VIEW IF EXISTS three_prime_d_nonamer CASCADE;
- DROP VIEW IF EXISTS three_prime_d_spacer CASCADE;
- DROP VIEW IF EXISTS five_prime_d_heptamer CASCADE;
- DROP VIEW IF EXISTS five_prime_d_nonamer CASCADE;
- DROP VIEW IF EXISTS five_prime_d_spacer CASCADE;
- DROP VIEW IF EXISTS virtual_sequence CASCADE;
- DROP VIEW IF EXISTS hoogsteen_base_pair CASCADE;
- DROP VIEW IF EXISTS reverse_hoogsteen_base_pair CASCADE;
- DROP VIEW IF EXISTS d_dj_c_cluster CASCADE;
- DROP VIEW IF EXISTS d_dj_cluster CASCADE;
- DROP VIEW IF EXISTS d_dj_j_c_cluster CASCADE;
- DROP VIEW IF EXISTS pseudogenic_exon CASCADE;
- DROP VIEW IF EXISTS d_dj_j_cluster CASCADE;
- DROP VIEW IF EXISTS d_j_c_cluster CASCADE;
- DROP VIEW IF EXISTS vd_gene CASCADE;
- DROP VIEW IF EXISTS j_c_cluster CASCADE;
- DROP VIEW IF EXISTS inversion_derived_deficiency_plus_aneuploid CASCADE;
- DROP VIEW IF EXISTS j_cluster CASCADE;
- DROP VIEW IF EXISTS j_nonamer CASCADE;
- DROP VIEW IF EXISTS j_heptamer CASCADE;
- DROP VIEW IF EXISTS pseudogenic_transcript CASCADE;
- DROP VIEW IF EXISTS j_spacer CASCADE;
- DROP VIEW IF EXISTS v_dj_cluster CASCADE;
- DROP VIEW IF EXISTS v_dj_j_cluster CASCADE;
- DROP VIEW IF EXISTS v_vdj_c_cluster CASCADE;
- DROP VIEW IF EXISTS v_vdj_cluster CASCADE;
- DROP VIEW IF EXISTS v_vdj_j_cluster CASCADE;
- DROP VIEW IF EXISTS v_vj_c_cluster CASCADE;
- DROP VIEW IF EXISTS v_vj_cluster CASCADE;
- DROP VIEW IF EXISTS v_vj_j_cluster CASCADE;
- DROP VIEW IF EXISTS v_cluster CASCADE;
- DROP VIEW IF EXISTS v_d_dj_c_cluster CASCADE;
- DROP VIEW IF EXISTS v_d_dj_cluster CASCADE;
- DROP VIEW IF EXISTS v_d_dj_j_c_cluster CASCADE;
- DROP VIEW IF EXISTS v_d_dj_j_cluster CASCADE;
- DROP VIEW IF EXISTS v_d_j_c_cluster CASCADE;
- DROP VIEW IF EXISTS v_d_j_cluster CASCADE;
- DROP VIEW IF EXISTS v_heptamer CASCADE;
- DROP VIEW IF EXISTS v_j_cluster CASCADE;
- DROP VIEW IF EXISTS v_j_c_cluster CASCADE;
- DROP VIEW IF EXISTS v_nonamer CASCADE;
- DROP VIEW IF EXISTS v_spacer CASCADE;
- DROP VIEW IF EXISTS v_gene_recombination_feature CASCADE;
- DROP VIEW IF EXISTS dj_c_cluster CASCADE;
- DROP VIEW IF EXISTS dj_j_c_cluster CASCADE;
- DROP VIEW IF EXISTS vdj_c_cluster CASCADE;
- DROP VIEW IF EXISTS v_dj_c_cluster CASCADE;
- DROP VIEW IF EXISTS helitron CASCADE;
- DROP VIEW IF EXISTS recoding_pseudoknot CASCADE;
- DROP VIEW IF EXISTS designed_sequence CASCADE;
- DROP VIEW IF EXISTS inversion_derived_bipartite_duplication CASCADE;
- DROP VIEW IF EXISTS gene_with_edited_transcript CASCADE;
- DROP VIEW IF EXISTS inversion_derived_duplication_plus_aneuploid CASCADE;
- DROP VIEW IF EXISTS aneuploid_chromosome CASCADE;
- DROP VIEW IF EXISTS polya_signal_sequence CASCADE;
- DROP VIEW IF EXISTS shine_dalgarno_sequence CASCADE;
- DROP VIEW IF EXISTS polya_site CASCADE;
- DROP VIEW IF EXISTS five_prime_clip CASCADE;
- DROP VIEW IF EXISTS five_prime_d_recombination_signal_sequence CASCADE;
- DROP VIEW IF EXISTS three_prime_clip CASCADE;
- DROP VIEW IF EXISTS c_cluster CASCADE;
- DROP VIEW IF EXISTS d_cluster CASCADE;
- DROP VIEW IF EXISTS d_j_cluster CASCADE;
- DROP VIEW IF EXISTS heptamer_of_recombination_feature_of_vertebrate_im_sys_gene CASCADE;
- DROP VIEW IF EXISTS nonamer_of_recombination_feature_of_vertebrate_im_sys_gene CASCADE;
- DROP VIEW IF EXISTS vertebrate_immune_system_gene_recombination_spacer CASCADE;
- DROP VIEW IF EXISTS v_dj_j_c_cluster CASCADE;
- DROP VIEW IF EXISTS v_vdj_j_c_cluster CASCADE;
- DROP VIEW IF EXISTS v_vj_j_c_cluster CASCADE;
- DROP VIEW IF EXISTS inversion_derived_aneuploid_chromosome CASCADE;
- DROP VIEW IF EXISTS bidirectional_promoter CASCADE;
- DROP VIEW IF EXISTS retrotransposed CASCADE;
- DROP VIEW IF EXISTS three_prime_d_recombination_signal_sequence CASCADE;
- DROP VIEW IF EXISTS mirna_encoding CASCADE;
- DROP VIEW IF EXISTS dj_gene CASCADE;
- DROP VIEW IF EXISTS rrna_encoding CASCADE;
- DROP VIEW IF EXISTS vdj_gene CASCADE;
- DROP VIEW IF EXISTS scrna_encoding CASCADE;
- DROP VIEW IF EXISTS vj_gene CASCADE;
- DROP VIEW IF EXISTS centromere CASCADE;
- DROP VIEW IF EXISTS snorna_encoding CASCADE;
- DROP VIEW IF EXISTS edited_transcript_feature CASCADE;
- DROP VIEW IF EXISTS methylation_guide_snorna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS cap CASCADE;
- DROP VIEW IF EXISTS rrna_cleavage_snorna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS pre_edited_region CASCADE;
- DROP VIEW IF EXISTS tmrna CASCADE;
- DROP VIEW IF EXISTS c_d_box_snorna_encoding CASCADE;
- DROP VIEW IF EXISTS tmrna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS group_i_intron CASCADE;
- DROP VIEW IF EXISTS autocatalytically_spliced_intron CASCADE;
- DROP VIEW IF EXISTS srp_rna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS srp_rna CASCADE;
- DROP VIEW IF EXISTS pseudoknot CASCADE;
- DROP VIEW IF EXISTS h_pseudoknot CASCADE;
- DROP VIEW IF EXISTS c_d_box_snorna CASCADE;
- DROP VIEW IF EXISTS h_aca_box_snorna CASCADE;
- DROP VIEW IF EXISTS c_d_box_snorna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS h_aca_box_snorna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS guide_rna CASCADE;
- DROP VIEW IF EXISTS group_ii_intron CASCADE;
- DROP VIEW IF EXISTS editing_block CASCADE;
- DROP VIEW IF EXISTS intergenic_region CASCADE;
- DROP VIEW IF EXISTS editing_domain CASCADE;
- DROP VIEW IF EXISTS unedited_region CASCADE;
- DROP VIEW IF EXISTS h_aca_box_snorna_encoding CASCADE;
- DROP VIEW IF EXISTS oligo_u_tail CASCADE;
- DROP VIEW IF EXISTS polya_sequence CASCADE;
- DROP VIEW IF EXISTS branch_site CASCADE;
- DROP VIEW IF EXISTS polypyrimidine_tract CASCADE;
- DROP VIEW IF EXISTS bacterial_rnapol_promoter CASCADE;
- DROP VIEW IF EXISTS bacterial_terminator CASCADE;
- DROP VIEW IF EXISTS terminator_of_type_2_rnapol_iii_promoter CASCADE;
- DROP VIEW IF EXISTS transcription_end_site CASCADE;
- DROP VIEW IF EXISTS rnapol_iii_promoter_type_1 CASCADE;
- DROP VIEW IF EXISTS rnapol_iii_promoter_type_2 CASCADE;
- DROP VIEW IF EXISTS a_box CASCADE;
- DROP VIEW IF EXISTS b_box CASCADE;
- DROP VIEW IF EXISTS rnapol_iii_promoter_type_3 CASCADE;
- DROP VIEW IF EXISTS c_box CASCADE;
- DROP VIEW IF EXISTS snrna_encoding CASCADE;
- DROP VIEW IF EXISTS telomere CASCADE;
- DROP VIEW IF EXISTS silencer CASCADE;
- DROP VIEW IF EXISTS chromosomal_regulatory_element CASCADE;
- DROP VIEW IF EXISTS insulator CASCADE;
- DROP VIEW IF EXISTS chromosomal_structural_element CASCADE;
- DROP VIEW IF EXISTS five_prime_open_reading_frame CASCADE;
- DROP VIEW IF EXISTS upstream_aug_codon CASCADE;
- DROP VIEW IF EXISTS polycistronic_primary_transcript CASCADE;
- DROP VIEW IF EXISTS monocistronic_primary_transcript CASCADE;
- DROP VIEW IF EXISTS monocistronic_mrna CASCADE;
- DROP VIEW IF EXISTS polycistronic_mrna CASCADE;
- DROP VIEW IF EXISTS mini_exon_donor_rna CASCADE;
- DROP VIEW IF EXISTS spliced_leader_rna CASCADE;
- DROP VIEW IF EXISTS engineered_plasmid CASCADE;
- DROP VIEW IF EXISTS transcribed_spacer_region CASCADE;
- DROP VIEW IF EXISTS internal_transcribed_spacer_region CASCADE;
- DROP VIEW IF EXISTS external_transcribed_spacer_region CASCADE;
- DROP VIEW IF EXISTS tetranuc_repeat_microsat CASCADE;
- DROP VIEW IF EXISTS srp_rna_encoding CASCADE;
- DROP VIEW IF EXISTS minisatellite CASCADE;
- DROP VIEW IF EXISTS antisense_rna CASCADE;
- DROP VIEW IF EXISTS antisense_primary_transcript CASCADE;
- DROP VIEW IF EXISTS sirna CASCADE;
- DROP VIEW IF EXISTS mirna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS strna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS strna CASCADE;
- DROP VIEW IF EXISTS small_subunit_rrna CASCADE;
- DROP VIEW IF EXISTS large_subunit_rrna CASCADE;
- DROP VIEW IF EXISTS rrna_5s CASCADE;
- DROP VIEW IF EXISTS rrna_28s CASCADE;
- DROP VIEW IF EXISTS maxicircle_gene CASCADE;
- DROP VIEW IF EXISTS ncrna CASCADE;
- DROP VIEW IF EXISTS strna_encoding CASCADE;
- DROP VIEW IF EXISTS repeat_region CASCADE;
- DROP VIEW IF EXISTS dispersed_repeat CASCADE;
- DROP VIEW IF EXISTS tmrna_encoding CASCADE;
- DROP VIEW IF EXISTS spliceosomal_intron CASCADE;
- DROP VIEW IF EXISTS trna_encoding CASCADE;
- DROP VIEW IF EXISTS introgressed_chromosome_region CASCADE;
- DROP VIEW IF EXISTS monocistronic_transcript CASCADE;
- DROP VIEW IF EXISTS mobile_intron CASCADE;
- DROP VIEW IF EXISTS insertion CASCADE;
- DROP VIEW IF EXISTS est_match CASCADE;
- DROP VIEW IF EXISTS sequence_rearrangement_feature CASCADE;
- DROP VIEW IF EXISTS chromosome_breakage_sequence CASCADE;
- DROP VIEW IF EXISTS internal_eliminated_sequence CASCADE;
- DROP VIEW IF EXISTS macronucleus_destined_segment CASCADE;
- DROP VIEW IF EXISTS transcript CASCADE;
- DROP VIEW IF EXISTS canonical_three_prime_splice_site CASCADE;
- DROP VIEW IF EXISTS canonical_five_prime_splice_site CASCADE;
- DROP VIEW IF EXISTS non_canonical_three_prime_splice_site CASCADE;
- DROP VIEW IF EXISTS non_canonical_five_prime_splice_site CASCADE;
- DROP VIEW IF EXISTS non_canonical_start_codon CASCADE;
- DROP VIEW IF EXISTS aberrant_processed_transcript CASCADE;
- DROP VIEW IF EXISTS exonic_splice_enhancer CASCADE;
- DROP VIEW IF EXISTS nuclease_sensitive_site CASCADE;
- DROP VIEW IF EXISTS dnasei_hypersensitive_site CASCADE;
- DROP VIEW IF EXISTS translocation_element CASCADE;
- DROP VIEW IF EXISTS deletion_junction CASCADE;
- DROP VIEW IF EXISTS golden_path CASCADE;
- DROP VIEW IF EXISTS cdna_match CASCADE;
- DROP VIEW IF EXISTS gene_with_polycistronic_transcript CASCADE;
- DROP VIEW IF EXISTS cleaved_initiator_methionine CASCADE;
- DROP VIEW IF EXISTS gene_with_dicistronic_transcript CASCADE;
- DROP VIEW IF EXISTS gene_with_recoded_mrna CASCADE;
- DROP VIEW IF EXISTS snp CASCADE;
- DROP VIEW IF EXISTS reagent CASCADE;
- DROP VIEW IF EXISTS oligo CASCADE;
- DROP VIEW IF EXISTS gene_with_stop_codon_read_through CASCADE;
- DROP VIEW IF EXISTS gene_with_stop_codon_redefined_as_pyrrolysine CASCADE;
- DROP VIEW IF EXISTS junction CASCADE;
- DROP VIEW IF EXISTS remark CASCADE;
- DROP VIEW IF EXISTS possible_base_call_error CASCADE;
- DROP VIEW IF EXISTS possible_assembly_error CASCADE;
- DROP VIEW IF EXISTS experimental_result_region CASCADE;
- DROP VIEW IF EXISTS gene CASCADE;
- DROP VIEW IF EXISTS tandem_repeat CASCADE;
- DROP VIEW IF EXISTS trans_splice_acceptor_site CASCADE;
- DROP VIEW IF EXISTS trans_splice_donor_site CASCADE;
- DROP VIEW IF EXISTS sl1_acceptor_site CASCADE;
- DROP VIEW IF EXISTS sl2_acceptor_site CASCADE;
- DROP VIEW IF EXISTS gene_with_stop_codon_redefined_as_selenocysteine CASCADE;
- DROP VIEW IF EXISTS gene_with_mrna_recoded_by_translational_bypass CASCADE;
- DROP VIEW IF EXISTS gene_with_transcript_with_translational_frameshift CASCADE;
- DROP VIEW IF EXISTS dna_motif CASCADE;
- DROP VIEW IF EXISTS nucleotide_motif CASCADE;
- DROP VIEW IF EXISTS rna_motif CASCADE;
- DROP VIEW IF EXISTS dicistronic_mrna CASCADE;
- DROP VIEW IF EXISTS reading_frame CASCADE;
- DROP VIEW IF EXISTS blocked_reading_frame CASCADE;
- DROP VIEW IF EXISTS ultracontig CASCADE;
- DROP VIEW IF EXISTS foreign_transposable_element CASCADE;
- DROP VIEW IF EXISTS gene_with_dicistronic_primary_transcript CASCADE;
- DROP VIEW IF EXISTS gene_with_dicistronic_mrna CASCADE;
- DROP VIEW IF EXISTS idna CASCADE;
- DROP VIEW IF EXISTS orit CASCADE;
- DROP VIEW IF EXISTS transit_peptide CASCADE;
- DROP VIEW IF EXISTS repeat_unit CASCADE;
- DROP VIEW IF EXISTS crm CASCADE;
- DROP VIEW IF EXISTS intein CASCADE;
- DROP VIEW IF EXISTS intein_containing CASCADE;
- DROP VIEW IF EXISTS gap CASCADE;
- DROP VIEW IF EXISTS fragmentary CASCADE;
- DROP VIEW IF EXISTS predicted CASCADE;
- DROP VIEW IF EXISTS feature_attribute CASCADE;
- DROP VIEW IF EXISTS exemplar_mrna CASCADE;
- DROP VIEW IF EXISTS sequence_location CASCADE;
- DROP VIEW IF EXISTS organelle_sequence CASCADE;
- DROP VIEW IF EXISTS mitochondrial_sequence CASCADE;
- DROP VIEW IF EXISTS nuclear_sequence CASCADE;
- DROP VIEW IF EXISTS nucleomorphic_sequence CASCADE;
- DROP VIEW IF EXISTS plastid_sequence CASCADE;
- DROP VIEW IF EXISTS kinetoplast CASCADE;
- DROP VIEW IF EXISTS maxicircle CASCADE;
- DROP VIEW IF EXISTS apicoplast_sequence CASCADE;
- DROP VIEW IF EXISTS chromoplast_sequence CASCADE;
- DROP VIEW IF EXISTS chloroplast_sequence CASCADE;
- DROP VIEW IF EXISTS cyanelle_sequence CASCADE;
- DROP VIEW IF EXISTS leucoplast_sequence CASCADE;
- DROP VIEW IF EXISTS proplastid_sequence CASCADE;
- DROP VIEW IF EXISTS plasmid_location CASCADE;
- DROP VIEW IF EXISTS amplification_origin CASCADE;
- DROP VIEW IF EXISTS proviral_location CASCADE;
- DROP VIEW IF EXISTS gene_group_regulatory_region CASCADE;
- DROP VIEW IF EXISTS clone_insert CASCADE;
- DROP VIEW IF EXISTS lambda_vector CASCADE;
- DROP VIEW IF EXISTS plasmid_vector CASCADE;
- DROP VIEW IF EXISTS cdna CASCADE;
- DROP VIEW IF EXISTS single_stranded_cdna CASCADE;
- DROP VIEW IF EXISTS double_stranded_cdna CASCADE;
- DROP VIEW IF EXISTS pyrrolysyl_trna CASCADE;
- DROP VIEW IF EXISTS episome CASCADE;
- DROP VIEW IF EXISTS tmrna_coding_piece CASCADE;
- DROP VIEW IF EXISTS tmrna_acceptor_piece CASCADE;
- DROP VIEW IF EXISTS qtl CASCADE;
- DROP VIEW IF EXISTS genomic_island CASCADE;
- DROP VIEW IF EXISTS pathogenic_island CASCADE;
- DROP VIEW IF EXISTS metabolic_island CASCADE;
- DROP VIEW IF EXISTS adaptive_island CASCADE;
- DROP VIEW IF EXISTS symbiosis_island CASCADE;
- DROP VIEW IF EXISTS pseudogenic_rrna CASCADE;
- DROP VIEW IF EXISTS pseudogenic_trna CASCADE;
- DROP VIEW IF EXISTS engineered_episome CASCADE;
- DROP VIEW IF EXISTS transgenic CASCADE;
- DROP VIEW IF EXISTS so_natural CASCADE;
- DROP VIEW IF EXISTS engineered CASCADE;
- DROP VIEW IF EXISTS so_foreign CASCADE;
- DROP VIEW IF EXISTS cloned_region CASCADE;
- DROP VIEW IF EXISTS validated CASCADE;
- DROP VIEW IF EXISTS invalidated CASCADE;
- DROP VIEW IF EXISTS engineered_rescue_region CASCADE;
- DROP VIEW IF EXISTS rescue_mini_gene CASCADE;
- DROP VIEW IF EXISTS transgenic_transposable_element CASCADE;
- DROP VIEW IF EXISTS natural_transposable_element CASCADE;
- DROP VIEW IF EXISTS engineered_transposable_element CASCADE;
- DROP VIEW IF EXISTS engineered_foreign_transposable_element CASCADE;
- DROP VIEW IF EXISTS assortment_derived_duplication CASCADE;
- DROP VIEW IF EXISTS assortment_derived_deficiency_plus_duplication CASCADE;
- DROP VIEW IF EXISTS assortment_derived_deficiency CASCADE;
- DROP VIEW IF EXISTS assortment_derived_aneuploid CASCADE;
- DROP VIEW IF EXISTS engineered_region CASCADE;
- DROP VIEW IF EXISTS engineered_foreign_region CASCADE;
- DROP VIEW IF EXISTS fusion CASCADE;
- DROP VIEW IF EXISTS engineered_tag CASCADE;
- DROP VIEW IF EXISTS validated_cdna_clone CASCADE;
- DROP VIEW IF EXISTS invalidated_cdna_clone CASCADE;
- DROP VIEW IF EXISTS chimeric_cdna_clone CASCADE;
- DROP VIEW IF EXISTS genomically_contaminated_cdna_clone CASCADE;
- DROP VIEW IF EXISTS polya_primed_cdna_clone CASCADE;
- DROP VIEW IF EXISTS partially_processed_cdna_clone CASCADE;
- DROP VIEW IF EXISTS rescue CASCADE;
- DROP VIEW IF EXISTS mini_gene CASCADE;
- DROP VIEW IF EXISTS rescue_gene CASCADE;
- DROP VIEW IF EXISTS wild_type CASCADE;
- DROP VIEW IF EXISTS wild_type_rescue_gene CASCADE;
- DROP VIEW IF EXISTS mitochondrial_chromosome CASCADE;
- DROP VIEW IF EXISTS chloroplast_chromosome CASCADE;
- DROP VIEW IF EXISTS chromoplast_chromosome CASCADE;
- DROP VIEW IF EXISTS cyanelle_chromosome CASCADE;
- DROP VIEW IF EXISTS leucoplast_chromosome CASCADE;
- DROP VIEW IF EXISTS macronuclear_chromosome CASCADE;
- DROP VIEW IF EXISTS micronuclear_chromosome CASCADE;
- DROP VIEW IF EXISTS nuclear_chromosome CASCADE;
- DROP VIEW IF EXISTS nucleomorphic_chromosome CASCADE;
- DROP VIEW IF EXISTS chromosome_part CASCADE;
- DROP VIEW IF EXISTS gene_member_region CASCADE;
- DROP VIEW IF EXISTS transcript_region CASCADE;
- DROP VIEW IF EXISTS mature_transcript_region CASCADE;
- DROP VIEW IF EXISTS primary_transcript_region CASCADE;
- DROP VIEW IF EXISTS mrna_region CASCADE;
- DROP VIEW IF EXISTS utr_region CASCADE;
- DROP VIEW IF EXISTS rrna_primary_transcript_region CASCADE;
- DROP VIEW IF EXISTS polypeptide_region CASCADE;
- DROP VIEW IF EXISTS repeat_component CASCADE;
- DROP VIEW IF EXISTS spliceosomal_intron_region CASCADE;
- DROP VIEW IF EXISTS gene_component_region CASCADE;
- DROP VIEW IF EXISTS tmrna_region CASCADE;
- DROP VIEW IF EXISTS ltr_component CASCADE;
- DROP VIEW IF EXISTS three_prime_ltr_component CASCADE;
- DROP VIEW IF EXISTS five_prime_ltr_component CASCADE;
- DROP VIEW IF EXISTS cds_region CASCADE;
- DROP VIEW IF EXISTS exon_region CASCADE;
- DROP VIEW IF EXISTS homologous_region CASCADE;
- DROP VIEW IF EXISTS paralogous_region CASCADE;
- DROP VIEW IF EXISTS orthologous_region CASCADE;
- DROP VIEW IF EXISTS conserved CASCADE;
- DROP VIEW IF EXISTS homologous CASCADE;
- DROP VIEW IF EXISTS orthologous CASCADE;
- DROP VIEW IF EXISTS paralogous CASCADE;
- DROP VIEW IF EXISTS syntenic CASCADE;
- DROP VIEW IF EXISTS capped_primary_transcript CASCADE;
- DROP VIEW IF EXISTS capped_mrna CASCADE;
- DROP VIEW IF EXISTS mrna_attribute CASCADE;
- DROP VIEW IF EXISTS exemplar CASCADE;
- DROP VIEW IF EXISTS frameshift CASCADE;
- DROP VIEW IF EXISTS minus_1_frameshift CASCADE;
- DROP VIEW IF EXISTS minus_2_frameshift CASCADE;
- DROP VIEW IF EXISTS plus_1_frameshift CASCADE;
- DROP VIEW IF EXISTS plus_2_framshift CASCADE;
- DROP VIEW IF EXISTS trans_spliced CASCADE;
- DROP VIEW IF EXISTS polyadenylated_mrna CASCADE;
- DROP VIEW IF EXISTS trans_spliced_mrna CASCADE;
- DROP VIEW IF EXISTS edited_transcript CASCADE;
- DROP VIEW IF EXISTS edited_transcript_by_a_to_i_substitution CASCADE;
- DROP VIEW IF EXISTS bound_by_protein CASCADE;
- DROP VIEW IF EXISTS bound_by_nucleic_acid CASCADE;
- DROP VIEW IF EXISTS alternatively_spliced CASCADE;
- DROP VIEW IF EXISTS monocistronic CASCADE;
- DROP VIEW IF EXISTS dicistronic CASCADE;
- DROP VIEW IF EXISTS polycistronic CASCADE;
- DROP VIEW IF EXISTS recoded CASCADE;
- DROP VIEW IF EXISTS codon_redefined CASCADE;
- DROP VIEW IF EXISTS stop_codon_read_through CASCADE;
- DROP VIEW IF EXISTS stop_codon_redefined_as_pyrrolysine CASCADE;
- DROP VIEW IF EXISTS stop_codon_redefined_as_selenocysteine CASCADE;
- DROP VIEW IF EXISTS recoded_by_translational_bypass CASCADE;
- DROP VIEW IF EXISTS translationally_frameshifted CASCADE;
- DROP VIEW IF EXISTS maternally_imprinted_gene CASCADE;
- DROP VIEW IF EXISTS paternally_imprinted_gene CASCADE;
- DROP VIEW IF EXISTS post_translationally_regulated_gene CASCADE;
- DROP VIEW IF EXISTS negatively_autoregulated_gene CASCADE;
- DROP VIEW IF EXISTS positively_autoregulated_gene CASCADE;
- DROP VIEW IF EXISTS silenced CASCADE;
- DROP VIEW IF EXISTS silenced_by_dna_modification CASCADE;
- DROP VIEW IF EXISTS silenced_by_dna_methylation CASCADE;
- DROP VIEW IF EXISTS translationally_regulated_gene CASCADE;
- DROP VIEW IF EXISTS allelically_excluded_gene CASCADE;
- DROP VIEW IF EXISTS epigenetically_modified_gene CASCADE;
- DROP VIEW IF EXISTS transgene CASCADE;
- DROP VIEW IF EXISTS endogenous_retroviral_sequence CASCADE;
- DROP VIEW IF EXISTS rearranged_at_dna_level CASCADE;
- DROP VIEW IF EXISTS status CASCADE;
- DROP VIEW IF EXISTS independently_known CASCADE;
- DROP VIEW IF EXISTS supported_by_sequence_similarity CASCADE;
- DROP VIEW IF EXISTS supported_by_domain_match CASCADE;
- DROP VIEW IF EXISTS supported_by_est_or_cdna CASCADE;
- DROP VIEW IF EXISTS orphan CASCADE;
- DROP VIEW IF EXISTS predicted_by_ab_initio_computation CASCADE;
- DROP VIEW IF EXISTS asx_turn CASCADE;
- DROP VIEW IF EXISTS cloned_cdna_insert CASCADE;
- DROP VIEW IF EXISTS cloned_genomic_insert CASCADE;
- DROP VIEW IF EXISTS engineered_insert CASCADE;
- DROP VIEW IF EXISTS edited_mrna CASCADE;
- DROP VIEW IF EXISTS guide_rna_region CASCADE;
- DROP VIEW IF EXISTS anchor_region CASCADE;
- DROP VIEW IF EXISTS pre_edited_mrna CASCADE;
- DROP VIEW IF EXISTS intermediate CASCADE;
- DROP VIEW IF EXISTS mirna_target_site CASCADE;
- DROP VIEW IF EXISTS edited_cds CASCADE;
- DROP VIEW IF EXISTS vertebrate_immunoglobulin_t_cell_receptor_rearranged_segment CASCADE;
- DROP VIEW IF EXISTS vertebrate_ig_t_cell_receptor_rearranged_gene_cluster CASCADE;
- DROP VIEW IF EXISTS vertebrate_immune_system_gene_recombination_signal_feature CASCADE;
- DROP VIEW IF EXISTS recombinationally_rearranged CASCADE;
- DROP VIEW IF EXISTS recombinationally_rearranged_vertebrate_immune_system_gene CASCADE;
- DROP VIEW IF EXISTS attp_site CASCADE;
- DROP VIEW IF EXISTS attb_site CASCADE;
- DROP VIEW IF EXISTS attl_site CASCADE;
- DROP VIEW IF EXISTS attr_site CASCADE;
- DROP VIEW IF EXISTS integration_excision_site CASCADE;
- DROP VIEW IF EXISTS resolution_site CASCADE;
- DROP VIEW IF EXISTS inversion_site CASCADE;
- DROP VIEW IF EXISTS dif_site CASCADE;
- DROP VIEW IF EXISTS attc_site CASCADE;
- DROP VIEW IF EXISTS eukaryotic_terminator CASCADE;
- DROP VIEW IF EXISTS oriv CASCADE;
- DROP VIEW IF EXISTS oric CASCADE;
- DROP VIEW IF EXISTS dna_chromosome CASCADE;
- DROP VIEW IF EXISTS double_stranded_dna_chromosome CASCADE;
- DROP VIEW IF EXISTS single_stranded_dna_chromosome CASCADE;
- DROP VIEW IF EXISTS linear_double_stranded_dna_chromosome CASCADE;
- DROP VIEW IF EXISTS circular_double_stranded_dna_chromosome CASCADE;
- DROP VIEW IF EXISTS linear_single_stranded_dna_chromosome CASCADE;
- DROP VIEW IF EXISTS circular_single_stranded_dna_chromosome CASCADE;
- DROP VIEW IF EXISTS rna_chromosome CASCADE;
- DROP VIEW IF EXISTS single_stranded_rna_chromosome CASCADE;
- DROP VIEW IF EXISTS linear_single_stranded_rna_chromosome CASCADE;
- DROP VIEW IF EXISTS linear_double_stranded_rna_chromosome CASCADE;
- DROP VIEW IF EXISTS double_stranded_rna_chromosome CASCADE;
- DROP VIEW IF EXISTS circular_single_stranded_rna_chromosome CASCADE;
- DROP VIEW IF EXISTS circular_double_stranded_rna_chromosome CASCADE;
- DROP VIEW IF EXISTS insertion_sequence CASCADE;
- DROP VIEW IF EXISTS minicircle_gene CASCADE;
- DROP VIEW IF EXISTS cryptic CASCADE;
- DROP VIEW IF EXISTS anchor_binding_site CASCADE;
- DROP VIEW IF EXISTS template_region CASCADE;
- DROP VIEW IF EXISTS grna_encoding CASCADE;
- DROP VIEW IF EXISTS minicircle CASCADE;
- DROP VIEW IF EXISTS rho_dependent_bacterial_terminator CASCADE;
- DROP VIEW IF EXISTS rho_independent_bacterial_terminator CASCADE;
- DROP VIEW IF EXISTS strand_attribute CASCADE;
- DROP VIEW IF EXISTS single CASCADE;
- DROP VIEW IF EXISTS double CASCADE;
- DROP VIEW IF EXISTS topology_attribute CASCADE;
- DROP VIEW IF EXISTS linear CASCADE;
- DROP VIEW IF EXISTS circular CASCADE;
- DROP VIEW IF EXISTS class_ii_rna CASCADE;
- DROP VIEW IF EXISTS class_i_rna CASCADE;
- DROP VIEW IF EXISTS genomic_dna CASCADE;
- DROP VIEW IF EXISTS bac_cloned_genomic_insert CASCADE;
- DROP VIEW IF EXISTS consensus CASCADE;
- DROP VIEW IF EXISTS consensus_region CASCADE;
- DROP VIEW IF EXISTS consensus_mrna CASCADE;
- DROP VIEW IF EXISTS predicted_gene CASCADE;
- DROP VIEW IF EXISTS gene_fragment CASCADE;
- DROP VIEW IF EXISTS recursive_splice_site CASCADE;
- DROP VIEW IF EXISTS bac_end CASCADE;
- DROP VIEW IF EXISTS rrna_16s CASCADE;
- DROP VIEW IF EXISTS rrna_23s CASCADE;
- DROP VIEW IF EXISTS rrna_25s CASCADE;
- DROP VIEW IF EXISTS solo_ltr CASCADE;
- DROP VIEW IF EXISTS low_complexity CASCADE;
- DROP VIEW IF EXISTS low_complexity_region CASCADE;
- DROP VIEW IF EXISTS prophage CASCADE;
- DROP VIEW IF EXISTS cryptic_prophage CASCADE;
- DROP VIEW IF EXISTS tetraloop CASCADE;
- DROP VIEW IF EXISTS dna_constraint_sequence CASCADE;
- DROP VIEW IF EXISTS i_motif CASCADE;
- DROP VIEW IF EXISTS pna_oligo CASCADE;
- DROP VIEW IF EXISTS dnazyme CASCADE;
- DROP VIEW IF EXISTS mnp CASCADE;
- DROP VIEW IF EXISTS intron_domain CASCADE;
- DROP VIEW IF EXISTS wobble_base_pair CASCADE;
- DROP VIEW IF EXISTS internal_guide_sequence CASCADE;
- DROP VIEW IF EXISTS silent_mutation CASCADE;
- DROP VIEW IF EXISTS epitope CASCADE;
- DROP VIEW IF EXISTS copy_number_variation CASCADE;
- DROP VIEW IF EXISTS chromosome_breakpoint CASCADE;
- DROP VIEW IF EXISTS inversion_breakpoint CASCADE;
- DROP VIEW IF EXISTS allele CASCADE;
- DROP VIEW IF EXISTS haplotype CASCADE;
- DROP VIEW IF EXISTS polymorphic_sequence_variant CASCADE;
- DROP VIEW IF EXISTS genome CASCADE;
- DROP VIEW IF EXISTS so_genotype CASCADE;
- DROP VIEW IF EXISTS diplotype CASCADE;
- DROP VIEW IF EXISTS direction_attribute CASCADE;
- DROP VIEW IF EXISTS forward CASCADE;
- DROP VIEW IF EXISTS reverse CASCADE;
- DROP VIEW IF EXISTS mitochondrial_dna CASCADE;
- DROP VIEW IF EXISTS chloroplast_dna CASCADE;
- DROP VIEW IF EXISTS mirtron CASCADE;
- DROP VIEW IF EXISTS pirna CASCADE;
- DROP VIEW IF EXISTS arginyl_trna CASCADE;
- DROP VIEW IF EXISTS mobile_genetic_element CASCADE;
- DROP VIEW IF EXISTS extrachromosomal_mobile_genetic_element CASCADE;
- DROP VIEW IF EXISTS integrated_mobile_genetic_element CASCADE;
- DROP VIEW IF EXISTS integrated_plasmid CASCADE;
- DROP VIEW IF EXISTS viral_sequence CASCADE;
- DROP VIEW IF EXISTS phage_sequence CASCADE;
- DROP VIEW IF EXISTS attctn_site CASCADE;
- DROP VIEW IF EXISTS nuclear_mt_pseudogene CASCADE;
- DROP VIEW IF EXISTS cointegrated_plasmid CASCADE;
- DROP VIEW IF EXISTS irlinv_site CASCADE;
- DROP VIEW IF EXISTS irrinv_site CASCADE;
- DROP VIEW IF EXISTS inversion_site_part CASCADE;
- DROP VIEW IF EXISTS defective_conjugative_transposon CASCADE;
- DROP VIEW IF EXISTS repeat_fragment CASCADE;
- DROP VIEW IF EXISTS transposon_fragment CASCADE;
- DROP VIEW IF EXISTS transcriptional_cis_regulatory_region CASCADE;
- DROP VIEW IF EXISTS splicing_regulatory_region CASCADE;
- DROP VIEW IF EXISTS promoter_targeting_sequence CASCADE;
- DROP VIEW IF EXISTS sequence_alteration CASCADE;
- DROP VIEW IF EXISTS sequence_variant CASCADE;
- DROP VIEW IF EXISTS propeptide_cleavage_site CASCADE;
- DROP VIEW IF EXISTS propeptide CASCADE;
- DROP VIEW IF EXISTS immature_peptide_region CASCADE;
- DROP VIEW IF EXISTS active_peptide CASCADE;
- DROP VIEW IF EXISTS compositionally_biased_region_of_peptide CASCADE;
- DROP VIEW IF EXISTS polypeptide_motif CASCADE;
- DROP VIEW IF EXISTS polypeptide_repeat CASCADE;
- DROP VIEW IF EXISTS polypeptide_structural_region CASCADE;
- DROP VIEW IF EXISTS membrane_structure CASCADE;
- DROP VIEW IF EXISTS extramembrane_polypeptide_region CASCADE;
- DROP VIEW IF EXISTS cytoplasmic_polypeptide_region CASCADE;
- DROP VIEW IF EXISTS non_cytoplasmic_polypeptide_region CASCADE;
- DROP VIEW IF EXISTS intramembrane_polypeptide_region CASCADE;
- DROP VIEW IF EXISTS membrane_peptide_loop CASCADE;
- DROP VIEW IF EXISTS transmembrane_polypeptide_region CASCADE;
- DROP VIEW IF EXISTS polypeptide_secondary_structure CASCADE;
- DROP VIEW IF EXISTS polypeptide_structural_motif CASCADE;
- DROP VIEW IF EXISTS coiled_coil CASCADE;
- DROP VIEW IF EXISTS helix_turn_helix CASCADE;
- DROP VIEW IF EXISTS polypeptide_sequencing_information CASCADE;
- DROP VIEW IF EXISTS non_adjacent_residues CASCADE;
- DROP VIEW IF EXISTS non_terminal_residue CASCADE;
- DROP VIEW IF EXISTS sequence_conflict CASCADE;
- DROP VIEW IF EXISTS sequence_uncertainty CASCADE;
- DROP VIEW IF EXISTS post_translationally_modified_region CASCADE;
- DROP VIEW IF EXISTS polypeptide_metal_contact CASCADE;
- DROP VIEW IF EXISTS protein_protein_contact CASCADE;
- DROP VIEW IF EXISTS polypeptide_calcium_ion_contact_site CASCADE;
- DROP VIEW IF EXISTS polypeptide_cobalt_ion_contact_site CASCADE;
- DROP VIEW IF EXISTS polypeptide_copper_ion_contact_site CASCADE;
- DROP VIEW IF EXISTS polypeptide_iron_ion_contact_site CASCADE;
- DROP VIEW IF EXISTS polypeptide_magnesium_ion_contact_site CASCADE;
- DROP VIEW IF EXISTS polypeptide_manganese_ion_contact_site CASCADE;
- DROP VIEW IF EXISTS polypeptide_molybdenum_ion_contact_site CASCADE;
- DROP VIEW IF EXISTS polypeptide_nickel_ion_contact_site CASCADE;
- DROP VIEW IF EXISTS polypeptide_tungsten_ion_contact_site CASCADE;
- DROP VIEW IF EXISTS polypeptide_zinc_ion_contact_site CASCADE;
- DROP VIEW IF EXISTS catalytic_residue CASCADE;
- DROP VIEW IF EXISTS polypeptide_ligand_contact CASCADE;
- DROP VIEW IF EXISTS asx_motif CASCADE;
- DROP VIEW IF EXISTS beta_bulge CASCADE;
- DROP VIEW IF EXISTS beta_bulge_loop CASCADE;
- DROP VIEW IF EXISTS beta_bulge_loop_five CASCADE;
- DROP VIEW IF EXISTS beta_bulge_loop_six CASCADE;
- DROP VIEW IF EXISTS beta_strand CASCADE;
- DROP VIEW IF EXISTS antiparallel_beta_strand CASCADE;
- DROP VIEW IF EXISTS parallel_beta_strand CASCADE;
- DROP VIEW IF EXISTS peptide_helix CASCADE;
- DROP VIEW IF EXISTS left_handed_peptide_helix CASCADE;
- DROP VIEW IF EXISTS right_handed_peptide_helix CASCADE;
- DROP VIEW IF EXISTS alpha_helix CASCADE;
- DROP VIEW IF EXISTS pi_helix CASCADE;
- DROP VIEW IF EXISTS three_ten_helix CASCADE;
- DROP VIEW IF EXISTS polypeptide_nest_motif CASCADE;
- DROP VIEW IF EXISTS polypeptide_nest_left_right_motif CASCADE;
- DROP VIEW IF EXISTS polypeptide_nest_right_left_motif CASCADE;
- DROP VIEW IF EXISTS schellmann_loop CASCADE;
- DROP VIEW IF EXISTS schellmann_loop_seven CASCADE;
- DROP VIEW IF EXISTS schellmann_loop_six CASCADE;
- DROP VIEW IF EXISTS serine_threonine_motif CASCADE;
- DROP VIEW IF EXISTS serine_threonine_staple_motif CASCADE;
- DROP VIEW IF EXISTS polypeptide_turn_motif CASCADE;
- DROP VIEW IF EXISTS asx_turn_left_handed_type_one CASCADE;
- DROP VIEW IF EXISTS asx_turn_left_handed_type_two CASCADE;
- DROP VIEW IF EXISTS asx_turn_right_handed_type_two CASCADE;
- DROP VIEW IF EXISTS asx_turn_right_handed_type_one CASCADE;
- DROP VIEW IF EXISTS beta_turn CASCADE;
- DROP VIEW IF EXISTS beta_turn_left_handed_type_one CASCADE;
- DROP VIEW IF EXISTS beta_turn_left_handed_type_two CASCADE;
- DROP VIEW IF EXISTS beta_turn_right_handed_type_one CASCADE;
- DROP VIEW IF EXISTS beta_turn_right_handed_type_two CASCADE;
- DROP VIEW IF EXISTS gamma_turn CASCADE;
- DROP VIEW IF EXISTS gamma_turn_classic CASCADE;
- DROP VIEW IF EXISTS gamma_turn_inverse CASCADE;
- DROP VIEW IF EXISTS serine_threonine_turn CASCADE;
- DROP VIEW IF EXISTS st_turn_left_handed_type_one CASCADE;
- DROP VIEW IF EXISTS st_turn_left_handed_type_two CASCADE;
- DROP VIEW IF EXISTS st_turn_right_handed_type_one CASCADE;
- DROP VIEW IF EXISTS st_turn_right_handed_type_two CASCADE;
- DROP VIEW IF EXISTS polypeptide_variation_site CASCADE;
- DROP VIEW IF EXISTS natural_variant_site CASCADE;
- DROP VIEW IF EXISTS mutated_variant_site CASCADE;
- DROP VIEW IF EXISTS alternate_sequence_site CASCADE;
- DROP VIEW IF EXISTS beta_turn_type_six CASCADE;
- DROP VIEW IF EXISTS beta_turn_type_six_a CASCADE;
- DROP VIEW IF EXISTS beta_turn_type_six_a_one CASCADE;
- DROP VIEW IF EXISTS beta_turn_type_six_a_two CASCADE;
- DROP VIEW IF EXISTS beta_turn_type_six_b CASCADE;
- DROP VIEW IF EXISTS beta_turn_type_eight CASCADE;
- DROP VIEW IF EXISTS dre_motif CASCADE;
- DROP VIEW IF EXISTS dmv4_motif CASCADE;
- DROP VIEW IF EXISTS e_box_motif CASCADE;
- DROP VIEW IF EXISTS dmv5_motif CASCADE;
- DROP VIEW IF EXISTS dmv3_motif CASCADE;
- DROP VIEW IF EXISTS dmv2_motif CASCADE;
- DROP VIEW IF EXISTS mte CASCADE;
- DROP VIEW IF EXISTS inr1_motif CASCADE;
- DROP VIEW IF EXISTS dpe1_motif CASCADE;
- DROP VIEW IF EXISTS dmv1_motif CASCADE;
- DROP VIEW IF EXISTS gaga_motif CASCADE;
- DROP VIEW IF EXISTS ndm2_motif CASCADE;
- DROP VIEW IF EXISTS ndm3_motif CASCADE;
- DROP VIEW IF EXISTS ds_rna_viral_sequence CASCADE;
- DROP VIEW IF EXISTS polinton CASCADE;
- DROP VIEW IF EXISTS rrna_21s CASCADE;
- DROP VIEW IF EXISTS trna_region CASCADE;
- DROP VIEW IF EXISTS anticodon_loop CASCADE;
- DROP VIEW IF EXISTS anticodon CASCADE;
- DROP VIEW IF EXISTS cca_tail CASCADE;
- DROP VIEW IF EXISTS dhu_loop CASCADE;
- DROP VIEW IF EXISTS t_loop CASCADE;
- DROP VIEW IF EXISTS pyrrolysine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS u3_snorna CASCADE;
- DROP VIEW IF EXISTS au_rich_element CASCADE;
- DROP VIEW IF EXISTS bruno_response_element CASCADE;
- DROP VIEW IF EXISTS iron_responsive_element CASCADE;
- DROP VIEW IF EXISTS morpholino_backbone CASCADE;
- DROP VIEW IF EXISTS pna CASCADE;
- DROP VIEW IF EXISTS enzymatic CASCADE;
- DROP VIEW IF EXISTS ribozymic CASCADE;
- DROP VIEW IF EXISTS pseudouridylation_guide_snorna CASCADE;
- DROP VIEW IF EXISTS lna CASCADE;
- DROP VIEW IF EXISTS lna_oligo CASCADE;
- DROP VIEW IF EXISTS tna CASCADE;
- DROP VIEW IF EXISTS tna_oligo CASCADE;
- DROP VIEW IF EXISTS gna CASCADE;
- DROP VIEW IF EXISTS gna_oligo CASCADE;
- DROP VIEW IF EXISTS r_gna CASCADE;
- DROP VIEW IF EXISTS r_gna_oligo CASCADE;
- DROP VIEW IF EXISTS s_gna CASCADE;
- DROP VIEW IF EXISTS s_gna_oligo CASCADE;
- DROP VIEW IF EXISTS ds_dna_viral_sequence CASCADE;
- DROP VIEW IF EXISTS ss_rna_viral_sequence CASCADE;
- DROP VIEW IF EXISTS negative_sense_ssrna_viral_sequence CASCADE;
- DROP VIEW IF EXISTS positive_sense_ssrna_viral_sequence CASCADE;
- DROP VIEW IF EXISTS ambisense_ssrna_viral_sequence CASCADE;
- DROP VIEW IF EXISTS rna_polymerase_promoter CASCADE;
- DROP VIEW IF EXISTS phage_rna_polymerase_promoter CASCADE;
- DROP VIEW IF EXISTS sp6_rna_polymerase_promoter CASCADE;
- DROP VIEW IF EXISTS t3_rna_polymerase_promoter CASCADE;
- DROP VIEW IF EXISTS t7_rna_polymerase_promoter CASCADE;
- DROP VIEW IF EXISTS five_prime_est CASCADE;
- DROP VIEW IF EXISTS three_prime_est CASCADE;
- DROP VIEW IF EXISTS translational_frameshift CASCADE;
- DROP VIEW IF EXISTS plus_1_translational_frameshift CASCADE;
- DROP VIEW IF EXISTS plus_2_translational_frameshift CASCADE;
- DROP VIEW IF EXISTS group_iii_intron CASCADE;
- DROP VIEW IF EXISTS noncoding_region_of_exon CASCADE;
- DROP VIEW IF EXISTS coding_region_of_exon CASCADE;
- DROP VIEW IF EXISTS endonuclease_spliced_intron CASCADE;
- DROP VIEW IF EXISTS transgenic_insertion CASCADE;
- DROP VIEW IF EXISTS retrogene CASCADE;
- DROP VIEW IF EXISTS silenced_by_rna_interference CASCADE;
- DROP VIEW IF EXISTS silenced_by_histone_modification CASCADE;
- DROP VIEW IF EXISTS silenced_by_histone_methylation CASCADE;
- DROP VIEW IF EXISTS silenced_by_histone_deacetylation CASCADE;
- DROP VIEW IF EXISTS gene_silenced_by_rna_interference CASCADE;
- DROP VIEW IF EXISTS gene_silenced_by_histone_modification CASCADE;
- DROP VIEW IF EXISTS gene_silenced_by_histone_methylation CASCADE;
- DROP VIEW IF EXISTS gene_silenced_by_histone_deacetylation CASCADE;
- DROP VIEW IF EXISTS dihydrouridine CASCADE;
- DROP VIEW IF EXISTS pseudouridine CASCADE;
- DROP VIEW IF EXISTS inosine CASCADE;
- DROP VIEW IF EXISTS seven_methylguanine CASCADE;
- DROP VIEW IF EXISTS ribothymidine CASCADE;
- DROP VIEW IF EXISTS methylinosine CASCADE;
- DROP VIEW IF EXISTS mobile CASCADE;
- DROP VIEW IF EXISTS replicon CASCADE;
- DROP VIEW IF EXISTS base CASCADE;
- DROP VIEW IF EXISTS amino_acid CASCADE;
- DROP VIEW IF EXISTS major_tss CASCADE;
- DROP VIEW IF EXISTS minor_tss CASCADE;
- DROP VIEW IF EXISTS tss_region CASCADE;
- DROP VIEW IF EXISTS encodes_alternate_transcription_start_sites CASCADE;
- DROP VIEW IF EXISTS mirna_primary_transcript_region CASCADE;
- DROP VIEW IF EXISTS pre_mirna CASCADE;
- DROP VIEW IF EXISTS mirna_stem CASCADE;
- DROP VIEW IF EXISTS mirna_loop CASCADE;
- DROP VIEW IF EXISTS synthetic_oligo CASCADE;
- DROP VIEW IF EXISTS assembly CASCADE;
- DROP VIEW IF EXISTS fragment_assembly CASCADE;
- DROP VIEW IF EXISTS fingerprint_map CASCADE;
- DROP VIEW IF EXISTS sts_map CASCADE;
- DROP VIEW IF EXISTS rh_map CASCADE;
- DROP VIEW IF EXISTS sonicate_fragment CASCADE;
- DROP VIEW IF EXISTS polyploid CASCADE;
- DROP VIEW IF EXISTS autopolyploid CASCADE;
- DROP VIEW IF EXISTS allopolyploid CASCADE;
- DROP VIEW IF EXISTS homing_endonuclease_binding_site CASCADE;
- DROP VIEW IF EXISTS octamer_motif CASCADE;
- DROP VIEW IF EXISTS apicoplast_chromosome CASCADE;
- DROP VIEW IF EXISTS sequence_collection CASCADE;
- DROP VIEW IF EXISTS overlapping_feature_set CASCADE;
- DROP VIEW IF EXISTS overlapping_est_set CASCADE;
- DROP VIEW IF EXISTS ncrna_gene CASCADE;
- DROP VIEW IF EXISTS grna_gene CASCADE;
- DROP VIEW IF EXISTS mirna_gene CASCADE;
- DROP VIEW IF EXISTS scrna_gene CASCADE;
- DROP VIEW IF EXISTS snorna_gene CASCADE;
- DROP VIEW IF EXISTS snrna_gene CASCADE;
- DROP VIEW IF EXISTS srp_rna_gene CASCADE;
- DROP VIEW IF EXISTS strna_gene CASCADE;
- DROP VIEW IF EXISTS tmrna_gene CASCADE;
- DROP VIEW IF EXISTS trna_gene CASCADE;
- DROP VIEW IF EXISTS modified_adenosine CASCADE;
- DROP VIEW IF EXISTS modified_inosine CASCADE;
- DROP VIEW IF EXISTS modified_cytidine CASCADE;
- DROP VIEW IF EXISTS modified_guanosine CASCADE;
- DROP VIEW IF EXISTS modified_uridine CASCADE;
- DROP VIEW IF EXISTS one_methylinosine CASCADE;
- DROP VIEW IF EXISTS one_two_prime_o_dimethylinosine CASCADE;
- DROP VIEW IF EXISTS two_prime_o_methylinosine CASCADE;
- DROP VIEW IF EXISTS three_methylcytidine CASCADE;
- DROP VIEW IF EXISTS five_methylcytidine CASCADE;
- DROP VIEW IF EXISTS two_prime_o_methylcytidine CASCADE;
- DROP VIEW IF EXISTS two_thiocytidine CASCADE;
- DROP VIEW IF EXISTS n4_acetylcytidine CASCADE;
- DROP VIEW IF EXISTS five_formylcytidine CASCADE;
- DROP VIEW IF EXISTS five_two_prime_o_dimethylcytidine CASCADE;
- DROP VIEW IF EXISTS n4_acetyl_2_prime_o_methylcytidine CASCADE;
- DROP VIEW IF EXISTS lysidine CASCADE;
- DROP VIEW IF EXISTS n4_methylcytidine CASCADE;
- DROP VIEW IF EXISTS n4_2_prime_o_dimethylcytidine CASCADE;
- DROP VIEW IF EXISTS five_hydroxymethylcytidine CASCADE;
- DROP VIEW IF EXISTS five_formyl_two_prime_o_methylcytidine CASCADE;
- DROP VIEW IF EXISTS n4_n4_2_prime_o_trimethylcytidine CASCADE;
- DROP VIEW IF EXISTS one_methyladenosine CASCADE;
- DROP VIEW IF EXISTS two_methyladenosine CASCADE;
- DROP VIEW IF EXISTS n6_methyladenosine CASCADE;
- DROP VIEW IF EXISTS two_prime_o_methyladenosine CASCADE;
- DROP VIEW IF EXISTS two_methylthio_n6_methyladenosine CASCADE;
- DROP VIEW IF EXISTS n6_isopentenyladenosine CASCADE;
- DROP VIEW IF EXISTS two_methylthio_n6_isopentenyladenosine CASCADE;
- DROP VIEW IF EXISTS n6_cis_hydroxyisopentenyl_adenosine CASCADE;
- DROP VIEW IF EXISTS two_methylthio_n6_cis_hydroxyisopentenyl_adenosine CASCADE;
- DROP VIEW IF EXISTS n6_glycinylcarbamoyladenosine CASCADE;
- DROP VIEW IF EXISTS n6_threonylcarbamoyladenosine CASCADE;
- DROP VIEW IF EXISTS two_methylthio_n6_threonyl_carbamoyladenosine CASCADE;
- DROP VIEW IF EXISTS n6_methyl_n6_threonylcarbamoyladenosine CASCADE;
- DROP VIEW IF EXISTS n6_hydroxynorvalylcarbamoyladenosine CASCADE;
- DROP VIEW IF EXISTS two_methylthio_n6_hydroxynorvalyl_carbamoyladenosine CASCADE;
- DROP VIEW IF EXISTS two_prime_o_riboA_phosphate CASCADE;
- DROP VIEW IF EXISTS n6_n6_dimethyladenosine CASCADE;
- DROP VIEW IF EXISTS n6_2_prime_o_dimethyladenosine CASCADE;
- DROP VIEW IF EXISTS n6_n6_2_prime_o_trimethyladenosine CASCADE;
- DROP VIEW IF EXISTS one_two_prime_o_dimethyladenosine CASCADE;
- DROP VIEW IF EXISTS n6_acetyladenosine CASCADE;
- DROP VIEW IF EXISTS seven_deazaguanosine CASCADE;
- DROP VIEW IF EXISTS queuosine CASCADE;
- DROP VIEW IF EXISTS epoxyqueuosine CASCADE;
- DROP VIEW IF EXISTS galactosyl_queuosine CASCADE;
- DROP VIEW IF EXISTS mannosyl_queuosine CASCADE;
- DROP VIEW IF EXISTS seven_cyano_seven_deazaguanosine CASCADE;
- DROP VIEW IF EXISTS seven_aminomethyl_seven_deazaguanosine CASCADE;
- DROP VIEW IF EXISTS archaeosine CASCADE;
- DROP VIEW IF EXISTS one_methylguanosine CASCADE;
- DROP VIEW IF EXISTS n2_methylguanosine CASCADE;
- DROP VIEW IF EXISTS seven_methylguanosine CASCADE;
- DROP VIEW IF EXISTS two_prime_o_methylguanosine CASCADE;
- DROP VIEW IF EXISTS n2_n2_dimethylguanosine CASCADE;
- DROP VIEW IF EXISTS n2_2_prime_o_dimethylguanosine CASCADE;
- DROP VIEW IF EXISTS n2_n2_2_prime_o_trimethylguanosine CASCADE;
- DROP VIEW IF EXISTS two_prime_o_ribosylguanosine_phosphate CASCADE;
- DROP VIEW IF EXISTS wybutosine CASCADE;
- DROP VIEW IF EXISTS peroxywybutosine CASCADE;
- DROP VIEW IF EXISTS hydroxywybutosine CASCADE;
- DROP VIEW IF EXISTS undermodified_hydroxywybutosine CASCADE;
- DROP VIEW IF EXISTS wyosine CASCADE;
- DROP VIEW IF EXISTS methylwyosine CASCADE;
- DROP VIEW IF EXISTS n2_7_dimethylguanosine CASCADE;
- DROP VIEW IF EXISTS n2_n2_7_trimethylguanosine CASCADE;
- DROP VIEW IF EXISTS one_two_prime_o_dimethylguanosine CASCADE;
- DROP VIEW IF EXISTS four_demethylwyosine CASCADE;
- DROP VIEW IF EXISTS isowyosine CASCADE;
- DROP VIEW IF EXISTS n2_7_2prirme_o_trimethylguanosine CASCADE;
- DROP VIEW IF EXISTS five_methyluridine CASCADE;
- DROP VIEW IF EXISTS two_prime_o_methyluridine CASCADE;
- DROP VIEW IF EXISTS five_two_prime_o_dimethyluridine CASCADE;
- DROP VIEW IF EXISTS one_methylpseudouridine CASCADE;
- DROP VIEW IF EXISTS two_prime_o_methylpseudouridine CASCADE;
- DROP VIEW IF EXISTS two_thiouridine CASCADE;
- DROP VIEW IF EXISTS four_thiouridine CASCADE;
- DROP VIEW IF EXISTS five_methyl_2_thiouridine CASCADE;
- DROP VIEW IF EXISTS two_thio_two_prime_o_methyluridine CASCADE;
- DROP VIEW IF EXISTS three_three_amino_three_carboxypropyl_uridine CASCADE;
- DROP VIEW IF EXISTS five_hydroxyuridine CASCADE;
- DROP VIEW IF EXISTS five_methoxyuridine CASCADE;
- DROP VIEW IF EXISTS uridine_five_oxyacetic_acid CASCADE;
- DROP VIEW IF EXISTS uridine_five_oxyacetic_acid_methyl_ester CASCADE;
- DROP VIEW IF EXISTS five_carboxyhydroxymethyl_uridine CASCADE;
- DROP VIEW IF EXISTS five_carboxyhydroxymethyl_uridine_methyl_ester CASCADE;
- DROP VIEW IF EXISTS five_methoxycarbonylmethyluridine CASCADE;
- DROP VIEW IF EXISTS five_methoxycarbonylmethyl_two_prime_o_methyluridine CASCADE;
- DROP VIEW IF EXISTS five_mcm_2_thiouridine CASCADE;
- DROP VIEW IF EXISTS five_aminomethyl_two_thiouridine CASCADE;
- DROP VIEW IF EXISTS five_methylaminomethyluridine CASCADE;
- DROP VIEW IF EXISTS five_mam_2_thiouridine CASCADE;
- DROP VIEW IF EXISTS five_methylaminomethyl_two_selenouridine CASCADE;
- DROP VIEW IF EXISTS five_carbamoylmethyluridine CASCADE;
- DROP VIEW IF EXISTS five_cm_2_prime_o_methU CASCADE;
- DROP VIEW IF EXISTS five_carboxymethylaminomethyluridine CASCADE;
- DROP VIEW IF EXISTS five_carboxymethylaminomethyl_two_prime_o_methyluridine CASCADE;
- DROP VIEW IF EXISTS five_carboxymethylaminomethyl_two_thiouridine CASCADE;
- DROP VIEW IF EXISTS three_methyluridine CASCADE;
- DROP VIEW IF EXISTS one_methyl_3_3_amino_three_carboxypropyl_pseudouridine CASCADE;
- DROP VIEW IF EXISTS five_carboxymethyluridine CASCADE;
- DROP VIEW IF EXISTS three_two_prime_o_dimethyluridine CASCADE;
- DROP VIEW IF EXISTS five_methyldihydrouridine CASCADE;
- DROP VIEW IF EXISTS three_methylpseudouridine CASCADE;
- DROP VIEW IF EXISTS five_taurinomethyluridine CASCADE;
- DROP VIEW IF EXISTS five_taurinomethyl_two_thiouridine CASCADE;
- DROP VIEW IF EXISTS five_isopentenylaminomethyl_uridine CASCADE;
- DROP VIEW IF EXISTS five_isopentenylaminomethyl_two_thiouridine CASCADE;
- DROP VIEW IF EXISTS five_isopentenylaminomethyl_two_prime_o_methyluridine CASCADE;
- DROP VIEW IF EXISTS histone_binding_site CASCADE;
- DROP VIEW IF EXISTS cds_fragment CASCADE;
- DROP VIEW IF EXISTS modified_amino_acid_feature CASCADE;
- DROP VIEW IF EXISTS modified_glycine CASCADE;
- DROP VIEW IF EXISTS modified_l_alanine CASCADE;
- DROP VIEW IF EXISTS modified_l_asparagine CASCADE;
- DROP VIEW IF EXISTS modified_l_aspartic_acid CASCADE;
- DROP VIEW IF EXISTS modified_l_cysteine CASCADE;
- DROP VIEW IF EXISTS modified_l_glutamic_acid CASCADE;
- DROP VIEW IF EXISTS modified_l_threonine CASCADE;
- DROP VIEW IF EXISTS modified_l_tryptophan CASCADE;
- DROP VIEW IF EXISTS modified_l_glutamine CASCADE;
- DROP VIEW IF EXISTS modified_l_methionine CASCADE;
- DROP VIEW IF EXISTS modified_l_isoleucine CASCADE;
- DROP VIEW IF EXISTS modified_l_phenylalanine CASCADE;
- DROP VIEW IF EXISTS modified_l_histidine CASCADE;
- DROP VIEW IF EXISTS modified_l_serine CASCADE;
- DROP VIEW IF EXISTS modified_l_lysine CASCADE;
- DROP VIEW IF EXISTS modified_l_leucine CASCADE;
- DROP VIEW IF EXISTS modified_l_selenocysteine CASCADE;
- DROP VIEW IF EXISTS modified_l_valine CASCADE;
- DROP VIEW IF EXISTS modified_l_proline CASCADE;
- DROP VIEW IF EXISTS modified_l_tyrosine CASCADE;
- DROP VIEW IF EXISTS modified_l_arginine CASCADE;
- DROP VIEW IF EXISTS peptidyl CASCADE;
- DROP VIEW IF EXISTS cleaved_for_gpi_anchor_region CASCADE;
- DROP VIEW IF EXISTS biomaterial_region CASCADE;
- DROP VIEW IF EXISTS experimental_feature CASCADE;
- DROP VIEW IF EXISTS biological_region CASCADE;
- DROP VIEW IF EXISTS topologically_defined_region CASCADE;
- DROP VIEW IF EXISTS translocation_breakpoint CASCADE;
- DROP VIEW IF EXISTS insertion_breakpoint CASCADE;
- DROP VIEW IF EXISTS deletion_breakpoint CASCADE;
- DROP VIEW IF EXISTS five_prime_flanking_region CASCADE;
- DROP VIEW IF EXISTS three_prime_flanking_region CASCADE;
- DROP VIEW IF EXISTS transcribed_fragment CASCADE;
- DROP VIEW IF EXISTS cis_splice_site CASCADE;
- DROP VIEW IF EXISTS trans_splice_site CASCADE;
- DROP VIEW IF EXISTS splice_junction CASCADE;
- DROP VIEW IF EXISTS conformational_switch CASCADE;
- DROP VIEW IF EXISTS dye_terminator_read CASCADE;
- DROP VIEW IF EXISTS pyrosequenced_read CASCADE;
- DROP VIEW IF EXISTS ligation_based_read CASCADE;
- DROP VIEW IF EXISTS polymerase_synthesis_read CASCADE;
- DROP VIEW IF EXISTS cis_regulatory_frameshift_element CASCADE;
- DROP VIEW IF EXISTS expressed_sequence_assembly CASCADE;
- DROP VIEW IF EXISTS dna_binding_site CASCADE;
- DROP VIEW IF EXISTS cryptic_gene CASCADE;
- DROP VIEW IF EXISTS three_prime_race_clone CASCADE;
- DROP VIEW IF EXISTS cassette_pseudogene CASCADE;
- DROP VIEW IF EXISTS alanine CASCADE;
- DROP VIEW IF EXISTS valine CASCADE;
- DROP VIEW IF EXISTS leucine CASCADE;
- DROP VIEW IF EXISTS isoleucine CASCADE;
- DROP VIEW IF EXISTS proline CASCADE;
- DROP VIEW IF EXISTS tryptophan CASCADE;
- DROP VIEW IF EXISTS phenylalanine CASCADE;
- DROP VIEW IF EXISTS methionine CASCADE;
- DROP VIEW IF EXISTS glycine CASCADE;
- DROP VIEW IF EXISTS serine CASCADE;
- DROP VIEW IF EXISTS threonine CASCADE;
- DROP VIEW IF EXISTS tyrosine CASCADE;
- DROP VIEW IF EXISTS cysteine CASCADE;
- DROP VIEW IF EXISTS glutamine CASCADE;
- DROP VIEW IF EXISTS asparagine CASCADE;
- DROP VIEW IF EXISTS lysine CASCADE;
- DROP VIEW IF EXISTS arginine CASCADE;
- DROP VIEW IF EXISTS histidine CASCADE;
- DROP VIEW IF EXISTS aspartic_acid CASCADE;
- DROP VIEW IF EXISTS glutamic_acid CASCADE;
- DROP VIEW IF EXISTS selenocysteine CASCADE;
- DROP VIEW IF EXISTS pyrrolysine CASCADE;
- DROP VIEW IF EXISTS transcribed_cluster CASCADE;
- DROP VIEW IF EXISTS unigene_cluster CASCADE;
- DROP VIEW IF EXISTS crispr CASCADE;
- DROP VIEW IF EXISTS insulator_binding_site CASCADE;
- DROP VIEW IF EXISTS enhancer_binding_site CASCADE;
- DROP VIEW IF EXISTS contig_collection CASCADE;
- DROP VIEW IF EXISTS lincrna CASCADE;
- DROP VIEW IF EXISTS ust CASCADE;
- DROP VIEW IF EXISTS three_prime_ust CASCADE;
- DROP VIEW IF EXISTS five_prime_ust CASCADE;
- DROP VIEW IF EXISTS rst CASCADE;
- DROP VIEW IF EXISTS three_prime_rst CASCADE;
- DROP VIEW IF EXISTS five_prime_rst CASCADE;
- DROP VIEW IF EXISTS ust_match CASCADE;
- DROP VIEW IF EXISTS rst_match CASCADE;
- DROP VIEW IF EXISTS primer_match CASCADE;
- DROP VIEW IF EXISTS mirna_antiguide CASCADE;
- DROP VIEW IF EXISTS trans_splice_junction CASCADE;
- DROP VIEW IF EXISTS outron CASCADE;
- DROP VIEW IF EXISTS natural_plasmid CASCADE;
- DROP VIEW IF EXISTS gene_trap_construct CASCADE;
- DROP VIEW IF EXISTS promoter_trap_construct CASCADE;
- DROP VIEW IF EXISTS enhancer_trap_construct CASCADE;
- DROP VIEW IF EXISTS pac_end CASCADE;
- DROP VIEW IF EXISTS rapd CASCADE;
- DROP VIEW IF EXISTS shadow_enhancer CASCADE;
- DROP VIEW IF EXISTS snv CASCADE;
- DROP VIEW IF EXISTS x_element_combinatorial_repeat CASCADE;
- DROP VIEW IF EXISTS y_prime_element CASCADE;
- DROP VIEW IF EXISTS standard_draft CASCADE;
- DROP VIEW IF EXISTS high_quality_draft CASCADE;
- DROP VIEW IF EXISTS improved_high_quality_draft CASCADE;
- DROP VIEW IF EXISTS annotation_directed_improved_draft CASCADE;
- DROP VIEW IF EXISTS noncontiguous_finished CASCADE;
- DROP VIEW IF EXISTS finished_genome CASCADE;
- DROP VIEW IF EXISTS intronic_regulatory_region CASCADE;
- DROP VIEW IF EXISTS centromere_dna_element_i CASCADE;
- DROP VIEW IF EXISTS centromere_dna_element_ii CASCADE;
- DROP VIEW IF EXISTS centromere_dna_element_iii CASCADE;
- DROP VIEW IF EXISTS telomeric_repeat CASCADE;
- DROP VIEW IF EXISTS x_element CASCADE;
- DROP VIEW IF EXISTS yac_end CASCADE;
- DROP VIEW IF EXISTS whole_genome_sequence_status CASCADE;
- DROP VIEW IF EXISTS heritable_phenotypic_marker CASCADE;
- DROP VIEW IF EXISTS peptide_collection CASCADE;
- DROP VIEW IF EXISTS high_identity_region CASCADE;
- DROP VIEW IF EXISTS processed_transcript CASCADE;
- DROP VIEW IF EXISTS assortment_derived_variation CASCADE;
- DROP VIEW IF EXISTS reference_genome CASCADE;
- DROP VIEW IF EXISTS variant_genome CASCADE;
- DROP VIEW IF EXISTS variant_collection CASCADE;
- DROP VIEW IF EXISTS alteration_attribute CASCADE;
- DROP VIEW IF EXISTS chromosomal_variation_attribute CASCADE;
- DROP VIEW IF EXISTS intrachromosomal CASCADE;
- DROP VIEW IF EXISTS interchromosomal CASCADE;
- DROP VIEW IF EXISTS insertion_attribute CASCADE;
- DROP VIEW IF EXISTS tandem CASCADE;
- DROP VIEW IF EXISTS direct CASCADE;
- DROP VIEW IF EXISTS inverted CASCADE;
- DROP VIEW IF EXISTS free CASCADE;
- DROP VIEW IF EXISTS inversion_attribute CASCADE;
- DROP VIEW IF EXISTS pericentric CASCADE;
- DROP VIEW IF EXISTS paracentric CASCADE;
- DROP VIEW IF EXISTS translocaton_attribute CASCADE;
- DROP VIEW IF EXISTS reciprocal CASCADE;
- DROP VIEW IF EXISTS insertional CASCADE;
- DROP VIEW IF EXISTS duplication_attribute CASCADE;
- DROP VIEW IF EXISTS chromosomally_aberrant_genome CASCADE;
- DROP VIEW IF EXISTS assembly_error_correction CASCADE;
- DROP VIEW IF EXISTS base_call_error_correction CASCADE;
- DROP VIEW IF EXISTS peptide_localization_signal CASCADE;
- DROP VIEW IF EXISTS nuclear_localization_signal CASCADE;
- DROP VIEW IF EXISTS endosomal_localization_signal CASCADE;
- DROP VIEW IF EXISTS lysosomal_localization_signal CASCADE;
- DROP VIEW IF EXISTS nuclear_export_signal CASCADE;
- DROP VIEW IF EXISTS recombination_signal_sequence CASCADE;
- DROP VIEW IF EXISTS cryptic_splice_site CASCADE;
- DROP VIEW IF EXISTS nuclear_rim_localization_signal CASCADE;
- DROP VIEW IF EXISTS p_element CASCADE;
- DROP VIEW IF EXISTS functional_variant CASCADE;
- DROP VIEW IF EXISTS structural_variant CASCADE;
- DROP VIEW IF EXISTS transcript_function_variant CASCADE;
- DROP VIEW IF EXISTS translational_product_function_variant CASCADE;
- DROP VIEW IF EXISTS level_of_transcript_variant CASCADE;
- DROP VIEW IF EXISTS decreased_transcript_level_variant CASCADE;
- DROP VIEW IF EXISTS increased_transcript_level_variant CASCADE;
- DROP VIEW IF EXISTS transcript_processing_variant CASCADE;
- DROP VIEW IF EXISTS editing_variant CASCADE;
- DROP VIEW IF EXISTS polyadenylation_variant CASCADE;
- DROP VIEW IF EXISTS transcript_stability_variant CASCADE;
- DROP VIEW IF EXISTS decreased_transcript_stability_variant CASCADE;
- DROP VIEW IF EXISTS increased_transcript_stability_variant CASCADE;
- DROP VIEW IF EXISTS transcription_variant CASCADE;
- DROP VIEW IF EXISTS rate_of_transcription_variant CASCADE;
- DROP VIEW IF EXISTS increased_transcription_rate_variant CASCADE;
- DROP VIEW IF EXISTS decreased_transcription_rate_variant CASCADE;
- DROP VIEW IF EXISTS translational_product_level_variant CASCADE;
- DROP VIEW IF EXISTS polypeptide_function_variant CASCADE;
- DROP VIEW IF EXISTS decreased_translational_product_level CASCADE;
- DROP VIEW IF EXISTS increased_translational_product_level CASCADE;
- DROP VIEW IF EXISTS polypeptide_gain_of_function_variant CASCADE;
- DROP VIEW IF EXISTS polypeptide_localization_variant CASCADE;
- DROP VIEW IF EXISTS polypeptide_loss_of_function_variant CASCADE;
- DROP VIEW IF EXISTS inactive_ligand_binding_site CASCADE;
- DROP VIEW IF EXISTS polypeptide_partial_loss_of_function CASCADE;
- DROP VIEW IF EXISTS polypeptide_post_translational_processing_variant CASCADE;
- DROP VIEW IF EXISTS copy_number_change CASCADE;
- DROP VIEW IF EXISTS gene_variant CASCADE;
- DROP VIEW IF EXISTS gene_fusion CASCADE;
- DROP VIEW IF EXISTS regulatory_region_variant CASCADE;
- DROP VIEW IF EXISTS stop_retained_variant CASCADE;
- DROP VIEW IF EXISTS splicing_variant CASCADE;
- DROP VIEW IF EXISTS cryptic_splice_site_variant CASCADE;
- DROP VIEW IF EXISTS cryptic_splice_acceptor CASCADE;
- DROP VIEW IF EXISTS cryptic_splice_donor CASCADE;
- DROP VIEW IF EXISTS exon_loss CASCADE;
- DROP VIEW IF EXISTS intron_gain CASCADE;
- DROP VIEW IF EXISTS splice_acceptor_variant CASCADE;
- DROP VIEW IF EXISTS splice_donor_variant CASCADE;
- DROP VIEW IF EXISTS transcript_variant CASCADE;
- DROP VIEW IF EXISTS complex_change_in_transcript CASCADE;
- DROP VIEW IF EXISTS stop_lost CASCADE;
- DROP VIEW IF EXISTS coding_sequence_variant CASCADE;
- DROP VIEW IF EXISTS codon_variant CASCADE;
- DROP VIEW IF EXISTS initiator_codon_change CASCADE;
- DROP VIEW IF EXISTS non_synonymous_codon CASCADE;
- DROP VIEW IF EXISTS conservative_missense_codon CASCADE;
- DROP VIEW IF EXISTS non_conservative_missense_codon CASCADE;
- DROP VIEW IF EXISTS stop_gained CASCADE;
- DROP VIEW IF EXISTS synonymous_codon CASCADE;
- DROP VIEW IF EXISTS frameshift_variant CASCADE;
- DROP VIEW IF EXISTS terminator_codon_variant CASCADE;
- DROP VIEW IF EXISTS frame_restoring_variant CASCADE;
- DROP VIEW IF EXISTS minus_1_frameshift_variant CASCADE;
- DROP VIEW IF EXISTS minus_2_frameshift_variant CASCADE;
- DROP VIEW IF EXISTS plus_1_frameshift_variant CASCADE;
- DROP VIEW IF EXISTS plus_2_frameshift_variant CASCADE;
- DROP VIEW IF EXISTS transcript_secondary_structure_variant CASCADE;
- DROP VIEW IF EXISTS compensatory_transcript_secondary_structure_variant CASCADE;
- DROP VIEW IF EXISTS translational_product_structure_variant CASCADE;
- DROP VIEW IF EXISTS threed_polypeptide_structure_variant CASCADE;
- DROP VIEW IF EXISTS complex_3d_structural_variant CASCADE;
- DROP VIEW IF EXISTS conformational_change_variant CASCADE;
- DROP VIEW IF EXISTS complex_change_of_translational_product_variant CASCADE;
- DROP VIEW IF EXISTS polypeptide_sequence_variant CASCADE;
- DROP VIEW IF EXISTS amino_acid_deletion CASCADE;
- DROP VIEW IF EXISTS amino_acid_insertion CASCADE;
- DROP VIEW IF EXISTS amino_acid_substitution CASCADE;
- DROP VIEW IF EXISTS conservative_amino_acid_substitution CASCADE;
- DROP VIEW IF EXISTS non_conservative_amino_acid_substitution CASCADE;
- DROP VIEW IF EXISTS elongated_polypeptide CASCADE;
- DROP VIEW IF EXISTS elongated_polypeptide_c_terminal CASCADE;
- DROP VIEW IF EXISTS elongated_polypeptide_n_terminal CASCADE;
- DROP VIEW IF EXISTS elongated_in_frame_polypeptide_c_terminal CASCADE;
- DROP VIEW IF EXISTS elongated_out_of_frame_polypeptide_c_terminal CASCADE;
- DROP VIEW IF EXISTS elongated_in_frame_polypeptide_n_terminal_elongation CASCADE;
- DROP VIEW IF EXISTS elongated_out_of_frame_polypeptide_n_terminal CASCADE;
- DROP VIEW IF EXISTS polypeptide_fusion CASCADE;
- DROP VIEW IF EXISTS polypeptide_truncation CASCADE;
- DROP VIEW IF EXISTS inactive_catalytic_site CASCADE;
- DROP VIEW IF EXISTS nc_transcript_variant CASCADE;
- DROP VIEW IF EXISTS mature_mirna_variant CASCADE;
- DROP VIEW IF EXISTS nmd_transcript_variant CASCADE;
- DROP VIEW IF EXISTS utr_variant CASCADE;
- DROP VIEW IF EXISTS five_prime_utr_variant CASCADE;
- DROP VIEW IF EXISTS three_prime_utr_variant CASCADE;
- DROP VIEW IF EXISTS terminal_codon_variant CASCADE;
- DROP VIEW IF EXISTS incomplete_terminal_codon_variant CASCADE;
- DROP VIEW IF EXISTS intron_variant CASCADE;
- DROP VIEW IF EXISTS intergenic_variant CASCADE;
- DROP VIEW IF EXISTS splice_site_variant CASCADE;
- DROP VIEW IF EXISTS splice_region_variant CASCADE;
- DROP VIEW IF EXISTS upstream_gene_variant CASCADE;
- DROP VIEW IF EXISTS downstream_gene_variant CASCADE;
- DROP VIEW IF EXISTS fivekb_downstream_variant CASCADE;
- DROP VIEW IF EXISTS fivehundred_b_downstream_variant CASCADE;
- DROP VIEW IF EXISTS fivekb_upstream_variant CASCADE;
- DROP VIEW IF EXISTS twokb_upstream_variant CASCADE;
- DROP VIEW IF EXISTS rrna_gene CASCADE;
- DROP VIEW IF EXISTS pirna_gene CASCADE;
- DROP VIEW IF EXISTS rnase_p_rna_gene CASCADE;
- DROP VIEW IF EXISTS rnase_mrp_rna_gene CASCADE;
- DROP VIEW IF EXISTS lincrna_gene CASCADE;
- DROP VIEW IF EXISTS mathematically_defined_repeat CASCADE;
- DROP VIEW IF EXISTS telomerase_rna_gene CASCADE;
- DROP VIEW IF EXISTS targeting_vector CASCADE;
- DROP VIEW IF EXISTS genetic_marker CASCADE;
- DROP VIEW IF EXISTS dart_marker CASCADE;
- DROP VIEW IF EXISTS kozak_sequence CASCADE;
- DROP VIEW IF EXISTS nested_transposon CASCADE;
- DROP VIEW IF EXISTS nested_repeat CASCADE;
- DROP VIEW IF EXISTS inframe_variant CASCADE;
- DROP VIEW IF EXISTS inframe_codon_gain CASCADE;
- DROP VIEW IF EXISTS inframe_codon_loss CASCADE;
- DROP VIEW IF EXISTS retinoic_acid_responsive_element CASCADE;
- DROP VIEW IF EXISTS nucleotide_to_protein_binding_site CASCADE;
- DROP VIEW IF EXISTS nucleotide_binding_site CASCADE;
- DROP VIEW IF EXISTS metal_binding_site CASCADE;
- DROP VIEW IF EXISTS ligand_binding_site CASCADE;
- DROP VIEW IF EXISTS nested_tandem_repeat CASCADE;
- DROP VIEW IF EXISTS promoter_element CASCADE;
- DROP VIEW IF EXISTS core_promoter_element CASCADE;
- DROP VIEW IF EXISTS rna_polymerase_ii_tata_box CASCADE;
- DROP VIEW IF EXISTS rna_polymerase_iii_tata_box CASCADE;
- DROP VIEW IF EXISTS bred_motif CASCADE;
- DROP VIEW IF EXISTS dce CASCADE;
- DROP VIEW IF EXISTS dce_si CASCADE;
- DROP VIEW IF EXISTS dce_sii CASCADE;
- DROP VIEW IF EXISTS dce_siii CASCADE;
- DROP VIEW IF EXISTS proximal_promoter_element CASCADE;
- DROP VIEW IF EXISTS rnapol_ii_core_promoter CASCADE;
- DROP VIEW IF EXISTS distal_promoter_element CASCADE;
- DROP VIEW IF EXISTS bacterial_rnapol_promoter_sigma_70 CASCADE;
- DROP VIEW IF EXISTS bacterial_rnapol_promoter_sigma54 CASCADE;
- DROP VIEW IF EXISTS minus_12_signal CASCADE;
- DROP VIEW IF EXISTS minus_24_signal CASCADE;
- DROP VIEW IF EXISTS a_box_type_1 CASCADE;
- DROP VIEW IF EXISTS a_box_type_2 CASCADE;
- DROP VIEW IF EXISTS intermediate_element CASCADE;
- DROP VIEW IF EXISTS regulatory_promoter_element CASCADE;
- DROP VIEW IF EXISTS transcription_regulatory_region CASCADE;
- DROP VIEW IF EXISTS translation_regulatory_region CASCADE;
- DROP VIEW IF EXISTS recombination_regulatory_region CASCADE;
- DROP VIEW IF EXISTS replication_regulatory_region CASCADE;
- DROP VIEW IF EXISTS sequence_motif CASCADE;
- DROP VIEW IF EXISTS experimental_feature_attribute CASCADE;
- DROP VIEW IF EXISTS score CASCADE;
- DROP VIEW IF EXISTS quality_value CASCADE;
- DROP VIEW IF EXISTS restriction_enzyme_recognition_site CASCADE;
- DROP VIEW IF EXISTS restriction_enzyme_cleavage_junction CASCADE;
- DROP VIEW IF EXISTS five_prime_restriction_enzyme_junction CASCADE;
- DROP VIEW IF EXISTS three_prime_restriction_enzyme_junction CASCADE;
- DROP VIEW IF EXISTS blunt_end_restriction_enzyme_cleavage_site CASCADE;
- DROP VIEW IF EXISTS sticky_end_restriction_enzyme_cleavage_site CASCADE;
- DROP VIEW IF EXISTS blunt_end_restriction_enzyme_cleavage_junction CASCADE;
- DROP VIEW IF EXISTS single_strand_restriction_enzyme_cleavage_site CASCADE;
- DROP VIEW IF EXISTS restriction_enzyme_single_strand_overhang CASCADE;
- DROP VIEW IF EXISTS experimentally_defined_binding_region CASCADE;
- DROP VIEW IF EXISTS chip_seq_region CASCADE;
- DROP VIEW IF EXISTS aspe_primer CASCADE;
- DROP VIEW IF EXISTS dcaps_primer CASCADE;
- DROP VIEW IF EXISTS histone_modification CASCADE;
- DROP VIEW IF EXISTS histone_methylation_site CASCADE;
- DROP VIEW IF EXISTS histone_acetylation_site CASCADE;
- DROP VIEW IF EXISTS h3k9_acetylation_site CASCADE;
- DROP VIEW IF EXISTS h3k14_acetylation_site CASCADE;
- DROP VIEW IF EXISTS h3k4_monomethylation_site CASCADE;
- DROP VIEW IF EXISTS h3k4_trimethylation CASCADE;
- DROP VIEW IF EXISTS h3k9_trimethylation_site CASCADE;
- DROP VIEW IF EXISTS h3k27_monomethylation_site CASCADE;
- DROP VIEW IF EXISTS h3k27_trimethylation_site CASCADE;
- DROP VIEW IF EXISTS h3k79_monomethylation_site CASCADE;
- DROP VIEW IF EXISTS h3k79_dimethylation_site CASCADE;
- DROP VIEW IF EXISTS h3k79_trimethylation_site CASCADE;
- DROP VIEW IF EXISTS h4k20_monomethylation_site CASCADE;
- DROP VIEW IF EXISTS h2bk5_monomethylation_site CASCADE;
- DROP VIEW IF EXISTS isre CASCADE;
- DROP VIEW IF EXISTS histone_ubiqitination_site CASCADE;
- DROP VIEW IF EXISTS h2b_ubiquitination_site CASCADE;
- DROP VIEW IF EXISTS h3k18_acetylation_site CASCADE;
- DROP VIEW IF EXISTS h3k23_acylation_site CASCADE;
- DROP VIEW IF EXISTS epigenetically_modified_region CASCADE;
- DROP VIEW IF EXISTS h3k27_acylation_site CASCADE;
- DROP VIEW IF EXISTS h3k36_monomethylation_site CASCADE;
- DROP VIEW IF EXISTS h3k36_dimethylation_site CASCADE;
- DROP VIEW IF EXISTS h3k36_trimethylation_site CASCADE;
- DROP VIEW IF EXISTS h3k4_dimethylation_site CASCADE;
- DROP VIEW IF EXISTS h3k27_dimethylation_site CASCADE;
- DROP VIEW IF EXISTS h3k9_monomethylation_site CASCADE;
- DROP VIEW IF EXISTS h3k9_dimethylation_site CASCADE;
- DROP VIEW IF EXISTS h4k16_acylation_site CASCADE;
- DROP VIEW IF EXISTS h4k5_acylation_site CASCADE;
- DROP VIEW IF EXISTS h4k8_acylation_site CASCADE;
- DROP VIEW IF EXISTS h3k27_methylation_site CASCADE;
- DROP VIEW IF EXISTS h3k36_methylation_site CASCADE;
- DROP VIEW IF EXISTS h3k4_methylation_site CASCADE;
- DROP VIEW IF EXISTS h3k79_methylation_site CASCADE;
- DROP VIEW IF EXISTS h3k9_methylation_site CASCADE;
- DROP VIEW IF EXISTS histone_acylation_region CASCADE;
- DROP VIEW IF EXISTS h4k_acylation_region CASCADE;
- DROP VIEW IF EXISTS gene_with_non_canonical_start_codon CASCADE;
- DROP VIEW IF EXISTS gene_with_start_codon_cug CASCADE;
- DROP VIEW IF EXISTS pseudogenic_gene_segment CASCADE;
- DROP VIEW IF EXISTS copy_number_gain CASCADE;
- DROP VIEW IF EXISTS copy_number_loss CASCADE;
- DROP VIEW IF EXISTS upd CASCADE;
- DROP VIEW IF EXISTS maternal_uniparental_disomy CASCADE;
- DROP VIEW IF EXISTS paternal_uniparental_disomy CASCADE;
- DROP VIEW IF EXISTS open_chromatin_region CASCADE;
- DROP VIEW IF EXISTS sl3_acceptor_site CASCADE;
- DROP VIEW IF EXISTS sl4_acceptor_site CASCADE;
- DROP VIEW IF EXISTS sl5_acceptor_site CASCADE;
- DROP VIEW IF EXISTS sl6_acceptor_site CASCADE;
- DROP VIEW IF EXISTS sl7_acceptor_site CASCADE;
- DROP VIEW IF EXISTS sl8_acceptor_site CASCADE;
- DROP VIEW IF EXISTS sl9_acceptor_site CASCADE;
- DROP VIEW IF EXISTS sl10_accceptor_site CASCADE;
- DROP VIEW IF EXISTS sl11_acceptor_site CASCADE;
- DROP VIEW IF EXISTS sl12_acceptor_site CASCADE;
- DROP VIEW IF EXISTS duplicated_pseudogene CASCADE;
- DROP VIEW IF EXISTS unitary_pseudogene CASCADE;
- DROP VIEW IF EXISTS non_processed_pseudogene CASCADE;
- DROP VIEW IF EXISTS variant_quality CASCADE;
- DROP VIEW IF EXISTS variant_origin CASCADE;
- DROP VIEW IF EXISTS variant_frequency CASCADE;
- DROP VIEW IF EXISTS unique_variant CASCADE;
- DROP VIEW IF EXISTS rare_variant CASCADE;
- DROP VIEW IF EXISTS polymorphic_variant CASCADE;
- DROP VIEW IF EXISTS common_variant CASCADE;
- DROP VIEW IF EXISTS fixed_variant CASCADE;
- DROP VIEW IF EXISTS variant_phenotype CASCADE;
- DROP VIEW IF EXISTS benign_variant CASCADE;
- DROP VIEW IF EXISTS disease_associated_variant CASCADE;
- DROP VIEW IF EXISTS disease_causing_variant CASCADE;
- DROP VIEW IF EXISTS lethal_variant CASCADE;
- DROP VIEW IF EXISTS quantitative_variant CASCADE;
- DROP VIEW IF EXISTS maternal_variant CASCADE;
- DROP VIEW IF EXISTS paternal_variant CASCADE;
- DROP VIEW IF EXISTS somatic_variant CASCADE;
- DROP VIEW IF EXISTS germline_variant CASCADE;
- DROP VIEW IF EXISTS pedigree_specific_variant CASCADE;
- DROP VIEW IF EXISTS population_specific_variant CASCADE;
- DROP VIEW IF EXISTS de_novo_variant CASCADE;
- DROP VIEW IF EXISTS tf_binding_site_variant CASCADE;
- DROP VIEW IF EXISTS missense_codon CASCADE;
- DROP VIEW IF EXISTS complex_structural_alteration CASCADE;
- DROP VIEW IF EXISTS structural_alteration CASCADE;
- DROP VIEW IF EXISTS loss_of_heterozygosity CASCADE;
- DROP VIEW IF EXISTS splice_donor_5th_base_variant CASCADE;
- DROP VIEW IF EXISTS u_box CASCADE;
- DROP VIEW IF EXISTS mating_type_region CASCADE;
- DROP VIEW IF EXISTS paired_end_fragment CASCADE;
- DROP VIEW IF EXISTS exon_variant CASCADE;
- DROP VIEW IF EXISTS non_coding_exon_variant CASCADE;
- DROP VIEW IF EXISTS clone_end CASCADE;
- DROP VIEW IF EXISTS point_centromere CASCADE;
- DROP VIEW IF EXISTS regional_centromere CASCADE;
- DROP VIEW IF EXISTS regional_centromere_central_core CASCADE;
- DROP VIEW IF EXISTS centromeric_repeat CASCADE;
- DROP VIEW IF EXISTS regional_centromere_inner_repeat_region CASCADE;
- DROP VIEW IF EXISTS regional_centromere_outer_repeat_region CASCADE;
- DROP VIEW IF EXISTS tasirna CASCADE;
- DROP VIEW IF EXISTS tasirna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS increased_polyadenylation_variant CASCADE;
- DROP VIEW IF EXISTS decreased_polyadenylation_variant CASCADE;
- DROP VIEW IF EXISTS regulatory_region CASCADE;
- DROP VIEW IF EXISTS u14_snorna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS methylation_guide_snorna CASCADE;
- DROP VIEW IF EXISTS rrna_cleavage_rna CASCADE;
- DROP VIEW IF EXISTS exon_of_single_exon_gene CASCADE;
- DROP VIEW IF EXISTS cassette_array_member CASCADE;
- DROP VIEW IF EXISTS gene_cassette_member CASCADE;
- DROP VIEW IF EXISTS gene_subarray_member CASCADE;
- DROP VIEW IF EXISTS primer_binding_site CASCADE;
- DROP VIEW IF EXISTS gene_array CASCADE;
- DROP VIEW IF EXISTS gene_subarray CASCADE;
- DROP VIEW IF EXISTS gene_cassette CASCADE;
- DROP VIEW IF EXISTS gene_cassette_array CASCADE;
- DROP VIEW IF EXISTS gene_group CASCADE;
- DROP VIEW IF EXISTS selenocysteine_trna_primary_transcript CASCADE;
- DROP VIEW IF EXISTS selenocysteinyl_trna CASCADE;
- DROP VIEW IF EXISTS syntenic_region CASCADE;
- DROP VIEW IF EXISTS biochemical_region_of_peptide CASCADE;
- DROP VIEW IF EXISTS molecular_contact_region CASCADE;
- DROP VIEW IF EXISTS intrinsically_unstructured_polypeptide_region CASCADE;
- DROP VIEW IF EXISTS catmat_left_handed_three CASCADE;
- DROP VIEW IF EXISTS catmat_left_handed_four CASCADE;
- DROP VIEW IF EXISTS catmat_right_handed_three CASCADE;
- DROP VIEW IF EXISTS catmat_right_handed_four CASCADE;
- DROP VIEW IF EXISTS alpha_beta_motif CASCADE;
- DROP VIEW IF EXISTS lipoprotein_signal_peptide CASCADE;
- DROP VIEW IF EXISTS no_output CASCADE;
- DROP VIEW IF EXISTS cleaved_peptide_region CASCADE;
- DROP VIEW IF EXISTS peptide_coil CASCADE;
- DROP VIEW IF EXISTS hydrophobic_region_of_peptide CASCADE;
- DROP VIEW IF EXISTS n_terminal_region CASCADE;
- DROP VIEW IF EXISTS c_terminal_region CASCADE;
- DROP VIEW IF EXISTS central_hydrophobic_region_of_signal_peptide CASCADE;
- DROP VIEW IF EXISTS polypeptide_conserved_motif CASCADE;
- DROP VIEW IF EXISTS polypeptide_binding_motif CASCADE;
- DROP VIEW IF EXISTS polypeptide_catalytic_motif CASCADE;
- DROP VIEW IF EXISTS polypeptide_dna_contact CASCADE;
- DROP VIEW IF EXISTS polypeptide_conserved_region CASCADE;
- DROP VIEW IF EXISTS substitution CASCADE;
- DROP VIEW IF EXISTS complex_substitution CASCADE;
- DROP VIEW IF EXISTS point_mutation CASCADE;
- DROP VIEW IF EXISTS transition CASCADE;
- DROP VIEW IF EXISTS pyrimidine_transition CASCADE;
- DROP VIEW IF EXISTS c_to_t_transition CASCADE;
- DROP VIEW IF EXISTS c_to_t_transition_at_pcpg_site CASCADE;
- DROP VIEW IF EXISTS t_to_c_transition CASCADE;
- DROP VIEW IF EXISTS purine_transition CASCADE;
- DROP VIEW IF EXISTS a_to_g_transition CASCADE;
- DROP VIEW IF EXISTS g_to_a_transition CASCADE;
- DROP VIEW IF EXISTS transversion CASCADE;
- DROP VIEW IF EXISTS pyrimidine_to_purine_transversion CASCADE;
- DROP VIEW IF EXISTS c_to_a_transversion CASCADE;
- DROP VIEW IF EXISTS c_to_g_transversion CASCADE;
- DROP VIEW IF EXISTS t_to_a_transversion CASCADE;
- DROP VIEW IF EXISTS t_to_g_transversion CASCADE;
- DROP VIEW IF EXISTS purine_to_pyrimidine_transversion CASCADE;
- DROP VIEW IF EXISTS a_to_c_transversion CASCADE;
- DROP VIEW IF EXISTS a_to_t_transversion CASCADE;
- DROP VIEW IF EXISTS g_to_c_transversion CASCADE;
- DROP VIEW IF EXISTS g_to_t_transversion CASCADE;
- DROP VIEW IF EXISTS intrachromosomal_mutation CASCADE;
- DROP VIEW IF EXISTS chromosomal_deletion CASCADE;
- DROP VIEW IF EXISTS chromosomal_inversion CASCADE;
- DROP VIEW IF EXISTS interchromosomal_mutation CASCADE;
- DROP VIEW IF EXISTS indel CASCADE;
- DROP VIEW IF EXISTS duplication CASCADE;
- DROP VIEW IF EXISTS inversion CASCADE;
- DROP VIEW IF EXISTS chromosomal_duplication CASCADE;
- DROP VIEW IF EXISTS intrachromosomal_duplication CASCADE;
- DROP VIEW IF EXISTS direct_tandem_duplication CASCADE;
- DROP VIEW IF EXISTS inverted_tandem_duplication CASCADE;
- DROP VIEW IF EXISTS intrachromosomal_transposition CASCADE;
- DROP VIEW IF EXISTS compound_chromosome CASCADE;
- DROP VIEW IF EXISTS robertsonian_fusion CASCADE;
- DROP VIEW IF EXISTS chromosomal_translocation CASCADE;
- DROP VIEW IF EXISTS ring_chromosome CASCADE;
- DROP VIEW IF EXISTS pericentric_inversion CASCADE;
- DROP VIEW IF EXISTS paracentric_inversion CASCADE;
- DROP VIEW IF EXISTS reciprocal_chromosomal_translocation CASCADE;
- DROP VIEW IF EXISTS autosynaptic_chromosome CASCADE;
- DROP VIEW IF EXISTS homo_compound_chromosome CASCADE;
- DROP VIEW IF EXISTS hetero_compound_chromosome CASCADE;
- DROP VIEW IF EXISTS chromosome_fission CASCADE;
- DROP VIEW IF EXISTS dexstrosynaptic_chromosome CASCADE;
- DROP VIEW IF EXISTS laevosynaptic_chromosome CASCADE;
- DROP VIEW IF EXISTS free_duplication CASCADE;
- DROP VIEW IF EXISTS free_ring_duplication CASCADE;
- DROP VIEW IF EXISTS complex_chromosomal_mutation CASCADE;
- DROP VIEW IF EXISTS deficient_translocation CASCADE;
- DROP VIEW IF EXISTS inversion_cum_translocation CASCADE;
- DROP VIEW IF EXISTS bipartite_duplication CASCADE;
- DROP VIEW IF EXISTS cyclic_translocation CASCADE;
- DROP VIEW IF EXISTS bipartite_inversion CASCADE;
- DROP VIEW IF EXISTS uninvert_insert_dup CASCADE;
- DROP VIEW IF EXISTS inverted_insertional_duplication CASCADE;
- DROP VIEW IF EXISTS insertional_duplication CASCADE;
- DROP VIEW IF EXISTS interchromosomal_transposition CASCADE;
- DROP VIEW IF EXISTS invert_inter_transposition CASCADE;
- DROP VIEW IF EXISTS uninvert_inter_transposition CASCADE;
- DROP VIEW IF EXISTS invert_intra_transposition CASCADE;
- DROP VIEW IF EXISTS uninvert_intra_transposition CASCADE;
- DROP VIEW IF EXISTS unorient_insert_dup CASCADE;
- DROP VIEW IF EXISTS unoriented_interchromosomal_transposition CASCADE;
- DROP VIEW IF EXISTS unoriented_intrachromosomal_transposition CASCADE;
- DROP VIEW IF EXISTS uncharacterised_chromosomal_mutation CASCADE;
- DROP VIEW IF EXISTS deficient_inversion CASCADE;
- DROP VIEW IF EXISTS tandem_duplication CASCADE;
- DROP VIEW IF EXISTS partially_characterised_chromosomal_mutation CASCADE;
- DROP VIEW IF EXISTS chromosome_number_variation CASCADE;
- DROP VIEW IF EXISTS chromosome_structure_variation CASCADE;
- DROP VIEW IF EXISTS alternatively_spliced_transcript CASCADE;
- DROP VIEW IF EXISTS encodes_1_polypeptide CASCADE;
- DROP VIEW IF EXISTS encodes_greater_than_1_polypeptide CASCADE;
- DROP VIEW IF EXISTS encodes_different_polypeptides_different_stop CASCADE;
- DROP VIEW IF EXISTS encodes_overlapping_peptides_different_start CASCADE;
- DROP VIEW IF EXISTS encodes_disjoint_polypeptides CASCADE;
- DROP VIEW IF EXISTS encodes_overlapping_polypeptides_different_start_and_stop CASCADE;
- DROP VIEW IF EXISTS encodes_overlapping_peptides CASCADE;
- DROP VIEW IF EXISTS cryptogene CASCADE;
- DROP VIEW IF EXISTS dicistronic_primary_transcript CASCADE;
- DROP VIEW IF EXISTS member_of_regulon CASCADE;
- DROP VIEW IF EXISTS cds_independently_known CASCADE;
- DROP VIEW IF EXISTS orphan_cds CASCADE;
- DROP VIEW IF EXISTS cds_supported_by_domain_match_data CASCADE;
- DROP VIEW IF EXISTS cds_supported_by_sequence_similarity_data CASCADE;
- DROP VIEW IF EXISTS cds_predicted CASCADE;
- DROP VIEW IF EXISTS cds_supported_by_est_or_cdna_data CASCADE;
- DROP VIEW IF EXISTS internal_shine_dalgarno_sequence CASCADE;
- DROP VIEW IF EXISTS recoded_mrna CASCADE;
- DROP VIEW IF EXISTS minus_1_translationally_frameshifted CASCADE;
- DROP VIEW IF EXISTS plus_1_translationally_frameshifted CASCADE;
- DROP VIEW IF EXISTS mrna_recoded_by_translational_bypass CASCADE;
- DROP VIEW IF EXISTS mrna_recoded_by_codon_redefinition CASCADE;
- DROP VIEW IF EXISTS recoding_stimulatory_region CASCADE;
- DROP VIEW IF EXISTS four_bp_start_codon CASCADE;
- DROP VIEW IF EXISTS archaeal_intron CASCADE;
- DROP VIEW IF EXISTS trna_intron CASCADE;
- DROP VIEW IF EXISTS ctg_start_codon CASCADE;
- DROP VIEW IF EXISTS secis_element CASCADE;
- DROP VIEW IF EXISTS retron CASCADE;
- DROP VIEW IF EXISTS three_prime_recoding_site CASCADE;
- DROP VIEW IF EXISTS three_prime_stem_loop_structure CASCADE;
- DROP VIEW IF EXISTS five_prime_recoding_site CASCADE;
- DROP VIEW IF EXISTS flanking_three_prime_quadruplet_recoding_signal CASCADE;
- DROP VIEW IF EXISTS uag_stop_codon_signal CASCADE;
- DROP VIEW IF EXISTS uaa_stop_codon_signal CASCADE;
- DROP VIEW IF EXISTS regulon CASCADE;
- DROP VIEW IF EXISTS uga_stop_codon_signal CASCADE;
- DROP VIEW IF EXISTS three_prime_repeat_recoding_signal CASCADE;
- DROP VIEW IF EXISTS distant_three_prime_recoding_signal CASCADE;
- DROP VIEW IF EXISTS stop_codon_signal CASCADE;
- DROP VIEW IF EXISTS databank_entry CASCADE;
- DROP VIEW IF EXISTS gene_segment CASCADE;
- DROP VIEW IF EXISTS protein_coding_gene CASCADE;
- DROP VIEW IF EXISTS intronloc_view CASCADE;
- DROP VIEW IF EXISTS intron_combined_view CASCADE;
- DROP VIEW IF EXISTS gffatts CASCADE;
- DROP VIEW IF EXISTS gff3atts CASCADE;
- DROP VIEW IF EXISTS gff3view CASCADE;
- DROP VIEW IF EXISTS all_feature_names CASCADE;
- DROP VIEW IF EXISTS f_loc CASCADE;
- DROP VIEW IF EXISTS dfeatureloc CASCADE;
- DROP VIEW IF EXISTS f_type CASCADE;
- DROP VIEW IF EXISTS fnr_type CASCADE;
- DROP VIEW IF EXISTS fp_key CASCADE;
- DROP VIEW IF EXISTS featureset_meets CASCADE;
- DROP VIEW IF EXISTS feature_meets CASCADE;
- DROP VIEW IF EXISTS feature_meets_on_same_strand CASCADE;
- DROP VIEW IF EXISTS feature_disjoint CASCADE;
- DROP VIEW IF EXISTS feature_union CASCADE;
- DROP VIEW IF EXISTS feature_intersection CASCADE;
- DROP VIEW IF EXISTS feature_difference CASCADE;
- DROP VIEW IF EXISTS feature_distance CASCADE;
- DROP VIEW IF EXISTS feature_contains CASCADE;
- --
- -- Name: feature_by_fx_type; Type: TYPE; Schema: public; Owner: chado
- --
- ALTER TYPE feature_by_fx_type ALTER ATTRIBUTE feature_id SET DATA TYPE bigint;
- --
- -- Name: soi_type; Type: TYPE; Schema: public; Owner: chado
- --
- ALTER TYPE soi_type
- ALTER ATTRIBUTE type_id TYPE bigint,
- ALTER ATTRIBUTE subject_id TYPE bigint,
- ALTER ATTRIBUTE object_id TYPE bigint;
- --
- -- Name: create_point(bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS create_point(integer, integer);
- CREATE OR REPLACE FUNCTION create_point(bigint, bigint) RETURNS point
- LANGUAGE sql
- AS $_$SELECT point ($1, $2)$_$;
-
-
- --
- -- Name: boxrange(bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP INDEX bingroup_boxrange;
- DROP INDEX binloc_boxrange;
- DROP FUNCTION IF EXISTS boxrange(integer, integer);
- CREATE OR REPLACE FUNCTION boxrange(bigint, bigint) RETURNS box
- LANGUAGE sql IMMUTABLE
- AS $_$SELECT box (create_point(CAST(0 AS bigint), $1), create_point($2,500000000))$_$;
- --
- -- Name: boxrange(bigint, bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP INDEX binloc_boxrange_src;
- DROP FUNCTION IF EXISTS boxrange(integer, integer, integer);
- CREATE OR REPLACE FUNCTION boxrange(bigint, bigint, bigint) RETURNS box
- LANGUAGE sql IMMUTABLE
- AS $_$SELECT box (create_point($1, $2), create_point($1,$3))$_$;
-
- SET search_path=frange,public,pg_catalog;
- --
- -- Name: featuregroup; Type: TABLE; Schema: frange; Owner: chado; Tablespace:
- --
- ALTER TABLE featuregroup
- ALTER featuregroup_id TYPE bigint,
- ALTER subject_id TYPE bigint,
- ALTER object_id TYPE bigint,
- ALTER group_id TYPE bigint,
- ALTER srcfeature_id TYPE bigint,
- ALTER fmin TYPE bigint,
- ALTER fmax TYPE bigint;
- CREATE INDEX bingroup_boxrange ON featuregroup USING RTREE (boxrange(fmin, fmax)) WHERE is_root = 1;
- --
- -- Name: _fill_featuregroup(bigint, bigint); Type: FUNCTION; Schema: frange; Owner: chado
- --
- DROP FUNCTION IF EXISTS _fill_featuregroup(integer, integer);
- CREATE OR REPLACE FUNCTION _fill_featuregroup(bigint, bigint) RETURNS integer
- LANGUAGE plpgsql
- AS $_$
- DECLARE
- groupid alias for $1;
- parentid alias for $2;
- g featuregroup%ROWTYPE;
- BEGIN
- FOR g IN
- SELECT DISTINCT 0, fr.subject_id, fr.object_id, groupid, fl.srcfeature_id, fl.fmin, fl.fmax, fl.strand, 0
- FROM feature_relationship AS fr,
- featureloc AS fl
- WHERE fr.object_id = parentid
- AND fr.subject_id = fl.feature_id
- LOOP
- INSERT INTO featuregroup
- (subject_id, object_id, group_id, srcfeature_id, fmin, fmax, strand, is_root)
- VALUES
- (g.subject_id, g.object_id, g.group_id, g.srcfeature_id, g.fmin, g.fmax, g.strand, 0);
- PERFORM _fill_featuregroup(groupid,g.subject_id);
- END LOOP;
- RETURN 1;
- END;
- $_$;
- --
- -- Name: fill_featuregroup(); Type: FUNCTION; Schema: frange; Owner: chado
- --
- DROP FUNCTION IF EXISTS fill_featuregroup();
- CREATE OR REPLACE FUNCTION fill_featuregroup() RETURNS integer
- LANGUAGE plpgsql
- AS $$
- DECLARE
- p featuregroup%ROWTYPE;
- l featureloc%ROWTYPE;
- isa bigint;
- -- c int; the c variable isnt used
- BEGIN
- TRUNCATE featuregroup;
- SELECT INTO isa cvterm_id FROM cvterm WHERE (name = 'isa' OR name = 'is_a');
- -- Recursion is the biggest performance killer for this function.
- -- We can dodge the first round of recursion using the "fr1 / GROUP BY" approach.
- -- Luckily, most feature graphs are only 2 levels deep, so most recursion is
- -- avoidable.
- RAISE NOTICE 'Loading root and singleton features.';
- FOR p IN
- SELECT DISTINCT 0, f.feature_id, f.feature_id, f.feature_id, srcfeature_id, fmin, fmax, strand, 1
- FROM feature AS f
- LEFT JOIN feature_relationship ON (f.feature_id = object_id)
- LEFT JOIN featureloc ON (f.feature_id = featureloc.feature_id)
- WHERE f.feature_id NOT IN ( SELECT subject_id FROM feature_relationship )
- AND srcfeature_id IS NOT NULL
- LOOP
- INSERT INTO featuregroup
- (subject_id, object_id, group_id, srcfeature_id, fmin, fmax, strand, is_root)
- VALUES
- (p.object_id, p.object_id, p.object_id, p.srcfeature_id, p.fmin, p.fmax, p.strand, 1);
- END LOOP;
- RAISE NOTICE 'Loading child features. If your database contains grandchild';
- RAISE NOTICE 'features, they will be loaded recursively and may take a long time.';
- FOR p IN
- SELECT DISTINCT 0, fr0.subject_id, fr0.object_id, fr0.object_id, fl.srcfeature_id, fl.fmin, fl.fmax, fl.strand, count(fr1.subject_id)
- FROM feature_relationship AS fr0
- LEFT JOIN feature_relationship AS fr1 ON ( fr0.subject_id = fr1.object_id),
- featureloc AS fl
- WHERE fr0.subject_id = fl.feature_id
- AND fr0.object_id IN (
- SELECT f.feature_id
- FROM feature AS f
- LEFT JOIN feature_relationship ON (f.feature_id = object_id)
- LEFT JOIN featureloc ON (f.feature_id = featureloc.feature_id)
- WHERE f.feature_id NOT IN ( SELECT subject_id FROM feature_relationship )
- AND f.feature_id IN ( SELECT object_id FROM feature_relationship )
- AND srcfeature_id IS NOT NULL
- )
- GROUP BY fr0.subject_id, fr0.object_id, fl.srcfeature_id, fl.fmin, fl.fmax, fl.strand
- LOOP
- INSERT INTO featuregroup
- (subject_id, object_id, group_id, srcfeature_id, fmin, fmax, strand, is_root)
- VALUES
- (p.subject_id, p.object_id, p.object_id, p.srcfeature_id, p.fmin, p.fmax, p.strand, 0);
- IF ( p.is_root > 0 ) THEN
- PERFORM _fill_featuregroup(p.subject_id,p.subject_id);
- END IF;
- END LOOP;
- RETURN 1;
- END;
- $$;
- SET search_path=public,frange,pg_catalog;
- --
- -- Name: boxquery(bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS boxquery(integer, integer);
- CREATE OR REPLACE FUNCTION boxquery(bigint, bigint) RETURNS box
- LANGUAGE sql IMMUTABLE
- AS $_$SELECT box (create_point($1, $2), create_point($1, $2))$_$;
- --
- -- Name: boxquery(bigint, bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS boxquery(integer, integer, integer);
- CREATE OR REPLACE FUNCTION boxquery(bigint, bigint, bigint) RETURNS box
- LANGUAGE sql IMMUTABLE
- AS $_$SELECT box (create_point($1, $2), create_point($1, $3))$_$;
- SET search_path=frange,public,pg_catalog;
- --
- -- Name: groupoverlaps(bigint, bigint); Type: FUNCTION; Schema: frange; Owner: chado
- --
- DROP FUNCTION IF EXISTS groupoverlaps(integer, integer);
- CREATE OR REPLACE FUNCTION groupoverlaps(bigint, bigint) RETURNS SETOF featuregroup
- LANGUAGE sql
- AS $_$
- SELECT *
- FROM featuregroup
- WHERE is_root = 1
- AND boxquery($1, $2) @ boxrange(fmin,fmax)
- $_$;
- --
- -- Name: groupoverlaps(bigint[], bigint[], character varying[]); Type: FUNCTION; Schema: frange; Owner: chado
- --
- DROP FUNCTION IF EXISTS groupoverlaps(integer[], integer[], character varying[]);
- CREATE OR REPLACE FUNCTION groupoverlaps(bigint[], bigint[], character varying[]) RETURNS SETOF featuregroup
- LANGUAGE plpgsql
- AS $_$
- DECLARE
- mins alias for $1;
- maxs alias for $2;
- srcs alias for $3;
- f featuregroup%ROWTYPE;
- i int;
- s int;
- BEGIN
- i := 1;
- FOR i in array_lower( mins, 1 ) .. array_upper( mins, 1 ) LOOP
- SELECT INTO s feature_id FROM feature WHERE uniquename = srcs[i];
- FOR f IN
- SELECT *
- FROM featuregroup WHERE group_id IN (
- SELECT group_id FROM featuregroup
- WHERE (srcfeature_id = s OR srcfeature_id IS NULL)
- AND group_id IN (
- SELECT group_id FROM groupoverlaps( mins[i], maxs[i] )
- WHERE srcfeature_id = s
- )
- )
- LOOP
- RETURN NEXT f;
- END LOOP;
- END LOOP;
- RETURN;
- END;
- $_$;
- --
- -- Name: groupoverlaps(bigint, bigint, character varying); Type: FUNCTION; Schema: frange; Owner: chado
- --
- DROP FUNCTION IF EXISTS groupoverlaps(integer, integer, character varying);
- CREATE OR REPLACE FUNCTION groupoverlaps(bigint, bigint, character varying) RETURNS SETOF featuregroup
- LANGUAGE sql
- AS $_$
- SELECT g2.*
- FROM featuregroup g1,
- featuregroup g2
- WHERE g1.is_root = 1
- AND ( g1.srcfeature_id = g2.srcfeature_id OR g2.srcfeature_id IS NULL )
- AND g1.group_id = g2.group_id
- AND g1.srcfeature_id = (SELECT feature_id FROM feature WHERE uniquename = $3)
- AND boxquery($1, $2) @ boxrange(g1.fmin,g2.fmax)
- $_$;
-
- --
- -- Name: groupcontains(bigint[], bigint[], character varying[]); Type: FUNCTION; Schema: frange; Owner: chado
- --
- DROP FUNCTION IF EXISTS groupcontains(integer[], integer[], character varying[]);
- CREATE OR REPLACE FUNCTION groupcontains(bigint[], bigint[], character varying[]) RETURNS SETOF featuregroup
- LANGUAGE plpgsql
- AS $_$
- DECLARE
- mins alias for $1;
- maxs alias for $2;
- srcs alias for $3;
- f featuregroup%ROWTYPE;
- i int;
- s int;
- BEGIN
- i := 1;
- FOR i in array_lower( mins, 1 ) .. array_upper( mins, 1 ) LOOP
- SELECT INTO s feature_id FROM feature WHERE uniquename = srcs[i];
- FOR f IN
- SELECT *
- FROM featuregroup WHERE group_id IN (
- SELECT group_id FROM featuregroup
- WHERE (srcfeature_id = s OR srcfeature_id IS NULL)
- AND fmin <= mins[i]
- AND fmax >= maxs[i]
- AND group_id IN (
- SELECT group_id FROM groupoverlaps( mins[i], maxs[i] )
- WHERE srcfeature_id = s
- )
- )
- LOOP
- RETURN NEXT f;
- END LOOP;
- END LOOP;
- RETURN;
- END;
- $_$;
- --
- -- Name: groupcontains(bigint, bigint, character varying); Type: FUNCTION; Schema: frange; Owner: chado
- --
- DROP FUNCTION IF EXISTS groupcontains(integer, integer, character varying);
- CREATE OR REPLACE FUNCTION groupcontains(bigint, bigint, character varying) RETURNS SETOF featuregroup
- LANGUAGE sql
- AS $_$
- SELECT *
- FROM groupoverlaps($1,$2,$3)
- WHERE fmin <= $1 AND fmax >= $2
- $_$;
- --
- -- Name: groupidentical(bigint[], bigint[], character varying[]); Type: FUNCTION; Schema: frange; Owner: chado
- --
- DROP FUNCTION IF EXISTS groupidentical(integer[], integer[], character varying[]);
- CREATE OR REPLACE FUNCTION groupidentical(bigint[], bigint[], character varying[]) RETURNS SETOF featuregroup
- LANGUAGE plpgsql
- AS $_$
- DECLARE
- mins alias for $1;
- maxs alias for $2;
- srcs alias for $3;
- f featuregroup%ROWTYPE;
- i int;
- s int;
- BEGIN
- i := 1;
- FOR i in array_lower( mins, 1 ) .. array_upper( mins, 1 ) LOOP
- SELECT INTO s feature_id FROM feature WHERE uniquename = srcs[i];
- FOR f IN
- SELECT *
- FROM featuregroup WHERE group_id IN (
- SELECT group_id FROM featuregroup
- WHERE (srcfeature_id = s OR srcfeature_id IS NULL)
- AND fmin = mins[i]
- AND fmax = maxs[i]
- AND group_id IN (
- SELECT group_id FROM groupoverlaps( mins[i], maxs[i] )
- WHERE srcfeature_id = s
- )
- )
- LOOP
- RETURN NEXT f;
- END LOOP;
- END LOOP;
- RETURN;
- END;
- $_$;
- --
- -- Name: groupidentical(bigint, bigint, character varying); Type: FUNCTION; Schema: frange; Owner: chado
- --
- DROP FUNCTION IF EXISTS groupidentical(integer, integer, character varying);
- CREATE OR REPLACE FUNCTION groupidentical(bigint, bigint, character varying) RETURNS SETOF featuregroup
- LANGUAGE sql
- AS $_$
- SELECT *
- FROM groupoverlaps($1,$2,$3)
- WHERE fmin = $1 AND fmax = $2
- $_$;
- --
- -- Name: groupinside(bigint[], bigint[], character varying[]); Type: FUNCTION; Schema: frange; Owner: chado
- --
- DROP FUNCTION IF EXISTS groupinside(integer[], integer[], character varying[]);
- CREATE OR REPLACE FUNCTION groupinside(bigint[], bigint[], character varying[]) RETURNS SETOF featuregroup
- LANGUAGE plpgsql
- AS $_$
- DECLARE
- mins alias for $1;
- maxs alias for $2;
- srcs alias for $3;
- f featuregroup%ROWTYPE;
- i int;
- s int;
- BEGIN
- i := 1;
- FOR i in array_lower( mins, 1 ) .. array_upper( mins, 1 ) LOOP
- SELECT INTO s feature_id FROM feature WHERE uniquename = srcs[i];
- FOR f IN
- SELECT *
- FROM featuregroup WHERE group_id IN (
- SELECT group_id FROM featuregroup
- WHERE (srcfeature_id = s OR srcfeature_id IS NULL)
- AND fmin >= mins[i]
- AND fmax <= maxs[i]
- AND group_id IN (
- SELECT group_id FROM groupoverlaps( mins[i], maxs[i] )
- WHERE srcfeature_id = s
- )
- )
- LOOP
- RETURN NEXT f;
- END LOOP;
- END LOOP;
- RETURN;
- END;
- $_$;
- --
- -- Name: groupinside(bigint, bigint, character varying); Type: FUNCTION; Schema: frange; Owner: chado
- --
- DROP FUNCTION IF EXISTS groupinside(integer, integer, character varying);
- CREATE OR REPLACE FUNCTION groupinside(bigint, bigint, character varying) RETURNS SETOF featuregroup
- LANGUAGE sql
- AS $_$
- SELECT *
- FROM groupoverlaps($1,$2,$3)
- WHERE fmin >= $1 AND fmax <= $2
- $_$;
- SET search_path = public, frange,pg_catalog;
- --
- -- Name: cvtermpath; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cvtermpath
- ALTER cvtermpath_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER subject_id TYPE bigint,
- ALTER object_id TYPE bigint,
- ALTER cv_id TYPE bigint;
-
- --
- -- Name: create_soi(); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS create_soi();
- CREATE OR REPLACE FUNCTION create_soi() RETURNS integer
- LANGUAGE plpgsql
- AS $$
- DECLARE
- parent soi_type%ROWTYPE;
- isa_id cvterm.cvterm_id%TYPE;
- soi_term TEXT := 'soi';
- soi_def TEXT := 'ontology of SO feature instantiated in database';
- soi_cvid bigint;
- soiterm_id bigint;
- pcount INTEGER;
- count INTEGER := 0;
- cquery TEXT;
- BEGIN
- SELECT INTO isa_id cvterm_id FROM cvterm WHERE name = 'isa';
- SELECT INTO soi_cvid cv_id FROM cv WHERE name = soi_term;
- IF (soi_cvid > 0) THEN
- DELETE FROM cvtermpath WHERE cv_id = soi_cvid;
- DELETE FROM cvterm WHERE cv_id = soi_cvid;
- ELSE
- INSERT INTO cv (name, definition) VALUES(soi_term, soi_def);
- END IF;
- SELECT INTO soi_cvid cv_id FROM cv WHERE name = soi_term;
- INSERT INTO cvterm (name, cv_id) VALUES(soi_term, soi_cvid);
- SELECT INTO soiterm_id cvterm_id FROM cvterm WHERE name = soi_term;
- CREATE TEMP TABLE tmpcvtr (tmp_type INT, type_id bigint, subject_id bigint, object_id bigint);
- CREATE UNIQUE INDEX u_tmpcvtr ON tmpcvtr(subject_id, object_id);
- INSERT INTO tmpcvtr (tmp_type, type_id, subject_id, object_id)
- SELECT DISTINCT isa_id, soiterm_id, f.type_id, soiterm_id FROM feature f, cvterm t
- WHERE f.type_id = t.cvterm_id AND f.type_id > 0;
- EXECUTE 'select * from tmpcvtr where type_id = ' || soiterm_id || ';';
- get diagnostics pcount = row_count;
- raise notice 'all types in feature %',pcount;
- --- do it hard way, delete any child feature type from above (NOT IN clause did not work)
- FOR parent IN SELECT DISTINCT 0, t.cvterm_id, 0 FROM feature c, feature_relationship fr, cvterm t
- WHERE t.cvterm_id = c.type_id AND c.feature_id = fr.subject_id LOOP
- DELETE FROM tmpcvtr WHERE type_id = soiterm_id and object_id = soiterm_id
- AND subject_id = parent.subject_id;
- END LOOP;
- EXECUTE 'select * from tmpcvtr where type_id = ' || soiterm_id || ';';
- get diagnostics pcount = row_count;
- raise notice 'all types in feature after delete child %',pcount;
- --- create feature type relationship (store in tmpcvtr)
- CREATE TEMP TABLE tmproot (cv_id bigint not null, cvterm_id bigint not null, status INTEGER DEFAULT 0);
- cquery := 'SELECT * FROM tmproot tmp WHERE tmp.status = 0;';
- ---temp use tmpcvtr to hold instantiated SO relationship for speed
- ---use soterm_id as type_id, will delete from tmpcvtr
- ---us tmproot for this as well
- INSERT INTO tmproot (cv_id, cvterm_id, status) SELECT DISTINCT soi_cvid, c.subject_id, 0 FROM tmpcvtr c
- WHERE c.object_id = soiterm_id;
- EXECUTE cquery;
- GET DIAGNOSTICS pcount = ROW_COUNT;
- WHILE (pcount > 0) LOOP
- RAISE NOTICE 'num child temp (to be inserted) in tmpcvtr: %',pcount;
- INSERT INTO tmpcvtr (tmp_type, type_id, subject_id, object_id)
- SELECT DISTINCT fr.type_id, soiterm_id, c.type_id, p.cvterm_id FROM feature c, feature_relationship fr,
- tmproot p, feature pf, cvterm t WHERE c.feature_id = fr.subject_id AND fr.object_id = pf.feature_id
- AND p.cvterm_id = pf.type_id AND t.cvterm_id = c.type_id AND p.status = 0;
- UPDATE tmproot SET status = 1 WHERE status = 0;
- INSERT INTO tmproot (cv_id, cvterm_id, status)
- SELECT DISTINCT soi_cvid, c.type_id, 0 FROM feature c, feature_relationship fr,
- tmproot tmp, feature p, cvterm t WHERE c.feature_id = fr.subject_id AND fr.object_id = p.feature_id
- AND tmp.cvterm_id = p.type_id AND t.cvterm_id = c.type_id AND tmp.status = 1;
- UPDATE tmproot SET status = 2 WHERE status = 1;
- EXECUTE cquery;
- GET DIAGNOSTICS pcount = ROW_COUNT;
- END LOOP;
- DELETE FROM tmproot;
- ---get transitive closure for soi
- PERFORM _fill_cvtermpath4soi(soiterm_id, soi_cvid);
- DROP TABLE tmpcvtr;
- DROP TABLE tmproot;
- RETURN 1;
- END;
- $$;
- --
- -- Name: feature; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature
- ALTER feature_id TYPE bigint,
- ALTER dbxref_id TYPE bigint,
- ALTER organism_id TYPE bigint,
- ALTER seqlen TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: feature_disjoint_from(bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS feature_disjoint_from(integer);
- CREATE OR REPLACE FUNCTION feature_disjoint_from(bigint) RETURNS SETOF feature
- LANGUAGE sql
- AS $_$SELECT feature.*
- FROM feature
- INNER JOIN featureloc AS x ON (x.feature_id=feature.feature_id)
- INNER JOIN featureloc AS y ON (y.feature_id = $1)
- WHERE
- x.srcfeature_id = y.srcfeature_id AND
- ( x.fmax < y.fmin OR x.fmin > y.fmax ) $_$;
- --
- -- Name: feature_overlaps(bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS feature_overlaps(integer);
- CREATE OR REPLACE FUNCTION feature_overlaps(bigint) RETURNS SETOF feature
- LANGUAGE sql
- AS $_$SELECT feature.*
- FROM feature
- INNER JOIN featureloc AS x ON (x.feature_id=feature.feature_id)
- INNER JOIN featureloc AS y ON (y.feature_id = $1)
- WHERE
- x.srcfeature_id = y.srcfeature_id AND
- ( x.fmax >= y.fmin AND x.fmin <= y.fmax ) $_$;
- --
- -- Name: featureloc; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE FEATURELOC
- ALTER featureloc_id TYPE bigint,
- ALTER feature_id TYPE bigint,
- ALTER srcfeature_id TYPE bigint,
- ALTER fmin TYPE bigint,
- ALTER fmax TYPE bigint;
- CREATE INDEX binloc_boxrange_src ON featureloc USING RTREE (boxrange(srcfeature_id,fmin, fmax));
-
- --
- -- Name: featureloc_slice(bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS featureloc_slice(integer, integer);
- CREATE OR REPLACE FUNCTION featureloc_slice(bigint, bigint) RETURNS SETOF featureloc
- LANGUAGE sql
- AS $_$SELECT * from featureloc where boxquery($1, $2) @ boxrange(fmin,fmax)$_$;
- --
- -- Name: featureloc_slice(integer, bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS featureloc_slice(integer, integer, integer);
- CREATE OR REPLACE FUNCTION featureloc_slice(integer, bigint, bigint) RETURNS SETOF featureloc
- LANGUAGE sql
- AS $_$SELECT *
- FROM featureloc
- WHERE boxquery($2, $3) @ boxrange(fmin,fmax)
- AND srcfeature_id = $1 $_$;
- --
- -- Name: featureloc_slice(bigint, bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- CREATE OR REPLACE FUNCTION featureloc_slice(bigint, bigint, bigint) RETURNS SETOF featureloc
- LANGUAGE sql
- AS $_$SELECT *
- FROM featureloc
- WHERE boxquery($1, $2, $3) && boxrange(srcfeature_id,fmin,fmax)$_$;
- --
- -- Name: featureloc_slice(character varying, bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS featureloc_slice(character varying, integer, integer);
- CREATE OR REPLACE FUNCTION featureloc_slice(character varying, bigint, bigint) RETURNS SETOF featureloc
- LANGUAGE sql
- AS $_$SELECT featureloc.*
- FROM featureloc
- INNER JOIN feature AS srcf ON (srcf.feature_id = featureloc.srcfeature_id)
- WHERE boxquery($2, $3) @ boxrange(fmin,fmax)
- AND srcf.name = $1 $_$;
- --
- -- Name: cv; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cv ALTER cv_id TYPE bigint;
- --
- -- Name: cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cvterm
- ALTER cvterm_id TYPE bigint,
- ALTER cv_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
- --
- -- Name: organism; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE organism
- ALTER organism_id TYPE bigint,
- ADD infraspecific_name character varying(1024),
- ADD type_id bigint;
-
- --
- -- Name: get_cv_id_for_feature(); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS get_cv_id_for_feature();
- CREATE OR REPLACE FUNCTION get_cv_id_for_feature() RETURNS bigint
- LANGUAGE sql
- AS $$SELECT cv_id FROM cv WHERE name='sequence'$$;
- --
- -- Name: get_cv_id_for_feature_relationsgip(); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS get_cv_id_for_feature_relationsgip();
- CREATE OR REPLACE FUNCTION get_cv_id_for_feature_relationsgip() RETURNS bigint
- LANGUAGE sql
- AS $$SELECT cv_id FROM cv WHERE name='relationship'$$;
- --
- -- Name: get_cv_id_for_featureprop(); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS get_cv_id_for_featureprop();
- CREATE OR REPLACE FUNCTION get_cv_id_for_featureprop() RETURNS bigint
- LANGUAGE sql
- AS $$SELECT cv_id FROM cv WHERE name='feature_property'$$;
- --
- -- Name: get_cycle_cvterm_id(integer); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS get_cycle_cvterm_id(integer);
- CREATE OR REPLACE FUNCTION get_cycle_cvterm_id(integer) RETURNS integer
- LANGUAGE plpgsql
- AS $_$
- DECLARE
- cvid alias for $1;
- root cvterm%ROWTYPE;
- rtn int;
- BEGIN
- CREATE TEMP TABLE tmpcvtermpath(object_id bigint, subject_id bigint, cv_id bigint, type_id bigint, pathdistance int);
- CREATE INDEX tmp_cvtpath1 ON tmpcvtermpath(object_id, subject_id);
- FOR root IN SELECT DISTINCT t.* from cvterm t LEFT JOIN cvterm_relationship r ON (t.cvterm_id = r.subject_id) INNER JOIN cvterm_relationship r2 ON (t.cvterm_id = r2.object_id) WHERE t.cv_id = cvid AND r.subject_id is null LOOP
- SELECT INTO rtn _fill_cvtermpath4root2detect_cycle(root.cvterm_id, root.cv_id);
- IF (rtn > 0) THEN
- DROP TABLE tmpcvtermpath;
- RETURN rtn;
- END IF;
- END LOOP;
- DROP TABLE tmpcvtermpath;
- RETURN 0;
- END;
- $_$;
- --
- -- Name: get_cycle_cvterm_id(character varying); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS get_cycle_cvterm_id(character varying);
- CREATE OR REPLACE FUNCTION get_cycle_cvterm_id(character varying) RETURNS integer
- LANGUAGE plpgsql
- AS $_$
- DECLARE
- cvname alias for $1;
- cv_id bigint;
- rtn int;
- BEGIN
- SELECT INTO cv_id cv.cv_id from cv WHERE cv.name = cvname;
- SELECT INTO rtn get_cycle_cvterm_id(cv_id);
- RETURN rtn;
- END;
- $_$;
- --
- -- Name: get_cycle_cvterm_id(integer, integer); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS get_cycle_cvterm_id(integer, integer);
- CREATE OR REPLACE FUNCTION get_cycle_cvterm_id(integer, integer) RETURNS integer
- LANGUAGE plpgsql
- AS $_$
- DECLARE
- cvid alias for $1;
- rootid alias for $2;
- rtn int;
- BEGIN
- CREATE TEMP TABLE tmpcvtermpath(object_id bigint, subject_id bigint, cv_id bigint, type_id bigint, pathdistance int);
- CREATE INDEX tmp_cvtpath1 ON tmpcvtermpath(object_id, subject_id);
- SELECT INTO rtn _fill_cvtermpath4root2detect_cycle(rootid, cvid);
- IF (rtn > 0) THEN
- DROP TABLE tmpcvtermpath;
- RETURN rtn;
- END IF;
- DROP TABLE tmpcvtermpath;
- RETURN 0;
- END;
- $_$;
- --
- -- Name: get_feature_id(character varying, character varying, character varying); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS get_feature_id(character varying, character varying, character varying);
- CREATE OR REPLACE FUNCTION get_feature_id(character varying, character varying, character varying) RETURNS bigint
- LANGUAGE sql
- AS $_$
- SELECT feature_id
- FROM feature
- WHERE uniquename=$1
- AND type_id=get_feature_type_id($2)
- AND organism_id=get_organism_id($3)
- $_$;
- --
- -- Name: get_feature_relationship_type_id(character varying); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS get_feature_relationship_type_id(character varying);
- CREATE OR REPLACE FUNCTION get_feature_relationship_type_id(character varying) RETURNS bigint
- LANGUAGE sql
- AS $_$
- SELECT cvterm_id
- FROM cv INNER JOIN cvterm USING (cv_id)
- WHERE cvterm.name=$1 AND cv.name='relationship'
- $_$;
- --
- -- Name: get_feature_type_id(character varying); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS get_feature_type_id(character varying);
- CREATE OR REPLACE FUNCTION get_feature_type_id(character varying) RETURNS bigint
- LANGUAGE sql
- AS $_$
- SELECT cvterm_id
- FROM cv INNER JOIN cvterm USING (cv_id)
- WHERE cvterm.name=$1 AND cv.name='sequence'
- $_$;
- --
- -- Name: get_featureprop_type_id(character varying); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS get_featureprop_type_id(character varying);
- CREATE OR REPLACE FUNCTION get_featureprop_type_id(character varying) RETURNS bigint
- LANGUAGE sql
- AS $_$
- SELECT cvterm_id
- FROM cv INNER JOIN cvterm USING (cv_id)
- WHERE cvterm.name=$1 AND cv.name='feature_property'
- $_$;
-
- --
- -- Name: get_organism_id(character varying); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS get_organism_id(character varying);
- CREATE OR REPLACE FUNCTION get_organism_id(character varying) RETURNS bigint
- LANGUAGE sql
- AS $_$
- SELECT organism_id
- FROM organism
- WHERE genus=substring($1,1,position(' ' IN $1)-1)
- AND species=substring($1,position(' ' IN $1)+1)
- $_$;
-
- --
- -- Name: get_organism_id(character varying, character varying); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS get_organism_id(character varying, character varying);
- CREATE OR REPLACE FUNCTION get_organism_id(character varying, character varying) RETURNS bigint
- LANGUAGE sql
- AS $_$
- SELECT organism_id
- FROM organism
- WHERE genus=$1
- AND species=$2
- $_$;
-
- --
- -- Name: get_organism_id_abbrev(character varying); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS get_organism_id_abbrev(character varying);
- CREATE OR REPLACE FUNCTION get_organism_id_abbrev(character varying) RETURNS bigint
- LANGUAGE sql
- AS $_$
- SELECT organism_id
- FROM organism
- WHERE substr(genus,1,1)=substring($1,1,1)
- AND species=substring($1,position(' ' IN $1)+1)
- $_$;
- --
- -- Name: db; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE db ALTER db_id TYPE bigint;
- --
- -- Name: dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE dbxref
- ALTER dbxref_id TYPE bigint,
- ALTER db_id TYPE bigint,
- ALTER accession TYPE character varying(1024);
- --
- -- Name: feature_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_cvterm
- ALTER feature_cvterm_id TYPE bigint,
- ALTER feature_id TYPE bigint,
- ALTER cvterm_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: feature_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_dbxref
- ALTER feature_dbxref_id TYPE bigint,
- ALTER feature_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
-
- --
- -- Name: TABLE feature_dbxref; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE feature_dbxref IS 'Links a feature to dbxrefs.';
- --
- -- Name: COLUMN feature_dbxref.is_current; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN feature_dbxref.is_current IS 'True if this secondary dbxref is
- the most up to date accession in the corresponding db. Retired accessions
- should set this field to false';
- --
- -- Name: feature_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_pub
- ALTER feature_pub_id TYPE bigint,
- ALTER feature_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- --
- -- Name: feature_synonym; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_synonym
- ALTER feature_synonym_id TYPE bigint,
- ALTER synonym_id TYPE bigint,
- ALTER feature_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: featureprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE featureprop
- ALTER featureprop_id TYPE bigint,
- ALTER feature_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE pub
- ALTER pub_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: synonym; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE synonym
- ALTER synonym_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: phylonode_depth(bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS phylonode_depth(integer);
- CREATE OR REPLACE FUNCTION phylonode_depth(bigint) RETURNS double precision
- LANGUAGE plpgsql
- AS $_$DECLARE id ALIAS FOR $1;
- DECLARE depth FLOAT := 0;
- DECLARE curr_node phylonode%ROWTYPE;
- BEGIN
- SELECT INTO curr_node *
- FROM phylonode
- WHERE phylonode_id=id;
- depth = depth + curr_node.distance;
- IF curr_node.parent_phylonode_id IS NULL
- THEN RETURN depth;
- ELSE RETURN depth + phylonode_depth(curr_node.parent_phylonode_id);
- END IF;
- END
- $_$;
- --
- -- Name: phylonode_height(bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS phylonode_height(integer);
- CREATE OR REPLACE FUNCTION phylonode_height(bigint) RETURNS double precision
- LANGUAGE sql
- AS $_$
- SELECT coalesce(max(phylonode_height(phylonode_id) + distance), 0.0)
- FROM phylonode
- WHERE parent_phylonode_id = $1
- $_$;
- --
- -- Name: subsequence(bigint, bigint, bigint, integer); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS subsequence(integer, integer, integer, integer);
- CREATE OR REPLACE FUNCTION subsequence(bigint, bigint, bigint, integer) RETURNS text
- LANGUAGE sql
- AS $_$SELECT
- CASE WHEN $4<0
- THEN reverse_complement(substring(srcf.residues,CAST(($2+1) as int),CAST(($3-$2) as int)))
- ELSE substring(residues,CAST(($2+1) as int),CAST(($3-$2) as int))
- END AS residues
- FROM feature AS srcf
- WHERE
- srcf.feature_id=$1$_$;
- --
- -- Name: subsequence_by_feature(bigint, integer, integer); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS subsequence_by_feature(integer, integer, integer);
- CREATE OR REPLACE FUNCTION subsequence_by_feature(bigint, integer, integer) RETURNS text
- LANGUAGE sql
- AS $_$SELECT
- CASE WHEN strand<0
- THEN reverse_complement(substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int)))
- ELSE substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int))
- END AS residues
- FROM feature AS srcf
- INNER JOIN featureloc ON (srcf.feature_id=featureloc.srcfeature_id)
- WHERE
- featureloc.feature_id=$1 AND
- featureloc.rank=$2 AND
- featureloc.locgroup=$3$_$;
- --
- -- Name: subsequence_by_feature(bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS subsequence_by_feature(integer);
- CREATE OR REPLACE FUNCTION subsequence_by_feature(bigint) RETURNS text
- LANGUAGE sql
- AS $_$SELECT subsequence_by_feature($1,0,0)$_$;
- --
- -- Name: subsequence_by_featureloc(bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS subsequence_by_featureloc(integer);
- CREATE OR REPLACE FUNCTION subsequence_by_featureloc(bigint) RETURNS text
- LANGUAGE sql
- AS $_$SELECT
- CASE WHEN strand<0
- THEN reverse_complement(substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int)))
- ELSE substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int))
- END AS residues
- FROM feature AS srcf
- INNER JOIN featureloc ON (srcf.feature_id=featureloc.srcfeature_id)
- WHERE
- featureloc_id=$1$_$;
- --
- -- Name: subsequence_by_subfeatures(bigint, bigint, integer, integer); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS subsequence_by_subfeatures(integer, integer, integer, integer);
- CREATE OR REPLACE FUNCTION subsequence_by_subfeatures(bigint, bigint, integer, integer) RETURNS text
- LANGUAGE plpgsql
- AS $_$
- DECLARE v_feature_id ALIAS FOR $1;
- DECLARE v_rtype_id ALIAS FOR $2;
- DECLARE v_rank ALIAS FOR $3;
- DECLARE v_locgroup ALIAS FOR $4;
- DECLARE subseq TEXT;
- DECLARE seqrow RECORD;
- BEGIN
- subseq = '';
- FOR seqrow IN
- SELECT
- CASE WHEN strand<0
- THEN reverse_complement(substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int)))
- ELSE substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int))
- END AS residues
- FROM feature AS srcf
- INNER JOIN featureloc ON (srcf.feature_id=featureloc.srcfeature_id)
- INNER JOIN feature_relationship AS fr
- ON (fr.subject_id=featureloc.feature_id)
- WHERE
- fr.object_id=v_feature_id AND
- fr.type_id=v_rtype_id AND
- featureloc.rank=v_rank AND
- featureloc.locgroup=v_locgroup
- ORDER BY fr.rank
- LOOP
- subseq = subseq || seqrow.residues;
- END LOOP;
- RETURN subseq;
- END
- $_$;
- --
- -- Name: subsequence_by_subfeatures(bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS subsequence_by_subfeatures(integer);
- CREATE OR REPLACE FUNCTION subsequence_by_subfeatures(bigint) RETURNS text
- LANGUAGE sql
- AS $_$
- SELECT subsequence_by_subfeatures($1,get_feature_relationship_type_id('part_of'),0,0)
- $_$;
- --
- -- Name: subsequence_by_subfeatures(bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS subsequence_by_subfeatures(integer, integer);
- CREATE OR REPLACE FUNCTION subsequence_by_subfeatures(bigint, bigint) RETURNS text
- LANGUAGE sql
- AS $_$SELECT subsequence_by_subfeatures($1,$2,0,0)$_$;
- --
- -- Name: subsequence_by_typed_subfeatures(bigint, bigint, integer, integer); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS subsequence_by_typed_subfeatures(integer, integer, integer, integer);
- CREATE OR REPLACE FUNCTION subsequence_by_typed_subfeatures(bigint, bigint, integer, integer) RETURNS text
- LANGUAGE plpgsql
- AS $_$
- DECLARE v_feature_id ALIAS FOR $1;
- DECLARE v_ftype_id ALIAS FOR $2;
- DECLARE v_rank ALIAS FOR $3;
- DECLARE v_locgroup ALIAS FOR $4;
- DECLARE subseq TEXT;
- DECLARE seqrow RECORD;
- BEGIN
- subseq = '';
- FOR seqrow IN
- SELECT
- CASE WHEN strand<0
- THEN reverse_complement(substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int)))
- ELSE substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int))
- END AS residues
- FROM feature AS srcf
- INNER JOIN featureloc ON (srcf.feature_id=featureloc.srcfeature_id)
- INNER JOIN feature AS subf ON (subf.feature_id=featureloc.feature_id)
- INNER JOIN feature_relationship AS fr ON (fr.subject_id=subf.feature_id)
- WHERE
- fr.object_id=v_feature_id AND
- subf.type_id=v_ftype_id AND
- featureloc.rank=v_rank AND
- featureloc.locgroup=v_locgroup
- ORDER BY fr.rank
- LOOP
- subseq = subseq || seqrow.residues;
- END LOOP;
- RETURN subseq;
- END
- $_$;
- --
- -- Name: subsequence_by_typed_subfeatures(bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
- --
- DROP FUNCTION IF EXISTS subsequence_by_typed_subfeatures(integer, integer);
- CREATE OR REPLACE FUNCTION subsequence_by_typed_subfeatures(bigint, bigint) RETURNS text
- LANGUAGE sql
- AS $_$SELECT subsequence_by_typed_subfeatures($1,$2,0,0)$_$;
-
- --
- -- Name: acquisition; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE acquisition
- ALTER acquisition_id TYPE bigint,
- ALTER assay_id TYPE bigint,
- ALTER protocol_id TYPE bigint,
- ALTER channel_id TYPE bigint;
-
- --
- -- Name: acquisition_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE acquisition_relationship
- ALTER acquisition_relationship_id TYPE bigint,
- ALTER subject_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER object_id TYPE bigint;
- --
- -- Name: acquisitionprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE acquisitionprop
- ALTER acquisitionprop_id TYPE bigint,
- ALTER acquisition_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: analysis; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE analysis ALTER analysis_id TYPE bigint;
- --
- -- Name: analysis_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE analysis_cvterm (
- analysis_cvterm_id bigint NOT NULL,
- analysis_id bigint NOT NULL,
- cvterm_id bigint NOT NULL,
- is_not boolean DEFAULT false NOT NULL,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: TABLE analysis_cvterm; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE analysis_cvterm IS 'Associate a term from a cv with an analysis.';
- --
- -- Name: COLUMN analysis_cvterm.is_not; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN analysis_cvterm.is_not IS 'If this is set to true, then this
- annotation is interpreted as a NEGATIVE annotation - i.e. the analysis does
- NOT have the specified term.';
- --
- -- Name: analysis_cvterm_analysis_cvterm_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE analysis_cvterm_analysis_cvterm_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: analysis_cvterm_analysis_cvterm_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE analysis_cvterm_analysis_cvterm_id_seq OWNED BY analysis_cvterm.analysis_cvterm_id;
- --
- -- Name: analysis_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE analysis_dbxref (
- analysis_dbxref_id bigint NOT NULL,
- analysis_id bigint NOT NULL,
- dbxref_id bigint NOT NULL,
- is_current boolean DEFAULT true NOT NULL
- );
- --
- -- Name: TABLE analysis_dbxref; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE analysis_dbxref IS 'Links an analysis to dbxrefs.';
- --
- -- Name: COLUMN analysis_dbxref.is_current; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN analysis_dbxref.is_current IS 'True if this dbxref
- is the most up to date accession in the corresponding db. Retired
- accessions should set this field to false';
- --
- -- Name: analysis_dbxref_analysis_dbxref_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE analysis_dbxref_analysis_dbxref_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: analysis_dbxref_analysis_dbxref_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE analysis_dbxref_analysis_dbxref_id_seq OWNED BY analysis_dbxref.analysis_dbxref_id;
- --
- -- Name: analysis_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE analysis_pub (
- analysis_pub_id bigint NOT NULL,
- analysis_id bigint NOT NULL,
- pub_id bigint NOT NULL
- );
- --
- -- Name: TABLE analysis_pub; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE analysis_pub IS 'Provenance. Linking table between analyses and the publications that mention them.';
- --
- -- Name: analysis_pub_analysis_pub_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE analysis_pub_analysis_pub_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: analysis_pub_analysis_pub_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE analysis_pub_analysis_pub_id_seq OWNED BY analysis_pub.analysis_pub_id;
- --
- -- Name: analysis_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE analysis_relationship (
- analysis_relationship_id bigint NOT NULL,
- subject_id bigint NOT NULL,
- object_id bigint NOT NULL,
- type_id bigint NOT NULL,
- value text,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: COLUMN analysis_relationship.subject_id; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN analysis_relationship.subject_id IS 'analysis_relationship.subject_id i
- s the subject of the subj-predicate-obj sentence.';
- --
- -- Name: COLUMN analysis_relationship.object_id; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN analysis_relationship.object_id IS 'analysis_relationship.object_id
- is the object of the subj-predicate-obj sentence.';
- --
- -- Name: COLUMN analysis_relationship.type_id; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN analysis_relationship.type_id IS 'analysis_relationship.type_id
- is relationship type between subject and object. This is a cvterm, typically
- from the OBO relationship ontology, although other relationship types are allowed.';
- --
- -- Name: COLUMN analysis_relationship.value; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN analysis_relationship.value IS 'analysis_relationship.value
- is for additional notes or comments.';
- --
- -- Name: COLUMN analysis_relationship.rank; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN analysis_relationship.rank IS 'analysis_relationship.rank is
- the ordering of subject analysiss with respect to the object analysis may be
- important where rank is used to order these; starts from zero.';
- --
- -- Name: analysis_relationship_analysis_relationship_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE analysis_relationship_analysis_relationship_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: analysis_relationship_analysis_relationship_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE analysis_relationship_analysis_relationship_id_seq OWNED BY analysis_relationship.analysis_relationship_id;
- --
- -- Name: analysisfeature; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE analysisfeature
- ALTER analysisfeature_id TYPE bigint,
- ALTER feature_id TYPE bigint,
- ALTER analysis_id TYPE bigint;
-
- --
- -- Name: analysisfeatureprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE analysisfeatureprop
- ALTER analysisfeatureprop_id TYPE bigint,
- ALTER analysisfeature_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: analysisprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE analysisprop
- ALTER analysisprop_id TYPE bigint,
- ALTER analysis_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: arraydesign; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE arraydesign
- ALTER arraydesign_id TYPE bigint,
- ALTER manufacturer_id TYPE bigint,
- ALTER platformtype_id TYPE bigint,
- ALTER substratetype_id TYPE bigint,
- ALTER protocol_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
-
-
- --
- -- Name: arraydesignprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE arraydesignprop
- ALTER arraydesignprop_id TYPE bigint,
- ALTER arraydesign_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
-
- --
- -- Name: assay; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE assay
- ALTER assay_id TYPE bigint,
- ALTER arraydesign_id TYPE bigint,
- ALTER protocol_id TYPE bigint,
- ALTER operator_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
-
- --
- -- Name: assay_biomaterial; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE assay_biomaterial
- ALTER assay_biomaterial_id TYPE bigint,
- ALTER assay_id TYPE bigint,
- ALTER biomaterial_id TYPE bigint,
- ALTER channel_id TYPE bigint;
-
- --
- -- Name: assay_project; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE assay_project
- ALTER assay_project_id TYPE bigint,
- ALTER assay_id TYPE bigint,
- ALTER project_id TYPE bigint;
-
- --
- -- Name: assayprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE assayprop
- ALTER assayprop_id TYPE bigint,
- ALTER assay_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: biomaterial; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE biomaterial
- ALTER biomaterial_id TYPE bigint,
- ALTER taxon_id TYPE bigint,
- ALTER biosourceprovider_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
- --
- -- Name: biomaterial_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE biomaterial_dbxref
- ALTER biomaterial_dbxref_id TYPE bigint,
- ALTER biomaterial_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
-
- --
- -- Name: biomaterial_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE biomaterial_dbxref
- ALTER biomaterial_dbxref_id TYPE bigint,
- ALTER biomaterial_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
- --
- -- Name: biomaterial_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE biomaterial_relationship
- ALTER biomaterial_relationship_id TYPE bigint,
- ALTER subject_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER object_id TYPE bigint;
- --
- -- Name: biomaterial_treatment; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE biomaterial_treatment
- ALTER biomaterial_treatment_id TYPE bigint,
- ALTER biomaterial_id TYPE bigint,
- ALTER treatment_id TYPE bigint,
- ALTER unittype_id TYPE bigint;
-
- --
- -- Name: biomaterialprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE biomaterialprop
- ALTER biomaterialprop_id TYPE bigint,
- ALTER biomaterial_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: cell_line; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cell_line
- ALTER cell_line_id TYPE bigint,
- ALTER organism_id TYPE bigint;
-
- --
- -- Name: cell_line_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cell_line_cvterm
- ALTER cell_line_cvterm_id TYPE bigint,
- ALTER cell_line_id TYPE bigint,
- ALTER cvterm_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: cell_line_cvtermprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cell_line_cvtermprop
- ALTER cell_line_cvtermprop_id TYPE bigint,
- ALTER cell_line_cvterm_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: cell_line_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cell_line_dbxref
- ALTER cell_line_dbxref_id TYPE bigint,
- ALTER cell_line_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
-
- --
- -- Name: cell_line_feature; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cell_line_feature
- ALTER cell_line_feature_id TYPE bigint,
- ALTER cell_line_id TYPE bigint,
- ALTER feature_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: cell_line_library; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cell_line_library
- ALTER cell_line_library_id TYPE bigint,
- ALTER cell_line_id TYPE bigint,
- ALTER library_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: cell_line_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cell_line_pub
- ALTER cell_line_pub_id TYPE bigint,
- ALTER cell_line_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: cell_line_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cell_line_relationship
- ALTER cell_line_relationship_id TYPE bigint,
- ALTER subject_id TYPE bigint,
- ALTER object_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: cell_line_synonym; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cell_line_synonym
- ALTER cell_line_synonym_id TYPE bigint,
- ALTER cell_line_id TYPE bigint,
- ALTER synonym_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: cell_lineprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cell_lineprop
- ALTER cell_lineprop_id TYPE bigint,
- ALTER cell_line_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: cell_lineprop_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cell_lineprop_pub
- ALTER cell_lineprop_pub_id TYPE bigint,
- ALTER cell_lineprop_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- --
- -- Name: chadoprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE chadoprop
- ALTER chadoprop_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: channel; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE channel ALTER channel_id TYPE bigint;
- --
- -- Name: contact; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE contact
- ALTER contact_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: contact_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE contact_relationship
- ALTER contact_relationship_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER subject_id TYPE bigint,
- ALTER object_id TYPE bigint;
- --
- -- Name: contactprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE contactprop (
- contactprop_id bigint NOT NULL,
- contact_id bigint NOT NULL,
- type_id bigint NOT NULL,
- value text,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: TABLE contactprop; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE contactprop IS 'A contact can have any number of slot-value property
- tags attached to it. This is an alternative to hardcoding a list of columns in the
- relational schema, and is completely extensible.';
- --
- -- Name: contactprop_contactprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE contactprop_contactprop_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: contactprop_contactprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE contactprop_contactprop_id_seq OWNED BY contactprop.contactprop_id;
- --
- -- Name: control; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE control
- ALTER control_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER assay_id TYPE bigint,
- ALTER tableinfo_id TYPE bigint;
- --
- -- Name: cvterm_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cvterm_relationship
- ALTER cvterm_relationship_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER subject_id TYPE bigint,
- ALTER object_id TYPE bigint;
-
- --
- -- Name: cvprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cvprop
- ALTER cvprop_id TYPE bigint,
- ALTER cv_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: cvterm_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cvterm_dbxref
- ALTER cvterm_dbxref_id TYPE bigint,
- ALTER cvterm_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
- --
- -- Name: cvtermprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cvtermprop
- ALTER cvtermprop_id TYPE bigint,
- ALTER cvterm_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: cvtermsynonym; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE cvtermsynonym
- ALTER cvtermsynonym_id TYPE bigint,
- ALTER cvterm_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: dbprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE dbprop (
- dbprop_id bigint NOT NULL,
- db_id bigint NOT NULL,
- type_id bigint NOT NULL,
- value text,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: TABLE dbprop; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE dbprop IS 'An external database can have any number of
- slot-value property tags attached to it. This is an alternative to
- hardcoding a list of columns in the relational schema, and is
- completely extensible. There is a unique constraint, dbprop_c1, for
- the combination of db_id, rank, and type_id. Multivalued property-value pairs must be differentiated by rank.';
- --
- -- Name: dbprop_dbprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE dbprop_dbprop_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: dbprop_dbprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE dbprop_dbprop_id_seq OWNED BY dbprop.dbprop_id;
- --
- -- Name: dbxrefprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE dbxrefprop
- ALTER dbxrefprop_id TYPE bigint,
- ALTER dbxref_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: eimage; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE eimage ALTER eimage_id TYPE bigint;
- --
- -- Name: element; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE element
- ALTER element_id TYPE bigint,
- ALTER feature_id TYPE bigint,
- ALTER arraydesign_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
-
- --
- -- Name: element_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE element_relationship
- ALTER element_relationship_id TYPE bigint,
- ALTER subject_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER object_id TYPE bigint;
-
- --
- -- Name: elementresult; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE elementresult
- ALTER elementresult_id TYPE bigint,
- ALTER element_id TYPE bigint,
- ALTER quantification_id TYPE bigint;
-
- --
- -- Name: elementresult_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE elementresult_relationship
- ALTER elementresult_relationship_id TYPE bigint,
- ALTER subject_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER object_id TYPE bigint;
- --
- -- Name: environment; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE environment ALTER environment_id TYPE bigint;
- --
- -- Name: environment_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE environment_cvterm
- ALTER environment_cvterm_id TYPE bigint,
- ALTER environment_id TYPE bigint,
- ALTER cvterm_id TYPE bigint;
-
- --
- -- Name: expression; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE expression ALTER expression_id TYPE bigint;
- --
- -- Name: expression_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE expression_cvterm
- ALTER expression_cvterm_id TYPE bigint,
- ALTER expression_id TYPE bigint,
- ALTER cvterm_id TYPE bigint,
- ALTER cvterm_type_id TYPE bigint;
-
- --
- -- Name: expression_cvtermprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE expression_cvtermprop
- ALTER expression_cvtermprop_id TYPE bigint,
- ALTER expression_cvterm_id type bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: expression_image; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE expression_image
- ALTER expression_image_id TYPE bigint,
- ALTER expression_id TYPE bigint,
- ALTER eimage_id TYPE bigint;
-
- --
- -- Name: expression_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE expression_pub
- ALTER expression_pub_id TYPE bigint,
- ALTER expression_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: expressionprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE expressionprop
- ALTER expressionprop_id TYPE bigint,
- ALTER expression_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: feature_contact; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE feature_contact (
- feature_contact_id bigint NOT NULL,
- feature_id bigint NOT NULL,
- contact_id bigint NOT NULL
- );
- --
- -- Name: TABLE feature_contact; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE feature_contact IS 'Links contact(s) with a feature. Used to indicate a particular
- person or organization responsible for discovery or that can provide more information on a particular feature.';
- --
- -- Name: feature_contact_feature_contact_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE feature_contact_feature_contact_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: feature_contact_feature_contact_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE feature_contact_feature_contact_id_seq OWNED BY feature_contact.feature_contact_id;
- --
- -- Name: feature_cvterm_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_cvterm_dbxref
- ALTER feature_cvterm_dbxref_id TYPE bigint,
- ALTER feature_cvterm_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
-
-
- --
- -- Name: feature_cvterm_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_cvterm_pub
- ALTER feature_cvterm_pub_id TYPE bigint,
- ALTER feature_cvterm_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: feature_cvtermprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_cvtermprop
- ALTER feature_cvtermprop_id TYPE bigint,
- ALTER feature_cvterm_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: feature_expression; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_expression
- ALTER feature_expression_id TYPE bigint,
- ALTER expression_id TYPE bigint,
- ALTER feature_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: feature_expressionprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_expressionprop
- ALTER feature_expressionprop_id TYPE bigint,
- ALTER feature_expression_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: feature_genotype; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_genotype
- ALTER feature_genotype_id TYPE bigint,
- ALTER feature_id TYPE bigint,
- ALTER genotype_id TYPE bigint,
- ALTER chromosome_id TYPE bigint,
- ALTER cvterm_id TYPE bigint;
- --
- -- Name: feature_phenotype; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_phenotype
- ALTER feature_phenotype_id TYPE bigint,
- ALTER feature_id TYPE bigint,
- ALTER phenotype_id TYPE bigint;
-
- --
- -- Name: TABLE feature_phenotype; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE feature_phenotype IS 'Linking table between features and phenotypes.';
- --
- -- Name: feature_pubprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_pubprop
- ALTER feature_pubprop_id TYPE bigint,
- ALTER feature_pub_id TYPE bigint,
- ALTER type_id TYPE bigint ;
- --
- -- Name: feature_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_relationship
- ALTER feature_relationship_id TYPE bigint,
- ALTER subject_id TYPE bigint,
- ALTER object_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: feature_relationship_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_relationship_pub
- ALTER feature_relationship_pub_id TYPE bigint,
- ALTER feature_relationship_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: feature_relationshipprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_relationshipprop
- ALTER feature_relationshipprop_id TYPE bigint,
- ALTER feature_relationship_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: feature_relationshipprop_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE feature_relationshipprop_pub
- ALTER feature_relationshipprop_pub_id TYPE bigint,
- ALTER feature_relationshipprop_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- --
- -- Name: featureloc_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE featureloc_pub
- ALTER featureloc_pub_id TYPE bigint,
- ALTER featureloc_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- --
- -- Name: featuremap; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE featuremap
- ALTER featuremap_id TYPE bigint,
- ALTER unittype_id TYPE bigint;
- --
- -- Name: featuremap_contact; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE featuremap_contact (
- featuremap_contact_id bigint NOT NULL,
- featuremap_id bigint NOT NULL,
- contact_id bigint NOT NULL
- );
- --
- -- Name: TABLE featuremap_contact; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE featuremap_contact IS 'Links contact(s) with a featuremap. Used to
- indicate a particular person or organization responsible for constrution of or
- that can provide more information on a particular featuremap.';
- --
- -- Name: featuremap_contact_featuremap_contact_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE featuremap_contact_featuremap_contact_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: featuremap_contact_featuremap_contact_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE featuremap_contact_featuremap_contact_id_seq OWNED BY featuremap_contact.featuremap_contact_id;
- --
- -- Name: featuremap_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE featuremap_dbxref (
- featuremap_dbxref_id bigint NOT NULL,
- featuremap_id bigint NOT NULL,
- dbxref_id bigint NOT NULL,
- is_current boolean DEFAULT true NOT NULL
- );
- --
- -- Name: featuremap_dbxref_featuremap_dbxref_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE featuremap_dbxref_featuremap_dbxref_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: featuremap_dbxref_featuremap_dbxref_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE featuremap_dbxref_featuremap_dbxref_id_seq OWNED BY featuremap_dbxref.featuremap_dbxref_id;
- --
- -- Name: featuremap_organism; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE featuremap_organism (
- featuremap_organism_id bigint NOT NULL,
- featuremap_id bigint NOT NULL,
- organism_id bigint NOT NULL
- );
- --
- -- Name: TABLE featuremap_organism; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE featuremap_organism IS 'Links a featuremap to the organism(s) with which it is associated.';
- --
- -- Name: featuremap_organism_featuremap_organism_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE featuremap_organism_featuremap_organism_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: featuremap_organism_featuremap_organism_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE featuremap_organism_featuremap_organism_id_seq OWNED BY featuremap_organism.featuremap_organism_id;
- --
- -- Name: featuremap_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE featuremap_pub
- ALTER featuremap_pub_id TYPE bigint,
- ALTER featuremap_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: featuremapprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE featuremapprop (
- featuremapprop_id bigint NOT NULL,
- featuremap_id bigint NOT NULL,
- type_id bigint NOT NULL,
- value text,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: TABLE featuremapprop; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE featuremapprop IS 'A featuremap can have any number of slot-value property
- tags attached to it. This is an alternative to hardcoding a list of columns in the
- relational schema, and is completely extensible.';
- --
- -- Name: featuremapprop_featuremapprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE featuremapprop_featuremapprop_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: featuremapprop_featuremapprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE featuremapprop_featuremapprop_id_seq OWNED BY featuremapprop.featuremapprop_id;
- --
- -- Name: featurepos; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE featurepos
- ALTER featurepos_id TYPE bigint,
- ALTER featuremap_id TYPE bigint,
- ALTER featuremap_id DROP DEFAULT,
- ALTER feature_id TYPE bigint,
- ALTER map_feature_id TYPE bigint;
- DROP SEQUENCE featurepos_featuremap_id_seq;
-
- --
- -- Name: featureposprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE featureposprop (
- featureposprop_id bigint NOT NULL,
- featurepos_id bigint NOT NULL,
- type_id bigint NOT NULL,
- value text,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: TABLE featureposprop; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE featureposprop IS 'Property or attribute of a featurepos record.';
- --
- -- Name: featureposprop_featureposprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE featureposprop_featureposprop_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: featureposprop_featureposprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE featureposprop_featureposprop_id_seq OWNED BY featureposprop.featureposprop_id;
- --
- -- Name: featureprop_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE featureprop_pub
- ALTER featureprop_pub_id TYPE bigint,
- ALTER featureprop_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- --
- -- Name: featurerange; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE featurerange
- ALTER featurerange_id TYPE bigint,
- ALTER featuremap_id TYPE bigint,
- ALTER feature_id TYPE bigint,
- ALTER leftstartf_id TYPE bigint,
- ALTER leftendf_id TYPE bigint,
- ALTER rightstartf_id TYPE bigint,
- ALTER rightendf_id TYPE bigint;
-
- --
- -- Name: genotype; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE genotype
- ALTER genotype_id TYPE bigint,
- ALTER description TYPE text,
- ALTER type_id TYPE bigint;
- --
- -- Name: genotypeprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE genotypeprop
- ALTER genotypeprop_id TYPE bigint,
- ALTER genotype_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: library; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE library
- ALTER library_id TYPE bigint,
- ALTER organism_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: COLUMN library.type_id; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN library.type_id IS 'The type_id foreign key links to a controlled vocabulary of library types. Examples of this would be: "cDNA_library" or "genomic_library"';
- --
- -- Name: library_contact; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE library_contact (
- library_contact_id bigint NOT NULL,
- library_id bigint NOT NULL,
- contact_id bigint NOT NULL
- );
- --
- -- Name: TABLE library_contact; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE library_contact IS 'Links contact(s) with a library. Used to indicate a particular person or organization responsible for creation of or that can provide more information on a particular library.';
- --
- -- Name: library_contact_library_contact_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE library_contact_library_contact_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: library_contact_library_contact_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE library_contact_library_contact_id_seq OWNED BY library_contact.library_contact_id;
- --
- -- Name: library_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE library_cvterm
- ALTER library_cvterm_id TYPE bigint,
- ALTER library_id TYPE bigint,
- ALTER cvterm_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- --
- -- Name: library_dbxref; Type: TABLE; Schema: public; Owner: -; Tablespace:
- --
- ALTER TABLE library_dbxref
- ALTER library_dbxref_id TYPE bigint,
- ALTER library_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
- --
- -- Name: TABLE library_dbxref; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE library_dbxref IS 'Links a library to dbxrefs.';
- --
- -- Name: library_expression; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE library_expression (
- library_expression_id bigint NOT NULL,
- library_id bigint NOT NULL,
- expression_id bigint NOT NULL,
- pub_id bigint NOT NULL
- );
- --
- -- Name: TABLE library_expression; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE library_expression IS 'Links a library to expression statements.';
- --
- -- Name: library_expression_library_expression_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE library_expression_library_expression_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: library_expression_library_expression_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE library_expression_library_expression_id_seq OWNED BY library_expression.library_expression_id;
- --
- -- Name: library_expressionprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE library_expressionprop (
- library_expressionprop_id bigint NOT NULL,
- library_expression_id bigint NOT NULL,
- type_id bigint NOT NULL,
- value text,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: TABLE library_expressionprop; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE library_expressionprop IS 'Attributes of a library_expression relationship.';
- --
- -- Name: library_expressionprop_library_expressionprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE library_expressionprop_library_expressionprop_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: library_expressionprop_library_expressionprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE library_expressionprop_library_expressionprop_id_seq OWNED BY library_expressionprop.library_expressionprop_id;
- --
- -- Name: library_feature; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE library_feature
- ALTER library_feature_id TYPE bigint,
- ALTER library_id TYPE bigint,
- ALTER feature_id TYPE bigint;
- --
- -- Name: library_featureprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE library_featureprop (
- library_featureprop_id bigint NOT NULL,
- library_feature_id bigint NOT NULL,
- type_id bigint NOT NULL,
- value text,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: TABLE library_featureprop; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE library_featureprop IS 'Attributes of a library_feature relationship.';
- --
- -- Name: library_featureprop_library_featureprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE library_featureprop_library_featureprop_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: library_featureprop_library_featureprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE library_featureprop_library_featureprop_id_seq OWNED BY library_featureprop.library_featureprop_id;
- --
- -- Name: library_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE library_pub
- ALTER library_pub_id TYPE bigint,
- ALTER library_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: TABLE library_pub; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE library_pub IS 'Attribution for a library.';
- --
- -- Name: library_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE library_relationship (
- library_relationship_id bigint NOT NULL,
- subject_id bigint NOT NULL,
- object_id bigint NOT NULL,
- type_id bigint NOT NULL
- );
- --
- -- Name: TABLE library_relationship; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE library_relationship IS 'Relationships between libraries.';
- --
- -- Name: library_relationship_library_relationship_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE library_relationship_library_relationship_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: library_relationship_library_relationship_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE library_relationship_library_relationship_id_seq OWNED BY library_relationship.library_relationship_id;
- --
- -- Name: library_relationship_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE library_relationship_pub (
- library_relationship_pub_id bigint NOT NULL,
- library_relationship_id bigint NOT NULL,
- pub_id bigint NOT NULL
- );
- --
- -- Name: TABLE library_relationship_pub; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE library_relationship_pub IS 'Provenance of library_relationship.';
- --
- -- Name: library_relationship_pub_library_relationship_pub_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE library_relationship_pub_library_relationship_pub_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: library_relationship_pub_library_relationship_pub_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE library_relationship_pub_library_relationship_pub_id_seq OWNED BY library_relationship_pub.library_relationship_pub_id;
- --
- -- Name: library_synonym; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE library_synonym
- ALTER library_synonym_id TYPE bigint,
- ALTER synonym_id TYPE bigint,
- ALTER library_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: TABLE library_synonym; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE library_synonym IS 'Linking table between library and synonym.';
- --
- -- Name: libraryprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE libraryprop
- ALTER libraryprop_id TYPE bigint,
- ALTER library_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: TABLE libraryprop; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE libraryprop IS 'Tag-value properties - follows standard chado model.';
- --
- -- Name: libraryprop_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE libraryprop_pub
- ALTER libraryprop_pub_id TYPE bigint,
- ALTER libraryprop_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- --
- -- Name: TABLE libraryprop_pub; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE libraryprop_pub IS 'Attribution for libraryprop.';
- --
- -- Name: magedocumentation; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE magedocumentation
- ALTER magedocumentation_id TYPE bigint,
- ALTER mageml_id TYPE bigint,
- ALTER tableinfo_id TYPE bigint;
- --
- -- Name: mageml; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE mageml ALTER mageml_id TYPE bigint;
- --
- -- Name: nd_experiment; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_experiment
- ALTER nd_experiment_id TYPE bigint,
- ALTER nd_geolocation_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: TABLE nd_experiment; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE nd_experiment IS 'This is the core table for the natural diversity module,
- representing each individual assay that is undertaken (this is usually *not* an
- entire experiment). Each nd_experiment should give rise to a single genotype or
- phenotype and be described via 1 (or more) protocols. Collections of assays that
- relate to each other should be linked to the same record in the project table.';
- --
- -- Name: nd_experiment_analysis; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE nd_experiment_analysis (
- nd_experiment_analysis_id bigint NOT NULL,
- nd_experiment_id bigint NOT NULL,
- analysis_id bigint NOT NULL,
- type_id bigint
- );
- --
- -- Name: TABLE nd_experiment_analysis; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE nd_experiment_analysis IS 'An analysis that is used in an experiment';
- --
- -- Name: nd_experiment_analysis_nd_experiment_analysis_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE nd_experiment_analysis_nd_experiment_analysis_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: nd_experiment_analysis_nd_experiment_analysis_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE nd_experiment_analysis_nd_experiment_analysis_id_seq OWNED BY nd_experiment_analysis.nd_experiment_analysis_id;
- --
- -- Name: nd_experiment_contact; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_experiment_contact
- ALTER nd_experiment_contact_id TYPE bigint,
- ALTER nd_experiment_id TYPE bigint,
- ALTER contact_id TYPE bigint;
- --
- -- Name: nd_experiment_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_experiment_dbxref
- ALTER nd_experiment_dbxref_id TYPE bigint,
- ALTER nd_experiment_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
-
- --
- -- Name: nd_experiment_genotype; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_experiment_genotype
- ALTER nd_experiment_genotype_id TYPE bigint,
- ALTER nd_experiment_id TYPE bigint,
- ALTER genotype_id TYPE bigint;
-
- --
- -- Name: nd_experiment_phenotype; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_experiment_phenotype
- ALTER nd_experiment_phenotype_id TYPE bigint,
- ALTER nd_experiment_id TYPE bigint,
- ALTER phenotype_id TYPE bigint;
-
- --
- -- Name: nd_experiment_project; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_experiment_project
- ALTER nd_experiment_project_id TYPE bigint,
- ALTER project_id TYPE bigint,
- ALTER nd_experiment_id TYPE bigint;
-
- --
- -- Name: TABLE nd_experiment_project; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE nd_experiment_project IS 'Used to group together related nd_experiment records. All nd_experiments
- should be linked to at least one project.';
- --
- -- Name: nd_experiment_protocol; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_experiment_protocol
- ALTER nd_experiment_protocol_id TYPE bigint,
- ALTER nd_experiment_id TYPE bigint,
- ALTER nd_protocol_id TYPE bigint;
- --
- -- Name: nd_experiment_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_experiment_pub
- ALTER nd_experiment_pub_id TYPE bigint,
- ALTER nd_experiment_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- --
- -- Name: nd_experiment_stock; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_experiment_stock
- ALTER nd_experiment_stock_id TYPE bigint,
- ALTER nd_experiment_id TYPE bigint,
- ALTER stock_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: nd_experiment_stock_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_experiment_stock_dbxref
- ALTER nd_experiment_stock_dbxref_id TYPE bigint,
- ALTER nd_experiment_stock_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
-
- --
- -- Name: nd_experiment_stockprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_experiment_stockprop
- ALTER nd_experiment_stockprop_id TYPE bigint,
- ALTER nd_experiment_stock_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: nd_experimentprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_experimentprop
- ALTER nd_experimentprop_id TYPE bigint,
- ALTER nd_experiment_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: TABLE nd_experimentprop; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE nd_experimentprop IS 'An nd_experiment can have any number of
- slot-value property tags attached to it. This is an alternative to
- hardcoding a list of columns in the relational schema, and is
- completely extensible. There is a unique constraint, stockprop_c1, for
- the combination of stock_id, rank, and type_id. Multivalued property-value pairs must be differentiated by rank.';
- --
- -- Name: nd_geolocation; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_geolocation
- ALTER nd_geolocation_id TYPE bigint,
- ALTER description TYPE text;
-
- --
- -- Name: nd_geolocationprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_geolocationprop
- ALTER nd_geolocationprop_id TYPE bigint,
- ALTER nd_geolocation_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: nd_protocol; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_protocol
- ALTER nd_protocol_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: nd_protocol_reagent; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_protocol_reagent
- ALTER nd_protocol_reagent_id TYPE bigint,
- ALTER nd_protocol_id TYPE bigint,
- ALTER reagent_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: nd_protocolprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_protocolprop
- ALTER nd_protocolprop_id TYPE bigint,
- ALTER nd_protocol_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: nd_reagent; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_reagent
- ALTER nd_reagent_id TYPE bigint,
- ALTER type_id TYPE bigint ,
- ALTER feature_id TYPE bigint;
- --
- -- Name: nd_reagent_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_reagent_relationship
- ALTER nd_reagent_relationship_id TYPE bigint,
- ALTER subject_reagent_id TYPE bigint,
- ALTER object_reagent_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: nd_reagentprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE nd_reagentprop
- ALTER nd_reagentprop_id TYPE bigint,
- ALTER nd_reagent_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: COLUMN organism.infraspecific_name; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN organism.infraspecific_name IS 'The scientific name for any taxon
- below the rank of species. The rank should be specified using the type_id field
- and the name is provided here.';
- --
- -- Name: COLUMN organism.type_id; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN organism.type_id IS 'A controlled vocabulary term that
- specifies the organism rank below species. It is used when an infraspecific
- name is provided. Ideally, the rank should be a valid ICN name such as
- subspecies, varietas, subvarietas, forma and subforma';
- --
- -- Name: organism_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE organism_cvterm (
- organism_cvterm_id bigint NOT NULL,
- organism_id bigint NOT NULL,
- cvterm_id bigint NOT NULL,
- rank integer DEFAULT 0 NOT NULL,
- pub_id bigint NOT NULL
- );
- --
- -- Name: TABLE organism_cvterm; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE organism_cvterm IS 'organism to cvterm associations. Examples: taxonomic name';
- --
- -- Name: COLUMN organism_cvterm.rank; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN organism_cvterm.rank IS 'Property-Value
- ordering. Any organism_cvterm can have multiple values for any particular
- property type - these are ordered in a list using rank, counting from
- zero. For properties that are single-valued rather than multi-valued,
- the default 0 value should be used';
- --
- -- Name: organism_cvterm_organism_cvterm_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE organism_cvterm_organism_cvterm_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: organism_cvterm_organism_cvterm_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE organism_cvterm_organism_cvterm_id_seq OWNED BY organism_cvterm.organism_cvterm_id;
- --
- -- Name: organism_cvtermprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE organism_cvtermprop (
- organism_cvtermprop_id bigint NOT NULL,
- organism_cvterm_id bigint NOT NULL,
- type_id bigint NOT NULL,
- value text,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: TABLE organism_cvtermprop; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE organism_cvtermprop IS 'Extensible properties for
- organism to cvterm associations. Examples: qualifiers';
- --
- -- Name: COLUMN organism_cvtermprop.type_id; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN organism_cvtermprop.type_id IS 'The name of the
- property/slot is a cvterm. The meaning of the property is defined in
- that cvterm. ';
- --
- -- Name: COLUMN organism_cvtermprop.value; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN organism_cvtermprop.value IS 'The value of the
- property, represented as text. Numeric values are converted to their
- text representation. This is less efficient than using native database
- types, but is easier to query.';
- --
- -- Name: COLUMN organism_cvtermprop.rank; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN organism_cvtermprop.rank IS 'Property-Value
- ordering. Any organism_cvterm can have multiple values for any particular
- property type - these are ordered in a list using rank, counting from
- zero. For properties that are single-valued rather than multi-valued,
- the default 0 value should be used';
- --
- -- Name: organism_cvtermprop_organism_cvtermprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE organism_cvtermprop_organism_cvtermprop_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: organism_cvtermprop_organism_cvtermprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE organism_cvtermprop_organism_cvtermprop_id_seq OWNED BY organism_cvtermprop.organism_cvtermprop_id;
- --
- -- Name: organism_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE organism_dbxref
- ALTER organism_dbxref_id TYPE bigint,
- ALTER organism_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
-
- --
- -- Name: TABLE organism_dbxref; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE organism_dbxref IS 'Links an organism to a dbxref.';
- --
- -- Name: organism_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE organism_pub (
- organism_pub_id bigint NOT NULL,
- organism_id bigint NOT NULL,
- pub_id bigint NOT NULL
- );
- --
- -- Name: TABLE organism_pub; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE organism_pub IS 'Attribution for organism.';
- --
- -- Name: organism_pub_organism_pub_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE organism_pub_organism_pub_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: organism_pub_organism_pub_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE organism_pub_organism_pub_id_seq OWNED BY organism_pub.organism_pub_id;
- --
- -- Name: organism_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE organism_relationship (
- organism_relationship_id bigint NOT NULL,
- subject_id bigint NOT NULL,
- object_id bigint NOT NULL,
- type_id bigint NOT NULL,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: TABLE organism_relationship; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE organism_relationship IS 'Specifies relationships between organisms
- that are not taxonomic. For example, in breeding, relationships such as
- "sterile_with", "incompatible_with", or "fertile_with" would be appropriate. Taxonomic
- relatinoships should be housed in the phylogeny tables.';
- --
- -- Name: organism_relationship_organism_relationship_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE organism_relationship_organism_relationship_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: organism_relationship_organism_relationship_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE organism_relationship_organism_relationship_id_seq OWNED BY organism_relationship.organism_relationship_id;
- --
- -- Name: organismprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE organismprop
- ALTER organismprop_id TYPE bigint,
- ALTER organism_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: organismprop_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE organismprop_pub (
- organismprop_pub_id bigint NOT NULL,
- organismprop_id bigint NOT NULL,
- pub_id bigint NOT NULL,
- value text,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: TABLE organismprop_pub; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE organismprop_pub IS 'Attribution for organismprop.';
- --
- -- Name: organismprop_pub_organismprop_pub_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE organismprop_pub_organismprop_pub_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: organismprop_pub_organismprop_pub_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE organismprop_pub_organismprop_pub_id_seq OWNED BY organismprop_pub.organismprop_pub_id;
- --
- -- Name: phendesc; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE phendesc
- ALTER phendesc_id TYPE bigint,
- ALTER genotype_id TYPE bigint,
- ALTER environment_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: phenotype; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE phenotype
- ALTER phenotype_id TYPE bigint,
- ALTER observable_id TYPE bigint,
- ALTER attr_id TYPE bigint,
- ALTER cvalue_id TYPE bigint,
- ALTER assay_id TYPE bigint;
-
- --
- -- Name: phenotype_comparison; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE phenotype_comparison
- ALTER phenotype_comparison_id TYPE bigint,
- ALTER genotype1_id TYPE bigint,
- ALTER environment1_id TYPE bigint,
- ALTER genotype2_id TYPE bigint,
- ALTER environment2_id TYPE bigint,
- ALTER phenotype1_id TYPE bigint,
- ALTER phenotype2_id TYPE bigint,
- ALTER pub_id TYPE bigint,
- ALTER organism_id TYPE bigint;
-
- --
- -- Name: phenotype_comparison_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE phenotype_comparison_cvterm
- ALTER phenotype_comparison_cvterm_id TYPE bigint,
- ALTER phenotype_comparison_id TYPE bigint,
- ALTER cvterm_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- --
- -- Name: phenotype_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE phenotype_cvterm
- ALTER phenotype_cvterm_id TYPE bigint,
- ALTER phenotype_id TYPE bigint,
- ALTER cvterm_id TYPE bigint;
- --
- -- Name: TABLE phenotype_cvterm; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE phenotype_cvterm IS 'phenotype to cvterm associations.';
- --
- -- Name: phenotypeprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE phenotypeprop (
- phenotypeprop_id bigint NOT NULL,
- phenotype_id bigint NOT NULL,
- type_id bigint NOT NULL,
- value text,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: TABLE phenotypeprop; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE phenotypeprop IS 'A phenotype can have any number of slot-value property tags attached to it. This is an alternative to hardcoding a list of columns in the relational schema, and is completely extensible. There is a unique constraint, phenotypeprop_c1, for the combination of phenotype_id, rank, and type_id. Multivalued property-value pairs must be differentiated by rank.';
- --
- -- Name: phenotypeprop_phenotypeprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE phenotypeprop_phenotypeprop_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: phenotypeprop_phenotypeprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE phenotypeprop_phenotypeprop_id_seq OWNED BY phenotypeprop.phenotypeprop_id;
- --
- -- Name: phenstatement; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE phenstatement
- ALTER phenstatement_id TYPE bigint,
- ALTER genotype_id TYPE bigint,
- ALTER environment_id TYPE bigint,
- ALTER phenotype_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: phylonode; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE phylonode
- ALTER phylonode_id TYPE bigint,
- ALTER phylotree_id TYPE bigint,
- ALTER parent_phylonode_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER feature_id TYPE bigint;
- --
- -- Name: phylonode_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE phylonode_dbxref
- ALTER phylonode_dbxref_id TYPE bigint,
- ALTER phylonode_id TYPE bigint,
- ALTER dbxref_id TYPE biginT;
-
- --
- -- Name: phylonode_organism; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE phylonode_organism
- ALTER phylonode_organism_id TYPE bigint,
- ALTER phylonode_id TYPE bigint,
- ALTER organism_id TYPE bigint;
- --
- -- Name: phylonode_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE phylonode_pub
- ALTER phylonode_pub_id TYPE bigint,
- ALTER phylonode_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- --
- -- Name: phylonode_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE phylonode_relationship
- ALTER phylonode_relationship_id TYPE bigint,
- ALTER subject_id TYPE bigint,
- ALTER object_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER phylotree_id TYPE bigint;
- --
- -- Name: phylonodeprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE phylonodeprop
- ALTER phylonodeprop_id TYPE bigint,
- ALTER phylonode_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: phylotree; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE phylotree
- ALTER phylotree_id TYPE bigint,
- ALTER dbxref_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER analysis_id TYPE bigint;
-
- --
- -- Name: phylotree_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE phylotree_pub
- ALTER phylotree_pub_id TYPE bigint,
- ALTER phylotree_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- --
- -- Name: phylotreeprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE phylotreeprop (
- phylotreeprop_id bigint NOT NULL,
- phylotree_id bigint NOT NULL,
- type_id bigint NOT NULL,
- value text,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: TABLE phylotreeprop; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE phylotreeprop IS 'A phylotree can have any number of slot-value property
- tags attached to it. This is an alternative to hardcoding a list of columns in the
- relational schema, and is completely extensible.';
- --
- -- Name: COLUMN phylotreeprop.type_id; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN phylotreeprop.type_id IS 'The name of the property/slot is a cvterm.
- The meaning of the property is defined in that cvterm.';
- --
- -- Name: COLUMN phylotreeprop.value; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN phylotreeprop.value IS 'The value of the property, represented as text.
- Numeric values are converted to their text representation. This is less efficient than
- using native database types, but is easier to query.';
- --
- -- Name: COLUMN phylotreeprop.rank; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN phylotreeprop.rank IS 'Property-Value ordering. Any
- phylotree can have multiple values for any particular property type
- these are ordered in a list using rank, counting from zero. For
- properties that are single-valued rather than multi-valued, the
- default 0 value should be used';
- --
- -- Name: phylotreeprop_phylotreeprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE phylotreeprop_phylotreeprop_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: phylotreeprop_phylotreeprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE phylotreeprop_phylotreeprop_id_seq OWNED BY phylotreeprop.phylotreeprop_id;
- --
- -- Name: project; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE project
- ALTER project_id TYPE bigint,
- ALTER description TYPE text,
- ALTER description DROP NOT NULL;
- --
- -- Name: TABLE project; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE project IS 'Standard Chado flexible property table for projects.';
- --
- -- Name: project_analysis; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE project_analysis (
- project_analysis_id bigint NOT NULL,
- project_id bigint NOT NULL,
- analysis_id bigint NOT NULL,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: TABLE project_analysis; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE project_analysis IS 'Links an analysis to a project that may contain multiple analyses.
- The rank column can be used to specify a simple ordering in which analyses were executed.';
- --
- -- Name: project_analysis_project_analysis_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE project_analysis_project_analysis_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: project_analysis_project_analysis_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE project_analysis_project_analysis_id_seq OWNED BY project_analysis.project_analysis_id;
- --
- -- Name: project_contact; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE project_contact
- ALTER project_contact_id TYPE bigint,
- ALTER project_id TYPE bigint,
- ALTER contact_id TYPE bigint;
- --
- -- Name: TABLE project_contact; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE project_contact IS 'Linking table for associating projects and contacts.';
- --
- -- Name: project_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE project_dbxref (
- project_dbxref_id bigint NOT NULL,
- project_id bigint NOT NULL,
- dbxref_id bigint NOT NULL,
- is_current boolean DEFAULT true NOT NULL
- );
- --
- -- Name: TABLE project_dbxref; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE project_dbxref IS 'project_dbxref links a project to dbxrefs.';
- --
- -- Name: COLUMN project_dbxref.is_current; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN project_dbxref.is_current IS 'The is_current boolean indicates whether the linked dbxref is the current -official- dbxref for the linked project.';
- --
- -- Name: project_dbxref_project_dbxref_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE project_dbxref_project_dbxref_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: project_dbxref_project_dbxref_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE project_dbxref_project_dbxref_id_seq OWNED BY project_dbxref.project_dbxref_id;
- --
- -- Name: project_feature; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE project_feature (
- project_feature_id bigint NOT NULL,
- feature_id bigint NOT NULL,
- project_id bigint NOT NULL
- );
- --
- -- Name: TABLE project_feature; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE project_feature IS 'This table is intended associate records in the feature table with a project.';
- --
- -- Name: project_feature_project_feature_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE project_feature_project_feature_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: project_feature_project_feature_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE project_feature_project_feature_id_seq OWNED BY project_feature.project_feature_id;
- --
- -- Name: project_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE project_pub
- ALTER project_pub_id TYPE bigint,
- ALTER project_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- COMMENT ON TABLE project_pub IS 'Linking table for associating projects and publications.';
- --
- -- Name: project_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE project_relationship
- ALTER project_relationship_id TYPE bigint,
- ALTER subject_project_id TYPE bigint,
- ALTER object_project_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: TABLE project_relationship; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE project_relationship IS 'Linking table for relating projects to each other. For example, a
- given project could be composed of several smaller subprojects';
- --
- -- Name: COLUMN project_relationship.type_id; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON COLUMN project_relationship.type_id IS 'The cvterm type of the relationship being stated, such as "part of".';
- --
- -- Name: project_stock; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE project_stock (
- project_stock_id bigint NOT NULL,
- stock_id bigint NOT NULL,
- project_id bigint NOT NULL
- );
- --
- -- Name: TABLE project_stock; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE project_stock IS 'This table is intended associate records in the stock table with a project.';
- --
- -- Name: project_stock_project_stock_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE project_stock_project_stock_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: projectprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE projectprop
- ALTER projectprop_id TYPE bigint,
- ALTER project_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: protocol; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE protocol
- ALTER protocol_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER pub_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
- --
- -- Name: protocolparam; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE protocolparam
- ALTER protocolparam_id TYPE bigint,
- ALTER protocol_id TYPE bigint,
- ALTER datatype_id TYPE bigint,
- ALTER unittype_id TYPE bigint;
-
- --
- -- Name: pub_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE pub_dbxref
- ALTER pub_dbxref_id TYPE bigint,
- ALTER pub_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
-
- --
- -- Name: pub_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE pub_relationship
- ALTER pub_relationship_id TYPE bigint,
- ALTER subject_id TYPE bigint,
- ALTER object_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: pubauthor; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE pubauthor
- ALTER pubauthor_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: pubauthor_contact; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE pubauthor_contact (
- pubauthor_contact_id bigint NOT NULL,
- contact_id bigint NOT NULL,
- pubauthor_id bigint NOT NULL
- );
- --
- -- Name: TABLE pubauthor_contact; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE pubauthor_contact IS 'An author on a publication may have a corresponding entry in the contact table and this table can link the two.';
- --
- -- Name: pubauthor_contact_pubauthor_contact_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE pubauthor_contact_pubauthor_contact_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: pubauthor_contact_pubauthor_contact_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE pubauthor_contact_pubauthor_contact_id_seq OWNED BY pubauthor_contact.pubauthor_contact_id;
- --
- -- Name: pubprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE pubprop
- ALTER pubprop_id TYPE bigint,
- ALTER pub_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: quantification; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE quantification
- ALTER quantification_id TYPE bigint,
- ALTER acquisition_id TYPE bigint,
- ALTER operator_id TYPE bigint,
- ALTER protocol_id TYPE bigint,
- ALTER analysis_id TYPE bigint;
- --
- -- Name: quantification_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE quantification_relationship
- ALTER quantification_relationship_id TYPE bigint,
- ALTER subject_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER object_id TYPE bigint;
- --
- -- Name: quantificationprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE quantificationprop
- ALTER quantificationprop_id TYPE bigint,
- ALTER quantification_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: stock; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stock
- ALTER stock_id TYPE bigint,
- ALTER dbxref_id TYPE bigint,
- ALTER organism_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: stock_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stock_cvterm
- ALTER stock_cvterm_id TYPE bigint,
- ALTER stock_id TYPE bigint,
- ALTER cvterm_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- --
- -- Name: stock_cvtermprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stock_cvtermprop
- ALTER stock_cvtermprop_id TYPE bigint,
- ALTER stock_cvterm_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: stock_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stock_dbxref
- ALTER stock_dbxref_id TYPE bigint,
- ALTER stock_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
- --
- -- Name: stock_dbxrefprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stock_dbxrefprop
- ALTER stock_dbxrefprop_id TYPE bigint,
- ALTER stock_dbxref_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: stock_feature; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE stock_feature (
- stock_feature_id bigint NOT NULL,
- feature_id bigint NOT NULL,
- stock_id bigint NOT NULL,
- type_id bigint NOT NULL,
- rank integer DEFAULT 0 NOT NULL
- );
- --
- -- Name: TABLE stock_feature; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE stock_feature IS 'Links a stock to a feature.';
- --
- -- Name: stock_feature_stock_feature_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE stock_feature_stock_feature_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: stock_feature_stock_feature_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
- --
- ALTER SEQUENCE stock_feature_stock_feature_id_seq OWNED BY stock_feature.stock_feature_id;
- --
- -- Name: stock_featuremap; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE stock_featuremap (
- stock_featuremap_id bigint NOT NULL,
- featuremap_id bigint NOT NULL,
- stock_id bigint NOT NULL,
- type_id bigint
- );
- --
- -- Name: TABLE stock_featuremap; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE stock_featuremap IS 'Links a featuremap to a stock.';
- --
- -- Name: stock_featuremap_stock_featuremap_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE stock_featuremap_stock_featuremap_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: stock_genotype; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stock_genotype
- ALTER stock_genotype_id TYPE bigint,
- ALTER stock_id TYPE bigint,
- ALTER genotype_id TYPE bigint;
- --
- -- Name: stock_library; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE stock_library (
- stock_library_id bigint NOT NULL,
- library_id bigint NOT NULL,
- stock_id bigint NOT NULL
- );
- --
- -- Name: TABLE stock_library; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE stock_library IS 'Links a stock with a library.';
- --
- -- Name: stock_library_stock_library_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE stock_library_stock_library_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: stock_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stock_pub
- ALTER stock_pub_id TYPE bigint,
- ALTER stock_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- --
- -- Name: stock_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stock_relationship
- ALTER stock_relationship_id TYPE bigint,
- ALTER subject_id TYPE bigint,
- ALTER object_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: stock_relationship_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stock_relationship_cvterm
- ALTER stock_relationship_cvterm_id TYPE bigint,
- ALTER stock_relationship_id TYPE bigint,
- ALTER cvterm_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: stock_relationship_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stock_relationship_pub
- ALTER stock_relationship_pub_id TYPE bigint,
- ALTER stock_relationship_id TYPE bigint,
- ALTER pub_id TYPE bigint;
- --
- -- Name: stockcollection; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stockcollection
- ALTER stockcollection_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER contact_id TYPE bigint;
-
- --
- -- Name: stockcollection_db; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- CREATE TABLE stockcollection_db (
- stockcollection_db_id bigint NOT NULL,
- stockcollection_id bigint NOT NULL,
- db_id bigint NOT NULL
- );
- --
- -- Name: TABLE stockcollection_db; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON TABLE stockcollection_db IS 'Stock collections may be respresented
- by an external online database. This table associates a stock collection with
- a database where its member stocks can be found. Individual stock that are part
- of this collction should have entries in the stock_dbxref table with the same
- db_id record';
- --
- -- Name: stockcollection_db_stockcollection_db_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
- --
- CREATE SEQUENCE stockcollection_db_stockcollection_db_id_seq
- START WITH 1
- INCREMENT BY 1
- NO MINVALUE
- NO MAXVALUE
- CACHE 1;
- --
- -- Name: stockcollection_stock; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stockcollection_stock
- ALTER stockcollection_stock_id TYPE bigint,
- ALTER stockcollection_id TYPE bigint,
- ALTER stock_id TYPE bigint;
-
- --
- -- Name: stockcollectionprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stockcollectionprop
- ALTER stockcollectionprop_id TYPE bigint,
- ALTER stockcollection_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: stockprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stockprop
- ALTER stockprop_id TYPE bigint,
- ALTER stock_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: stockprop_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE stockprop_pub
- ALTER stockprop_pub_id TYPE biginT,
- ALTER stockprop_id TYPE bigint,
- ALTER pub_id TYPE bigint;
-
- --
- -- Name: study; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE study
- ALTER study_id TYPE bigint,
- ALTER contact_id TYPE bigint,
- ALTER pub_id TYPE bigint,
- ALTER dbxref_id TYPE bigint;
- --
- -- Name: study_assay; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE study_assay
- ALTER study_assay_id TYPE bigint,
- ALTER study_id TYPE bigint,
- ALTER assay_id TYPE bigint;
- --
- -- Name: studydesign; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE studydesign
- ALTER studydesign_id TYPE bigint,
- ALTER study_id TYPE bigint;
- --
- -- Name: studydesignprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE studydesignprop
- ALTER studydesignprop_id TYPE bigint,
- ALTER studydesign_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: studyfactor; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE studyfactor
- ALTER studyfactor_id TYPE bigint,
- ALTER studydesign_id TYPE bigint,
- ALTER type_id TYPE bigint;
-
- --
- -- Name: studyfactorvalue; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE studyfactorvalue
- ALTER studyfactorvalue_id TYPE bigint,
- ALTER studyfactor_id TYPE bigint,
- ALTER assay_id TYPE bigint;
-
- --
- -- Name: studyprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE studyprop
- ALTER studyprop_id TYPE bigint,
- ALTER study_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: studyprop_feature; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE studyprop_feature
- ALTER studyprop_feature_id TYPE bigint,
- ALTER studyprop_id TYPE bigint,
- ALTER feature_id TYPE bigint,
- ALTER type_id TYPE bigint;
- --
- -- Name: tableinfo; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE tableinfo
- ALTER tableinfo_Id TYPE bigint,
- ALTER view_on_table_id TYPE bigint,
- ALTER superclass_table_id TYPE bigint;
-
- --
- -- Name: treatment; Type: TABLE; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE treatment
- ALTER treatment_id TYPE bigint,
- ALTER biomaterial_id TYPE bigint,
- ALTER type_id TYPE bigint,
- ALTER protocol_id TYPE bigint;
-
- --
- -- Name: analysis_cvterm_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY analysis_cvterm ALTER COLUMN analysis_cvterm_id SET DEFAULT nextval('analysis_cvterm_analysis_cvterm_id_seq'::regclass);
- --
- -- Name: analysis_dbxref_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY analysis_dbxref ALTER COLUMN analysis_dbxref_id SET DEFAULT nextval('analysis_dbxref_analysis_dbxref_id_seq'::regclass);
- --
- -- Name: analysis_pub_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY analysis_pub ALTER COLUMN analysis_pub_id SET DEFAULT nextval('analysis_pub_analysis_pub_id_seq'::regclass);
- --
- -- Name: analysis_relationship_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY analysis_relationship ALTER COLUMN analysis_relationship_id SET DEFAULT nextval('analysis_relationship_analysis_relationship_id_seq'::regclass);
- --
- -- Name: dbprop_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY dbprop ALTER COLUMN dbprop_id SET DEFAULT nextval('dbprop_dbprop_id_seq'::regclass);
- --
- -- Name: feature_contact_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY feature_contact ALTER COLUMN feature_contact_id SET DEFAULT nextval('feature_contact_feature_contact_id_seq'::regclass);
- --
- -- Name: featuremap_contact_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featuremap_contact ALTER COLUMN featuremap_contact_id SET DEFAULT nextval('featuremap_contact_featuremap_contact_id_seq'::regclass);
- --
- -- Name: featuremap_dbxref_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featuremap_dbxref ALTER COLUMN featuremap_dbxref_id SET DEFAULT nextval('featuremap_dbxref_featuremap_dbxref_id_seq'::regclass);
- --
- -- Name: featuremap_organism_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featuremap_organism ALTER COLUMN featuremap_organism_id SET DEFAULT nextval('featuremap_organism_featuremap_organism_id_seq'::regclass);
- --
- -- Name: featuremapprop_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featuremapprop ALTER COLUMN featuremapprop_id SET DEFAULT nextval('featuremapprop_featuremapprop_id_seq'::regclass);
- --
- -- Name: featureposprop_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featureposprop
- ALTER COLUMN featureposprop_id SET DEFAULT nextval('featureposprop_featureposprop_id_seq'::regclass);
- --
- -- Name: library_contact_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_contact ALTER COLUMN library_contact_id SET DEFAULT nextval('library_contact_library_contact_id_seq'::regclass);
- --
- -- Name: library_expression_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_expression ALTER COLUMN library_expression_id SET DEFAULT nextval('library_expression_library_expression_id_seq'::regclass);
- --
- -- Name: library_expressionprop_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_expressionprop ALTER COLUMN library_expressionprop_id SET DEFAULT nextval('library_expressionprop_library_expressionprop_id_seq'::regclass);
- --
- -- Name: library_featureprop_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_featureprop ALTER COLUMN library_featureprop_id SET DEFAULT nextval('library_featureprop_library_featureprop_id_seq'::regclass);
- --
- -- Name: library_relationship_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_relationship ALTER COLUMN library_relationship_id SET DEFAULT nextval('library_relationship_library_relationship_id_seq'::regclass);
- --
- -- Name: library_relationship_pub_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_relationship_pub ALTER COLUMN library_relationship_pub_id SET DEFAULT nextval('library_relationship_pub_library_relationship_pub_id_seq'::regclass);
- --
- -- Name: nd_experiment_analysis_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY nd_experiment_analysis ALTER COLUMN nd_experiment_analysis_id SET DEFAULT nextval('nd_experiment_analysis_nd_experiment_analysis_id_seq'::regclass);
- --
- -- Name: organism_cvterm_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism_cvterm ALTER COLUMN organism_cvterm_id SET DEFAULT nextval('organism_cvterm_organism_cvterm_id_seq'::regclass);
- --
- -- Name: organism_cvtermprop_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism_cvtermprop ALTER COLUMN organism_cvtermprop_id SET DEFAULT nextval('organism_cvtermprop_organism_cvtermprop_id_seq'::regclass);
- --
- -- Name: organism_pub_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism_pub ALTER COLUMN organism_pub_id SET DEFAULT nextval('organism_pub_organism_pub_id_seq'::regclass);
- --
- -- Name: organism_relationship_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism_relationship ALTER COLUMN organism_relationship_id SET DEFAULT nextval('organism_relationship_organism_relationship_id_seq'::regclass);
- --
- -- Name: organismprop_pub_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organismprop_pub ALTER COLUMN organismprop_pub_id SET DEFAULT nextval('organismprop_pub_organismprop_pub_id_seq'::regclass);
- --
- -- Name: phenotypeprop_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY phenotypeprop ALTER COLUMN phenotypeprop_id SET DEFAULT nextval('phenotypeprop_phenotypeprop_id_seq'::regclass);
- --
- -- Name: phylotreeprop_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY phylotreeprop ALTER COLUMN phylotreeprop_id SET DEFAULT nextval('phylotreeprop_phylotreeprop_id_seq'::regclass);
- --
- -- Name: project_analysis_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY project_analysis ALTER COLUMN project_analysis_id SET DEFAULT nextval('project_analysis_project_analysis_id_seq'::regclass);
- --
- -- Name: project_dbxref_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY project_dbxref ALTER COLUMN project_dbxref_id SET DEFAULT nextval('project_dbxref_project_dbxref_id_seq'::regclass);
- --
- -- Name: project_feature_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY project_feature ALTER COLUMN project_feature_id SET DEFAULT nextval('project_feature_project_feature_id_seq'::regclass);
- --
- -- Name: project_stock_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY project_stock ALTER COLUMN project_stock_id SET DEFAULT nextval('project_stock_project_stock_id_seq'::regclass);
- --
- -- Name: pubauthor_contact_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY pubauthor_contact ALTER COLUMN pubauthor_contact_id SET DEFAULT nextval('pubauthor_contact_pubauthor_contact_id_seq'::regclass);
- --
- -- Name: stock_feature_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY stock_feature ALTER COLUMN stock_feature_id SET DEFAULT nextval('stock_feature_stock_feature_id_seq'::regclass);
- --
- -- Name: stock_featuremap_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY stock_featuremap ALTER COLUMN stock_featuremap_id SET DEFAULT nextval('stock_featuremap_stock_featuremap_id_seq'::regclass);
- --
- -- Name: stock_library_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY stock_library ALTER COLUMN stock_library_id SET DEFAULT nextval('stock_library_stock_library_id_seq'::regclass);
- --
- -- Name: stockcollection_db_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY stockcollection_db ALTER COLUMN stockcollection_db_id SET DEFAULT nextval('stockcollection_db_stockcollection_db_id_seq'::regclass);
- --
- -- Name: analysis_cvterm_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY analysis_cvterm
- ADD CONSTRAINT analysis_cvterm_c1 UNIQUE (analysis_id, cvterm_id, rank);
- --
- -- Name: analysis_cvterm_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY analysis_cvterm
- ADD CONSTRAINT analysis_cvterm_pkey PRIMARY KEY (analysis_cvterm_id);
- --
- -- Name: analysis_dbxref_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY analysis_dbxref
- ADD CONSTRAINT analysis_dbxref_c1 UNIQUE (analysis_id, dbxref_id);
- --
- -- Name: analysis_dbxref_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY analysis_dbxref
- ADD CONSTRAINT analysis_dbxref_pkey PRIMARY KEY (analysis_dbxref_id);
- --
- -- Name: analysis_pub_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY analysis_pub
- ADD CONSTRAINT analysis_pub_c1 UNIQUE (analysis_id, pub_id);
- --
- -- Name: analysis_pub_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY analysis_pub
- ADD CONSTRAINT analysis_pub_pkey PRIMARY KEY (analysis_pub_id);
- --
- -- Name: analysis_relationship_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY analysis_relationship
- ADD CONSTRAINT analysis_relationship_c1 UNIQUE (subject_id, object_id, type_id, rank);
- --
- -- Name: analysis_relationship_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY analysis_relationship
- ADD CONSTRAINT analysis_relationship_pkey PRIMARY KEY (analysis_relationship_id);
- --
- -- Name: contactprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY contactprop
- ADD CONSTRAINT contactprop_c1 UNIQUE (contact_id, type_id, rank);
- --
- -- Name: contactprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY contactprop
- ADD CONSTRAINT contactprop_pkey PRIMARY KEY (contactprop_id);
- --
- -- Name: dbprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY dbprop
- ADD CONSTRAINT dbprop_c1 UNIQUE (db_id, type_id, rank);
- --
- -- Name: dbprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY dbprop
- ADD CONSTRAINT dbprop_pkey PRIMARY KEY (dbprop_id);
- --
- -- Name: expression_cvterm_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY expression_cvterm
- DROP CONSTRAINT expression_cvterm_c1;
- ALTER TABLE ONLY expression_cvterm
- ADD CONSTRAINT expression_cvterm_c1 UNIQUE (expression_id, cvterm_id, rank, cvterm_type_id);
- --
- -- Name: contactprop_id; Type: DEFAULT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY contactprop ALTER COLUMN contactprop_id SET DEFAULT nextval('contactprop_contactprop_id_seq'::regclass);
- --
- -- Name: feature_contact_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY feature_contact
- ADD CONSTRAINT feature_contact_c1 UNIQUE (feature_id, contact_id);
- --
- -- Name: feature_contact_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY feature_contact
- ADD CONSTRAINT feature_contact_pkey PRIMARY KEY (feature_contact_id);
- --
- -- Name: featuremap_contact_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY featuremap_contact
- ADD CONSTRAINT featuremap_contact_c1 UNIQUE (featuremap_id, contact_id);
- --
- -- Name: featuremap_contact_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY featuremap_contact
- ADD CONSTRAINT featuremap_contact_pkey PRIMARY KEY (featuremap_contact_id);
- --
- -- Name: featuremap_dbxref_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY featuremap_dbxref
- ADD CONSTRAINT featuremap_dbxref_pkey PRIMARY KEY (featuremap_dbxref_id);
- --
- -- Name: featuremap_organism_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY featuremap_organism
- ADD CONSTRAINT featuremap_organism_c1 UNIQUE (featuremap_id, organism_id);
- --
- -- Name: featuremap_organism_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY featuremap_organism
- ADD CONSTRAINT featuremap_organism_pkey PRIMARY KEY (featuremap_organism_id);
- --
- -- Name: featuremapprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY featuremapprop
- ADD CONSTRAINT featuremapprop_c1 UNIQUE (featuremap_id, type_id, rank);
- --
- -- Name: featuremapprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY featuremapprop
- ADD CONSTRAINT featuremapprop_pkey PRIMARY KEY (featuremapprop_id);
- --
- -- Name: featureposprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY featureposprop
- ADD CONSTRAINT featureposprop_c1 UNIQUE (featurepos_id, type_id, rank);
- --
- -- Name: featureposprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY featureposprop
- ADD CONSTRAINT featureposprop_pkey PRIMARY KEY (featureposprop_id);
- --
- -- Name: library_contact_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY library_contact
- ADD CONSTRAINT library_contact_c1 UNIQUE (library_id, contact_id);
- --
- -- Name: library_contact_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY library_contact
- ADD CONSTRAINT library_contact_pkey PRIMARY KEY (library_contact_id);
- --
- -- Name: library_expression_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY library_expression
- ADD CONSTRAINT library_expression_c1 UNIQUE (library_id, expression_id);
- --
- -- Name: library_expression_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY library_expression
- ADD CONSTRAINT library_expression_pkey PRIMARY KEY (library_expression_id);
- --
- -- Name: library_expressionprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY library_expressionprop
- ADD CONSTRAINT library_expressionprop_c1 UNIQUE (library_expression_id, type_id, rank);
- --
- -- Name: library_expressionprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY library_expressionprop
- ADD CONSTRAINT library_expressionprop_pkey PRIMARY KEY (library_expressionprop_id);
- --
- -- Name: library_featureprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY library_featureprop
- ADD CONSTRAINT library_featureprop_c1 UNIQUE (library_feature_id, type_id, rank);
- --
- -- Name: library_featureprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY library_featureprop
- ADD CONSTRAINT library_featureprop_pkey PRIMARY KEY (library_featureprop_id);
- --
- -- Name: library_relationship_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY library_relationship
- ADD CONSTRAINT library_relationship_c1 UNIQUE (subject_id, object_id, type_id);
- --
- -- Name: library_relationship_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY library_relationship
- ADD CONSTRAINT library_relationship_pkey PRIMARY KEY (library_relationship_id);
- --
- -- Name: library_relationship_pub_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY library_relationship_pub
- ADD CONSTRAINT library_relationship_pub_c1 UNIQUE (library_relationship_id, pub_id);
- --
- -- Name: library_relationship_pub_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY library_relationship_pub
- ADD CONSTRAINT library_relationship_pub_pkey PRIMARY KEY (library_relationship_pub_id);
- --
- -- Name: nd_experiment_analysis_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY nd_experiment_analysis
- ADD CONSTRAINT nd_experiment_analysis_pkey PRIMARY KEY (nd_experiment_analysis_id);
- --
- -- Name: nd_experiment_project_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY nd_experiment_project
- ADD CONSTRAINT nd_experiment_project_c1 UNIQUE (project_id, nd_experiment_id);
- ALTER TABLE ONLY organism
- DROP CONSTRAINT organism_c1;
- ALTER TABLE ONLY organism
- ADD CONSTRAINT organism_c1 UNIQUE (genus, species, type_id, infraspecific_name);
- --
- -- Name: organism_cvterm_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY organism_cvterm
- ADD CONSTRAINT organism_cvterm_c1 UNIQUE (organism_id, cvterm_id, pub_id);
- --
- -- Name: organism_cvterm_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY organism_cvterm
- ADD CONSTRAINT organism_cvterm_pkey PRIMARY KEY (organism_cvterm_id);
- --
- -- Name: organism_cvtermprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY organism_cvtermprop
- ADD CONSTRAINT organism_cvtermprop_c1 UNIQUE (organism_cvterm_id, type_id, rank);
- --
- -- Name: organism_cvtermprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY organism_cvtermprop
- ADD CONSTRAINT organism_cvtermprop_pkey PRIMARY KEY (organism_cvtermprop_id);
- --
- -- Name: organism_pub_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY organism_pub
- ADD CONSTRAINT organism_pub_c1 UNIQUE (organism_id, pub_id);
- --
- -- Name: organism_pub_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY organism_pub
- ADD CONSTRAINT organism_pub_pkey PRIMARY KEY (organism_pub_id);
- --
- -- Name: organism_relationship_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY organism_relationship
- ADD CONSTRAINT organism_relationship_c1 UNIQUE (subject_id, object_id, type_id, rank);
- --
- -- Name: organism_relationship_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY organism_relationship
- ADD CONSTRAINT organism_relationship_pkey PRIMARY KEY (organism_relationship_id);
- --
- -- Name: organismprop_pub_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY organismprop_pub
- ADD CONSTRAINT organismprop_pub_c1 UNIQUE (organismprop_id, pub_id);
- --
- -- Name: organismprop_pub_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY organismprop_pub
- ADD CONSTRAINT organismprop_pub_pkey PRIMARY KEY (organismprop_pub_id);
- --
- -- Name: phenotypeprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY phenotypeprop
- ADD CONSTRAINT phenotypeprop_c1 UNIQUE (phenotype_id, type_id, rank);
- --
- -- Name: phenotypeprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY phenotypeprop
- ADD CONSTRAINT phenotypeprop_pkey PRIMARY KEY (phenotypeprop_id);
- --
- -- Name: phylotreeprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY phylotreeprop
- ADD CONSTRAINT phylotreeprop_c1 UNIQUE (phylotree_id, type_id, rank);
- --
- -- Name: phylotreeprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY phylotreeprop
- ADD CONSTRAINT phylotreeprop_pkey PRIMARY KEY (phylotreeprop_id);
- --
- -- Name: project_analysis_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY project_analysis
- ADD CONSTRAINT project_analysis_c1 UNIQUE (project_id, analysis_id);
- --
- -- Name: project_analysis_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY project_analysis
- ADD CONSTRAINT project_analysis_pkey PRIMARY KEY (project_analysis_id);
- --
- -- Name: project_dbxref_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY project_dbxref
- ADD CONSTRAINT project_dbxref_c1 UNIQUE (project_id, dbxref_id);
- --
- -- Name: project_dbxref_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY project_dbxref
- ADD CONSTRAINT project_dbxref_pkey PRIMARY KEY (project_dbxref_id);
- --
- -- Name: project_feature_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY project_feature
- ADD CONSTRAINT project_feature_c1 UNIQUE (feature_id, project_id);
- --
- -- Name: project_feature_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY project_feature
- ADD CONSTRAINT project_feature_pkey PRIMARY KEY (project_feature_id);
- --
- -- Name: project_stock_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY project_stock
- ADD CONSTRAINT project_stock_c1 UNIQUE (stock_id, project_id);
- --
- -- Name: project_stock_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY project_stock
- ADD CONSTRAINT project_stock_pkey PRIMARY KEY (project_stock_id);
- --
- -- Name: pubauthor_contact_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY pubauthor_contact
- ADD CONSTRAINT pubauthor_contact_c1 UNIQUE (contact_id, pubauthor_id);
- --
- -- Name: pubauthor_contact_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY pubauthor_contact
- ADD CONSTRAINT pubauthor_contact_pkey PRIMARY KEY (pubauthor_contact_id);
- --
- -- Name: stock_feature_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY stock_feature
- ADD CONSTRAINT stock_feature_c1 UNIQUE (feature_id, stock_id, type_id, rank);
- --
- -- Name: stock_feature_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY stock_feature
- ADD CONSTRAINT stock_feature_pkey PRIMARY KEY (stock_feature_id);
- --
- -- Name: stock_featuremap_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY stock_featuremap
- ADD CONSTRAINT stock_featuremap_c1 UNIQUE (featuremap_id, stock_id, type_id);
- --
- -- Name: stock_featuremap_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY stock_featuremap
- ADD CONSTRAINT stock_featuremap_pkey PRIMARY KEY (stock_featuremap_id);
- --
- -- Name: stock_library_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY stock_library
- ADD CONSTRAINT stock_library_c1 UNIQUE (library_id, stock_id);
- --
- -- Name: stock_library_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY stock_library
- ADD CONSTRAINT stock_library_pkey PRIMARY KEY (stock_library_id);
- --
- -- Name: stockcollection_db_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY stockcollection_db
- ADD CONSTRAINT stockcollection_db_c1 UNIQUE (stockcollection_id, db_id);
- --
- -- Name: stockcollection_db_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
- --
- ALTER TABLE ONLY stockcollection_db
- ADD CONSTRAINT stockcollection_db_pkey PRIMARY KEY (stockcollection_db_id);
- --
- -- Name: analysis_cvterm_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX analysis_cvterm_idx1 ON analysis_cvterm USING btree (analysis_id);
- --
- -- Name: analysis_cvterm_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX analysis_cvterm_idx2 ON analysis_cvterm USING btree (cvterm_id);
- --
- -- Name: analysis_dbxref_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX analysis_dbxref_idx1 ON analysis_dbxref USING btree (analysis_id);
- --
- -- Name: analysis_dbxref_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX analysis_dbxref_idx2 ON analysis_dbxref USING btree (dbxref_id);
- --
- -- Name: analysis_pub_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX analysis_pub_idx1 ON analysis_pub USING btree (analysis_id);
- --
- -- Name: analysis_pub_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX analysis_pub_idx2 ON analysis_pub USING btree (pub_id);
- --
- -- Name: analysis_relationship_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX analysis_relationship_idx1 ON analysis_relationship USING btree (subject_id);
- --
- -- Name: analysis_relationship_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX analysis_relationship_idx2 ON analysis_relationship USING btree (object_id);
- --
- -- Name: analysis_relationship_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX analysis_relationship_idx3 ON analysis_relationship USING btree (type_id);
- --
- -- Name: analysisfeatureprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- DROP INDEX analysisfeatureprop_idx1;
- CREATE INDEX analysisfeatureprop_idx1 ON analysisfeatureprop USING btree (analysisfeature_id);
- --
- -- Name: analysisfeatureprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- DROP INDEX analysisfeatureprop_idx2;
- CREATE INDEX analysisfeatureprop_idx2 ON analysisfeatureprop USING btree (type_id);
- --
- -- Name: contactprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX contactprop_idx1 ON contactprop USING btree (contact_id);
- --
- -- Name: contactprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX contactprop_idx2 ON contactprop USING btree (type_id);
- --
- -- Name: dbprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX dbprop_idx1 ON dbprop USING btree (db_id);
- --
- -- Name: dbprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX dbprop_idx2 ON dbprop USING btree (type_id);
- --
- -- Name: feature_contact_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX feature_contact_idx1 ON feature_contact USING btree (feature_id);
- --
- -- Name: feature_contact_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX feature_contact_idx2 ON feature_contact USING btree (contact_id);
- --
- -- Name: featuremap_contact_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX featuremap_contact_idx1 ON featuremap_contact USING btree (featuremap_id);
- --
- -- Name: featuremap_contact_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX featuremap_contact_idx2 ON featuremap_contact USING btree (contact_id);
- --
- -- Name: featuremap_dbxref_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX featuremap_dbxref_idx1 ON featuremap_dbxref USING btree (featuremap_id);
- --
- -- Name: featuremap_dbxref_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX featuremap_dbxref_idx2 ON featuremap_dbxref USING btree (dbxref_id);
- --
- -- Name: featuremap_organism_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX featuremap_organism_idx1 ON featuremap_organism USING btree (featuremap_id);
- --
- -- Name: featuremap_organism_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX featuremap_organism_idx2 ON featuremap_organism USING btree (organism_id);
- --
- -- Name: featuremapprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX featuremapprop_idx1 ON featuremapprop USING btree (featuremap_id);
- --
- -- Name: featuremapprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX featuremapprop_idx2 ON featuremapprop USING btree (type_id);
- --
- -- Name: featureposprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX featureposprop_idx1 ON featureposprop USING btree (featurepos_id);
- --
- -- Name: featureposprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX featureposprop_idx2 ON featureposprop USING btree (type_id);
- --
- -- Name: library_contact_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX library_contact_idx1 ON library USING btree (library_id);
- --
- -- Name: library_contact_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX library_contact_idx2 ON contact USING btree (contact_id);
- --
- -- Name: library_expression_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX library_expression_idx1 ON library_expression USING btree (library_id);
- --
- -- Name: library_expression_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX library_expression_idx2 ON library_expression USING btree (expression_id);
- --
- -- Name: library_expression_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX library_expression_idx3 ON library_expression USING btree (pub_id);
- --
- -- Name: library_expressionprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX library_expressionprop_idx1 ON library_expressionprop USING btree (library_expression_id);
- --
- -- Name: library_expressionprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX library_expressionprop_idx2 ON library_expressionprop USING btree (type_id);
- --
- -- Name: library_featureprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX library_featureprop_idx1 ON library_featureprop USING btree (library_feature_id);
- --
- -- Name: library_featureprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX library_featureprop_idx2 ON library_featureprop USING btree (type_id);
- --
- -- Name: library_relationship_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX library_relationship_idx1 ON library_relationship USING btree (subject_id);
- --
- -- Name: library_relationship_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX library_relationship_idx2 ON library_relationship USING btree (object_id);
- --
- -- Name: library_relationship_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX library_relationship_idx3 ON library_relationship USING btree (type_id);
- --
- -- Name: library_relationship_pub_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX library_relationship_pub_idx1 ON library_relationship_pub USING btree (library_relationship_id);
- --
- -- Name: library_relationship_pub_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX library_relationship_pub_idx2 ON library_relationship_pub USING btree (pub_id);
- --
- -- Name: nd_experiment_analysis_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_analysis_idx1 ON nd_experiment_analysis USING btree (nd_experiment_id);
- --
- -- Name: nd_experiment_analysis_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_analysis_idx2 ON nd_experiment_analysis USING btree (analysis_id);
- --
- -- Name: nd_experiment_analysis_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_analysis_idx3 ON nd_experiment_analysis USING btree (type_id);
- --
- -- Name: nd_experiment_contact_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_contact_idx1 ON nd_experiment_contact USING btree (nd_experiment_id);
- --
- -- Name: nd_experiment_contact_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_contact_idx2 ON nd_experiment_contact USING btree (contact_id);
- --
- -- Name: nd_experiment_dbxref_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_dbxref_idx1 ON nd_experiment_dbxref USING btree (nd_experiment_id);
- --
- -- Name: nd_experiment_dbxref_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_dbxref_idx2 ON nd_experiment_dbxref USING btree (dbxref_id);
- --
- -- Name: nd_experiment_genotype_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_genotype_idx1 ON nd_experiment_genotype USING btree (nd_experiment_id);
- --
- -- Name: nd_experiment_genotype_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_genotype_idx2 ON nd_experiment_genotype USING btree (genotype_id);
- --
- -- Name: nd_experiment_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_idx1 ON nd_experiment USING btree (nd_geolocation_id);
- --
- -- Name: nd_experiment_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_idx2 ON nd_experiment USING btree (type_id);
- --
- -- Name: nd_experiment_phenotype_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_phenotype_idx1 ON nd_experiment_phenotype USING btree (nd_experiment_id);
- --
- -- Name: nd_experiment_phenotype_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_phenotype_idx2 ON nd_experiment_phenotype USING btree (phenotype_id);
- --
- -- Name: nd_experiment_project_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_project_idx1 ON nd_experiment_project USING btree (project_id);
- --
- -- Name: nd_experiment_project_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_project_idx2 ON nd_experiment_project USING btree (nd_experiment_id);
- --
- -- Name: nd_experiment_protocol_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_protocol_idx1 ON nd_experiment_protocol USING btree (nd_experiment_id);
- --
- -- Name: nd_experiment_protocol_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_protocol_idx2 ON nd_experiment_protocol USING btree (nd_protocol_id);
- --
- -- Name: nd_experiment_stock_dbxref_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_stock_dbxref_idx1 ON nd_experiment_stock_dbxref USING btree (nd_experiment_stock_id);
- --
- -- Name: nd_experiment_stock_dbxref_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_stock_dbxref_idx2 ON nd_experiment_stock_dbxref USING btree (dbxref_id);
- --
- -- Name: nd_experiment_stock_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_stock_idx1 ON nd_experiment_stock USING btree (nd_experiment_id);
- --
- -- Name: nd_experiment_stock_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_stock_idx2 ON nd_experiment_stock USING btree (stock_id);
- --
- -- Name: nd_experiment_stock_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_stock_idx3 ON nd_experiment_stock USING btree (type_id);
- --
- -- Name: nd_experiment_stockprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_stockprop_idx1 ON nd_experiment_stockprop USING btree (nd_experiment_stock_id);
- --
- -- Name: nd_experiment_stockprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experiment_stockprop_idx2 ON nd_experiment_stockprop USING btree (type_id);
- --
- -- Name: nd_experimentprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experimentprop_idx1 ON nd_experimentprop USING btree (nd_experiment_id);
- --
- -- Name: nd_experimentprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_experimentprop_idx2 ON nd_experimentprop USING btree (type_id);
- --
- -- Name: nd_geolocation_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_geolocation_idx1 ON nd_geolocation USING btree (latitude);
- --
- -- Name: nd_geolocation_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_geolocation_idx2 ON nd_geolocation USING btree (longitude);
- --
- -- Name: nd_geolocation_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_geolocation_idx3 ON nd_geolocation USING btree (altitude);
- --
- -- Name: nd_geolocationprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_geolocationprop_idx1 ON nd_geolocationprop USING btree (nd_geolocation_id);
- --
- -- Name: nd_geolocationprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_geolocationprop_idx2 ON nd_geolocationprop USING btree (type_id);
- --
- -- Name: nd_protocol_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_protocol_idx1 ON nd_protocol USING btree (type_id);
- --
- -- Name: nd_protocol_reagent_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_protocol_reagent_idx1 ON nd_protocol_reagent USING btree (nd_protocol_id);
- --
- -- Name: nd_protocol_reagent_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_protocol_reagent_idx2 ON nd_protocol_reagent USING btree (reagent_id);
- --
- -- Name: nd_protocol_reagent_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_protocol_reagent_idx3 ON nd_protocol_reagent USING btree (type_id);
- --
- -- Name: nd_protocolprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_protocolprop_idx1 ON nd_protocolprop USING btree (nd_protocol_id);
- --
- -- Name: nd_protocolprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_protocolprop_idx2 ON nd_protocolprop USING btree (type_id);
- --
- -- Name: nd_reagent_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_reagent_idx1 ON nd_reagent USING btree (type_id);
- --
- -- Name: nd_reagent_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_reagent_idx2 ON nd_reagent USING btree (feature_id);
- --
- -- Name: nd_reagent_relationship_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_reagent_relationship_idx1 ON nd_reagent_relationship USING btree (subject_reagent_id);
- --
- -- Name: nd_reagent_relationship_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_reagent_relationship_idx2 ON nd_reagent_relationship USING btree (object_reagent_id);
- --
- -- Name: nd_reagent_relationship_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_reagent_relationship_idx3 ON nd_reagent_relationship USING btree (type_id);
- --
- -- Name: nd_reagentprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_reagentprop_idx1 ON nd_reagentprop USING btree (nd_reagent_id);
- --
- -- Name: nd_reagentprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX nd_reagentprop_idx2 ON nd_reagentprop USING btree (type_id);
- --
- -- Name: organism_cvterm_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX organism_cvterm_idx1 ON organism_cvterm USING btree (organism_id);
- --
- -- Name: organism_cvterm_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX organism_cvterm_idx2 ON organism_cvterm USING btree (cvterm_id);
- --
- -- Name: organism_cvtermprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX organism_cvtermprop_idx1 ON organism_cvtermprop USING btree (organism_cvterm_id);
- --
- -- Name: organism_cvtermprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX organism_cvtermprop_idx2 ON organism_cvtermprop USING btree (type_id);
- --
- -- Name: organism_pub_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX organism_pub_idx1 ON organism_pub USING btree (organism_id);
- --
- -- Name: organism_pub_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX organism_pub_idx2 ON organism_pub USING btree (pub_id);
- --
- -- Name: organism_relationship_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX organism_relationship_idx1 ON organism_relationship USING btree (subject_id);
- --
- -- Name: organism_relationship_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX organism_relationship_idx2 ON organism_relationship USING btree (object_id);
- --
- -- Name: organism_relationship_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX organism_relationship_idx3 ON organism_relationship USING btree (type_id);
- --
- -- Name: organismprop_pub_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX organismprop_pub_idx1 ON organismprop_pub USING btree (organismprop_id);
- --
- -- Name: organismprop_pub_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX organismprop_pub_idx2 ON organismprop_pub USING btree (pub_id);
- --
- -- Name: phenotypeprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX phenotypeprop_idx1 ON phenotypeprop USING btree (phenotype_id);
- --
- -- Name: phenotypeprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX phenotypeprop_idx2 ON phenotypeprop USING btree (type_id);
- --
- -- Name: phylonode_parent_phylonode_id_idx; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX phylonode_parent_phylonode_id_idx ON phylonode USING btree (parent_phylonode_id);
- --
- -- Name: INDEX phylotreeprop_c1; Type: COMMENT; Schema: public; Owner: chado
- --
- COMMENT ON INDEX phylotreeprop_c1 IS 'For any one phylotree, multivalued
- property-value pairs must be differentiated by rank.';
- --
- -- Name: phylotreeprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX phylotreeprop_idx1 ON phylotreeprop USING btree (phylotree_id);
- --
- -- Name: phylotreeprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX phylotreeprop_idx2 ON phylotreeprop USING btree (type_id);
- --
- -- Name: project_analysis_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX project_analysis_idx1 ON project_analysis USING btree (project_id);
- --
- -- Name: project_analysis_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX project_analysis_idx2 ON project_analysis USING btree (analysis_id);
- --
- -- Name: project_dbxref_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX project_dbxref_idx1 ON project_dbxref USING btree (project_id);
- --
- -- Name: project_dbxref_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX project_dbxref_idx2 ON project_dbxref USING btree (dbxref_id);
- --
- -- Name: project_feature_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX project_feature_idx1 ON project_feature USING btree (feature_id);
- --
- -- Name: project_feature_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX project_feature_idx2 ON project_feature USING btree (project_id);
- --
- -- Name: project_stock_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX project_stock_idx1 ON project_stock USING btree (stock_id);
- --
- -- Name: project_stock_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX project_stock_idx2 ON project_stock USING btree (project_id);
- --
- -- Name: pubauthor_contact_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX pubauthor_contact_idx1 ON pubauthor USING btree (pubauthor_id);
- --
- -- Name: pubauthor_contact_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX pubauthor_contact_idx2 ON contact USING btree (contact_id);
- --
- -- Name: stock_feature_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX stock_feature_idx1 ON stock_feature USING btree (stock_feature_id);
- --
- -- Name: stock_feature_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX stock_feature_idx2 ON stock_feature USING btree (feature_id);
- --
- -- Name: stock_feature_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX stock_feature_idx3 ON stock_feature USING btree (stock_id);
- --
- -- Name: stock_feature_idx4; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX stock_feature_idx4 ON stock_feature USING btree (type_id);
- --
- -- Name: stock_featuremap_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX stock_featuremap_idx1 ON stock_featuremap USING btree (featuremap_id);
- --
- -- Name: stock_featuremap_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX stock_featuremap_idx2 ON stock_featuremap USING btree (stock_id);
- --
- -- Name: stock_featuremap_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX stock_featuremap_idx3 ON stock_featuremap USING btree (type_id);
- --
- -- Name: stock_library_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX stock_library_idx1 ON stock_library USING btree (library_id);
- --
- -- Name: stock_library_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX stock_library_idx2 ON stock_library USING btree (stock_id);
- --
- -- Name: stockcollection_db_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX stockcollection_db_idx1 ON stockcollection_db USING btree (stockcollection_id);
- --
- -- Name: stockcollection_db_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX stockcollection_db_idx2 ON stockcollection_db USING btree (db_id);
- --
- -- Name: analysis_cvterm_analysis_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY analysis_cvterm
- ADD CONSTRAINT analysis_cvterm_analysis_id_fkey FOREIGN KEY (analysis_id) REFERENCES analysis(analysis_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: analysis_cvterm_cvterm_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY analysis_cvterm
- ADD CONSTRAINT analysis_cvterm_cvterm_id_fkey FOREIGN KEY (cvterm_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: analysis_dbxref_analysis_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY analysis_dbxref
- ADD CONSTRAINT analysis_dbxref_analysis_id_fkey FOREIGN KEY (analysis_id) REFERENCES analysis(analysis_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: analysis_dbxref_dbxref_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY analysis_dbxref
- ADD CONSTRAINT analysis_dbxref_dbxref_id_fkey FOREIGN KEY (dbxref_id) REFERENCES dbxref(dbxref_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: analysis_pub_analysis_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY analysis_pub
- ADD CONSTRAINT analysis_pub_analysis_id_fkey FOREIGN KEY (analysis_id) REFERENCES analysis(analysis_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: analysis_pub_pub_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY analysis_pub
- ADD CONSTRAINT analysis_pub_pub_id_fkey FOREIGN KEY (pub_id) REFERENCES pub(pub_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: analysis_relationship_object_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY analysis_relationship
- ADD CONSTRAINT analysis_relationship_object_id_fkey FOREIGN KEY (object_id) REFERENCES analysis(analysis_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: analysis_relationship_subject_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY analysis_relationship
- ADD CONSTRAINT analysis_relationship_subject_id_fkey FOREIGN KEY (subject_id) REFERENCES analysis(analysis_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: analysis_relationship_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY analysis_relationship
- ADD CONSTRAINT analysis_relationship_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: contactprop_contact_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY contactprop
- ADD CONSTRAINT contactprop_contact_id_fkey FOREIGN KEY (contact_id) REFERENCES contact(contact_id) ON DELETE CASCADE;
- --
- -- Name: contactprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY contactprop
- ADD CONSTRAINT contactprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE;
- --
- -- Name: dbprop_db_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY dbprop
- ADD CONSTRAINT dbprop_db_id_fkey FOREIGN KEY (db_id) REFERENCES db(db_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: dbprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY dbprop
- ADD CONSTRAINT dbprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: feature_contact_contact_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY feature_contact
- ADD CONSTRAINT feature_contact_contact_id_fkey FOREIGN KEY (contact_id) REFERENCES contact(contact_id) ON DELETE CASCADE;
- --
- -- Name: feature_contact_feature_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY feature_contact
- ADD CONSTRAINT feature_contact_feature_id_fkey FOREIGN KEY (feature_id) REFERENCES feature(feature_id) ON DELETE CASCADE;
- --
- -- Name: featuremap_contact_contact_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featuremap_contact
- ADD CONSTRAINT featuremap_contact_contact_id_fkey FOREIGN KEY (contact_id) REFERENCES contact(contact_id) ON DELETE CASCADE;
- --
- -- Name: featuremap_contact_featuremap_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featuremap_contact
- ADD CONSTRAINT featuremap_contact_featuremap_id_fkey FOREIGN KEY (featuremap_id) REFERENCES featuremap(featuremap_id) ON DELETE CASCADE;
- --
- -- Name: featuremap_dbxref_dbxref_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featuremap_dbxref
- ADD CONSTRAINT featuremap_dbxref_dbxref_id_fkey FOREIGN KEY (dbxref_id) REFERENCES dbxref(dbxref_id) ON DELETE CASCADE;
- --
- -- Name: featuremap_dbxref_featuremap_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featuremap_dbxref
- ADD CONSTRAINT featuremap_dbxref_featuremap_id_fkey FOREIGN KEY (featuremap_id) REFERENCES featuremap(featuremap_id) ON DELETE CASCADE;
- --
- -- Name: featuremap_organism_featuremap_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featuremap_organism
- ADD CONSTRAINT featuremap_organism_featuremap_id_fkey FOREIGN KEY (featuremap_id) REFERENCES featuremap(featuremap_id) ON DELETE CASCADE;
- --
- -- Name: featuremap_organism_organism_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featuremap_organism
- ADD CONSTRAINT featuremap_organism_organism_id_fkey FOREIGN KEY (organism_id) REFERENCES organism(organism_id) ON DELETE CASCADE;
- --
- -- Name: featuremapprop_featuremap_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featuremapprop
- ADD CONSTRAINT featuremapprop_featuremap_id_fkey FOREIGN KEY (featuremap_id) REFERENCES featuremap(featuremap_id) ON DELETE CASCADE;
- --
- -- Name: featuremapprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featuremapprop
- ADD CONSTRAINT featuremapprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE;
- --
- -- Name: featureposprop_featurepos_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featureposprop
- ADD CONSTRAINT featureposprop_featurepos_id_fkey FOREIGN KEY (featurepos_id) REFERENCES featurepos(featurepos_id) ON DELETE CASCADE;
- --
- -- Name: featureposprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY featureposprop
- ADD CONSTRAINT featureposprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE;
- --
- -- Name: library_contact_contact_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_contact
- ADD CONSTRAINT library_contact_contact_id_fkey FOREIGN KEY (contact_id) REFERENCES contact(contact_id) ON DELETE CASCADE;
- --
- -- Name: library_contact_library_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_contact
- ADD CONSTRAINT library_contact_library_id_fkey FOREIGN KEY (library_id) REFERENCES library(library_id) ON DELETE CASCADE;
- --
- -- Name: library_expression_expression_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_expression
- ADD CONSTRAINT library_expression_expression_id_fkey FOREIGN KEY (expression_id) REFERENCES expression(expression_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: library_expression_library_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_expression
- ADD CONSTRAINT library_expression_library_id_fkey FOREIGN KEY (library_id) REFERENCES library(library_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: library_expression_pub_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_expression
- ADD CONSTRAINT library_expression_pub_id_fkey FOREIGN KEY (pub_id) REFERENCES pub(pub_id);
- --
- -- Name: library_expressionprop_library_expression_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_expressionprop
- ADD CONSTRAINT library_expressionprop_library_expression_id_fkey FOREIGN KEY (library_expression_id) REFERENCES library_expression(library_expression_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: library_expressionprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_expressionprop
- ADD CONSTRAINT library_expressionprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id);
- --
- -- Name: library_featureprop_library_feature_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_featureprop
- ADD CONSTRAINT library_featureprop_library_feature_id_fkey FOREIGN KEY (library_feature_id) REFERENCES library_feature(library_feature_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: library_featureprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_featureprop
- ADD CONSTRAINT library_featureprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id);
- --
- -- Name: library_relationship_object_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_relationship
- ADD CONSTRAINT library_relationship_object_id_fkey FOREIGN KEY (object_id) REFERENCES library(library_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: library_relationship_pub_library_relationship_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_relationship_pub
- ADD CONSTRAINT library_relationship_pub_library_relationship_id_fkey FOREIGN KEY (library_relationship_id) REFERENCES library_relationship(library_relationship_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: library_relationship_pub_pub_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_relationship_pub
- ADD CONSTRAINT library_relationship_pub_pub_id_fkey FOREIGN KEY (pub_id) REFERENCES pub(pub_id);
- --
- -- Name: library_relationship_subject_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_relationship
- ADD CONSTRAINT library_relationship_subject_id_fkey FOREIGN KEY (subject_id) REFERENCES library(library_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: library_relationship_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY library_relationship
- ADD CONSTRAINT library_relationship_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id);
- --
- -- Name: nd_experiment_analysis_analysis_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY nd_experiment_analysis
- ADD CONSTRAINT nd_experiment_analysis_analysis_id_fkey FOREIGN KEY (analysis_id) REFERENCES analysis(analysis_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: nd_experiment_analysis_nd_experiment_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY nd_experiment_analysis
- ADD CONSTRAINT nd_experiment_analysis_nd_experiment_id_fkey FOREIGN KEY (nd_experiment_id) REFERENCES nd_experiment(nd_experiment_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: nd_experiment_analysis_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY nd_experiment_analysis
- ADD CONSTRAINT nd_experiment_analysis_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: nd_reagent_feature_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY nd_reagent
- ADD CONSTRAINT nd_reagent_feature_id_fkey FOREIGN KEY (feature_id) REFERENCES feature(feature_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: organism_cvterm_cvterm_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism_cvterm
- ADD CONSTRAINT organism_cvterm_cvterm_id_fkey FOREIGN KEY (cvterm_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: organism_cvterm_organism_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism_cvterm
- ADD CONSTRAINT organism_cvterm_organism_id_fkey FOREIGN KEY (organism_id) REFERENCES organism(organism_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: organism_cvterm_pub_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism_cvterm
- ADD CONSTRAINT organism_cvterm_pub_id_fkey FOREIGN KEY (pub_id) REFERENCES pub(pub_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: organism_cvtermprop_organism_cvterm_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism_cvtermprop
- ADD CONSTRAINT organism_cvtermprop_organism_cvterm_id_fkey FOREIGN KEY (organism_cvterm_id) REFERENCES organism_cvterm(organism_cvterm_id) ON DELETE CASCADE;
- --
- -- Name: organism_cvtermprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism_cvtermprop
- ADD CONSTRAINT organism_cvtermprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: organism_pub_organism_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism_pub
- ADD CONSTRAINT organism_pub_organism_id_fkey FOREIGN KEY (organism_id) REFERENCES organism(organism_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: organism_pub_pub_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism_pub
- ADD CONSTRAINT organism_pub_pub_id_fkey FOREIGN KEY (pub_id) REFERENCES pub(pub_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: organism_relationship_object_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism_relationship
- ADD CONSTRAINT organism_relationship_object_id_fkey FOREIGN KEY (object_id) REFERENCES organism(organism_id) ON DELETE CASCADE;
- --
- -- Name: organism_relationship_subject_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism_relationship
- ADD CONSTRAINT organism_relationship_subject_id_fkey FOREIGN KEY (subject_id) REFERENCES organism(organism_id) ON DELETE CASCADE;
- --
- -- Name: organism_relationship_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism_relationship
- ADD CONSTRAINT organism_relationship_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE;
- --
- -- Name: organism_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organism
- ADD CONSTRAINT organism_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE;
- --
- -- Name: organismprop_pub_organismprop_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organismprop_pub
- ADD CONSTRAINT organismprop_pub_organismprop_id_fkey FOREIGN KEY (organismprop_id) REFERENCES organismprop(organismprop_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: organismprop_pub_pub_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY organismprop_pub
- ADD CONSTRAINT organismprop_pub_pub_id_fkey FOREIGN KEY (pub_id) REFERENCES pub(pub_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: phenotypeprop_phenotype_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY phenotypeprop
- ADD CONSTRAINT phenotypeprop_phenotype_id_fkey FOREIGN KEY (phenotype_id) REFERENCES phenotype(phenotype_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: phenotypeprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY phenotypeprop
- ADD CONSTRAINT phenotypeprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: phylotreeprop_phylotree_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY phylotreeprop
- ADD CONSTRAINT phylotreeprop_phylotree_id_fkey FOREIGN KEY (phylotree_id) REFERENCES phylotree(phylotree_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: phylotreeprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY phylotreeprop
- ADD CONSTRAINT phylotreeprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: project_analysis_analysis_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY project_analysis
- ADD CONSTRAINT project_analysis_analysis_id_fkey FOREIGN KEY (analysis_id) REFERENCES analysis(analysis_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: project_analysis_project_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY project_analysis
- ADD CONSTRAINT project_analysis_project_id_fkey FOREIGN KEY (project_id) REFERENCES project(project_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: project_dbxref_dbxref_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY project_dbxref
- ADD CONSTRAINT project_dbxref_dbxref_id_fkey FOREIGN KEY (dbxref_id) REFERENCES dbxref(dbxref_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: project_dbxref_project_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY project_dbxref
- ADD CONSTRAINT project_dbxref_project_id_fkey FOREIGN KEY (project_id) REFERENCES project(project_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: project_feature_feature_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY project_feature
- ADD CONSTRAINT project_feature_feature_id_fkey FOREIGN KEY (feature_id) REFERENCES feature(feature_id) ON DELETE CASCADE;
- --
- -- Name: project_feature_project_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY project_feature
- ADD CONSTRAINT project_feature_project_id_fkey FOREIGN KEY (project_id) REFERENCES project(project_id) ON DELETE CASCADE;
- --
- -- Name: project_stock_project_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY project_stock
- ADD CONSTRAINT project_stock_project_id_fkey FOREIGN KEY (project_id) REFERENCES project(project_id) ON DELETE CASCADE;
- --
- -- Name: project_stock_stock_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY project_stock
- ADD CONSTRAINT project_stock_stock_id_fkey FOREIGN KEY (stock_id) REFERENCES stock(stock_id) ON DELETE CASCADE;
- --
- -- Name: pubauthor_contact_contact_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY pubauthor_contact
- ADD CONSTRAINT pubauthor_contact_contact_id_fkey FOREIGN KEY (contact_id) REFERENCES contact(contact_id) ON DELETE CASCADE;
- --
- -- Name: pubauthor_contact_pubauthor_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY pubauthor_contact
- ADD CONSTRAINT pubauthor_contact_pubauthor_id_fkey FOREIGN KEY (pubauthor_id) REFERENCES pubauthor(pubauthor_id) ON DELETE CASCADE;
- --
- -- Name: stock_feature_feature_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY stock_feature
- ADD CONSTRAINT stock_feature_feature_id_fkey FOREIGN KEY (feature_id) REFERENCES feature(feature_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: stock_feature_stock_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY stock_feature
- ADD CONSTRAINT stock_feature_stock_id_fkey FOREIGN KEY (stock_id) REFERENCES stock(stock_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: stock_feature_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY stock_feature
- ADD CONSTRAINT stock_feature_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: stock_featuremap_featuremap_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY stock_featuremap
- ADD CONSTRAINT stock_featuremap_featuremap_id_fkey FOREIGN KEY (featuremap_id) REFERENCES featuremap(featuremap_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: stock_featuremap_stock_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY stock_featuremap
- ADD CONSTRAINT stock_featuremap_stock_id_fkey FOREIGN KEY (stock_id) REFERENCES stock(stock_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: stock_featuremap_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY stock_featuremap
- ADD CONSTRAINT stock_featuremap_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
- --
- -- Name: stock_library_library_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY stock_library
- ADD CONSTRAINT stock_library_library_id_fkey FOREIGN KEY (library_id) REFERENCES library(library_id) ON DELETE CASCADE;
- --
- -- Name: stock_library_stock_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY stock_library
- ADD CONSTRAINT stock_library_stock_id_fkey FOREIGN KEY (stock_id) REFERENCES stock(stock_id) ON DELETE CASCADE;
- --
- -- Name: stockcollection_db_db_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY stockcollection_db
- ADD CONSTRAINT stockcollection_db_db_id_fkey FOREIGN KEY (db_id) REFERENCES db(db_id) ON DELETE CASCADE;
- --
- -- Name: stockcollection_db_stockcollection_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
- --
- ALTER TABLE ONLY stockcollection_db
- ADD CONSTRAINT stockcollection_db_stockcollection_id_fkey FOREIGN KEY (stockcollection_id) REFERENCES stockcollection(stockcollection_id) ON DELETE CASCADE;
- --
- -- Name: binloc_boxrange; Type: INDEX; Schema: public; Owner: chado; Tablespace:
- --
- CREATE INDEX binloc_boxrange ON featureloc USING gist (boxrange(fmin, fmax));
- SET search_path = so,public,pg_catalog;
- --
- -- Name: mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mrna AS
- SELECT feature.feature_id AS mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((cvterm.name)::text = 'mRNA_with_frameshift'::text) OR ((cvterm.name)::text = 'monocistronic_mRNA'::text)) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'exemplar_mRNA'::text)) OR ((cvterm.name)::text = 'capped_mRNA'::text)) OR ((cvterm.name)::text = 'polyadenylated_mRNA'::text)) OR ((cvterm.name)::text = 'trans_spliced_mRNA'::text)) OR ((cvterm.name)::text = 'edited_mRNA'::text)) OR ((cvterm.name)::text = 'consensus_mRNA'::text)) OR ((cvterm.name)::text = 'recoded_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_2_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_codon_redefinition'::text)) OR ((cvterm.name)::text = 'mRNA'::text));
- --
- -- Name: a_box; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW a_box AS
- SELECT feature.feature_id AS a_box_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'A_box_type_1'::text) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'A_box'::text));
- --
- -- Name: a_box_type_1; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW a_box_type_1 AS
- SELECT feature.feature_id AS a_box_type_1_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'A_box_type_1'::text);
- --
- -- Name: a_box_type_2; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW a_box_type_2 AS
- SELECT feature.feature_id AS a_box_type_2_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'A_box_type_2'::text);
- --
- -- Name: a_minor_rna_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW a_minor_rna_motif AS
- SELECT feature.feature_id AS a_minor_rna_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'A_minor_RNA_motif'::text);
- --
- -- Name: a_to_c_transversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW a_to_c_transversion AS
- SELECT feature.feature_id AS a_to_c_transversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'A_to_C_transversion'::text);
- --
- -- Name: a_to_g_transition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW a_to_g_transition AS
- SELECT feature.feature_id AS a_to_g_transition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'A_to_G_transition'::text);
- --
- -- Name: a_to_t_transversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW a_to_t_transversion AS
- SELECT feature.feature_id AS a_to_t_transversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'A_to_T_transversion'::text);
- --
- -- Name: aberrant_processed_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW aberrant_processed_transcript AS
- SELECT feature.feature_id AS aberrant_processed_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'aberrant_processed_transcript'::text);
- --
- -- Name: active_peptide; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW active_peptide AS
- SELECT feature.feature_id AS active_peptide_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'active_peptide'::text);
- --
- -- Name: adaptive_island; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW adaptive_island AS
- SELECT feature.feature_id AS adaptive_island_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'adaptive_island'::text);
- --
- -- Name: alanine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW alanine AS
- SELECT feature.feature_id AS alanine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'alanine'::text);
- --
- -- Name: alanine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW alanine_trna_primary_transcript AS
- SELECT feature.feature_id AS alanine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'alanine_tRNA_primary_transcript'::text);
- --
- -- Name: alanyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW alanyl_trna AS
- SELECT feature.feature_id AS alanyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'alanyl_tRNA'::text);
- --
- -- Name: allele; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW allele AS
- SELECT feature.feature_id AS allele_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'polymorphic_sequence_variant'::text) OR ((cvterm.name)::text = 'allele'::text));
- --
- -- Name: allelically_excluded; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW allelically_excluded AS
- SELECT feature.feature_id AS allelically_excluded_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'allelically_excluded'::text);
- --
- -- Name: allelically_excluded_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW allelically_excluded_gene AS
- SELECT feature.feature_id AS allelically_excluded_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'allelically_excluded_gene'::text);
- --
- -- Name: allopolyploid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW allopolyploid AS
- SELECT feature.feature_id AS allopolyploid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'allopolyploid'::text);
- --
- -- Name: alpha_beta_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW alpha_beta_motif AS
- SELECT feature.feature_id AS alpha_beta_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'alpha_beta_motif'::text);
- --
- -- Name: alpha_helix; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW alpha_helix AS
- SELECT feature.feature_id AS alpha_helix_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'alpha_helix'::text);
- --
- -- Name: alteration_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW alteration_attribute AS
- SELECT feature.feature_id AS alteration_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((cvterm.name)::text = 'chromosomal_variation_attribute'::text) OR ((cvterm.name)::text = 'insertion_attribute'::text)) OR ((cvterm.name)::text = 'inversion_attribute'::text)) OR ((cvterm.name)::text = 'translocaton_attribute'::text)) OR ((cvterm.name)::text = 'duplication_attribute'::text)) OR ((cvterm.name)::text = 'intrachromosomal'::text)) OR ((cvterm.name)::text = 'interchromosomal'::text)) OR ((cvterm.name)::text = 'tandem'::text)) OR ((cvterm.name)::text = 'direct'::text)) OR ((cvterm.name)::text = 'inverted'::text)) OR ((cvterm.name)::text = 'pericentric'::text)) OR ((cvterm.name)::text = 'paracentric'::text)) OR ((cvterm.name)::text = 'reciprocal'::text)) OR ((cvterm.name)::text = 'insertional'::text)) OR ((cvterm.name)::text = 'free'::text)) OR ((cvterm.name)::text = 'alteration_attribute'::text));
- --
- -- Name: alternate_sequence_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW alternate_sequence_site AS
- SELECT feature.feature_id AS alternate_sequence_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'alternate_sequence_site'::text);
- --
- -- Name: alternatively_spliced; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW alternatively_spliced AS
- SELECT feature.feature_id AS alternatively_spliced_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'alternatively_spliced'::text);
- --
- -- Name: alternatively_spliced_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW alternatively_spliced_transcript AS
- SELECT feature.feature_id AS alternatively_spliced_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'alternatively_spliced_transcript'::text);
- --
- -- Name: ambisense_ssrna_viral_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ambisense_ssrna_viral_sequence AS
- SELECT feature.feature_id AS ambisense_ssrna_viral_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text);
- --
- -- Name: amino_acid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW amino_acid AS
- SELECT feature.feature_id AS amino_acid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'catalytic_residue'::text) OR ((cvterm.name)::text = 'modified_amino_acid_feature'::text)) OR ((cvterm.name)::text = 'alanine'::text)) OR ((cvterm.name)::text = 'valine'::text)) OR ((cvterm.name)::text = 'leucine'::text)) OR ((cvterm.name)::text = 'isoleucine'::text)) OR ((cvterm.name)::text = 'proline'::text)) OR ((cvterm.name)::text = 'tryptophan'::text)) OR ((cvterm.name)::text = 'phenylalanine'::text)) OR ((cvterm.name)::text = 'methionine'::text)) OR ((cvterm.name)::text = 'glycine'::text)) OR ((cvterm.name)::text = 'serine'::text)) OR ((cvterm.name)::text = 'threonine'::text)) OR ((cvterm.name)::text = 'tyrosine'::text)) OR ((cvterm.name)::text = 'cysteine'::text)) OR ((cvterm.name)::text = 'glutamine'::text)) OR ((cvterm.name)::text = 'asparagine'::text)) OR ((cvterm.name)::text = 'lysine'::text)) OR ((cvterm.name)::text = 'arginine'::text)) OR ((cvterm.name)::text = 'histidine'::text)) OR ((cvterm.name)::text = 'aspartic_acid'::text)) OR ((cvterm.name)::text = 'glutamic_acid'::text)) OR ((cvterm.name)::text = 'selenocysteine'::text)) OR ((cvterm.name)::text = 'pyrrolysine'::text)) OR ((cvterm.name)::text = 'modified_glycine'::text)) OR ((cvterm.name)::text = 'modified_L_alanine'::text)) OR ((cvterm.name)::text = 'modified_L_asparagine'::text)) OR ((cvterm.name)::text = 'modified_L_aspartic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_cysteine'::text)) OR ((cvterm.name)::text = 'modified_L_glutamic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_threonine'::text)) OR ((cvterm.name)::text = 'modified_L_tryptophan'::text)) OR ((cvterm.name)::text = 'modified_L_glutamine'::text)) OR ((cvterm.name)::text = 'modified_L_methionine'::text)) OR ((cvterm.name)::text = 'modified_L_isoleucine'::text)) OR ((cvterm.name)::text = 'modified_L_phenylalanine'::text)) OR ((cvterm.name)::text = 'modified_L_histidine'::text)) OR ((cvterm.name)::text = 'modified_L_serine'::text)) OR ((cvterm.name)::text = 'modified_L_lysine'::text)) OR ((cvterm.name)::text = 'modified_L_leucine'::text)) OR ((cvterm.name)::text = 'modified_L_selenocysteine'::text)) OR ((cvterm.name)::text = 'modified_L_valine'::text)) OR ((cvterm.name)::text = 'modified_L_proline'::text)) OR ((cvterm.name)::text = 'modified_L_tyrosine'::text)) OR ((cvterm.name)::text = 'modified_L_arginine'::text)) OR ((cvterm.name)::text = 'amino_acid'::text));
- --
- -- Name: amino_acid_deletion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW amino_acid_deletion AS
- SELECT feature.feature_id AS amino_acid_deletion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'amino_acid_deletion'::text);
- --
- -- Name: amino_acid_insertion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW amino_acid_insertion AS
- SELECT feature.feature_id AS amino_acid_insertion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'amino_acid_insertion'::text);
- --
- -- Name: amino_acid_substitution; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW amino_acid_substitution AS
- SELECT feature.feature_id AS amino_acid_substitution_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'conservative_amino_acid_substitution'::text) OR ((cvterm.name)::text = 'non_conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'amino_acid_substitution'::text));
- --
- -- Name: amplification_origin; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW amplification_origin AS
- SELECT feature.feature_id AS amplification_origin_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'amplification_origin'::text);
- --
- -- Name: anchor_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW anchor_binding_site AS
- SELECT feature.feature_id AS anchor_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'anchor_binding_site'::text);
- --
- -- Name: anchor_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW anchor_region AS
- SELECT feature.feature_id AS anchor_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'anchor_region'::text);
- --
- -- Name: aneuploid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW aneuploid AS
- SELECT feature.feature_id AS aneuploid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'hyperploid'::text) OR ((cvterm.name)::text = 'hypoploid'::text)) OR ((cvterm.name)::text = 'aneuploid'::text));
- --
- -- Name: aneuploid_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW aneuploid_chromosome AS
- SELECT feature.feature_id AS aneuploid_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'inversion_derived_aneuploid_chromosome'::text) OR ((cvterm.name)::text = 'aneuploid_chromosome'::text));
- --
- -- Name: annotation_directed_improved_draft; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW annotation_directed_improved_draft AS
- SELECT feature.feature_id AS annotation_directed_improved_draft_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'annotation_directed_improved_draft'::text);
- --
- -- Name: anticodon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW anticodon AS
- SELECT feature.feature_id AS anticodon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'anticodon'::text);
- --
- -- Name: anticodon_loop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW anticodon_loop AS
- SELECT feature.feature_id AS anticodon_loop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'anticodon_loop'::text);
- --
- -- Name: antiparallel_beta_strand; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW antiparallel_beta_strand AS
- SELECT feature.feature_id AS antiparallel_beta_strand_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'antiparallel_beta_strand'::text);
- --
- -- Name: antisense; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW antisense AS
- SELECT feature.feature_id AS antisense_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'antisense'::text);
- --
- -- Name: antisense_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW antisense_primary_transcript AS
- SELECT feature.feature_id AS antisense_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'antisense_primary_transcript'::text);
- --
- -- Name: antisense_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW antisense_rna AS
- SELECT feature.feature_id AS antisense_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'MicF_RNA'::text) OR ((cvterm.name)::text = 'antisense_RNA'::text));
- --
- -- Name: apicoplast_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW apicoplast_chromosome AS
- SELECT feature.feature_id AS apicoplast_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'apicoplast_chromosome'::text);
- --
- -- Name: apicoplast_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW apicoplast_gene AS
- SELECT feature.feature_id AS apicoplast_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'apicoplast_gene'::text);
- --
- -- Name: apicoplast_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW apicoplast_sequence AS
- SELECT feature.feature_id AS apicoplast_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'apicoplast_sequence'::text);
- --
- -- Name: aptamer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW aptamer AS
- SELECT feature.feature_id AS aptamer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'DNA_aptamer'::text) OR ((cvterm.name)::text = 'RNA_aptamer'::text)) OR ((cvterm.name)::text = 'aptamer'::text));
- --
- -- Name: archaeal_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW archaeal_intron AS
- SELECT feature.feature_id AS archaeal_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'archaeal_intron'::text);
- --
- -- Name: archaeosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW archaeosine AS
- SELECT feature.feature_id AS archaeosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'archaeosine'::text);
- --
- -- Name: arg_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW arg_trna_primary_transcript AS
- SELECT feature.feature_id AS arg_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'arginine_tRNA_primary_transcript'::text);
- --
- -- Name: arginine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW arginine AS
- SELECT feature.feature_id AS arginine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'arginine'::text);
- --
- -- Name: arginyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW arginyl_trna AS
- SELECT feature.feature_id AS arginyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'arginyl_tRNA'::text);
- --
- -- Name: ars; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ars AS
- SELECT feature.feature_id AS ars_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'ARS'::text);
- --
- -- Name: asparagine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW asparagine AS
- SELECT feature.feature_id AS asparagine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'asparagine'::text);
- --
- -- Name: asparagine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW asparagine_trna_primary_transcript AS
- SELECT feature.feature_id AS asparagine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'asparagine_tRNA_primary_transcript'::text);
- --
- -- Name: asparaginyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW asparaginyl_trna AS
- SELECT feature.feature_id AS asparaginyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'asparaginyl_tRNA'::text);
- --
- -- Name: aspartic_acid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW aspartic_acid AS
- SELECT feature.feature_id AS aspartic_acid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'aspartic_acid'::text);
- --
- -- Name: aspartic_acid_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW aspartic_acid_trna_primary_transcript AS
- SELECT feature.feature_id AS aspartic_acid_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'aspartic_acid_tRNA_primary_transcript'::text);
- --
- -- Name: aspartyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW aspartyl_trna AS
- SELECT feature.feature_id AS aspartyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'aspartyl_tRNA'::text);
- --
- -- Name: aspe_primer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW aspe_primer AS
- SELECT feature.feature_id AS aspe_primer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'ASPE_primer'::text);
- --
- -- Name: assembly; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW assembly AS
- SELECT feature.feature_id AS assembly_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((cvterm.name)::text = 'sequence_assembly'::text) OR ((cvterm.name)::text = 'fragment_assembly'::text)) OR ((cvterm.name)::text = 'supercontig'::text)) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'tiling_path'::text)) OR ((cvterm.name)::text = 'virtual_sequence'::text)) OR ((cvterm.name)::text = 'golden_path'::text)) OR ((cvterm.name)::text = 'ultracontig'::text)) OR ((cvterm.name)::text = 'expressed_sequence_assembly'::text)) OR ((cvterm.name)::text = 'fingerprint_map'::text)) OR ((cvterm.name)::text = 'STS_map'::text)) OR ((cvterm.name)::text = 'RH_map'::text)) OR ((cvterm.name)::text = 'assembly'::text));
- --
- -- Name: assembly_component; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW assembly_component AS
- SELECT feature.feature_id AS assembly_component_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((cvterm.name)::text = 'contig'::text) OR ((cvterm.name)::text = 'read'::text)) OR ((cvterm.name)::text = 'restriction_fragment'::text)) OR ((cvterm.name)::text = 'golden_path_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_fragment'::text)) OR ((cvterm.name)::text = 'gap'::text)) OR ((cvterm.name)::text = 'sonicate_fragment'::text)) OR ((cvterm.name)::text = 'paired_end_fragment'::text)) OR ((cvterm.name)::text = 'read_pair'::text)) OR ((cvterm.name)::text = 'contig_read'::text)) OR ((cvterm.name)::text = 'BAC_end'::text)) OR ((cvterm.name)::text = 'dye_terminator_read'::text)) OR ((cvterm.name)::text = 'pyrosequenced_read'::text)) OR ((cvterm.name)::text = 'ligation_based_read'::text)) OR ((cvterm.name)::text = 'polymerase_synthesis_read'::text)) OR ((cvterm.name)::text = 'PAC_end'::text)) OR ((cvterm.name)::text = 'YAC_end'::text)) OR ((cvterm.name)::text = 'clone_end'::text)) OR ((cvterm.name)::text = 'RFLP_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'assembly_component'::text));
- --
- -- Name: assembly_error_correction; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW assembly_error_correction AS
- SELECT feature.feature_id AS assembly_error_correction_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'assembly_error_correction'::text);
- --
- -- Name: assortment_derived_aneuploid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW assortment_derived_aneuploid AS
- SELECT feature.feature_id AS assortment_derived_aneuploid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'assortment_derived_aneuploid'::text);
- --
- -- Name: assortment_derived_deficiency; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW assortment_derived_deficiency AS
- SELECT feature.feature_id AS assortment_derived_deficiency_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'assortment_derived_deficiency'::text);
- --
- -- Name: assortment_derived_deficiency_plus_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW assortment_derived_deficiency_plus_duplication AS
- SELECT feature.feature_id AS assortment_derived_deficiency_plus_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'assortment_derived_deficiency_plus_duplication'::text);
- --
- -- Name: assortment_derived_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW assortment_derived_duplication AS
- SELECT feature.feature_id AS assortment_derived_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'assortment_derived_duplication'::text);
- --
- -- Name: assortment_derived_variation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW assortment_derived_variation AS
- SELECT feature.feature_id AS assortment_derived_variation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'assortment_derived_duplication'::text) OR ((cvterm.name)::text = 'assortment_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'assortment_derived_deficiency'::text)) OR ((cvterm.name)::text = 'assortment_derived_aneuploid'::text)) OR ((cvterm.name)::text = 'assortment_derived_variation'::text));
- --
- -- Name: asx_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW asx_motif AS
- SELECT feature.feature_id AS asx_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'asx_motif'::text);
- --
- -- Name: asx_turn; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW asx_turn AS
- SELECT feature.feature_id AS asx_turn_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'asx_turn_left_handed_type_one'::text) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'asx_turn'::text));
- --
- -- Name: asx_turn_left_handed_type_one; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW asx_turn_left_handed_type_one AS
- SELECT feature.feature_id AS asx_turn_left_handed_type_one_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'asx_turn_left_handed_type_one'::text);
- --
- -- Name: asx_turn_left_handed_type_two; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW asx_turn_left_handed_type_two AS
- SELECT feature.feature_id AS asx_turn_left_handed_type_two_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'asx_turn_left_handed_type_two'::text);
- --
- -- Name: asx_turn_right_handed_type_one; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW asx_turn_right_handed_type_one AS
- SELECT feature.feature_id AS asx_turn_right_handed_type_one_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'asx_turn_right_handed_type_one'::text);
- --
- -- Name: asx_turn_right_handed_type_two; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW asx_turn_right_handed_type_two AS
- SELECT feature.feature_id AS asx_turn_right_handed_type_two_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'asx_turn_right_handed_type_two'::text);
- --
- -- Name: asymmetric_rna_internal_loop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW asymmetric_rna_internal_loop AS
- SELECT feature.feature_id AS asymmetric_rna_internal_loop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'K_turn_RNA_motif'::text) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text));
- --
- -- Name: attb_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW attb_site AS
- SELECT feature.feature_id AS attb_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'attB_site'::text);
- --
- -- Name: attc_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW attc_site AS
- SELECT feature.feature_id AS attc_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'attC_site'::text);
- --
- -- Name: attctn_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW attctn_site AS
- SELECT feature.feature_id AS attctn_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'attCtn_site'::text);
- --
- -- Name: attenuator; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW attenuator AS
- SELECT feature.feature_id AS attenuator_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'attenuator'::text);
- --
- -- Name: atti_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW atti_site AS
- SELECT feature.feature_id AS atti_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'attI_site'::text);
- --
- -- Name: attl_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW attl_site AS
- SELECT feature.feature_id AS attl_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'attL_site'::text);
- --
- -- Name: attp_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW attp_site AS
- SELECT feature.feature_id AS attp_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'attP_site'::text);
- --
- -- Name: attr_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW attr_site AS
- SELECT feature.feature_id AS attr_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'attR_site'::text);
- --
- -- Name: au_rich_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW au_rich_element AS
- SELECT feature.feature_id AS au_rich_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'AU_rich_element'::text);
- --
- -- Name: autocatalytically_spliced_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW autocatalytically_spliced_intron AS
- SELECT feature.feature_id AS autocatalytically_spliced_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'group_I_intron'::text) OR ((cvterm.name)::text = 'group_II_intron'::text)) OR ((cvterm.name)::text = 'group_III_intron'::text)) OR ((cvterm.name)::text = 'group_IIA_intron'::text)) OR ((cvterm.name)::text = 'group_IIB_intron'::text)) OR ((cvterm.name)::text = 'autocatalytically_spliced_intron'::text));
- --
- -- Name: autopolyploid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW autopolyploid AS
- SELECT feature.feature_id AS autopolyploid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'autopolyploid'::text);
- --
- -- Name: autoregulated; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW autoregulated AS
- SELECT feature.feature_id AS autoregulated_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'negatively_autoregulated'::text) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'autoregulated'::text));
- --
- -- Name: autosynaptic_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW autosynaptic_chromosome AS
- SELECT feature.feature_id AS autosynaptic_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'dexstrosynaptic_chromosome'::text) OR ((cvterm.name)::text = 'laevosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'autosynaptic_chromosome'::text));
- --
- -- Name: b_box; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW b_box AS
- SELECT feature.feature_id AS b_box_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'B_box'::text);
- --
- -- Name: bac; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bac AS
- SELECT feature.feature_id AS bac_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'BAC'::text);
- --
- -- Name: bac_cloned_genomic_insert; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bac_cloned_genomic_insert AS
- SELECT feature.feature_id AS bac_cloned_genomic_insert_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'BAC_cloned_genomic_insert'::text);
- --
- -- Name: bac_end; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bac_end AS
- SELECT feature.feature_id AS bac_end_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'BAC_end'::text);
- --
- -- Name: bacterial_rnapol_promoter; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bacterial_rnapol_promoter AS
- SELECT feature.feature_id AS bacterial_rnapol_promoter_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text));
- --
- -- Name: bacterial_rnapol_promoter_sigma54; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bacterial_rnapol_promoter_sigma54 AS
- SELECT feature.feature_id AS bacterial_rnapol_promoter_sigma54_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text);
- --
- -- Name: bacterial_rnapol_promoter_sigma_70; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bacterial_rnapol_promoter_sigma_70 AS
- SELECT feature.feature_id AS bacterial_rnapol_promoter_sigma_70_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text);
- --
- -- Name: bacterial_terminator; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bacterial_terminator AS
- SELECT feature.feature_id AS bacterial_terminator_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text));
- --
- -- Name: base; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW base AS
- SELECT feature.feature_id AS base_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'modified_RNA_base_feature'::text) OR ((cvterm.name)::text = 'inosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanine'::text)) OR ((cvterm.name)::text = 'ribothymidine'::text)) OR ((cvterm.name)::text = 'modified_adenosine'::text)) OR ((cvterm.name)::text = 'modified_cytidine'::text)) OR ((cvterm.name)::text = 'modified_guanosine'::text)) OR ((cvterm.name)::text = 'modified_uridine'::text)) OR ((cvterm.name)::text = 'modified_inosine'::text)) OR ((cvterm.name)::text = 'methylinosine'::text)) OR ((cvterm.name)::text = 'one_methylinosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylinosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylinosine'::text)) OR ((cvterm.name)::text = 'one_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'N6_glycinylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_threonyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyl_N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_hydroxynorvalylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosyladenosine_phosphate'::text)) OR ((cvterm.name)::text = 'N6_N6_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_2_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_N6_2_prime_O_trimethyladenosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_acetyladenosine'::text)) OR ((cvterm.name)::text = 'three_methylcytidine'::text)) OR ((cvterm.name)::text = 'five_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_thiocytidine'::text)) OR ((cvterm.name)::text = 'N4_acetylcytidine'::text)) OR ((cvterm.name)::text = 'five_formylcytidine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'N4_acetyl_2_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'lysidine'::text)) OR ((cvterm.name)::text = 'N4_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_2_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'five_hydroxymethylcytidine'::text)) OR ((cvterm.name)::text = 'five_formyl_two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_N4_2_prime_O_trimethylcytidine'::text)) OR ((cvterm.name)::text = 'seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'one_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_methylguanosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_2_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_2_prime_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosylguanosine_phosphate'::text)) OR ((cvterm.name)::text = 'wybutosine'::text)) OR ((cvterm.name)::text = 'peroxywybutosine'::text)) OR ((cvterm.name)::text = 'hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'undermodified_hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'wyosine'::text)) OR ((cvterm.name)::text = 'methylwyosine'::text)) OR ((cvterm.name)::text = 'N2_7_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_7_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'four_demethylwyosine'::text)) OR ((cvterm.name)::text = 'isowyosine'::text)) OR ((cvterm.name)::text = 'N2_7_2prirme_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'queuosine'::text)) OR ((cvterm.name)::text = 'epoxyqueuosine'::text)) OR ((cvterm.name)::text = 'galactosyl_queuosine'::text)) OR ((cvterm.name)::text = 'mannosyl_queuosine'::text)) OR ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'archaeosine'::text)) OR ((cvterm.name)::text = 'dihydrouridine'::text)) OR ((cvterm.name)::text = 'pseudouridine'::text)) OR ((cvterm.name)::text = 'five_methyluridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'one_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_thiouridine'::text)) OR ((cvterm.name)::text = 'four_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methyl_2_thiouridine'::text)) OR ((cvterm.name)::text = 'two_thio_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'three_three_amino_three_carboxypropyl_uridine'::text)) OR ((cvterm.name)::text = 'five_hydroxyuridine'::text)) OR ((cvterm.name)::text = 'five_methoxyuridine'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_aminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_selenouridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'three_methyluridine'::text)) OR ((cvterm.name)::text = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethyluridine'::text)) OR ((cvterm.name)::text = 'three_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'five_methyldihydrouridine'::text)) OR ((cvterm.name)::text = 'three_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyluridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'base'::text));
- --
- -- Name: base_call_error_correction; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW base_call_error_correction AS
- SELECT feature.feature_id AS base_call_error_correction_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'base_call_error_correction'::text);
- --
- -- Name: base_pair; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW base_pair AS
- SELECT feature.feature_id AS base_pair_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'WC_base_pair'::text) OR ((cvterm.name)::text = 'sugar_edge_base_pair'::text)) OR ((cvterm.name)::text = 'Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'reverse_Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'wobble_base_pair'::text)) OR ((cvterm.name)::text = 'base_pair'::text));
- --
- -- Name: benign_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW benign_variant AS
- SELECT feature.feature_id AS benign_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'benign_variant'::text);
- --
- -- Name: beta_bulge; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_bulge AS
- SELECT feature.feature_id AS beta_bulge_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'beta_bulge'::text);
- --
- -- Name: beta_bulge_loop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_bulge_loop AS
- SELECT feature.feature_id AS beta_bulge_loop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'beta_bulge_loop_five'::text) OR ((cvterm.name)::text = 'beta_bulge_loop_six'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop'::text));
- --
- -- Name: beta_bulge_loop_five; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_bulge_loop_five AS
- SELECT feature.feature_id AS beta_bulge_loop_five_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'beta_bulge_loop_five'::text);
- --
- -- Name: beta_bulge_loop_six; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_bulge_loop_six AS
- SELECT feature.feature_id AS beta_bulge_loop_six_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'beta_bulge_loop_six'::text);
- --
- -- Name: beta_strand; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_strand AS
- SELECT feature.feature_id AS beta_strand_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'antiparallel_beta_strand'::text) OR ((cvterm.name)::text = 'parallel_beta_strand'::text)) OR ((cvterm.name)::text = 'beta_strand'::text));
- --
- -- Name: beta_turn; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_turn AS
- SELECT feature.feature_id AS beta_turn_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((cvterm.name)::text = 'beta_turn_left_handed_type_one'::text) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six'::text)) OR ((cvterm.name)::text = 'beta_turn_type_eight'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_b'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_one'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'beta_turn'::text));
- --
- -- Name: beta_turn_left_handed_type_one; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_turn_left_handed_type_one AS
- SELECT feature.feature_id AS beta_turn_left_handed_type_one_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'beta_turn_left_handed_type_one'::text);
- --
- -- Name: beta_turn_left_handed_type_two; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_turn_left_handed_type_two AS
- SELECT feature.feature_id AS beta_turn_left_handed_type_two_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'beta_turn_left_handed_type_two'::text);
- --
- -- Name: beta_turn_right_handed_type_one; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_turn_right_handed_type_one AS
- SELECT feature.feature_id AS beta_turn_right_handed_type_one_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'beta_turn_right_handed_type_one'::text);
- --
- -- Name: beta_turn_right_handed_type_two; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_turn_right_handed_type_two AS
- SELECT feature.feature_id AS beta_turn_right_handed_type_two_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'beta_turn_right_handed_type_two'::text);
- --
- -- Name: beta_turn_type_eight; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_turn_type_eight AS
- SELECT feature.feature_id AS beta_turn_type_eight_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'beta_turn_type_eight'::text);
- --
- -- Name: beta_turn_type_six; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_turn_type_six AS
- SELECT feature.feature_id AS beta_turn_type_six_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'beta_turn_type_six_a'::text) OR ((cvterm.name)::text = 'beta_turn_type_six_b'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_one'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six'::text));
- --
- -- Name: beta_turn_type_six_a; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_turn_type_six_a AS
- SELECT feature.feature_id AS beta_turn_type_six_a_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'beta_turn_type_six_a_one'::text) OR ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a'::text));
- --
- -- Name: beta_turn_type_six_a_one; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_turn_type_six_a_one AS
- SELECT feature.feature_id AS beta_turn_type_six_a_one_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'beta_turn_type_six_a_one'::text);
- --
- -- Name: beta_turn_type_six_a_two; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_turn_type_six_a_two AS
- SELECT feature.feature_id AS beta_turn_type_six_a_two_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text);
- --
- -- Name: beta_turn_type_six_b; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW beta_turn_type_six_b AS
- SELECT feature.feature_id AS beta_turn_type_six_b_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'beta_turn_type_six_b'::text);
- --
- -- Name: bidirectional_promoter; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bidirectional_promoter AS
- SELECT feature.feature_id AS bidirectional_promoter_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'bidirectional_promoter'::text);
- --
- -- Name: binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW binding_site AS
- SELECT feature.feature_id AS binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'protein_binding_site'::text) OR ((cvterm.name)::text = 'epitope'::text)) OR ((cvterm.name)::text = 'nucleotide_binding_site'::text)) OR ((cvterm.name)::text = 'metal_binding_site'::text)) OR ((cvterm.name)::text = 'ligand_binding_site'::text)) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'nucleotide_to_protein_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_binding_site'::text)) OR ((cvterm.name)::text = 'TF_binding_site'::text)) OR ((cvterm.name)::text = 'histone_binding_site'::text)) OR ((cvterm.name)::text = 'insulator_binding_site'::text)) OR ((cvterm.name)::text = 'enhancer_binding_site'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_sensitive_site'::text)) OR ((cvterm.name)::text = 'homing_endonuclease_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'group_1_intron_homing_endonuclease_target_region'::text)) OR ((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'miRNA_target_site'::text)) OR ((cvterm.name)::text = 'DNA_binding_site'::text)) OR ((cvterm.name)::text = 'primer_binding_site'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'binding_site'::text));
- --
- -- Name: biochemical_region_of_peptide; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW biochemical_region_of_peptide AS
- SELECT feature.feature_id AS biochemical_region_of_peptide_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'post_translationally_modified_region'::text) OR ((cvterm.name)::text = 'conformational_switch'::text)) OR ((cvterm.name)::text = 'molecular_contact_region'::text)) OR ((cvterm.name)::text = 'polypeptide_binding_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_catalytic_motif'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text)) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'biochemical_region_of_peptide'::text));
- --
- -- Name: biological_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW biological_region AS
- SELECT feature.feature_id AS biological_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'sequence_secondary_structure'::text) OR ((cvterm.name)::text = 'linkage_group'::text)) OR ((cvterm.name)::text = 'polypeptide'::text)) OR ((cvterm.name)::text = 'deletion'::text)) OR ((cvterm.name)::text = 'origin_of_replication'::text)) OR ((cvterm.name)::text = 'recombination_feature'::text)) OR ((cvterm.name)::text = 'CpG_island'::text)) OR ((cvterm.name)::text = 'pseudogene'::text)) OR ((cvterm.name)::text = 'binding_site'::text)) OR ((cvterm.name)::text = 'pseudogenic_region'::text)) OR ((cvterm.name)::text = 'cap'::text)) OR ((cvterm.name)::text = 'intergenic_region'::text)) OR ((cvterm.name)::text = 'oligo_U_tail'::text)) OR ((cvterm.name)::text = 'polyA_sequence'::text)) OR ((cvterm.name)::text = 'repeat_region'::text)) OR ((cvterm.name)::text = 'insertion'::text)) OR ((cvterm.name)::text = 'gene'::text)) OR ((cvterm.name)::text = 'repeat_unit'::text)) OR ((cvterm.name)::text = 'QTL'::text)) OR ((cvterm.name)::text = 'chromosome_part'::text)) OR ((cvterm.name)::text = 'gene_member_region'::text)) OR ((cvterm.name)::text = 'transcript_region'::text)) OR ((cvterm.name)::text = 'polypeptide_region'::text)) OR ((cvterm.name)::text = 'gene_component_region'::text)) OR ((cvterm.name)::text = 'mobile_genetic_element'::text)) OR ((cvterm.name)::text = 'replicon'::text)) OR ((cvterm.name)::text = 'base'::text)) OR ((cvterm.name)::text = 'amino_acid'::text)) OR ((cvterm.name)::text = 'genetic_marker'::text)) OR ((cvterm.name)::text = 'sequence_motif'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_recognition_site'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_single_strand_overhang'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_region'::text)) OR ((cvterm.name)::text = 'open_chromatin_region'::text)) OR ((cvterm.name)::text = 'gene_group'::text)) OR ((cvterm.name)::text = 'substitution'::text)) OR ((cvterm.name)::text = 'inversion'::text)) OR ((cvterm.name)::text = 'retron'::text)) OR ((cvterm.name)::text = 'G_quartet'::text)) OR ((cvterm.name)::text = 'base_pair'::text)) OR ((cvterm.name)::text = 'RNA_sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'DNA_sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'pseudoknot'::text)) OR ((cvterm.name)::text = 'WC_base_pair'::text)) OR ((cvterm.name)::text = 'sugar_edge_base_pair'::text)) OR ((cvterm.name)::text = 'Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'reverse_Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'wobble_base_pair'::text)) OR ((cvterm.name)::text = 'stem_loop'::text)) OR ((cvterm.name)::text = 'tetraloop'::text)) OR ((cvterm.name)::text = 'i_motif'::text)) OR ((cvterm.name)::text = 'recoding_pseudoknot'::text)) OR ((cvterm.name)::text = 'H_pseudoknot'::text)) OR ((cvterm.name)::text = 'D_loop'::text)) OR ((cvterm.name)::text = 'ARS'::text)) OR ((cvterm.name)::text = 'oriT'::text)) OR ((cvterm.name)::text = 'amplification_origin'::text)) OR ((cvterm.name)::text = 'oriV'::text)) OR ((cvterm.name)::text = 'oriC'::text)) OR ((cvterm.name)::text = 'recombination_hotspot'::text)) OR ((cvterm.name)::text = 'haplotype_block'::text)) OR ((cvterm.name)::text = 'sequence_rearrangement_feature'::text)) OR ((cvterm.name)::text = 'iDNA'::text)) OR ((cvterm.name)::text = 'specific_recombination_site'::text)) OR ((cvterm.name)::text = 'chromosome_breakage_sequence'::text)) OR ((cvterm.name)::text = 'internal_eliminated_sequence'::text)) OR ((cvterm.name)::text = 'macronucleus_destined_segment'::text)) OR ((cvterm.name)::text = 'recombination_feature_of_rearranged_gene'::text)) OR ((cvterm.name)::text = 'site_specific_recombination_target_region'::text)) OR ((cvterm.name)::text = 'recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text)) OR ((cvterm.name)::text = 'D_gene'::text)) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'three_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'VD_gene'::text)) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'integration_excision_site'::text)) OR ((cvterm.name)::text = 'resolution_site'::text)) OR ((cvterm.name)::text = 'inversion_site'::text)) OR ((cvterm.name)::text = 'inversion_site_part'::text)) OR ((cvterm.name)::text = 'attI_site'::text)) OR ((cvterm.name)::text = 'attP_site'::text)) OR ((cvterm.name)::text = 'attB_site'::text)) OR ((cvterm.name)::text = 'attL_site'::text)) OR ((cvterm.name)::text = 'attR_site'::text)) OR ((cvterm.name)::text = 'attC_site'::text)) OR ((cvterm.name)::text = 'attCtn_site'::text)) OR ((cvterm.name)::text = 'loxP_site'::text)) OR ((cvterm.name)::text = 'dif_site'::text)) OR ((cvterm.name)::text = 'FRT_site'::text)) OR ((cvterm.name)::text = 'IRLinv_site'::text)) OR ((cvterm.name)::text = 'IRRinv_site'::text)) OR ((cvterm.name)::text = 'processed_pseudogene'::text)) OR ((cvterm.name)::text = 'non_processed_pseudogene'::text)) OR ((cvterm.name)::text = 'pseudogene_by_unequal_crossing_over'::text)) OR ((cvterm.name)::text = 'nuclear_mt_pseudogene'::text)) OR ((cvterm.name)::text = 'cassette_pseudogene'::text)) OR ((cvterm.name)::text = 'duplicated_pseudogene'::text)) OR ((cvterm.name)::text = 'unitary_pseudogene'::text)) OR ((cvterm.name)::text = 'protein_binding_site'::text)) OR ((cvterm.name)::text = 'epitope'::text)) OR ((cvterm.name)::text = 'nucleotide_binding_site'::text)) OR ((cvterm.name)::text = 'metal_binding_site'::text)) OR ((cvterm.name)::text = 'ligand_binding_site'::text)) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'nucleotide_to_protein_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_binding_site'::text)) OR ((cvterm.name)::text = 'TF_binding_site'::text)) OR ((cvterm.name)::text = 'histone_binding_site'::text)) OR ((cvterm.name)::text = 'insulator_binding_site'::text)) OR ((cvterm.name)::text = 'enhancer_binding_site'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_sensitive_site'::text)) OR ((cvterm.name)::text = 'homing_endonuclease_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'group_1_intron_homing_endonuclease_target_region'::text)) OR ((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'miRNA_target_site'::text)) OR ((cvterm.name)::text = 'DNA_binding_site'::text)) OR ((cvterm.name)::text = 'primer_binding_site'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'decayed_exon'::text)) OR ((cvterm.name)::text = 'pseudogenic_exon'::text)) OR ((cvterm.name)::text = 'pseudogenic_transcript'::text)) OR ((cvterm.name)::text = 'pseudogenic_rRNA'::text)) OR ((cvterm.name)::text = 'pseudogenic_tRNA'::text)) OR ((cvterm.name)::text = 'long_terminal_repeat'::text)) OR ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text)) OR ((cvterm.name)::text = 'inverted_repeat'::text)) OR ((cvterm.name)::text = 'direct_repeat'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon_polymeric_tract'::text)) OR ((cvterm.name)::text = 'dispersed_repeat'::text)) OR ((cvterm.name)::text = 'tandem_repeat'::text)) OR ((cvterm.name)::text = 'X_element_combinatorial_repeat'::text)) OR ((cvterm.name)::text = 'Y_prime_element'::text)) OR ((cvterm.name)::text = 'telomeric_repeat'::text)) OR ((cvterm.name)::text = 'nested_repeat'::text)) OR ((cvterm.name)::text = 'centromeric_repeat'::text)) OR ((cvterm.name)::text = 'five_prime_LTR'::text)) OR ((cvterm.name)::text = 'three_prime_LTR'::text)) OR ((cvterm.name)::text = 'solo_LTR'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'five_prime_terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'three_prime_terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'target_site_duplication'::text)) OR ((cvterm.name)::text = 'CRISPR'::text)) OR ((cvterm.name)::text = 'satellite_DNA'::text)) OR ((cvterm.name)::text = 'microsatellite'::text)) OR ((cvterm.name)::text = 'minisatellite'::text)) OR ((cvterm.name)::text = 'dinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'trinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'tetranucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'nested_tandem_repeat'::text)) OR ((cvterm.name)::text = 'regional_centromere_inner_repeat_region'::text)) OR ((cvterm.name)::text = 'regional_centromere_outer_repeat_region'::text)) OR ((cvterm.name)::text = 'transgenic_insertion'::text)) OR ((cvterm.name)::text = 'duplication'::text)) OR ((cvterm.name)::text = 'tandem_duplication'::text)) OR ((cvterm.name)::text = 'direct_tandem_duplication'::text)) OR ((cvterm.name)::text = 'inverted_tandem_duplication'::text)) OR ((cvterm.name)::text = 'nuclear_gene'::text)) OR ((cvterm.name)::text = 'mt_gene'::text)) OR ((cvterm.name)::text = 'plastid_gene'::text)) OR ((cvterm.name)::text = 'nucleomorph_gene'::text)) OR ((cvterm.name)::text = 'plasmid_gene'::text)) OR ((cvterm.name)::text = 'proviral_gene'::text)) OR ((cvterm.name)::text = 'transposable_element_gene'::text)) OR ((cvterm.name)::text = 'silenced_gene'::text)) OR ((cvterm.name)::text = 'engineered_gene'::text)) OR ((cvterm.name)::text = 'foreign_gene'::text)) OR ((cvterm.name)::text = 'fusion_gene'::text)) OR ((cvterm.name)::text = 'recombinationally_rearranged_gene'::text)) OR ((cvterm.name)::text = 'gene_with_trans_spliced_transcript'::text)) OR ((cvterm.name)::text = 'gene_with_polycistronic_transcript'::text)) OR ((cvterm.name)::text = 'rescue_gene'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_gene'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated_gene'::text)) OR ((cvterm.name)::text = 'positively_autoregulated_gene'::text)) OR ((cvterm.name)::text = 'translationally_regulated_gene'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_gene'::text)) OR ((cvterm.name)::text = 'transgene'::text)) OR ((cvterm.name)::text = 'predicted_gene'::text)) OR 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((cvterm.name)::text = 'proviral_region'::text)) OR ((cvterm.name)::text = 'integron'::text)) OR ((cvterm.name)::text = 'genomic_island'::text)) OR ((cvterm.name)::text = 'integrated_plasmid'::text)) OR ((cvterm.name)::text = 'cointegrated_plasmid'::text)) OR ((cvterm.name)::text = 'retrotransposon'::text)) OR ((cvterm.name)::text = 'DNA_transposon'::text)) OR ((cvterm.name)::text = 'foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'transgenic_transposable_element'::text)) OR ((cvterm.name)::text = 'natural_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'nested_transposon'::text)) OR ((cvterm.name)::text = 'LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'LINE_element'::text)) OR ((cvterm.name)::text = 'SINE_element'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat_element'::text)) OR ((cvterm.name)::text = 'foldback_element'::text)) OR ((cvterm.name)::text = 'conjugative_transposon'::text)) OR ((cvterm.name)::text = 'helitron'::text)) OR ((cvterm.name)::text = 'p_element'::text)) OR ((cvterm.name)::text = 'MITE'::text)) OR ((cvterm.name)::text = 'insertion_sequence'::text)) OR ((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'prophage'::text)) OR ((cvterm.name)::text = 'pathogenic_island'::text)) OR ((cvterm.name)::text = 'metabolic_island'::text)) OR ((cvterm.name)::text = 'adaptive_island'::text)) OR ((cvterm.name)::text = 'symbiosis_island'::text)) OR ((cvterm.name)::text = 'cryptic_prophage'::text)) OR ((cvterm.name)::text = 'defective_conjugative_transposon'::text)) OR ((cvterm.name)::text = 'plasmid'::text)) OR ((cvterm.name)::text = 'chromosome'::text)) OR ((cvterm.name)::text = 'vector_replicon'::text)) OR 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((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'YAC'::text)) OR ((cvterm.name)::text = 'BAC'::text)) OR ((cvterm.name)::text = 'PAC'::text)) OR ((cvterm.name)::text = 'cosmid'::text)) OR ((cvterm.name)::text = 'phagemid'::text)) OR ((cvterm.name)::text = 'fosmid'::text)) OR ((cvterm.name)::text = 'lambda_vector'::text)) OR ((cvterm.name)::text = 'plasmid_vector'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'phage_sequence'::text)) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR 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'two_methylthio_N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'N6_glycinylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_threonyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyl_N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_hydroxynorvalylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosyladenosine_phosphate'::text)) OR ((cvterm.name)::text = 'N6_N6_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_2_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_N6_2_prime_O_trimethyladenosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_acetyladenosine'::text)) OR ((cvterm.name)::text = 'three_methylcytidine'::text)) OR ((cvterm.name)::text = 'five_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_thiocytidine'::text)) OR ((cvterm.name)::text = 'N4_acetylcytidine'::text)) OR ((cvterm.name)::text = 'five_formylcytidine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'N4_acetyl_2_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'lysidine'::text)) OR ((cvterm.name)::text = 'N4_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_2_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'five_hydroxymethylcytidine'::text)) OR ((cvterm.name)::text = 'five_formyl_two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text 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((cvterm.name)::text = 'N2_N2_7_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'four_demethylwyosine'::text)) OR ((cvterm.name)::text = 'isowyosine'::text)) OR ((cvterm.name)::text = 'N2_7_2prirme_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'queuosine'::text)) OR ((cvterm.name)::text = 'epoxyqueuosine'::text)) OR ((cvterm.name)::text = 'galactosyl_queuosine'::text)) OR ((cvterm.name)::text = 'mannosyl_queuosine'::text)) OR ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'archaeosine'::text)) OR ((cvterm.name)::text = 'dihydrouridine'::text)) OR ((cvterm.name)::text = 'pseudouridine'::text)) OR ((cvterm.name)::text = 'five_methyluridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethyluridine'::text)) OR 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'heritable_phenotypic_marker'::text)) OR ((cvterm.name)::text = 'DArT_marker'::text)) OR ((cvterm.name)::text = 'nucleotide_motif'::text)) OR ((cvterm.name)::text = 'DNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_motif'::text)) OR ((cvterm.name)::text = 'PSE_motif'::text)) OR ((cvterm.name)::text = 'CAAT_signal'::text)) OR ((cvterm.name)::text = 'minus_10_signal'::text)) OR ((cvterm.name)::text = 'minus_35_signal'::text)) OR ((cvterm.name)::text = 'DRE_motif'::text)) OR ((cvterm.name)::text = 'E_box_motif'::text)) OR ((cvterm.name)::text = 'INR1_motif'::text)) OR ((cvterm.name)::text = 'GAGA_motif'::text)) OR ((cvterm.name)::text = 'octamer_motif'::text)) OR ((cvterm.name)::text = 'retinoic_acid_responsive_element'::text)) OR ((cvterm.name)::text = 'promoter_element'::text)) OR ((cvterm.name)::text = 'DCE_SI'::text)) OR ((cvterm.name)::text = 'DCE_SII'::text)) OR ((cvterm.name)::text = 'DCE_SIII'::text)) OR ((cvterm.name)::text = 'minus_12_signal'::text)) OR ((cvterm.name)::text = 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((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'proximal_promoter_element'::text)) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'A_minor_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_junction_loop'::text)) OR ((cvterm.name)::text = 'hammerhead_ribozyme'::text)) OR ((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'K_turn_RNA_motif'::text)) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_hook_turn'::text)) OR ((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'sticky_end_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'modified_base'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_gene'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'methylated_base_feature'::text)) OR ((cvterm.name)::text = 'methylated_C'::text)) OR ((cvterm.name)::text = 'methylated_A'::text)) OR ((cvterm.name)::text = 'gene_rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'paternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'allelically_excluded_gene'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'operon'::text)) OR ((cvterm.name)::text = 'mating_type_region'::text)) OR ((cvterm.name)::text = 'gene_array'::text)) OR ((cvterm.name)::text = 'gene_subarray'::text)) OR ((cvterm.name)::text = 'gene_cassette_array'::text)) OR ((cvterm.name)::text = 'regulon'::text)) OR ((cvterm.name)::text = 'sequence_length_variation'::text)) OR ((cvterm.name)::text = 'MNP'::text)) OR ((cvterm.name)::text = 'SNV'::text)) OR ((cvterm.name)::text = 'complex_substitution'::text)) OR ((cvterm.name)::text = 'simple_sequence_length_variation'::text)) OR ((cvterm.name)::text = 'SNP'::text)) OR ((cvterm.name)::text = 'point_mutation'::text)) OR ((cvterm.name)::text = 'transition'::text)) OR ((cvterm.name)::text = 'transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'biological_region'::text));
- --
- -- Name: biomaterial_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW biomaterial_region AS
- SELECT feature.feature_id AS biomaterial_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'reagent'::text) OR ((cvterm.name)::text = 'engineered_region'::text)) OR ((cvterm.name)::text = 'PCR_product'::text)) OR ((cvterm.name)::text = 'clone'::text)) OR ((cvterm.name)::text = 'rescue_region'::text)) OR ((cvterm.name)::text = 'oligo'::text)) OR ((cvterm.name)::text = 'clone_insert'::text)) OR ((cvterm.name)::text = 'cloned_region'::text)) OR ((cvterm.name)::text = 'databank_entry'::text)) OR ((cvterm.name)::text = 'RAPD'::text)) OR ((cvterm.name)::text = 'genomic_clone'::text)) OR ((cvterm.name)::text = 'cDNA_clone'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'validated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'invalidated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'three_prime_RACE_clone'::text)) OR ((cvterm.name)::text = 'chimeric_cDNA_clone'::text)) OR ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'aptamer'::text)) OR ((cvterm.name)::text = 'probe'::text)) OR ((cvterm.name)::text = 'tag'::text)) OR ((cvterm.name)::text = 'ss_oligo'::text)) OR ((cvterm.name)::text = 'ds_oligo'::text)) OR ((cvterm.name)::text = 'DNAzyme'::text)) OR ((cvterm.name)::text = 'synthetic_oligo'::text)) OR ((cvterm.name)::text = 'DNA_aptamer'::text)) OR ((cvterm.name)::text = 'RNA_aptamer'::text)) OR ((cvterm.name)::text = 'microarray_oligo'::text)) OR ((cvterm.name)::text = 'SAGE_tag'::text)) OR ((cvterm.name)::text = 'STS'::text)) OR ((cvterm.name)::text = 'EST'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'five_prime_EST'::text)) OR ((cvterm.name)::text = 'three_prime_EST'::text)) OR ((cvterm.name)::text = 'UST'::text)) OR ((cvterm.name)::text = 'RST'::text)) OR ((cvterm.name)::text = 'three_prime_UST'::text)) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'three_prime_RST'::text)) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'primer'::text)) OR ((cvterm.name)::text = 'sequencing_primer'::text)) OR ((cvterm.name)::text = 'forward_primer'::text)) OR ((cvterm.name)::text = 'reverse_primer'::text)) OR ((cvterm.name)::text = 'ASPE_primer'::text)) OR ((cvterm.name)::text = 'dCAPS_primer'::text)) OR ((cvterm.name)::text = 'RNAi_reagent'::text)) OR ((cvterm.name)::text = 'DNA_constraint_sequence'::text)) OR ((cvterm.name)::text = 'morpholino_oligo'::text)) OR ((cvterm.name)::text = 'PNA_oligo'::text)) OR ((cvterm.name)::text = 'LNA_oligo'::text)) OR ((cvterm.name)::text = 'TNA_oligo'::text)) OR ((cvterm.name)::text = 'GNA_oligo'::text)) OR ((cvterm.name)::text = 'R_GNA_oligo'::text)) OR ((cvterm.name)::text = 'S_GNA_oligo'::text)) OR ((cvterm.name)::text = 'cloned_cDNA_insert'::text)) OR ((cvterm.name)::text = 'cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'BAC_cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_gene'::text)) OR ((cvterm.name)::text = 'engineered_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_region'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_fusion_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'biomaterial_region'::text));
- --
- -- Name: bipartite_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bipartite_duplication AS
- SELECT feature.feature_id AS bipartite_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'bipartite_duplication'::text);
- --
- -- Name: bipartite_inversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bipartite_inversion AS
- SELECT feature.feature_id AS bipartite_inversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'bipartite_inversion'::text);
- --
- -- Name: blocked_reading_frame; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW blocked_reading_frame AS
- SELECT feature.feature_id AS blocked_reading_frame_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'blocked_reading_frame'::text);
- --
- -- Name: blunt_end_restriction_enzyme_cleavage_junction; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW blunt_end_restriction_enzyme_cleavage_junction AS
- SELECT feature.feature_id AS blunt_end_restriction_enzyme_cleavage_junction_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_junction'::text);
- --
- -- Name: blunt_end_restriction_enzyme_cleavage_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW blunt_end_restriction_enzyme_cleavage_site AS
- SELECT feature.feature_id AS blunt_end_restriction_enzyme_cleavage_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_site'::text);
- --
- -- Name: bound_by_factor; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bound_by_factor AS
- SELECT feature.feature_id AS bound_by_factor_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'bound_by_protein'::text) OR ((cvterm.name)::text = 'bound_by_nucleic_acid'::text)) OR ((cvterm.name)::text = 'bound_by_factor'::text));
- --
- -- Name: bound_by_nucleic_acid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bound_by_nucleic_acid AS
- SELECT feature.feature_id AS bound_by_nucleic_acid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'bound_by_nucleic_acid'::text);
- --
- -- Name: bound_by_protein; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bound_by_protein AS
- SELECT feature.feature_id AS bound_by_protein_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'bound_by_protein'::text);
- --
- -- Name: branch_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW branch_site AS
- SELECT feature.feature_id AS branch_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'branch_site'::text);
- --
- -- Name: bred_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bred_motif AS
- SELECT feature.feature_id AS bred_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'BREd_motif'::text);
- --
- -- Name: breu_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW breu_motif AS
- SELECT feature.feature_id AS breu_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'BREu_motif'::text);
- --
- -- Name: bruno_response_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW bruno_response_element AS
- SELECT feature.feature_id AS bruno_response_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'Bruno_response_element'::text);
- --
- -- Name: c_box; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW c_box AS
- SELECT feature.feature_id AS c_box_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'C_box'::text);
- --
- -- Name: c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW c_cluster AS
- SELECT feature.feature_id AS c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'C_cluster'::text);
- --
- -- Name: c_d_box_snorna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW c_d_box_snorna AS
- SELECT feature.feature_id AS c_d_box_snorna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'U14_snoRNA'::text) OR ((cvterm.name)::text = 'U3_snoRNA'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA'::text));
- --
- -- Name: c_d_box_snorna_encoding; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW c_d_box_snorna_encoding AS
- SELECT feature.feature_id AS c_d_box_snorna_encoding_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'C_D_box_snoRNA_encoding'::text);
- --
- -- Name: c_d_box_snorna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW c_d_box_snorna_primary_transcript AS
- SELECT feature.feature_id AS c_d_box_snorna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'C_D_box_snoRNA_primary_transcript'::text);
- --
- -- Name: c_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW c_gene AS
- SELECT feature.feature_id AS c_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'C_gene'::text);
- --
- -- Name: c_terminal_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW c_terminal_region AS
- SELECT feature.feature_id AS c_terminal_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'c_terminal_region'::text);
- --
- -- Name: c_to_a_transversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW c_to_a_transversion AS
- SELECT feature.feature_id AS c_to_a_transversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'C_to_A_transversion'::text);
- --
- -- Name: c_to_g_transversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW c_to_g_transversion AS
- SELECT feature.feature_id AS c_to_g_transversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'C_to_G_transversion'::text);
- --
- -- Name: c_to_t_transition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW c_to_t_transition AS
- SELECT feature.feature_id AS c_to_t_transition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text) OR ((cvterm.name)::text = 'C_to_T_transition'::text));
- --
- -- Name: c_to_t_transition_at_pcpg_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW c_to_t_transition_at_pcpg_site AS
- SELECT feature.feature_id AS c_to_t_transition_at_pcpg_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text);
- --
- -- Name: caat_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW caat_signal AS
- SELECT feature.feature_id AS caat_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'CAAT_signal'::text);
- --
- -- Name: canonical_five_prime_splice_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW canonical_five_prime_splice_site AS
- SELECT feature.feature_id AS canonical_five_prime_splice_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'canonical_five_prime_splice_site'::text);
- --
- -- Name: canonical_three_prime_splice_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW canonical_three_prime_splice_site AS
- SELECT feature.feature_id AS canonical_three_prime_splice_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'canonical_three_prime_splice_site'::text);
- --
- -- Name: cap; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cap AS
- SELECT feature.feature_id AS cap_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cap'::text);
- --
- -- Name: capped; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW capped AS
- SELECT feature.feature_id AS capped_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'capped'::text);
- --
- -- Name: capped_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW capped_mrna AS
- SELECT feature.feature_id AS capped_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'capped_mRNA'::text);
- --
- -- Name: capped_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW capped_primary_transcript AS
- SELECT feature.feature_id AS capped_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'capped_primary_transcript'::text);
- --
- -- Name: cassette_array_member; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cassette_array_member AS
- SELECT feature.feature_id AS cassette_array_member_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cassette_array_member'::text);
- --
- -- Name: cassette_pseudogene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cassette_pseudogene AS
- SELECT feature.feature_id AS cassette_pseudogene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cassette_pseudogene'::text);
- --
- -- Name: catalytic_residue; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW catalytic_residue AS
- SELECT feature.feature_id AS catalytic_residue_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'catalytic_residue'::text);
- --
- -- Name: catmat_left_handed_four; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW catmat_left_handed_four AS
- SELECT feature.feature_id AS catmat_left_handed_four_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'catmat_left_handed_four'::text);
- --
- -- Name: catmat_left_handed_three; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW catmat_left_handed_three AS
- SELECT feature.feature_id AS catmat_left_handed_three_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'catmat_left_handed_three'::text);
- --
- -- Name: catmat_right_handed_four; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW catmat_right_handed_four AS
- SELECT feature.feature_id AS catmat_right_handed_four_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'catmat_right_handed_four'::text);
- --
- -- Name: catmat_right_handed_three; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW catmat_right_handed_three AS
- SELECT feature.feature_id AS catmat_right_handed_three_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'catmat_right_handed_three'::text);
- --
- -- Name: cca_tail; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cca_tail AS
- SELECT feature.feature_id AS cca_tail_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'CCA_tail'::text);
- --
- -- Name: cdna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cdna AS
- SELECT feature.feature_id AS cdna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'single_stranded_cDNA'::text) OR ((cvterm.name)::text = 'double_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'cDNA'::text));
- --
- -- Name: cdna_clone; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cdna_clone AS
- SELECT feature.feature_id AS cdna_clone_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'validated_cDNA_clone'::text) OR ((cvterm.name)::text = 'invalidated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'three_prime_RACE_clone'::text)) OR ((cvterm.name)::text = 'chimeric_cDNA_clone'::text)) OR ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'cDNA_clone'::text));
- --
- -- Name: cdna_match; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cdna_match AS
- SELECT feature.feature_id AS cdna_match_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cDNA_match'::text);
- --
- -- Name: cds; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cds AS
- SELECT feature.feature_id AS cds_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((cvterm.name)::text = 'edited_CDS'::text) OR ((cvterm.name)::text = 'CDS_fragment'::text)) OR ((cvterm.name)::text = 'CDS_independently_known'::text)) OR ((cvterm.name)::text = 'CDS_predicted'::text)) OR ((cvterm.name)::text = 'orphan_CDS'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_sequence_similarity_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_domain_match_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_EST_or_cDNA_data'::text)) OR ((cvterm.name)::text = 'CDS'::text));
- --
- -- Name: cds_fragment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cds_fragment AS
- SELECT feature.feature_id AS cds_fragment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'CDS_fragment'::text);
- --
- -- Name: cds_independently_known; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cds_independently_known AS
- SELECT feature.feature_id AS cds_independently_known_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'CDS_independently_known'::text);
- --
- -- Name: cds_predicted; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cds_predicted AS
- SELECT feature.feature_id AS cds_predicted_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'orphan_CDS'::text) OR ((cvterm.name)::text = 'CDS_supported_by_sequence_similarity_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_domain_match_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_EST_or_cDNA_data'::text)) OR ((cvterm.name)::text = 'CDS_predicted'::text));
- --
- -- Name: cds_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cds_region AS
- SELECT feature.feature_id AS cds_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((cvterm.name)::text = 'coding_start'::text) OR ((cvterm.name)::text = 'coding_end'::text)) OR ((cvterm.name)::text = 'codon'::text)) OR ((cvterm.name)::text = 'recoded_codon'::text)) OR ((cvterm.name)::text = 'start_codon'::text)) OR ((cvterm.name)::text = 'stop_codon'::text)) OR ((cvterm.name)::text = 'stop_codon_read_through'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'non_canonical_start_codon'::text)) OR ((cvterm.name)::text = 'four_bp_start_codon'::text)) OR ((cvterm.name)::text = 'CTG_start_codon'::text)) OR ((cvterm.name)::text = 'CDS_region'::text));
- --
- -- Name: cds_supported_by_domain_match_data; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cds_supported_by_domain_match_data AS
- SELECT feature.feature_id AS cds_supported_by_domain_match_data_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'CDS_supported_by_domain_match_data'::text);
- --
- -- Name: cds_supported_by_est_or_cdna_data; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cds_supported_by_est_or_cdna_data AS
- SELECT feature.feature_id AS cds_supported_by_est_or_cdna_data_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'CDS_supported_by_EST_or_cDNA_data'::text);
- --
- -- Name: cds_supported_by_sequence_similarity_data; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cds_supported_by_sequence_similarity_data AS
- SELECT feature.feature_id AS cds_supported_by_sequence_similarity_data_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'CDS_supported_by_domain_match_data'::text) OR ((cvterm.name)::text = 'CDS_supported_by_EST_or_cDNA_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_sequence_similarity_data'::text));
- --
- -- Name: central_hydrophobic_region_of_signal_peptide; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW central_hydrophobic_region_of_signal_peptide AS
- SELECT feature.feature_id AS central_hydrophobic_region_of_signal_peptide_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'central_hydrophobic_region_of_signal_peptide'::text);
- --
- -- Name: centromere; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW centromere AS
- SELECT feature.feature_id AS centromere_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'point_centromere'::text) OR ((cvterm.name)::text = 'regional_centromere'::text)) OR ((cvterm.name)::text = 'centromere'::text));
- --
- -- Name: centromere_dna_element_i; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW centromere_dna_element_i AS
- SELECT feature.feature_id AS centromere_dna_element_i_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'centromere_DNA_Element_I'::text);
- --
- -- Name: centromere_dna_element_ii; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW centromere_dna_element_ii AS
- SELECT feature.feature_id AS centromere_dna_element_ii_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'centromere_DNA_Element_II'::text);
- --
- -- Name: centromere_dna_element_iii; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW centromere_dna_element_iii AS
- SELECT feature.feature_id AS centromere_dna_element_iii_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'centromere_DNA_Element_III'::text);
- --
- -- Name: centromeric_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW centromeric_repeat AS
- SELECT feature.feature_id AS centromeric_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'regional_centromere_inner_repeat_region'::text) OR ((cvterm.name)::text = 'regional_centromere_outer_repeat_region'::text)) OR ((cvterm.name)::text = 'centromeric_repeat'::text));
- --
- -- Name: chimeric_cdna_clone; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chimeric_cdna_clone AS
- SELECT feature.feature_id AS chimeric_cdna_clone_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'chimeric_cDNA_clone'::text);
- --
- -- Name: chip_seq_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chip_seq_region AS
- SELECT feature.feature_id AS chip_seq_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'CHiP_seq_region'::text);
- --
- -- Name: chloroplast_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chloroplast_chromosome AS
- SELECT feature.feature_id AS chloroplast_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'chloroplast_chromosome'::text);
- --
- -- Name: chloroplast_dna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chloroplast_dna AS
- SELECT feature.feature_id AS chloroplast_dna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'chloroplast_DNA'::text);
- --
- -- Name: chloroplast_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chloroplast_sequence AS
- SELECT feature.feature_id AS chloroplast_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'chloroplast_DNA'::text) OR ((cvterm.name)::text = 'chloroplast_sequence'::text));
- --
- -- Name: chromoplast_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromoplast_chromosome AS
- SELECT feature.feature_id AS chromoplast_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'chromoplast_chromosome'::text);
- --
- -- Name: chromoplast_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromoplast_gene AS
- SELECT feature.feature_id AS chromoplast_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'chromoplast_gene'::text);
- --
- -- Name: chromoplast_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromoplast_sequence AS
- SELECT feature.feature_id AS chromoplast_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'chromoplast_sequence'::text);
- --
- -- Name: chromosomal_deletion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosomal_deletion AS
- SELECT feature.feature_id AS chromosomal_deletion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text) OR ((cvterm.name)::text = 'inversion_derived_bipartite_deficiency'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'chromosomal_deletion'::text));
- --
- -- Name: chromosomal_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosomal_duplication AS
- SELECT feature.feature_id AS chromosomal_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((cvterm.name)::text = 'interchromosomal_duplication'::text) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'free_duplication'::text)) OR ((cvterm.name)::text = 'insertional_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'uninverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'inverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'unoriented_insertional_duplication'::text)) OR ((cvterm.name)::text = 'chromosomal_duplication'::text));
- --
- -- Name: chromosomal_inversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosomal_inversion AS
- SELECT feature.feature_id AS chromosomal_inversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((cvterm.name)::text = 'inverted_ring_chromosome'::text) OR ((cvterm.name)::text = 'pericentric_inversion'::text)) OR ((cvterm.name)::text = 'paracentric_inversion'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'chromosomal_inversion'::text));
- --
- -- Name: chromosomal_regulatory_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosomal_regulatory_element AS
- SELECT feature.feature_id AS chromosomal_regulatory_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'matrix_attachment_site'::text) OR ((cvterm.name)::text = 'chromosomal_regulatory_element'::text));
- --
- -- Name: chromosomal_structural_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosomal_structural_element AS
- SELECT feature.feature_id AS chromosomal_structural_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'centromere'::text) OR ((cvterm.name)::text = 'telomere'::text)) OR ((cvterm.name)::text = 'point_centromere'::text)) OR ((cvterm.name)::text = 'regional_centromere'::text)) OR ((cvterm.name)::text = 'chromosomal_structural_element'::text));
- --
- -- Name: chromosomal_translocation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosomal_translocation AS
- SELECT feature.feature_id AS chromosomal_translocation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'translocation_element'::text) OR ((cvterm.name)::text = 'Robertsonian_fusion'::text)) OR ((cvterm.name)::text = 'reciprocal_chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'cyclic_translocation'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'chromosomal_translocation'::text));
- --
- -- Name: chromosomal_transposition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosomal_transposition AS
- SELECT feature.feature_id AS chromosomal_transposition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((cvterm.name)::text = 'intrachromosomal_transposition'::text) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'chromosomal_transposition'::text));
- --
- -- Name: chromosomal_variation_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosomal_variation_attribute AS
- SELECT feature.feature_id AS chromosomal_variation_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'intrachromosomal'::text) OR ((cvterm.name)::text = 'interchromosomal'::text)) OR ((cvterm.name)::text = 'chromosomal_variation_attribute'::text));
- --
- -- Name: chromosomally_aberrant_genome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosomally_aberrant_genome AS
- SELECT feature.feature_id AS chromosomally_aberrant_genome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'chromosomally_aberrant_genome'::text);
- --
- -- Name: chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosome AS
- SELECT feature.feature_id AS chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((cvterm.name)::text = 'mitochondrial_chromosome'::text) OR ((cvterm.name)::text = 'chloroplast_chromosome'::text)) OR ((cvterm.name)::text = 'chromoplast_chromosome'::text)) OR ((cvterm.name)::text = 'cyanelle_chromosome'::text)) OR ((cvterm.name)::text = 'leucoplast_chromosome'::text)) OR ((cvterm.name)::text = 'macronuclear_chromosome'::text)) OR ((cvterm.name)::text = 'micronuclear_chromosome'::text)) OR ((cvterm.name)::text = 'nuclear_chromosome'::text)) OR ((cvterm.name)::text = 'nucleomorphic_chromosome'::text)) OR ((cvterm.name)::text = 'DNA_chromosome'::text)) OR ((cvterm.name)::text = 'RNA_chromosome'::text)) OR ((cvterm.name)::text = 'apicoplast_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'chromosome'::text));
- --
- -- Name: chromosome_arm; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosome_arm AS
- SELECT feature.feature_id AS chromosome_arm_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'chromosome_arm'::text);
- --
- -- Name: chromosome_band; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosome_band AS
- SELECT feature.feature_id AS chromosome_band_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'chromosome_band'::text);
- --
- -- Name: chromosome_breakage_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosome_breakage_sequence AS
- SELECT feature.feature_id AS chromosome_breakage_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'chromosome_breakage_sequence'::text);
- --
- -- Name: chromosome_breakpoint; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosome_breakpoint AS
- SELECT feature.feature_id AS chromosome_breakpoint_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'inversion_breakpoint'::text) OR ((cvterm.name)::text = 'translocation_breakpoint'::text)) OR ((cvterm.name)::text = 'insertion_breakpoint'::text)) OR ((cvterm.name)::text = 'deletion_breakpoint'::text)) OR ((cvterm.name)::text = 'chromosome_breakpoint'::text));
- --
- -- Name: chromosome_fission; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosome_fission AS
- SELECT feature.feature_id AS chromosome_fission_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'chromosome_fission'::text);
- --
- -- Name: chromosome_number_variation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosome_number_variation AS
- SELECT feature.feature_id AS chromosome_number_variation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'aneuploid'::text) OR ((cvterm.name)::text = 'polyploid'::text)) OR ((cvterm.name)::text = 'hyperploid'::text)) OR ((cvterm.name)::text = 'hypoploid'::text)) OR ((cvterm.name)::text = 'autopolyploid'::text)) OR ((cvterm.name)::text = 'allopolyploid'::text)) OR ((cvterm.name)::text = 'chromosome_number_variation'::text));
- --
- -- Name: chromosome_part; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosome_part AS
- SELECT feature.feature_id AS chromosome_part_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((cvterm.name)::text = 'chromosome_arm'::text) OR ((cvterm.name)::text = 'chromosome_band'::text)) OR ((cvterm.name)::text = 'interband'::text)) OR ((cvterm.name)::text = 'chromosomal_regulatory_element'::text)) OR ((cvterm.name)::text = 'chromosomal_structural_element'::text)) OR ((cvterm.name)::text = 'introgressed_chromosome_region'::text)) OR ((cvterm.name)::text = 'matrix_attachment_site'::text)) OR ((cvterm.name)::text = 'centromere'::text)) OR ((cvterm.name)::text = 'telomere'::text)) OR ((cvterm.name)::text = 'point_centromere'::text)) OR ((cvterm.name)::text = 'regional_centromere'::text)) OR ((cvterm.name)::text = 'chromosome_part'::text));
- --
- -- Name: chromosome_structure_variation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosome_structure_variation AS
- SELECT feature.feature_id AS chromosome_structure_variation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'free_chromosome_arm'::text) OR ((cvterm.name)::text = 'chromosomal_transposition'::text)) OR ((cvterm.name)::text = 'aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'intrachromosomal_mutation'::text)) OR ((cvterm.name)::text = 'interchromosomal_mutation'::text)) OR ((cvterm.name)::text = 'chromosomal_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome'::text)) OR ((cvterm.name)::text = 'autosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'complex_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'uncharacterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'chromosomal_deletion'::text)) OR ((cvterm.name)::text = 'chromosomal_inversion'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'ring_chromosome'::text)) OR ((cvterm.name)::text = 'chromosome_fission'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_deficiency'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'pericentric_inversion'::text)) OR ((cvterm.name)::text = 'paracentric_inversion'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'translocation_element'::text)) OR ((cvterm.name)::text = 'Robertsonian_fusion'::text)) OR ((cvterm.name)::text = 'reciprocal_chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'cyclic_translocation'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_duplication'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'free_duplication'::text)) OR ((cvterm.name)::text = 'insertional_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'uninverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'inverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'unoriented_insertional_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome_arm'::text)) OR ((cvterm.name)::text = 'homo_compound_chromosome'::text)) OR ((cvterm.name)::text = 'hetero_compound_chromosome'::text)) OR ((cvterm.name)::text = 'dexstrosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'laevosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'partially_characterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'chromosome_structure_variation'::text));
- --
- -- Name: chromosome_variation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW chromosome_variation AS
- SELECT feature.feature_id AS chromosome_variation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'assortment_derived_variation'::text) OR ((cvterm.name)::text = 'chromosome_number_variation'::text)) OR ((cvterm.name)::text = 'chromosome_structure_variation'::text)) OR ((cvterm.name)::text = 'assortment_derived_duplication'::text)) OR ((cvterm.name)::text = 'assortment_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'assortment_derived_deficiency'::text)) OR ((cvterm.name)::text = 'assortment_derived_aneuploid'::text)) OR ((cvterm.name)::text = 'aneuploid'::text)) OR ((cvterm.name)::text = 'polyploid'::text)) OR ((cvterm.name)::text = 'hyperploid'::text)) OR ((cvterm.name)::text = 'hypoploid'::text)) OR ((cvterm.name)::text = 'autopolyploid'::text)) OR ((cvterm.name)::text = 'allopolyploid'::text)) OR ((cvterm.name)::text = 'free_chromosome_arm'::text)) OR ((cvterm.name)::text = 'chromosomal_transposition'::text)) OR ((cvterm.name)::text = 'aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'intrachromosomal_mutation'::text)) OR ((cvterm.name)::text = 'interchromosomal_mutation'::text)) OR ((cvterm.name)::text = 'chromosomal_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome'::text)) OR ((cvterm.name)::text = 'autosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'complex_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'uncharacterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'chromosomal_deletion'::text)) OR ((cvterm.name)::text = 'chromosomal_inversion'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'ring_chromosome'::text)) OR ((cvterm.name)::text = 'chromosome_fission'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_deficiency'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'pericentric_inversion'::text)) OR ((cvterm.name)::text = 'paracentric_inversion'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'translocation_element'::text)) OR ((cvterm.name)::text = 'Robertsonian_fusion'::text)) OR ((cvterm.name)::text = 'reciprocal_chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'cyclic_translocation'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_duplication'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'free_duplication'::text)) OR ((cvterm.name)::text = 'insertional_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'uninverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'inverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'unoriented_insertional_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome_arm'::text)) OR ((cvterm.name)::text = 'homo_compound_chromosome'::text)) OR ((cvterm.name)::text = 'hetero_compound_chromosome'::text)) OR ((cvterm.name)::text = 'dexstrosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'laevosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'partially_characterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'chromosome_variation'::text));
- --
- -- Name: circular; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW circular AS
- SELECT feature.feature_id AS circular_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'circular'::text);
- --
- -- Name: circular_double_stranded_dna_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW circular_double_stranded_dna_chromosome AS
- SELECT feature.feature_id AS circular_double_stranded_dna_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'circular_double_stranded_DNA_chromosome'::text);
- --
- -- Name: circular_double_stranded_rna_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW circular_double_stranded_rna_chromosome AS
- SELECT feature.feature_id AS circular_double_stranded_rna_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text);
- --
- -- Name: circular_single_stranded_dna_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW circular_single_stranded_dna_chromosome AS
- SELECT feature.feature_id AS circular_single_stranded_dna_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'circular_single_stranded_DNA_chromosome'::text);
- --
- -- Name: circular_single_stranded_rna_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW circular_single_stranded_rna_chromosome AS
- SELECT feature.feature_id AS circular_single_stranded_rna_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'circular_single_stranded_RNA_chromosome'::text);
- --
- -- Name: cis_regulatory_frameshift_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cis_regulatory_frameshift_element AS
- SELECT feature.feature_id AS cis_regulatory_frameshift_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cis_regulatory_frameshift_element'::text);
- --
- -- Name: cis_splice_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cis_splice_site AS
- SELECT feature.feature_id AS cis_splice_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'five_prime_cis_splice_site'::text) OR ((cvterm.name)::text = 'three_prime_cis_splice_site'::text)) OR ((cvterm.name)::text = 'recursive_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'cis_splice_site'::text));
- --
- -- Name: class_i_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW class_i_rna AS
- SELECT feature.feature_id AS class_i_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'class_I_RNA'::text);
- --
- -- Name: class_ii_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW class_ii_rna AS
- SELECT feature.feature_id AS class_ii_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'class_II_RNA'::text);
- --
- -- Name: cleaved_for_gpi_anchor_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cleaved_for_gpi_anchor_region AS
- SELECT feature.feature_id AS cleaved_for_gpi_anchor_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cleaved_for_gpi_anchor_region'::text);
- --
- -- Name: cleaved_initiator_methionine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cleaved_initiator_methionine AS
- SELECT feature.feature_id AS cleaved_initiator_methionine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cleaved_initiator_methionine'::text);
- --
- -- Name: cleaved_peptide_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cleaved_peptide_region AS
- SELECT feature.feature_id AS cleaved_peptide_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((cvterm.name)::text = 'cleaved_initiator_methionine'::text) OR ((cvterm.name)::text = 'intein'::text)) OR ((cvterm.name)::text = 'propeptide_cleavage_site'::text)) OR ((cvterm.name)::text = 'propeptide'::text)) OR ((cvterm.name)::text = 'cleaved_for_gpi_anchor_region'::text)) OR ((cvterm.name)::text = 'lipoprotein_signal_peptide'::text)) OR ((cvterm.name)::text = 'n_terminal_region'::text)) OR ((cvterm.name)::text = 'c_terminal_region'::text)) OR ((cvterm.name)::text = 'central_hydrophobic_region_of_signal_peptide'::text)) OR ((cvterm.name)::text = 'cleaved_peptide_region'::text));
- --
- -- Name: clip; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW clip AS
- SELECT feature.feature_id AS clip_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'five_prime_clip'::text) OR ((cvterm.name)::text = 'three_prime_clip'::text)) OR ((cvterm.name)::text = 'clip'::text));
- --
- -- Name: clone; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW clone AS
- SELECT feature.feature_id AS clone_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((cvterm.name)::text = 'genomic_clone'::text) OR ((cvterm.name)::text = 'cDNA_clone'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'validated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'invalidated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'three_prime_RACE_clone'::text)) OR ((cvterm.name)::text = 'chimeric_cDNA_clone'::text)) OR ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'clone'::text));
- --
- -- Name: clone_end; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW clone_end AS
- SELECT feature.feature_id AS clone_end_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'clone_end'::text);
- --
- -- Name: clone_insert; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW clone_insert AS
- SELECT feature.feature_id AS clone_insert_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'cloned_cDNA_insert'::text) OR ((cvterm.name)::text = 'cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'BAC_cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'clone_insert'::text));
- --
- -- Name: clone_insert_end; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW clone_insert_end AS
- SELECT feature.feature_id AS clone_insert_end_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'clone_insert_end'::text);
- --
- -- Name: clone_insert_start; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW clone_insert_start AS
- SELECT feature.feature_id AS clone_insert_start_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'clone_insert_start'::text);
- --
- -- Name: cloned_cdna_insert; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cloned_cdna_insert AS
- SELECT feature.feature_id AS cloned_cdna_insert_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cloned_cDNA_insert'::text);
- --
- -- Name: cloned_genomic_insert; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cloned_genomic_insert AS
- SELECT feature.feature_id AS cloned_genomic_insert_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'BAC_cloned_genomic_insert'::text) OR ((cvterm.name)::text = 'cloned_genomic_insert'::text));
- --
- -- Name: cloned_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cloned_region AS
- SELECT feature.feature_id AS cloned_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cloned_region'::text);
- --
- -- Name: coding_conserved_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW coding_conserved_region AS
- SELECT feature.feature_id AS coding_conserved_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'coding_conserved_region'::text);
- --
- -- Name: coding_end; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW coding_end AS
- SELECT feature.feature_id AS coding_end_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'coding_end'::text);
- --
- -- Name: coding_exon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW coding_exon AS
- SELECT feature.feature_id AS coding_exon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'interior_coding_exon'::text) OR ((cvterm.name)::text = 'five_prime_coding_exon'::text)) OR ((cvterm.name)::text = 'three_prime_coding_exon'::text)) OR ((cvterm.name)::text = 'coding_exon'::text));
- --
- -- Name: coding_region_of_exon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW coding_region_of_exon AS
- SELECT feature.feature_id AS coding_region_of_exon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'five_prime_coding_exon_coding_region'::text) OR ((cvterm.name)::text = 'three_prime_coding_exon_coding_region'::text)) OR ((cvterm.name)::text = 'coding_region_of_exon'::text));
- --
- -- Name: coding_sequence_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW coding_sequence_variant AS
- SELECT feature.feature_id AS coding_sequence_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((cvterm.name)::text = 'codon_variant'::text) OR ((cvterm.name)::text = 'frameshift_variant'::text)) OR ((cvterm.name)::text = 'inframe_variant'::text)) OR ((cvterm.name)::text = 'initiator_codon_change'::text)) OR ((cvterm.name)::text = 'non_synonymous_codon'::text)) OR ((cvterm.name)::text = 'synonymous_codon'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_gained'::text)) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text)) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'frame_restoring_variant'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_2_frameshift variant'::text)) OR ((cvterm.name)::text = 'inframe_codon_gain'::text)) OR ((cvterm.name)::text = 'inframe_codon_loss'::text)) OR ((cvterm.name)::text = 'coding_sequence_variant'::text));
- --
- -- Name: coding_start; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW coding_start AS
- SELECT feature.feature_id AS coding_start_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'coding_start'::text);
- --
- -- Name: codon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW codon AS
- SELECT feature.feature_id AS codon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((cvterm.name)::text = 'recoded_codon'::text) OR ((cvterm.name)::text = 'start_codon'::text)) OR ((cvterm.name)::text = 'stop_codon'::text)) OR ((cvterm.name)::text = 'stop_codon_read_through'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'non_canonical_start_codon'::text)) OR ((cvterm.name)::text = 'four_bp_start_codon'::text)) OR ((cvterm.name)::text = 'CTG_start_codon'::text)) OR ((cvterm.name)::text = 'codon'::text));
- --
- -- Name: codon_redefined; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW codon_redefined AS
- SELECT feature.feature_id AS codon_redefined_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'codon_redefined'::text);
- --
- -- Name: codon_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW codon_variant AS
- SELECT feature.feature_id AS codon_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((cvterm.name)::text = 'initiator_codon_change'::text) OR ((cvterm.name)::text = 'non_synonymous_codon'::text)) OR ((cvterm.name)::text = 'synonymous_codon'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_gained'::text)) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text)) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'codon_variant'::text));
- --
- -- Name: coiled_coil; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW coiled_coil AS
- SELECT feature.feature_id AS coiled_coil_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'coiled_coil'::text);
- --
- -- Name: cointegrated_plasmid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cointegrated_plasmid AS
- SELECT feature.feature_id AS cointegrated_plasmid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cointegrated_plasmid'::text);
- --
- -- Name: common_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW common_variant AS
- SELECT feature.feature_id AS common_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'common_variant'::text);
- --
- -- Name: compensatory_transcript_secondary_structure_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW compensatory_transcript_secondary_structure_variant AS
- SELECT feature.feature_id AS compensatory_transcript_secondary_structure_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'compensatory_transcript_secondary_structure_variant'::text);
- --
- -- Name: complex_3d_structural_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW complex_3d_structural_variant AS
- SELECT feature.feature_id AS complex_3d_structural_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'complex_3D_structural_variant'::text);
- --
- -- Name: complex_change_in_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW complex_change_in_transcript AS
- SELECT feature.feature_id AS complex_change_in_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'complex_change_in_transcript'::text);
- --
- -- Name: complex_change_of_translational_product_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW complex_change_of_translational_product_variant AS
- SELECT feature.feature_id AS complex_change_of_translational_product_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'complex_change_of_translational_product_variant'::text);
- --
- -- Name: complex_chromosomal_mutation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW complex_chromosomal_mutation AS
- SELECT feature.feature_id AS complex_chromosomal_mutation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'complex_chromosomal_mutation'::text);
- --
- -- Name: complex_structural_alteration; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW complex_structural_alteration AS
- SELECT feature.feature_id AS complex_structural_alteration_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'complex_structural_alteration'::text);
- --
- -- Name: complex_substitution; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW complex_substitution AS
- SELECT feature.feature_id AS complex_substitution_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'complex_substitution'::text);
- --
- -- Name: compositionally_biased_region_of_peptide; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW compositionally_biased_region_of_peptide AS
- SELECT feature.feature_id AS compositionally_biased_region_of_peptide_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'compositionally_biased_region_of_peptide'::text);
- --
- -- Name: compound_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW compound_chromosome AS
- SELECT feature.feature_id AS compound_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'compound_chromosome_arm'::text) OR ((cvterm.name)::text = 'homo_compound_chromosome'::text)) OR ((cvterm.name)::text = 'hetero_compound_chromosome'::text)) OR ((cvterm.name)::text = 'compound_chromosome'::text));
- --
- -- Name: compound_chromosome_arm; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW compound_chromosome_arm AS
- SELECT feature.feature_id AS compound_chromosome_arm_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'compound_chromosome_arm'::text);
- --
- -- Name: conformational_change_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW conformational_change_variant AS
- SELECT feature.feature_id AS conformational_change_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'conformational_change_variant'::text);
- --
- -- Name: conformational_switch; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW conformational_switch AS
- SELECT feature.feature_id AS conformational_switch_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'conformational_switch'::text);
- --
- -- Name: conjugative_transposon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW conjugative_transposon AS
- SELECT feature.feature_id AS conjugative_transposon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'conjugative_transposon'::text);
- --
- -- Name: consensus; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW consensus AS
- SELECT feature.feature_id AS consensus_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'consensus'::text);
- --
- -- Name: consensus_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW consensus_mrna AS
- SELECT feature.feature_id AS consensus_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'consensus_mRNA'::text);
- --
- -- Name: consensus_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW consensus_region AS
- SELECT feature.feature_id AS consensus_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'consensus_mRNA'::text) OR ((cvterm.name)::text = 'consensus_region'::text));
- --
- -- Name: conservative_amino_acid_substitution; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW conservative_amino_acid_substitution AS
- SELECT feature.feature_id AS conservative_amino_acid_substitution_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'conservative_amino_acid_substitution'::text);
- --
- -- Name: conservative_missense_codon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW conservative_missense_codon AS
- SELECT feature.feature_id AS conservative_missense_codon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'conservative_missense_codon'::text);
- --
- -- Name: conserved; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW conserved AS
- SELECT feature.feature_id AS conserved_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'homologous'::text) OR ((cvterm.name)::text = 'syntenic'::text)) OR ((cvterm.name)::text = 'orthologous'::text)) OR ((cvterm.name)::text = 'paralogous'::text)) OR ((cvterm.name)::text = 'conserved'::text));
- --
- -- Name: conserved_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW conserved_region AS
- SELECT feature.feature_id AS conserved_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((cvterm.name)::text = 'coding_conserved_region'::text) OR ((cvterm.name)::text = 'nc_conserved_region'::text)) OR ((cvterm.name)::text = 'RR_tract'::text)) OR ((cvterm.name)::text = 'homologous_region'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_I'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_II'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_III'::text)) OR ((cvterm.name)::text = 'X_element'::text)) OR ((cvterm.name)::text = 'U_box'::text)) OR ((cvterm.name)::text = 'regional_centromere_central_core'::text)) OR ((cvterm.name)::text = 'syntenic_region'::text)) OR ((cvterm.name)::text = 'paralogous_region'::text)) OR ((cvterm.name)::text = 'orthologous_region'::text)) OR ((cvterm.name)::text = 'conserved_region'::text));
- --
- -- Name: contig; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW contig AS
- SELECT feature.feature_id AS contig_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'contig'::text);
- --
- -- Name: contig_collection; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW contig_collection AS
- SELECT feature.feature_id AS contig_collection_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'contig_collection'::text);
- --
- -- Name: contig_read; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW contig_read AS
- SELECT feature.feature_id AS contig_read_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'contig_read'::text);
- --
- -- Name: copy_number_change; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW copy_number_change AS
- SELECT feature.feature_id AS copy_number_change_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'copy_number_change'::text);
- --
- -- Name: copy_number_gain; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW copy_number_gain AS
- SELECT feature.feature_id AS copy_number_gain_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'copy_number_gain'::text);
- --
- -- Name: copy_number_loss; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW copy_number_loss AS
- SELECT feature.feature_id AS copy_number_loss_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'copy_number_loss'::text);
- --
- -- Name: copy_number_variation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW copy_number_variation AS
- SELECT feature.feature_id AS copy_number_variation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'copy_number_gain'::text) OR ((cvterm.name)::text = 'copy_number_loss'::text)) OR ((cvterm.name)::text = 'copy_number_variation'::text));
- --
- -- Name: core_promoter_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW core_promoter_element AS
- SELECT feature.feature_id AS core_promoter_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((cvterm.name)::text = 'INR_motif'::text) OR ((cvterm.name)::text = 'DPE_motif'::text)) OR ((cvterm.name)::text = 'BREu_motif'::text)) OR ((cvterm.name)::text = 'TATA_box'::text)) OR ((cvterm.name)::text = 'A_box'::text)) OR ((cvterm.name)::text = 'B_box'::text)) OR ((cvterm.name)::text = 'C_box'::text)) OR ((cvterm.name)::text = 'MTE'::text)) OR ((cvterm.name)::text = 'BREd_motif'::text)) OR ((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'core_promoter_element'::text));
- --
- -- Name: cosmid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cosmid AS
- SELECT feature.feature_id AS cosmid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cosmid'::text);
- --
- -- Name: cpg_island; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cpg_island AS
- SELECT feature.feature_id AS cpg_island_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'CpG_island'::text);
- --
- -- Name: crispr; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW crispr AS
- SELECT feature.feature_id AS crispr_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'CRISPR'::text);
- --
- -- Name: crm; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW crm AS
- SELECT feature.feature_id AS crm_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'locus_control_region'::text) OR ((cvterm.name)::text = 'enhancer'::text)) OR ((cvterm.name)::text = 'silencer'::text)) OR ((cvterm.name)::text = 'enhancer_bound_by_factor'::text)) OR ((cvterm.name)::text = 'shadow_enhancer'::text)) OR ((cvterm.name)::text = 'CRM'::text));
- --
- -- Name: cross_genome_match; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cross_genome_match AS
- SELECT feature.feature_id AS cross_genome_match_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cross_genome_match'::text);
- --
- -- Name: cryptic; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cryptic AS
- SELECT feature.feature_id AS cryptic_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cryptic'::text);
- --
- -- Name: cryptic_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cryptic_gene AS
- SELECT feature.feature_id AS cryptic_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'cryptogene'::text) OR ((cvterm.name)::text = 'cryptic_gene'::text));
- --
- -- Name: cryptic_prophage; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cryptic_prophage AS
- SELECT feature.feature_id AS cryptic_prophage_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cryptic_prophage'::text);
- --
- -- Name: cryptic_splice_acceptor; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cryptic_splice_acceptor AS
- SELECT feature.feature_id AS cryptic_splice_acceptor_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cryptic_splice_acceptor'::text);
- --
- -- Name: cryptic_splice_donor; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cryptic_splice_donor AS
- SELECT feature.feature_id AS cryptic_splice_donor_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cryptic_splice_donor'::text);
- --
- -- Name: cryptic_splice_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cryptic_splice_site AS
- SELECT feature.feature_id AS cryptic_splice_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cryptic_splice_site'::text);
- --
- -- Name: cryptic_splice_site_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cryptic_splice_site_variant AS
- SELECT feature.feature_id AS cryptic_splice_site_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'cryptic_splice_acceptor'::text) OR ((cvterm.name)::text = 'cryptic_splice_donor'::text)) OR ((cvterm.name)::text = 'cryptic_splice_site_variant'::text));
- --
- -- Name: cryptogene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cryptogene AS
- SELECT feature.feature_id AS cryptogene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cryptogene'::text);
- --
- -- Name: csrb_rsmb_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW csrb_rsmb_rna AS
- SELECT feature.feature_id AS csrb_rsmb_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'CsrB_RsmB_RNA'::text);
- --
- -- Name: ct_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ct_gene AS
- SELECT feature.feature_id AS ct_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'ct_gene'::text);
- --
- -- Name: ctg_start_codon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ctg_start_codon AS
- SELECT feature.feature_id AS ctg_start_codon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'CTG_start_codon'::text);
- --
- -- Name: cyanelle_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cyanelle_chromosome AS
- SELECT feature.feature_id AS cyanelle_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cyanelle_chromosome'::text);
- --
- -- Name: cyanelle_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cyanelle_gene AS
- SELECT feature.feature_id AS cyanelle_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cyanelle_gene'::text);
- --
- -- Name: cyanelle_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cyanelle_sequence AS
- SELECT feature.feature_id AS cyanelle_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cyanelle_sequence'::text);
- --
- -- Name: cyclic_translocation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cyclic_translocation AS
- SELECT feature.feature_id AS cyclic_translocation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cyclic_translocation'::text);
- --
- -- Name: cysteine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cysteine AS
- SELECT feature.feature_id AS cysteine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cysteine'::text);
- --
- -- Name: cysteine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cysteine_trna_primary_transcript AS
- SELECT feature.feature_id AS cysteine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cysteine_tRNA_primary_transcript'::text);
- --
- -- Name: cysteinyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cysteinyl_trna AS
- SELECT feature.feature_id AS cysteinyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cysteinyl_tRNA'::text);
- --
- -- Name: cytoplasmic_polypeptide_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW cytoplasmic_polypeptide_region AS
- SELECT feature.feature_id AS cytoplasmic_polypeptide_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'cytoplasmic_polypeptide_region'::text);
- --
- -- Name: d_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW d_cluster AS
- SELECT feature.feature_id AS d_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'D_cluster'::text);
- --
- -- Name: d_dj_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW d_dj_c_cluster AS
- SELECT feature.feature_id AS d_dj_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'D_DJ_C_cluster'::text);
- --
- -- Name: d_dj_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW d_dj_cluster AS
- SELECT feature.feature_id AS d_dj_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'D_DJ_cluster'::text);
- --
- -- Name: d_dj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW d_dj_j_c_cluster AS
- SELECT feature.feature_id AS d_dj_j_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text);
- --
- -- Name: d_dj_j_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW d_dj_j_cluster AS
- SELECT feature.feature_id AS d_dj_j_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'D_DJ_J_cluster'::text);
- --
- -- Name: d_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW d_gene AS
- SELECT feature.feature_id AS d_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'D_gene'::text);
- --
- -- Name: d_gene_recombination_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW d_gene_recombination_feature AS
- SELECT feature.feature_id AS d_gene_recombination_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text));
- --
- -- Name: d_interchr_transposition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW d_interchr_transposition AS
- SELECT feature.feature_id AS d_interchr_transposition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text);
- --
- -- Name: d_intrachr_transposition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW d_intrachr_transposition AS
- SELECT feature.feature_id AS d_intrachr_transposition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text);
- --
- -- Name: d_j_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW d_j_c_cluster AS
- SELECT feature.feature_id AS d_j_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'D_J_C_cluster'::text);
- --
- -- Name: d_j_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW d_j_cluster AS
- SELECT feature.feature_id AS d_j_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'D_J_cluster'::text);
- --
- -- Name: d_loop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW d_loop AS
- SELECT feature.feature_id AS d_loop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'D_loop'::text);
- --
- -- Name: dart_marker; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dart_marker AS
- SELECT feature.feature_id AS dart_marker_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DArT_marker'::text);
- --
- -- Name: databank_entry; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW databank_entry AS
- SELECT feature.feature_id AS databank_entry_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'databank_entry'::text);
- --
- -- Name: dcaps_primer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dcaps_primer AS
- SELECT feature.feature_id AS dcaps_primer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'dCAPS_primer'::text);
- --
- -- Name: dce; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dce AS
- SELECT feature.feature_id AS dce_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DCE'::text);
- --
- -- Name: dce_si; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dce_si AS
- SELECT feature.feature_id AS dce_si_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DCE_SI'::text);
- --
- -- Name: dce_sii; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dce_sii AS
- SELECT feature.feature_id AS dce_sii_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DCE_SII'::text);
- --
- -- Name: dce_siii; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dce_siii AS
- SELECT feature.feature_id AS dce_siii_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DCE_SIII'::text);
- --
- -- Name: de_novo_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW de_novo_variant AS
- SELECT feature.feature_id AS de_novo_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'de_novo_variant'::text);
- --
- -- Name: decayed_exon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW decayed_exon AS
- SELECT feature.feature_id AS decayed_exon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'decayed_exon'::text);
- --
- -- Name: decreased_polyadenylation_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW decreased_polyadenylation_variant AS
- SELECT feature.feature_id AS decreased_polyadenylation_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'decreased_polyadenylation_variant'::text);
- --
- -- Name: decreased_transcript_level_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW decreased_transcript_level_variant AS
- SELECT feature.feature_id AS decreased_transcript_level_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'decreased_transcript_level_variant'::text);
- --
- -- Name: decreased_transcript_stability_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW decreased_transcript_stability_variant AS
- SELECT feature.feature_id AS decreased_transcript_stability_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'decreased_transcript_stability_variant'::text);
- --
- -- Name: decreased_transcription_rate_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW decreased_transcription_rate_variant AS
- SELECT feature.feature_id AS decreased_transcription_rate_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'decreased_transcription_rate_variant'::text);
- --
- -- Name: decreased_translational_product_level; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW decreased_translational_product_level AS
- SELECT feature.feature_id AS decreased_translational_product_level_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'decreased_translational_product_level'::text);
- --
- -- Name: defective_conjugative_transposon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW defective_conjugative_transposon AS
- SELECT feature.feature_id AS defective_conjugative_transposon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'defective_conjugative_transposon'::text);
- --
- -- Name: deficient_inversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW deficient_inversion AS
- SELECT feature.feature_id AS deficient_inversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'deficient_inversion'::text);
- --
- -- Name: deficient_translocation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW deficient_translocation AS
- SELECT feature.feature_id AS deficient_translocation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'deficient_translocation'::text);
- --
- -- Name: deletion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW deletion AS
- SELECT feature.feature_id AS deletion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'deletion'::text);
- --
- -- Name: deletion_breakpoint; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW deletion_breakpoint AS
- SELECT feature.feature_id AS deletion_breakpoint_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'deletion_breakpoint'::text);
- --
- -- Name: deletion_junction; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW deletion_junction AS
- SELECT feature.feature_id AS deletion_junction_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'deletion_junction'::text);
- --
- -- Name: designed_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW designed_sequence AS
- SELECT feature.feature_id AS designed_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'designed_sequence'::text);
- --
- -- Name: dexstrosynaptic_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dexstrosynaptic_chromosome AS
- SELECT feature.feature_id AS dexstrosynaptic_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'dexstrosynaptic_chromosome'::text);
- --
- -- Name: dhu_loop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dhu_loop AS
- SELECT feature.feature_id AS dhu_loop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DHU_loop'::text);
- --
- -- Name: dicistronic; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dicistronic AS
- SELECT feature.feature_id AS dicistronic_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'dicistronic'::text);
- --
- -- Name: dicistronic_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dicistronic_mrna AS
- SELECT feature.feature_id AS dicistronic_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'dicistronic_mRNA'::text);
- --
- -- Name: dicistronic_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dicistronic_primary_transcript AS
- SELECT feature.feature_id AS dicistronic_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'dicistronic_primary_transcript'::text);
- --
- -- Name: dicistronic_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dicistronic_transcript AS
- SELECT feature.feature_id AS dicistronic_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'dicistronic_mRNA'::text) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_transcript'::text));
- --
- -- Name: dif_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dif_site AS
- SELECT feature.feature_id AS dif_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'dif_site'::text);
- --
- -- Name: dihydrouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dihydrouridine AS
- SELECT feature.feature_id AS dihydrouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'dihydrouridine'::text);
- --
- -- Name: dinucleotide_repeat_microsatellite_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dinucleotide_repeat_microsatellite_feature AS
- SELECT feature.feature_id AS dinucleotide_repeat_microsatellite_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'dinucleotide_repeat_microsatellite_feature'::text);
- --
- -- Name: diplotype; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW diplotype AS
- SELECT feature.feature_id AS diplotype_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'diplotype'::text);
- --
- -- Name: direct; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW direct AS
- SELECT feature.feature_id AS direct_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'direct'::text);
- --
- -- Name: direct_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW direct_repeat AS
- SELECT feature.feature_id AS direct_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'target_site_duplication'::text) OR ((cvterm.name)::text = 'CRISPR'::text)) OR ((cvterm.name)::text = 'direct_repeat'::text));
- --
- -- Name: direct_tandem_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW direct_tandem_duplication AS
- SELECT feature.feature_id AS direct_tandem_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'direct_tandem_duplication'::text);
- --
- -- Name: direction_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW direction_attribute AS
- SELECT feature.feature_id AS direction_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'forward'::text) OR ((cvterm.name)::text = 'reverse'::text)) OR ((cvterm.name)::text = 'direction_attribute'::text));
- --
- -- Name: disease_associated_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW disease_associated_variant AS
- SELECT feature.feature_id AS disease_associated_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'disease_associated_variant'::text);
- --
- -- Name: disease_causing_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW disease_causing_variant AS
- SELECT feature.feature_id AS disease_causing_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'disease_causing_variant'::text);
- --
- -- Name: dispersed_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dispersed_repeat AS
- SELECT feature.feature_id AS dispersed_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'dispersed_repeat'::text);
- --
- -- Name: distal_promoter_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW distal_promoter_element AS
- SELECT feature.feature_id AS distal_promoter_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'distal_promoter_element'::text);
- --
- -- Name: distant_three_prime_recoding_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW distant_three_prime_recoding_signal AS
- SELECT feature.feature_id AS distant_three_prime_recoding_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'distant_three_prime_recoding_signal'::text);
- --
- -- Name: dj_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dj_c_cluster AS
- SELECT feature.feature_id AS dj_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DJ_C_cluster'::text);
- --
- -- Name: dj_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dj_gene AS
- SELECT feature.feature_id AS dj_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DJ_gene'::text);
- --
- -- Name: dj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dj_j_c_cluster AS
- SELECT feature.feature_id AS dj_j_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DJ_J_C_cluster'::text);
- --
- -- Name: dj_j_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dj_j_cluster AS
- SELECT feature.feature_id AS dj_j_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DJ_J_cluster'::text);
- --
- -- Name: dmv1_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dmv1_motif AS
- SELECT feature.feature_id AS dmv1_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DMv1_motif'::text);
- --
- -- Name: dmv2_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dmv2_motif AS
- SELECT feature.feature_id AS dmv2_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DMv2_motif'::text);
- --
- -- Name: dmv3_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dmv3_motif AS
- SELECT feature.feature_id AS dmv3_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DMv3_motif'::text);
- --
- -- Name: dmv4_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dmv4_motif AS
- SELECT feature.feature_id AS dmv4_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DMv4_motif'::text);
- --
- -- Name: dmv5_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dmv5_motif AS
- SELECT feature.feature_id AS dmv5_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DMv5_motif'::text);
- --
- -- Name: dna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dna AS
- SELECT feature.feature_id AS dna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'cDNA'::text) OR ((cvterm.name)::text = 'genomic_DNA'::text)) OR ((cvterm.name)::text = 'single_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'double_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'DNA'::text));
- --
- -- Name: dna_aptamer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dna_aptamer AS
- SELECT feature.feature_id AS dna_aptamer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DNA_aptamer'::text);
- --
- -- Name: dna_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dna_binding_site AS
- SELECT feature.feature_id AS dna_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'polypeptide_DNA_contact'::text) OR ((cvterm.name)::text = 'DNA_binding_site'::text));
- --
- -- Name: dna_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dna_chromosome AS
- SELECT feature.feature_id AS dna_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'double_stranded_DNA_chromosome'::text) OR ((cvterm.name)::text = 'single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'DNA_chromosome'::text));
- --
- -- Name: dna_constraint_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dna_constraint_sequence AS
- SELECT feature.feature_id AS dna_constraint_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DNA_constraint_sequence'::text);
- --
- -- Name: dna_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dna_motif AS
- SELECT feature.feature_id AS dna_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'PSE_motif'::text) OR ((cvterm.name)::text = 'CAAT_signal'::text)) OR ((cvterm.name)::text = 'minus_10_signal'::text)) OR ((cvterm.name)::text = 'minus_35_signal'::text)) OR ((cvterm.name)::text = 'DRE_motif'::text)) OR ((cvterm.name)::text = 'E_box_motif'::text)) OR ((cvterm.name)::text = 'INR1_motif'::text)) OR ((cvterm.name)::text = 'GAGA_motif'::text)) OR ((cvterm.name)::text = 'octamer_motif'::text)) OR ((cvterm.name)::text = 'retinoic_acid_responsive_element'::text)) OR ((cvterm.name)::text = 'promoter_element'::text)) OR ((cvterm.name)::text = 'DCE_SI'::text)) OR ((cvterm.name)::text = 'DCE_SII'::text)) OR ((cvterm.name)::text = 'DCE_SIII'::text)) OR ((cvterm.name)::text = 'minus_12_signal'::text)) OR ((cvterm.name)::text = 'minus_24_signal'::text)) OR ((cvterm.name)::text = 'GC_rich_promoter_region'::text)) OR ((cvterm.name)::text = 'DMv4_motif'::text)) OR ((cvterm.name)::text = 'DMv5_motif'::text)) OR ((cvterm.name)::text = 'DMv3_motif'::text)) OR ((cvterm.name)::text = 'DMv2_motif'::text)) OR ((cvterm.name)::text = 'DPE1_motif'::text)) OR ((cvterm.name)::text = 'DMv1_motif'::text)) OR ((cvterm.name)::text = 'NDM2_motif'::text)) OR ((cvterm.name)::text = 'NDM3_motif'::text)) OR ((cvterm.name)::text = 'core_promoter_element'::text)) OR ((cvterm.name)::text = 'regulatory_promoter_element'::text)) OR ((cvterm.name)::text = 'INR_motif'::text)) OR ((cvterm.name)::text = 'DPE_motif'::text)) OR ((cvterm.name)::text = 'BREu_motif'::text)) OR ((cvterm.name)::text = 'TATA_box'::text)) OR ((cvterm.name)::text = 'A_box'::text)) OR ((cvterm.name)::text = 'B_box'::text)) OR ((cvterm.name)::text = 'C_box'::text)) OR ((cvterm.name)::text = 'MTE'::text)) OR ((cvterm.name)::text = 'BREd_motif'::text)) OR ((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'proximal_promoter_element'::text)) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'DNA_motif'::text));
- --
- -- Name: dna_sequence_secondary_structure; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dna_sequence_secondary_structure AS
- SELECT feature.feature_id AS dna_sequence_secondary_structure_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'i_motif'::text) OR ((cvterm.name)::text = 'DNA_sequence_secondary_structure'::text));
- --
- -- Name: dna_transposon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dna_transposon AS
- SELECT feature.feature_id AS dna_transposon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((cvterm.name)::text = 'terminal_inverted_repeat_element'::text) OR ((cvterm.name)::text = 'foldback_element'::text)) OR ((cvterm.name)::text = 'conjugative_transposon'::text)) OR ((cvterm.name)::text = 'helitron'::text)) OR ((cvterm.name)::text = 'p_element'::text)) OR ((cvterm.name)::text = 'MITE'::text)) OR ((cvterm.name)::text = 'insertion_sequence'::text)) OR ((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'DNA_transposon'::text));
- --
- -- Name: dnasei_hypersensitive_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dnasei_hypersensitive_site AS
- SELECT feature.feature_id AS dnasei_hypersensitive_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text);
- --
- -- Name: dnazyme; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dnazyme AS
- SELECT feature.feature_id AS dnazyme_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DNAzyme'::text);
- --
- -- Name: double; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW double AS
- SELECT feature.feature_id AS double_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'double'::text);
- --
- -- Name: double_stranded_cdna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW double_stranded_cdna AS
- SELECT feature.feature_id AS double_stranded_cdna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'double_stranded_cDNA'::text);
- --
- -- Name: double_stranded_dna_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW double_stranded_dna_chromosome AS
- SELECT feature.feature_id AS double_stranded_dna_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'linear_double_stranded_DNA_chromosome'::text) OR ((cvterm.name)::text = 'circular_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_DNA_chromosome'::text));
- --
- -- Name: double_stranded_rna_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW double_stranded_rna_chromosome AS
- SELECT feature.feature_id AS double_stranded_rna_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text) OR ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_RNA_chromosome'::text));
- --
- -- Name: downstream_gene_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW downstream_gene_variant AS
- SELECT feature.feature_id AS downstream_gene_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = '5KB_downstream_variant'::text) OR ((cvterm.name)::text = '500B_downstream_variant'::text)) OR ((cvterm.name)::text = 'downstream_gene_variant'::text));
- --
- -- Name: dpe1_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dpe1_motif AS
- SELECT feature.feature_id AS dpe1_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DPE1_motif'::text);
- --
- -- Name: dpe_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dpe_motif AS
- SELECT feature.feature_id AS dpe_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DPE_motif'::text);
- --
- -- Name: dre_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dre_motif AS
- SELECT feature.feature_id AS dre_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'DRE_motif'::text);
- --
- -- Name: ds_dna_viral_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ds_dna_viral_sequence AS
- SELECT feature.feature_id AS ds_dna_viral_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text);
- --
- -- Name: ds_oligo; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ds_oligo AS
- SELECT feature.feature_id AS ds_oligo_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'RNAi_reagent'::text) OR ((cvterm.name)::text = 'DNA_constraint_sequence'::text)) OR ((cvterm.name)::text = 'ds_oligo'::text));
- --
- -- Name: ds_rna_viral_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ds_rna_viral_sequence AS
- SELECT feature.feature_id AS ds_rna_viral_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text);
- --
- -- Name: dsra_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dsra_rna AS
- SELECT feature.feature_id AS dsra_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'GcvB_RNA'::text) OR ((cvterm.name)::text = 'DsrA_RNA'::text));
- --
- -- Name: duplicated_pseudogene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW duplicated_pseudogene AS
- SELECT feature.feature_id AS duplicated_pseudogene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'duplicated_pseudogene'::text);
- --
- -- Name: duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW duplication AS
- SELECT feature.feature_id AS duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'tandem_duplication'::text) OR ((cvterm.name)::text = 'direct_tandem_duplication'::text)) OR ((cvterm.name)::text = 'inverted_tandem_duplication'::text)) OR ((cvterm.name)::text = 'duplication'::text));
- --
- -- Name: duplication_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW duplication_attribute AS
- SELECT feature.feature_id AS duplication_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'free'::text) OR ((cvterm.name)::text = 'duplication_attribute'::text));
- --
- -- Name: dye_terminator_read; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW dye_terminator_read AS
- SELECT feature.feature_id AS dye_terminator_read_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'dye_terminator_read'::text);
- --
- -- Name: e_box_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW e_box_motif AS
- SELECT feature.feature_id AS e_box_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'E_box_motif'::text);
- --
- -- Name: edited; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW edited AS
- SELECT feature.feature_id AS edited_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'edited'::text);
- --
- -- Name: edited_cds; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW edited_cds AS
- SELECT feature.feature_id AS edited_cds_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'edited_CDS'::text);
- --
- -- Name: edited_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW edited_mrna AS
- SELECT feature.feature_id AS edited_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'edited_mRNA'::text);
- --
- -- Name: edited_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW edited_transcript AS
- SELECT feature.feature_id AS edited_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'edited_transcript_by_A_to_I_substitution'::text) OR ((cvterm.name)::text = 'edited_mRNA'::text)) OR ((cvterm.name)::text = 'edited_transcript'::text));
- --
- -- Name: edited_transcript_by_a_to_i_substitution; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW edited_transcript_by_a_to_i_substitution AS
- SELECT feature.feature_id AS edited_transcript_by_a_to_i_substitution_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'edited_transcript_by_A_to_I_substitution'::text);
- --
- -- Name: edited_transcript_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW edited_transcript_feature AS
- SELECT feature.feature_id AS edited_transcript_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'pre_edited_region'::text) OR ((cvterm.name)::text = 'editing_block'::text)) OR ((cvterm.name)::text = 'editing_domain'::text)) OR ((cvterm.name)::text = 'unedited_region'::text)) OR ((cvterm.name)::text = 'edited_transcript_feature'::text));
- --
- -- Name: editing_block; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW editing_block AS
- SELECT feature.feature_id AS editing_block_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'editing_block'::text);
- --
- -- Name: editing_domain; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW editing_domain AS
- SELECT feature.feature_id AS editing_domain_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'editing_domain'::text);
- --
- -- Name: editing_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW editing_variant AS
- SELECT feature.feature_id AS editing_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'editing_variant'::text);
- --
- -- Name: elongated_in_frame_polypeptide_c_terminal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW elongated_in_frame_polypeptide_c_terminal AS
- SELECT feature.feature_id AS elongated_in_frame_polypeptide_c_terminal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text);
- --
- -- Name: elongated_in_frame_polypeptide_n_terminal_elongation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW elongated_in_frame_polypeptide_n_terminal_elongation AS
- SELECT feature.feature_id AS elongated_in_frame_polypeptide_n_terminal_elongation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text);
- --
- -- Name: elongated_out_of_frame_polypeptide_c_terminal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW elongated_out_of_frame_polypeptide_c_terminal AS
- SELECT feature.feature_id AS elongated_out_of_frame_polypeptide_c_terminal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text);
- --
- -- Name: elongated_out_of_frame_polypeptide_n_terminal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW elongated_out_of_frame_polypeptide_n_terminal AS
- SELECT feature.feature_id AS elongated_out_of_frame_polypeptide_n_terminal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text);
- --
- -- Name: elongated_polypeptide; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW elongated_polypeptide AS
- SELECT feature.feature_id AS elongated_polypeptide_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'elongated_polypeptide_C_terminal'::text) OR ((cvterm.name)::text = 'elongated_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide'::text));
- --
- -- Name: elongated_polypeptide_c_terminal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW elongated_polypeptide_c_terminal AS
- SELECT feature.feature_id AS elongated_polypeptide_c_terminal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_C_terminal'::text));
- --
- -- Name: elongated_polypeptide_n_terminal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW elongated_polypeptide_n_terminal AS
- SELECT feature.feature_id AS elongated_polypeptide_n_terminal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_N_terminal'::text));
- --
- -- Name: encodes_1_polypeptide; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW encodes_1_polypeptide AS
- SELECT feature.feature_id AS encodes_1_polypeptide_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'encodes_1_polypeptide'::text);
- --
- -- Name: encodes_alternate_transcription_start_sites; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW encodes_alternate_transcription_start_sites AS
- SELECT feature.feature_id AS encodes_alternate_transcription_start_sites_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'encodes_alternate_transcription_start_sites'::text);
- --
- -- Name: encodes_alternately_spliced_transcripts; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW encodes_alternately_spliced_transcripts AS
- SELECT feature.feature_id AS encodes_alternately_spliced_transcripts_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'encodes_1_polypeptide'::text) OR ((cvterm.name)::text = 'encodes_greater_than_1_polypeptide'::text)) OR ((cvterm.name)::text = 'encodes_disjoint_polypeptides'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides'::text)) OR ((cvterm.name)::text = 'encodes_different_polypeptides_different_stop'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides_different_start'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_polypeptides_different_start_and_stop'::text)) OR ((cvterm.name)::text = 'encodes_alternately_spliced_transcripts'::text));
- --
- -- Name: encodes_different_polypeptides_different_stop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW encodes_different_polypeptides_different_stop AS
- SELECT feature.feature_id AS encodes_different_polypeptides_different_stop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'encodes_different_polypeptides_different_stop'::text);
- --
- -- Name: encodes_disjoint_polypeptides; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW encodes_disjoint_polypeptides AS
- SELECT feature.feature_id AS encodes_disjoint_polypeptides_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'encodes_disjoint_polypeptides'::text);
- --
- -- Name: encodes_greater_than_1_polypeptide; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW encodes_greater_than_1_polypeptide AS
- SELECT feature.feature_id AS encodes_greater_than_1_polypeptide_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'encodes_disjoint_polypeptides'::text) OR ((cvterm.name)::text = 'encodes_overlapping_peptides'::text)) OR ((cvterm.name)::text = 'encodes_different_polypeptides_different_stop'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides_different_start'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_polypeptides_different_start_and_stop'::text)) OR ((cvterm.name)::text = 'encodes_greater_than_1_polypeptide'::text));
- --
- -- Name: encodes_overlapping_peptides; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW encodes_overlapping_peptides AS
- SELECT feature.feature_id AS encodes_overlapping_peptides_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'encodes_different_polypeptides_different_stop'::text) OR ((cvterm.name)::text = 'encodes_overlapping_peptides_different_start'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_polypeptides_different_start_and_stop'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides'::text));
- --
- -- Name: encodes_overlapping_peptides_different_start; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW encodes_overlapping_peptides_different_start AS
- SELECT feature.feature_id AS encodes_overlapping_peptides_different_start_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'encodes_overlapping_peptides_different_start'::text);
- --
- -- Name: encodes_overlapping_polypeptides_different_start_and_stop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW encodes_overlapping_polypeptides_different_start_and_stop AS
- SELECT feature.feature_id AS encodes_overlapping_polypeptides_different_start_and_stop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'encodes_overlapping_polypeptides_different_start_and_stop'::text);
- --
- -- Name: endogenous_retroviral_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW endogenous_retroviral_gene AS
- SELECT feature.feature_id AS endogenous_retroviral_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'endogenous_retroviral_gene'::text);
- --
- -- Name: endogenous_retroviral_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW endogenous_retroviral_sequence AS
- SELECT feature.feature_id AS endogenous_retroviral_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'endogenous_retroviral_sequence'::text);
- --
- -- Name: endonuclease_spliced_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW endonuclease_spliced_intron AS
- SELECT feature.feature_id AS endonuclease_spliced_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'archaeal_intron'::text) OR ((cvterm.name)::text = 'tRNA_intron'::text)) OR ((cvterm.name)::text = 'endonuclease_spliced_intron'::text));
- --
- -- Name: endosomal_localization_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW endosomal_localization_signal AS
- SELECT feature.feature_id AS endosomal_localization_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'endosomal_localization_signal'::text);
- --
- -- Name: engineered; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered AS
- SELECT feature.feature_id AS engineered_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'engineered'::text);
- --
- -- Name: engineered_episome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered_episome AS
- SELECT feature.feature_id AS engineered_episome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'engineered_episome'::text);
- --
- -- Name: engineered_foreign_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered_foreign_gene AS
- SELECT feature.feature_id AS engineered_foreign_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text));
- --
- -- Name: engineered_foreign_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered_foreign_region AS
- SELECT feature.feature_id AS engineered_foreign_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'engineered_foreign_gene'::text) OR ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_region'::text));
- --
- -- Name: engineered_foreign_repetitive_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered_foreign_repetitive_element AS
- SELECT feature.feature_id AS engineered_foreign_repetitive_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text);
- --
- -- Name: engineered_foreign_transposable_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered_foreign_transposable_element AS
- SELECT feature.feature_id AS engineered_foreign_transposable_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text);
- --
- -- Name: engineered_foreign_transposable_element_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered_foreign_transposable_element_gene AS
- SELECT feature.feature_id AS engineered_foreign_transposable_element_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text);
- --
- -- Name: engineered_fusion_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered_fusion_gene AS
- SELECT feature.feature_id AS engineered_fusion_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'engineered_fusion_gene'::text);
- --
- -- Name: engineered_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered_gene AS
- SELECT feature.feature_id AS engineered_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'engineered_foreign_gene'::text) OR ((cvterm.name)::text = 'engineered_fusion_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_gene'::text));
- --
- -- Name: engineered_insert; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered_insert AS
- SELECT feature.feature_id AS engineered_insert_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'engineered_insert'::text);
- --
- -- Name: engineered_plasmid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered_plasmid AS
- SELECT feature.feature_id AS engineered_plasmid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'engineered_episome'::text) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_plasmid'::text));
- --
- -- Name: engineered_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered_region AS
- SELECT feature.feature_id AS engineered_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((cvterm.name)::text = 'engineered_gene'::text) OR ((cvterm.name)::text = 'engineered_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_region'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_fusion_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_region'::text));
- --
- -- Name: engineered_rescue_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered_rescue_region AS
- SELECT feature.feature_id AS engineered_rescue_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'engineered_rescue_region'::text);
- --
- -- Name: engineered_tag; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered_tag AS
- SELECT feature.feature_id AS engineered_tag_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'engineered_tag'::text);
- --
- -- Name: engineered_transposable_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW engineered_transposable_element AS
- SELECT feature.feature_id AS engineered_transposable_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'engineered_foreign_transposable_element'::text) OR ((cvterm.name)::text = 'engineered_transposable_element'::text));
- --
- -- Name: enhancer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW enhancer AS
- SELECT feature.feature_id AS enhancer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'enhancer_bound_by_factor'::text) OR ((cvterm.name)::text = 'shadow_enhancer'::text)) OR ((cvterm.name)::text = 'enhancer'::text));
- --
- -- Name: enhancer_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW enhancer_binding_site AS
- SELECT feature.feature_id AS enhancer_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'enhancer_binding_site'::text);
- --
- -- Name: enhancer_bound_by_factor; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW enhancer_bound_by_factor AS
- SELECT feature.feature_id AS enhancer_bound_by_factor_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'enhancer_bound_by_factor'::text);
- --
- -- Name: enhancer_trap_construct; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW enhancer_trap_construct AS
- SELECT feature.feature_id AS enhancer_trap_construct_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'enhancer_trap_construct'::text);
- --
- -- Name: enzymatic; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW enzymatic AS
- SELECT feature.feature_id AS enzymatic_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'ribozymic'::text) OR ((cvterm.name)::text = 'enzymatic'::text));
- --
- -- Name: enzymatic_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW enzymatic_rna AS
- SELECT feature.feature_id AS enzymatic_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'ribozyme'::text) OR ((cvterm.name)::text = 'enzymatic_RNA'::text));
- --
- -- Name: epigenetically_modified; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW epigenetically_modified AS
- SELECT feature.feature_id AS epigenetically_modified_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'imprinted'::text) OR ((cvterm.name)::text = 'allelically_excluded'::text)) OR ((cvterm.name)::text = 'rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'epigenetically_modified'::text));
- --
- -- Name: epigenetically_modified_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW epigenetically_modified_gene AS
- SELECT feature.feature_id AS epigenetically_modified_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'gene_rearranged_at_DNA_level'::text) OR ((cvterm.name)::text = 'maternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'paternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'allelically_excluded_gene'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_gene'::text));
- --
- -- Name: epigenetically_modified_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW epigenetically_modified_region AS
- SELECT feature.feature_id AS epigenetically_modified_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'modified_base'::text) OR ((cvterm.name)::text = 'epigenetically_modified_gene'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'methylated_base_feature'::text)) OR ((cvterm.name)::text = 'methylated_C'::text)) OR ((cvterm.name)::text = 'methylated_A'::text)) OR ((cvterm.name)::text = 'gene_rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'paternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'allelically_excluded_gene'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_region'::text));
- --
- -- Name: episome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW episome AS
- SELECT feature.feature_id AS episome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'engineered_episome'::text) OR ((cvterm.name)::text = 'episome'::text));
- --
- -- Name: epitope; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW epitope AS
- SELECT feature.feature_id AS epitope_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'epitope'::text);
- --
- -- Name: epoxyqueuosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW epoxyqueuosine AS
- SELECT feature.feature_id AS epoxyqueuosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'epoxyqueuosine'::text);
- --
- -- Name: est; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW est AS
- SELECT feature.feature_id AS est_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((cvterm.name)::text = 'five_prime_EST'::text) OR ((cvterm.name)::text = 'three_prime_EST'::text)) OR ((cvterm.name)::text = 'UST'::text)) OR ((cvterm.name)::text = 'RST'::text)) OR ((cvterm.name)::text = 'three_prime_UST'::text)) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'three_prime_RST'::text)) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'EST'::text));
- --
- -- Name: est_match; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW est_match AS
- SELECT feature.feature_id AS est_match_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'EST_match'::text);
- --
- -- Name: eukaryotic_terminator; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW eukaryotic_terminator AS
- SELECT feature.feature_id AS eukaryotic_terminator_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'terminator_of_type_2_RNApol_III_promoter'::text) OR ((cvterm.name)::text = 'eukaryotic_terminator'::text));
- --
- -- Name: exemplar; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW exemplar AS
- SELECT feature.feature_id AS exemplar_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'exemplar'::text);
- --
- -- Name: exemplar_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW exemplar_mrna AS
- SELECT feature.feature_id AS exemplar_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'exemplar_mRNA'::text);
- --
- -- Name: exon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW exon AS
- SELECT feature.feature_id AS exon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((cvterm.name)::text = 'coding_exon'::text) OR ((cvterm.name)::text = 'noncoding_exon'::text)) OR ((cvterm.name)::text = 'interior_exon'::text)) OR ((cvterm.name)::text = 'exon_of_single_exon_gene'::text)) OR ((cvterm.name)::text = 'interior_coding_exon'::text)) OR ((cvterm.name)::text = 'five_prime_coding_exon'::text)) OR ((cvterm.name)::text = 'three_prime_coding_exon'::text)) OR ((cvterm.name)::text = 'three_prime_noncoding_exon'::text)) OR ((cvterm.name)::text = 'five_prime_noncoding_exon'::text)) OR ((cvterm.name)::text = 'exon'::text));
- --
- -- Name: exon_junction; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW exon_junction AS
- SELECT feature.feature_id AS exon_junction_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'exon_junction'::text);
- --
- -- Name: exon_loss; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW exon_loss AS
- SELECT feature.feature_id AS exon_loss_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'exon_loss'::text);
- --
- -- Name: exon_of_single_exon_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW exon_of_single_exon_gene AS
- SELECT feature.feature_id AS exon_of_single_exon_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'exon_of_single_exon_gene'::text);
- --
- -- Name: exon_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW exon_region AS
- SELECT feature.feature_id AS exon_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'noncoding_region_of_exon'::text) OR ((cvterm.name)::text = 'coding_region_of_exon'::text)) OR ((cvterm.name)::text = 'three_prime_coding_exon_noncoding_region'::text)) OR ((cvterm.name)::text = 'five_prime_coding_exon_noncoding_region'::text)) OR ((cvterm.name)::text = 'five_prime_coding_exon_coding_region'::text)) OR ((cvterm.name)::text = 'three_prime_coding_exon_coding_region'::text)) OR ((cvterm.name)::text = 'exon_region'::text));
- --
- -- Name: exon_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW exon_variant AS
- SELECT feature.feature_id AS exon_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((cvterm.name)::text = 'coding_sequence_variant'::text) OR ((cvterm.name)::text = 'non_coding_exon_variant'::text)) OR ((cvterm.name)::text = 'codon_variant'::text)) OR ((cvterm.name)::text = 'frameshift_variant'::text)) OR ((cvterm.name)::text = 'inframe_variant'::text)) OR ((cvterm.name)::text = 'initiator_codon_change'::text)) OR ((cvterm.name)::text = 'non_synonymous_codon'::text)) OR ((cvterm.name)::text = 'synonymous_codon'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_gained'::text)) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text)) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'frame_restoring_variant'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_2_frameshift variant'::text)) OR ((cvterm.name)::text = 'inframe_codon_gain'::text)) OR ((cvterm.name)::text = 'inframe_codon_loss'::text)) OR ((cvterm.name)::text = 'exon_variant'::text));
- --
- -- Name: exonic_splice_enhancer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW exonic_splice_enhancer AS
- SELECT feature.feature_id AS exonic_splice_enhancer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'exonic_splice_enhancer'::text);
- --
- -- Name: experimental_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW experimental_feature AS
- SELECT feature.feature_id AS experimental_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'match_part'::text) OR ((cvterm.name)::text = 'assembly_component'::text)) OR ((cvterm.name)::text = 'conserved_region'::text)) OR ((cvterm.name)::text = 'match'::text)) OR ((cvterm.name)::text = 'remark'::text)) OR ((cvterm.name)::text = 'reading_frame'::text)) OR ((cvterm.name)::text = 'consensus_region'::text)) OR ((cvterm.name)::text = 'low_complexity_region'::text)) OR ((cvterm.name)::text = 'assembly'::text)) OR ((cvterm.name)::text = 'transcribed_fragment'::text)) OR ((cvterm.name)::text = 'transcribed_cluster'::text)) OR ((cvterm.name)::text = 'high_identity_region'::text)) OR ((cvterm.name)::text = 'mathematically_defined_repeat'::text)) OR ((cvterm.name)::text = 'experimentally_defined_binding_region'::text)) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'read'::text)) OR ((cvterm.name)::text = 'restriction_fragment'::text)) OR ((cvterm.name)::text = 'golden_path_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_fragment'::text)) OR ((cvterm.name)::text = 'gap'::text)) OR ((cvterm.name)::text = 'sonicate_fragment'::text)) OR ((cvterm.name)::text = 'paired_end_fragment'::text)) OR ((cvterm.name)::text = 'read_pair'::text)) OR ((cvterm.name)::text = 'contig_read'::text)) OR ((cvterm.name)::text = 'BAC_end'::text)) OR ((cvterm.name)::text = 'dye_terminator_read'::text)) OR ((cvterm.name)::text = 'pyrosequenced_read'::text)) OR ((cvterm.name)::text = 'ligation_based_read'::text)) OR ((cvterm.name)::text = 'polymerase_synthesis_read'::text)) OR ((cvterm.name)::text = 'PAC_end'::text)) OR ((cvterm.name)::text = 'YAC_end'::text)) OR ((cvterm.name)::text = 'clone_end'::text)) OR ((cvterm.name)::text = 'RFLP_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'coding_conserved_region'::text)) OR ((cvterm.name)::text = 'nc_conserved_region'::text)) OR ((cvterm.name)::text = 'RR_tract'::text)) OR ((cvterm.name)::text = 'homologous_region'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_I'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_II'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_III'::text)) OR ((cvterm.name)::text = 'X_element'::text)) OR ((cvterm.name)::text = 'U_box'::text)) OR ((cvterm.name)::text = 'regional_centromere_central_core'::text)) OR ((cvterm.name)::text = 'syntenic_region'::text)) OR ((cvterm.name)::text = 'paralogous_region'::text)) OR ((cvterm.name)::text = 'orthologous_region'::text)) OR ((cvterm.name)::text = 'nucleotide_match'::text)) OR ((cvterm.name)::text = 'protein_match'::text)) OR ((cvterm.name)::text = 'expressed_sequence_match'::text)) OR ((cvterm.name)::text = 'cross_genome_match'::text)) OR ((cvterm.name)::text = 'translated_nucleotide_match'::text)) OR ((cvterm.name)::text = 'primer_match'::text)) OR ((cvterm.name)::text = 'EST_match'::text)) OR ((cvterm.name)::text = 'cDNA_match'::text)) OR ((cvterm.name)::text = 'UST_match'::text)) OR ((cvterm.name)::text = 'RST_match'::text)) OR ((cvterm.name)::text = 'sequence_difference'::text)) OR ((cvterm.name)::text = 'experimental_result_region'::text)) OR ((cvterm.name)::text = 'polypeptide_sequencing_information'::text)) OR ((cvterm.name)::text = 'possible_base_call_error'::text)) OR ((cvterm.name)::text = 'possible_assembly_error'::text)) OR ((cvterm.name)::text = 'assembly_error_correction'::text)) OR ((cvterm.name)::text = 'base_call_error_correction'::text)) OR ((cvterm.name)::text = 'overlapping_feature_set'::text)) OR ((cvterm.name)::text = 'no_output'::text)) OR ((cvterm.name)::text = 'overlapping_EST_set'::text)) OR ((cvterm.name)::text = 'non_adjacent_residues'::text)) OR ((cvterm.name)::text = 'non_terminal_residue'::text)) OR ((cvterm.name)::text = 'sequence_conflict'::text)) OR ((cvterm.name)::text = 'sequence_uncertainty'::text)) OR ((cvterm.name)::text = 'contig_collection'::text)) OR ((cvterm.name)::text = 'ORF'::text)) OR ((cvterm.name)::text = 'blocked_reading_frame'::text)) OR ((cvterm.name)::text = 'mini_gene'::text)) OR ((cvterm.name)::text = 'rescue_mini_gene'::text)) OR ((cvterm.name)::text = 'consensus_mRNA'::text)) OR ((cvterm.name)::text = 'sequence_assembly'::text)) OR ((cvterm.name)::text = 'fragment_assembly'::text)) OR ((cvterm.name)::text = 'supercontig'::text)) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'tiling_path'::text)) OR ((cvterm.name)::text = 'virtual_sequence'::text)) OR ((cvterm.name)::text = 'golden_path'::text)) OR ((cvterm.name)::text = 'ultracontig'::text)) OR ((cvterm.name)::text = 'expressed_sequence_assembly'::text)) OR ((cvterm.name)::text = 'fingerprint_map'::text)) OR ((cvterm.name)::text = 'STS_map'::text)) OR ((cvterm.name)::text = 'RH_map'::text)) OR ((cvterm.name)::text = 'unigene_cluster'::text)) OR ((cvterm.name)::text = 'CHiP_seq_region'::text)) OR ((cvterm.name)::text = 'experimental_feature'::text));
- --
- -- Name: experimental_feature_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW experimental_feature_attribute AS
- SELECT feature.feature_id AS experimental_feature_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'score'::text) OR ((cvterm.name)::text = 'quality_value'::text)) OR ((cvterm.name)::text = 'experimental_feature_attribute'::text));
- --
- -- Name: experimental_result_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW experimental_result_region AS
- SELECT feature.feature_id AS experimental_result_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'overlapping_feature_set'::text) OR ((cvterm.name)::text = 'no_output'::text)) OR ((cvterm.name)::text = 'overlapping_EST_set'::text)) OR ((cvterm.name)::text = 'experimental_result_region'::text));
- --
- -- Name: experimentally_defined_binding_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW experimentally_defined_binding_region AS
- SELECT feature.feature_id AS experimentally_defined_binding_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'CHiP_seq_region'::text) OR ((cvterm.name)::text = 'experimentally_defined_binding_region'::text));
- --
- -- Name: experimentally_determined; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW experimentally_determined AS
- SELECT feature.feature_id AS experimentally_determined_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'experimentally_determined'::text);
- --
- -- Name: expressed_sequence_assembly; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW expressed_sequence_assembly AS
- SELECT feature.feature_id AS expressed_sequence_assembly_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'expressed_sequence_assembly'::text);
- --
- -- Name: expressed_sequence_match; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW expressed_sequence_match AS
- SELECT feature.feature_id AS expressed_sequence_match_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'EST_match'::text) OR ((cvterm.name)::text = 'cDNA_match'::text)) OR ((cvterm.name)::text = 'UST_match'::text)) OR ((cvterm.name)::text = 'RST_match'::text)) OR ((cvterm.name)::text = 'expressed_sequence_match'::text));
- --
- -- Name: external_transcribed_spacer_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW external_transcribed_spacer_region AS
- SELECT feature.feature_id AS external_transcribed_spacer_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'external_transcribed_spacer_region'::text);
- --
- -- Name: extrachromosomal_mobile_genetic_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW extrachromosomal_mobile_genetic_element AS
- SELECT feature.feature_id AS extrachromosomal_mobile_genetic_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((cvterm.name)::text = 'natural_transposable_element'::text) OR ((cvterm.name)::text = 'viral_sequence'::text)) OR ((cvterm.name)::text = 'natural_plasmid'::text)) OR ((cvterm.name)::text = 'phage_sequence'::text)) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'extrachromosomal_mobile_genetic_element'::text));
- --
- -- Name: extramembrane_polypeptide_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW extramembrane_polypeptide_region AS
- SELECT feature.feature_id AS extramembrane_polypeptide_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'cytoplasmic_polypeptide_region'::text) OR ((cvterm.name)::text = 'non_cytoplasmic_polypeptide_region'::text)) OR ((cvterm.name)::text = 'extramembrane_polypeptide_region'::text));
- --
- -- Name: feature_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW feature_attribute AS
- SELECT feature.feature_id AS feature_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'transcript_attribute'::text) OR ((cvterm.name)::text = 'bound_by_factor'::text)) OR ((cvterm.name)::text = 'flanked'::text)) OR ((cvterm.name)::text = 'gene_attribute'::text)) OR ((cvterm.name)::text = 'retrotransposed'::text)) OR ((cvterm.name)::text = 'transgenic'::text)) OR ((cvterm.name)::text = 'natural'::text)) OR ((cvterm.name)::text = 'engineered'::text)) OR ((cvterm.name)::text = 'foreign'::text)) OR ((cvterm.name)::text = 'fusion'::text)) OR ((cvterm.name)::text = 'rescue'::text)) OR ((cvterm.name)::text = 'wild_type'::text)) OR ((cvterm.name)::text = 'conserved'::text)) OR ((cvterm.name)::text = 'status'::text)) OR ((cvterm.name)::text = 'intermediate'::text)) OR ((cvterm.name)::text = 'recombinationally_rearranged'::text)) OR ((cvterm.name)::text = 'cryptic'::text)) OR ((cvterm.name)::text = 'strand_attribute'::text)) OR ((cvterm.name)::text = 'direction_attribute'::text)) OR ((cvterm.name)::text = 'enzymatic'::text)) OR ((cvterm.name)::text = 'mobile'::text)) OR ((cvterm.name)::text = 'alteration_attribute'::text)) OR ((cvterm.name)::text = 'experimental_feature_attribute'::text)) OR ((cvterm.name)::text = 'edited'::text)) OR ((cvterm.name)::text = 'capped'::text)) OR ((cvterm.name)::text = 'mRNA_attribute'::text)) OR ((cvterm.name)::text = 'trans_spliced'::text)) OR ((cvterm.name)::text = 'alternatively_spliced'::text)) OR ((cvterm.name)::text = 'monocistronic'::text)) OR ((cvterm.name)::text = 'polycistronic'::text)) OR ((cvterm.name)::text = 'polyadenylated'::text)) OR ((cvterm.name)::text = 'exemplar'::text)) OR ((cvterm.name)::text = 'frameshift'::text)) OR ((cvterm.name)::text = 'recoded'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_framshift'::text)) OR ((cvterm.name)::text = 'codon_redefined'::text)) OR ((cvterm.name)::text = 'recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'minus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'plus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'dicistronic'::text)) OR ((cvterm.name)::text = 'bound_by_protein'::text)) OR ((cvterm.name)::text = 'bound_by_nucleic_acid'::text)) OR ((cvterm.name)::text = 'floxed'::text)) OR ((cvterm.name)::text = 'FRT_flanked'::text)) OR ((cvterm.name)::text = 'protein_coding'::text)) OR ((cvterm.name)::text = 'non_protein_coding'::text)) OR ((cvterm.name)::text = 'gene_to_gene_feature'::text)) OR ((cvterm.name)::text = 'gene_array_member'::text)) OR ((cvterm.name)::text = 'regulated'::text)) OR ((cvterm.name)::text = 'epigenetically_modified'::text)) OR ((cvterm.name)::text = 'encodes_alternately_spliced_transcripts'::text)) OR ((cvterm.name)::text = 'encodes_alternate_transcription_start_sites'::text)) OR ((cvterm.name)::text = 'intein_containing'::text)) OR ((cvterm.name)::text = 'miRNA_encoding'::text)) OR ((cvterm.name)::text = 'rRNA_encoding'::text)) OR ((cvterm.name)::text = 'scRNA_encoding'::text)) OR ((cvterm.name)::text = 'snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'snRNA_encoding'::text)) OR ((cvterm.name)::text = 'SRP_RNA_encoding'::text)) OR ((cvterm.name)::text = 'stRNA_encoding'::text)) OR ((cvterm.name)::text = 'tmRNA_encoding'::text)) OR ((cvterm.name)::text = 'tRNA_encoding'::text)) OR ((cvterm.name)::text = 'gRNA_encoding'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'overlapping'::text)) OR ((cvterm.name)::text = 'inside_intron'::text)) OR ((cvterm.name)::text = 'five_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'five_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'antisense'::text)) OR ((cvterm.name)::text = 'inside_intron_antiparallel'::text)) OR ((cvterm.name)::text = 'inside_intron_parallel'::text)) OR ((cvterm.name)::text = 'operon_member'::text)) OR ((cvterm.name)::text = 'gene_cassette_member'::text)) OR ((cvterm.name)::text = 'gene_subarray_member'::text)) OR ((cvterm.name)::text = 'member_of_regulon'::text)) OR ((cvterm.name)::text = 'cassette_array_member'::text)) OR ((cvterm.name)::text = 'transcriptionally_regulated'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated'::text)) OR ((cvterm.name)::text = 'translationally_regulated'::text)) OR ((cvterm.name)::text = 'imprinted'::text)) OR ((cvterm.name)::text = 'transcriptionally_constitutive'::text)) OR ((cvterm.name)::text = 'transcriptionally_induced'::text)) OR ((cvterm.name)::text = 'transcriptionally_repressed'::text)) OR ((cvterm.name)::text = 'autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'silenced'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_stability'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_modification'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'imprinted'::text)) OR ((cvterm.name)::text = 'allelically_excluded'::text)) OR ((cvterm.name)::text = 'rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'encodes_1_polypeptide'::text)) OR ((cvterm.name)::text = 'encodes_greater_than_1_polypeptide'::text)) OR ((cvterm.name)::text = 'encodes_disjoint_polypeptides'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides'::text)) OR ((cvterm.name)::text = 'encodes_different_polypeptides_different_stop'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides_different_start'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_polypeptides_different_start_and_stop'::text)) OR ((cvterm.name)::text = 'homologous'::text)) OR ((cvterm.name)::text = 'syntenic'::text)) OR ((cvterm.name)::text = 'orthologous'::text)) OR ((cvterm.name)::text = 'paralogous'::text)) OR ((cvterm.name)::text = 'fragmentary'::text)) OR ((cvterm.name)::text = 'predicted'::text)) OR ((cvterm.name)::text = 'validated'::text)) OR ((cvterm.name)::text = 'invalidated'::text)) OR ((cvterm.name)::text = 'independently_known'::text)) OR ((cvterm.name)::text = 'consensus'::text)) OR ((cvterm.name)::text = 'low_complexity'::text)) OR ((cvterm.name)::text = 'whole_genome_sequence_status'::text)) OR ((cvterm.name)::text = 'supported_by_sequence_similarity'::text)) OR ((cvterm.name)::text = 'orphan'::text)) OR ((cvterm.name)::text = 'predicted_by_ab_initio_computation'::text)) OR ((cvterm.name)::text = 'supported_by_domain_match'::text)) OR ((cvterm.name)::text = 'supported_by_EST_or_cDNA'::text)) OR ((cvterm.name)::text = 'experimentally_determined'::text)) OR ((cvterm.name)::text = 'invalidated_by_chimeric_cDNA'::text)) OR ((cvterm.name)::text = 'invalidated_by_genomic_contamination'::text)) OR ((cvterm.name)::text = 'invalidated_by_genomic_polyA_primed_cDNA'::text)) OR ((cvterm.name)::text = 'invalidated_by_partial_processing'::text)) OR ((cvterm.name)::text = 'standard_draft'::text)) OR ((cvterm.name)::text = 'high_quality_draft'::text)) OR ((cvterm.name)::text = 'improved_high_quality_draft'::text)) OR ((cvterm.name)::text = 'annotation_directed_improved_draft'::text)) OR ((cvterm.name)::text = 'noncontiguous_finished'::text)) OR ((cvterm.name)::text = 'finished_genome'::text)) OR ((cvterm.name)::text = 'single'::text)) OR ((cvterm.name)::text = 'double'::text)) OR ((cvterm.name)::text = 'forward'::text)) OR ((cvterm.name)::text = 'reverse'::text)) OR ((cvterm.name)::text = 'ribozymic'::text)) OR ((cvterm.name)::text = 'chromosomal_variation_attribute'::text)) OR ((cvterm.name)::text = 'insertion_attribute'::text)) OR ((cvterm.name)::text = 'inversion_attribute'::text)) OR ((cvterm.name)::text = 'translocaton_attribute'::text)) OR ((cvterm.name)::text = 'duplication_attribute'::text)) OR ((cvterm.name)::text = 'intrachromosomal'::text)) OR ((cvterm.name)::text = 'interchromosomal'::text)) OR ((cvterm.name)::text = 'tandem'::text)) OR ((cvterm.name)::text = 'direct'::text)) OR ((cvterm.name)::text = 'inverted'::text)) OR ((cvterm.name)::text = 'pericentric'::text)) OR ((cvterm.name)::text = 'paracentric'::text)) OR ((cvterm.name)::text = 'reciprocal'::text)) OR ((cvterm.name)::text = 'insertional'::text)) OR ((cvterm.name)::text = 'free'::text)) OR ((cvterm.name)::text = 'score'::text)) OR ((cvterm.name)::text = 'quality_value'::text)) OR ((cvterm.name)::text = 'feature_attribute'::text));
- --
- -- Name: fingerprint_map; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW fingerprint_map AS
- SELECT feature.feature_id AS fingerprint_map_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'fingerprint_map'::text);
- --
- -- Name: finished_genome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW finished_genome AS
- SELECT feature.feature_id AS finished_genome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'finished_genome'::text);
- --
- -- Name: five_aminomethyl_two_thiouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_aminomethyl_two_thiouridine AS
- SELECT feature.feature_id AS five_aminomethyl_two_thiouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_aminomethyl_two_thiouridine'::text);
- --
- -- Name: five_carbamoylmethyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_carbamoylmethyluridine AS
- SELECT feature.feature_id AS five_carbamoylmethyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_carbamoylmethyluridine'::text);
- --
- -- Name: five_carboxyhydroxymethyl_uridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_carboxyhydroxymethyl_uridine AS
- SELECT feature.feature_id AS five_carboxyhydroxymethyl_uridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine'::text);
- --
- -- Name: five_carboxyhydroxymethyl_uridine_methyl_ester; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_carboxyhydroxymethyl_uridine_methyl_ester AS
- SELECT feature.feature_id AS five_carboxyhydroxymethyl_uridine_methyl_ester_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine_methyl_ester'::text);
- --
- -- Name: five_carboxymethylaminomethyl_two_prime_o_methyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_carboxymethylaminomethyl_two_prime_o_methyluridine AS
- SELECT feature.feature_id AS five_carboxymethylaminomethyl_two_prime_o_methyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine'::text);
- --
- -- Name: five_carboxymethylaminomethyl_two_thiouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_carboxymethylaminomethyl_two_thiouridine AS
- SELECT feature.feature_id AS five_carboxymethylaminomethyl_two_thiouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_thiouridine'::text);
- --
- -- Name: five_carboxymethylaminomethyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_carboxymethylaminomethyluridine AS
- SELECT feature.feature_id AS five_carboxymethylaminomethyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_carboxymethylaminomethyluridine'::text);
- --
- -- Name: five_carboxymethyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_carboxymethyluridine AS
- SELECT feature.feature_id AS five_carboxymethyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_carboxymethyluridine'::text);
- --
- -- Name: five_cm_2_prime_o_methu; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_cm_2_prime_o_methu AS
- SELECT feature.feature_id AS five_cm_2_prime_o_methu_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_carbamoylmethyl_two_prime_O_methyluridine'::text);
- --
- -- Name: five_formyl_two_prime_o_methylcytidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_formyl_two_prime_o_methylcytidine AS
- SELECT feature.feature_id AS five_formyl_two_prime_o_methylcytidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_formyl_two_prime_O_methylcytidine'::text);
- --
- -- Name: five_formylcytidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_formylcytidine AS
- SELECT feature.feature_id AS five_formylcytidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_formylcytidine'::text);
- --
- -- Name: five_hydroxymethylcytidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_hydroxymethylcytidine AS
- SELECT feature.feature_id AS five_hydroxymethylcytidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_hydroxymethylcytidine'::text);
- --
- -- Name: five_hydroxyuridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_hydroxyuridine AS
- SELECT feature.feature_id AS five_hydroxyuridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_hydroxyuridine'::text);
- --
- -- Name: five_isopentenylaminomethyl_two_prime_o_methyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_isopentenylaminomethyl_two_prime_o_methyluridine AS
- SELECT feature.feature_id AS five_isopentenylaminomethyl_two_prime_o_methyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_prime_O_methyluridine'::text);
- --
- -- Name: five_isopentenylaminomethyl_two_thiouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_isopentenylaminomethyl_two_thiouridine AS
- SELECT feature.feature_id AS five_isopentenylaminomethyl_two_thiouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_thiouridine'::text);
- --
- -- Name: five_isopentenylaminomethyl_uridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_isopentenylaminomethyl_uridine AS
- SELECT feature.feature_id AS five_isopentenylaminomethyl_uridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_isopentenylaminomethyl_uridine'::text);
- --
- -- Name: five_mam_2_thiouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_mam_2_thiouridine AS
- SELECT feature.feature_id AS five_mam_2_thiouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_methylaminomethyl_two_thiouridine'::text);
- --
- -- Name: five_mcm_2_thiouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_mcm_2_thiouridine AS
- SELECT feature.feature_id AS five_mcm_2_thiouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_thiouridine'::text);
- --
- -- Name: five_methoxycarbonylmethyl_two_prime_o_methyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_methoxycarbonylmethyl_two_prime_o_methyluridine AS
- SELECT feature.feature_id AS five_methoxycarbonylmethyl_two_prime_o_methyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine'::text);
- --
- -- Name: five_methoxycarbonylmethyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_methoxycarbonylmethyluridine AS
- SELECT feature.feature_id AS five_methoxycarbonylmethyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_methoxycarbonylmethyluridine'::text);
- --
- -- Name: five_methoxyuridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_methoxyuridine AS
- SELECT feature.feature_id AS five_methoxyuridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_methoxyuridine'::text);
- --
- -- Name: five_methyl_2_thiouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_methyl_2_thiouridine AS
- SELECT feature.feature_id AS five_methyl_2_thiouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_methyl_2_thiouridine'::text);
- --
- -- Name: five_methylaminomethyl_two_selenouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_methylaminomethyl_two_selenouridine AS
- SELECT feature.feature_id AS five_methylaminomethyl_two_selenouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_methylaminomethyl_two_selenouridine'::text);
- --
- -- Name: five_methylaminomethyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_methylaminomethyluridine AS
- SELECT feature.feature_id AS five_methylaminomethyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_methylaminomethyluridine'::text);
- --
- -- Name: five_methylcytidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_methylcytidine AS
- SELECT feature.feature_id AS five_methylcytidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_methylcytidine'::text);
- --
- -- Name: five_methyldihydrouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_methyldihydrouridine AS
- SELECT feature.feature_id AS five_methyldihydrouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_methyldihydrouridine'::text);
- --
- -- Name: five_methyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_methyluridine AS
- SELECT feature.feature_id AS five_methyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_methyluridine'::text);
- --
- -- Name: five_prime_cis_splice_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_cis_splice_site AS
- SELECT feature.feature_id AS five_prime_cis_splice_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'canonical_five_prime_splice_site'::text) OR ((cvterm.name)::text = 'non_canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'five_prime_cis_splice_site'::text));
- --
- -- Name: five_prime_clip; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_clip AS
- SELECT feature.feature_id AS five_prime_clip_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_clip'::text);
- --
- -- Name: five_prime_coding_exon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_coding_exon AS
- SELECT feature.feature_id AS five_prime_coding_exon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_coding_exon'::text);
- --
- -- Name: five_prime_coding_exon_coding_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_coding_exon_coding_region AS
- SELECT feature.feature_id AS five_prime_coding_exon_coding_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_coding_exon_coding_region'::text);
- --
- -- Name: five_prime_coding_exon_noncoding_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_coding_exon_noncoding_region AS
- SELECT feature.feature_id AS five_prime_coding_exon_noncoding_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_coding_exon_noncoding_region'::text);
- --
- -- Name: five_prime_d_heptamer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_d_heptamer AS
- SELECT feature.feature_id AS five_prime_d_heptamer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_D_heptamer'::text);
- --
- -- Name: five_prime_d_nonamer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_d_nonamer AS
- SELECT feature.feature_id AS five_prime_d_nonamer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_D_nonamer'::text);
- --
- -- Name: five_prime_d_recombination_signal_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_d_recombination_signal_sequence AS
- SELECT feature.feature_id AS five_prime_d_recombination_signal_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text);
- --
- -- Name: five_prime_d_spacer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_d_spacer AS
- SELECT feature.feature_id AS five_prime_d_spacer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_D_spacer'::text);
- --
- -- Name: five_prime_est; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_est AS
- SELECT feature.feature_id AS five_prime_est_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_EST'::text);
- --
- -- Name: five_prime_five_prime_overlap; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_five_prime_overlap AS
- SELECT feature.feature_id AS five_prime_five_prime_overlap_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_five_prime_overlap'::text);
- --
- -- Name: five_prime_flanking_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_flanking_region AS
- SELECT feature.feature_id AS five_prime_flanking_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_flanking_region'::text);
- --
- -- Name: five_prime_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_intron AS
- SELECT feature.feature_id AS five_prime_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_intron'::text);
- --
- -- Name: five_prime_ltr; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_ltr AS
- SELECT feature.feature_id AS five_prime_ltr_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_LTR'::text);
- --
- -- Name: five_prime_ltr_component; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_ltr_component AS
- SELECT feature.feature_id AS five_prime_ltr_component_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'R_five_prime_LTR_region'::text) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'five_prime_LTR_component'::text));
- --
- -- Name: five_prime_noncoding_exon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_noncoding_exon AS
- SELECT feature.feature_id AS five_prime_noncoding_exon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_noncoding_exon'::text);
- --
- -- Name: five_prime_open_reading_frame; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_open_reading_frame AS
- SELECT feature.feature_id AS five_prime_open_reading_frame_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_open_reading_frame'::text);
- --
- -- Name: five_prime_recoding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_recoding_site AS
- SELECT feature.feature_id AS five_prime_recoding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_recoding_site'::text);
- --
- -- Name: five_prime_restriction_enzyme_junction; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_restriction_enzyme_junction AS
- SELECT feature.feature_id AS five_prime_restriction_enzyme_junction_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_restriction_enzyme_junction'::text);
- --
- -- Name: five_prime_rst; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_rst AS
- SELECT feature.feature_id AS five_prime_rst_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_RST'::text);
- --
- -- Name: five_prime_terminal_inverted_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_terminal_inverted_repeat AS
- SELECT feature.feature_id AS five_prime_terminal_inverted_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_terminal_inverted_repeat'::text);
- --
- -- Name: five_prime_three_prime_overlap; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_three_prime_overlap AS
- SELECT feature.feature_id AS five_prime_three_prime_overlap_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_three_prime_overlap'::text);
- --
- -- Name: five_prime_ust; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_ust AS
- SELECT feature.feature_id AS five_prime_ust_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_UST'::text);
- --
- -- Name: five_prime_utr; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_utr AS
- SELECT feature.feature_id AS five_prime_utr_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_UTR'::text);
- --
- -- Name: five_prime_utr_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_utr_intron AS
- SELECT feature.feature_id AS five_prime_utr_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_prime_UTR_intron'::text);
- --
- -- Name: five_prime_utr_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_prime_utr_variant AS
- SELECT feature.feature_id AS five_prime_utr_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = '5_prime_UTR_variant'::text);
- --
- -- Name: five_taurinomethyl_two_thiouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_taurinomethyl_two_thiouridine AS
- SELECT feature.feature_id AS five_taurinomethyl_two_thiouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_taurinomethyl_two_thiouridine'::text);
- --
- -- Name: five_taurinomethyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_taurinomethyluridine AS
- SELECT feature.feature_id AS five_taurinomethyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_taurinomethyluridine'::text);
- --
- -- Name: five_two_prime_o_dimethylcytidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_two_prime_o_dimethylcytidine AS
- SELECT feature.feature_id AS five_two_prime_o_dimethylcytidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_two_prime_O_dimethylcytidine'::text);
- --
- -- Name: five_two_prime_o_dimethyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW five_two_prime_o_dimethyluridine AS
- SELECT feature.feature_id AS five_two_prime_o_dimethyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'five_two_prime_O_dimethyluridine'::text);
- --
- -- Name: fivehundred_b_downstream_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW fivehundred_b_downstream_variant AS
- SELECT feature.feature_id AS fivehundred_b_downstream_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = '500B_downstream_variant'::text);
- --
- -- Name: fivekb_downstream_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW fivekb_downstream_variant AS
- SELECT feature.feature_id AS fivekb_downstream_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = '500B_downstream_variant'::text) OR ((cvterm.name)::text = '5KB_downstream_variant'::text));
- --
- -- Name: fivekb_upstream_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW fivekb_upstream_variant AS
- SELECT feature.feature_id AS fivekb_upstream_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = '2KB_upstream_variant'::text) OR ((cvterm.name)::text = '5KB_upstream_variant'::text));
- --
- -- Name: fixed_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW fixed_variant AS
- SELECT feature.feature_id AS fixed_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'fixed_variant'::text);
- --
- -- Name: flanked; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW flanked AS
- SELECT feature.feature_id AS flanked_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'floxed'::text) OR ((cvterm.name)::text = 'FRT_flanked'::text)) OR ((cvterm.name)::text = 'flanked'::text));
- --
- -- Name: flanking_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW flanking_region AS
- SELECT feature.feature_id AS flanking_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'transposable_element_flanking_region'::text) OR ((cvterm.name)::text = 'five_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'three_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'flanking_region'::text));
- --
- -- Name: flanking_three_prime_quadruplet_recoding_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW flanking_three_prime_quadruplet_recoding_signal AS
- SELECT feature.feature_id AS flanking_three_prime_quadruplet_recoding_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'flanking_three_prime_quadruplet_recoding_signal'::text);
- --
- -- Name: floxed; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW floxed AS
- SELECT feature.feature_id AS floxed_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'floxed'::text);
- --
- -- Name: floxed_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW floxed_gene AS
- SELECT feature.feature_id AS floxed_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'floxed_gene'::text);
- --
- -- Name: foldback_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW foldback_element AS
- SELECT feature.feature_id AS foldback_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'foldback_element'::text);
- --
- -- Name: foreign_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW foreign_gene AS
- SELECT feature.feature_id AS foreign_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'engineered_foreign_gene'::text) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'foreign_gene'::text));
- --
- -- Name: foreign_transposable_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW foreign_transposable_element AS
- SELECT feature.feature_id AS foreign_transposable_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'engineered_foreign_transposable_element'::text) OR ((cvterm.name)::text = 'foreign_transposable_element'::text));
- --
- -- Name: forward; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW forward AS
- SELECT feature.feature_id AS forward_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'forward'::text);
- --
- -- Name: forward_primer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW forward_primer AS
- SELECT feature.feature_id AS forward_primer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'forward_primer'::text);
- --
- -- Name: fosmid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW fosmid AS
- SELECT feature.feature_id AS fosmid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'fosmid'::text);
- --
- -- Name: four_bp_start_codon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW four_bp_start_codon AS
- SELECT feature.feature_id AS four_bp_start_codon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'four_bp_start_codon'::text);
- --
- -- Name: four_demethylwyosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW four_demethylwyosine AS
- SELECT feature.feature_id AS four_demethylwyosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'four_demethylwyosine'::text);
- --
- -- Name: four_thiouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW four_thiouridine AS
- SELECT feature.feature_id AS four_thiouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'four_thiouridine'::text);
- --
- -- Name: fragment_assembly; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW fragment_assembly AS
- SELECT feature.feature_id AS fragment_assembly_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'fingerprint_map'::text) OR ((cvterm.name)::text = 'STS_map'::text)) OR ((cvterm.name)::text = 'RH_map'::text)) OR ((cvterm.name)::text = 'fragment_assembly'::text));
- --
- -- Name: fragmentary; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW fragmentary AS
- SELECT feature.feature_id AS fragmentary_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'fragmentary'::text);
- --
- -- Name: frame_restoring_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW frame_restoring_variant AS
- SELECT feature.feature_id AS frame_restoring_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'frame_restoring_variant'::text);
- --
- -- Name: frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW frameshift AS
- SELECT feature.feature_id AS frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'minus_1_frameshift'::text) OR ((cvterm.name)::text = 'minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_framshift'::text)) OR ((cvterm.name)::text = 'frameshift'::text));
- --
- -- Name: frameshift_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW frameshift_variant AS
- SELECT feature.feature_id AS frameshift_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'frame_restoring_variant'::text) OR ((cvterm.name)::text = 'minus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_2_frameshift variant'::text)) OR ((cvterm.name)::text = 'frameshift_variant'::text));
- --
- -- Name: free; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW free AS
- SELECT feature.feature_id AS free_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'free'::text);
- --
- -- Name: free_chromosome_arm; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW free_chromosome_arm AS
- SELECT feature.feature_id AS free_chromosome_arm_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'free_chromosome_arm'::text);
- --
- -- Name: free_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW free_duplication AS
- SELECT feature.feature_id AS free_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'free_ring_duplication'::text) OR ((cvterm.name)::text = 'free_duplication'::text));
- --
- -- Name: free_ring_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW free_ring_duplication AS
- SELECT feature.feature_id AS free_ring_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'free_ring_duplication'::text);
- --
- -- Name: frt_flanked; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW frt_flanked AS
- SELECT feature.feature_id AS frt_flanked_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'FRT_flanked'::text);
- --
- -- Name: frt_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW frt_site AS
- SELECT feature.feature_id AS frt_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'FRT_site'::text);
- --
- -- Name: functional_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW functional_variant AS
- SELECT feature.feature_id AS functional_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((cvterm.name)::text = 'transcript_function_variant'::text) OR ((cvterm.name)::text = 'translational_product_function_variant'::text)) OR ((cvterm.name)::text = 'level_of_transcript_variant'::text)) OR ((cvterm.name)::text = 'transcript_processing_variant'::text)) OR ((cvterm.name)::text = 'transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'transcription_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcript_level_variant'::text)) OR ((cvterm.name)::text = 'increased_transcript_level_variant'::text)) OR ((cvterm.name)::text = 'editing_variant'::text)) OR ((cvterm.name)::text = 'polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'increased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'decreased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'increased_transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'rate_of_transcription_variant'::text)) OR ((cvterm.name)::text = 'increased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'translational_product_level_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_function_variant'::text)) OR ((cvterm.name)::text = 'decreased_translational_product_level'::text)) OR ((cvterm.name)::text = 'increased_translational_product_level'::text)) OR ((cvterm.name)::text = 'polypeptide_gain_of_function_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_localization_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_loss_of_function_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_post_translational_processing_variant'::text)) OR ((cvterm.name)::text = 'inactive_ligand_binding_site'::text)) OR ((cvterm.name)::text = 'polypeptide_partial_loss_of_function'::text)) OR ((cvterm.name)::text = 'inactive_catalytic_site'::text)) OR ((cvterm.name)::text = 'functional_variant'::text));
- --
- -- Name: fusion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW fusion AS
- SELECT feature.feature_id AS fusion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'fusion'::text);
- --
- -- Name: fusion_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW fusion_gene AS
- SELECT feature.feature_id AS fusion_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'engineered_fusion_gene'::text) OR ((cvterm.name)::text = 'fusion_gene'::text));
- --
- -- Name: g_quartet; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW g_quartet AS
- SELECT feature.feature_id AS g_quartet_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'G_quartet'::text);
- --
- -- Name: g_to_a_transition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW g_to_a_transition AS
- SELECT feature.feature_id AS g_to_a_transition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'G_to_A_transition'::text);
- --
- -- Name: g_to_c_transversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW g_to_c_transversion AS
- SELECT feature.feature_id AS g_to_c_transversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'G_to_C_transversion'::text);
- --
- -- Name: g_to_t_transversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW g_to_t_transversion AS
- SELECT feature.feature_id AS g_to_t_transversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'G_to_T_transversion'::text);
- --
- -- Name: gaga_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gaga_motif AS
- SELECT feature.feature_id AS gaga_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'GAGA_motif'::text);
- --
- -- Name: galactosyl_queuosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW galactosyl_queuosine AS
- SELECT feature.feature_id AS galactosyl_queuosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'galactosyl_queuosine'::text);
- --
- -- Name: gamma_turn; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gamma_turn AS
- SELECT feature.feature_id AS gamma_turn_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'gamma_turn_classic'::text) OR ((cvterm.name)::text = 'gamma_turn_inverse'::text)) OR ((cvterm.name)::text = 'gamma_turn'::text));
- --
- -- Name: gamma_turn_classic; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gamma_turn_classic AS
- SELECT feature.feature_id AS gamma_turn_classic_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gamma_turn_classic'::text);
- --
- -- Name: gamma_turn_inverse; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gamma_turn_inverse AS
- SELECT feature.feature_id AS gamma_turn_inverse_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gamma_turn_inverse'::text);
- --
- -- Name: gap; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gap AS
- SELECT feature.feature_id AS gap_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gap'::text);
- --
- -- Name: gc_rich_promoter_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gc_rich_promoter_region AS
- SELECT feature.feature_id AS gc_rich_promoter_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'GC_rich_promoter_region'::text);
- --
- -- Name: gcvb_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gcvb_rna AS
- SELECT feature.feature_id AS gcvb_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'GcvB_RNA'::text);
- --
- -- Name: gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene AS
- SELECT feature.feature_id AS gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'nuclear_gene'::text) OR ((cvterm.name)::text = 'mt_gene'::text)) OR ((cvterm.name)::text = 'plastid_gene'::text)) OR ((cvterm.name)::text = 'nucleomorph_gene'::text)) OR ((cvterm.name)::text = 'plasmid_gene'::text)) OR ((cvterm.name)::text = 'proviral_gene'::text)) OR ((cvterm.name)::text = 'transposable_element_gene'::text)) OR ((cvterm.name)::text = 'silenced_gene'::text)) OR ((cvterm.name)::text = 'engineered_gene'::text)) OR ((cvterm.name)::text = 'foreign_gene'::text)) OR ((cvterm.name)::text = 'fusion_gene'::text)) OR ((cvterm.name)::text = 'recombinationally_rearranged_gene'::text)) OR ((cvterm.name)::text = 'gene_with_trans_spliced_transcript'::text)) OR ((cvterm.name)::text = 'gene_with_polycistronic_transcript'::text)) OR ((cvterm.name)::text = 'rescue_gene'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_gene'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated_gene'::text)) OR ((cvterm.name)::text = 'positively_autoregulated_gene'::text)) OR ((cvterm.name)::text = 'translationally_regulated_gene'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_gene'::text)) OR ((cvterm.name)::text = 'transgene'::text)) OR ((cvterm.name)::text = 'predicted_gene'::text)) OR ((cvterm.name)::text = 'protein_coding_gene'::text)) OR ((cvterm.name)::text = 'retrogene'::text)) OR ((cvterm.name)::text = 'ncRNA_gene'::text)) OR ((cvterm.name)::text = 'cryptic_gene'::text)) OR ((cvterm.name)::text = 'gene_with_non_canonical_start_codon'::text)) OR ((cvterm.name)::text = 'gene_cassette'::text)) OR ((cvterm.name)::text = 'kinetoplast_gene'::text)) OR ((cvterm.name)::text = 'maxicircle_gene'::text)) OR ((cvterm.name)::text = 'minicircle_gene'::text)) OR ((cvterm.name)::text = 'cryptogene'::text)) OR ((cvterm.name)::text = 'apicoplast_gene'::text)) OR ((cvterm.name)::text = 'ct_gene'::text)) OR ((cvterm.name)::text = 'chromoplast_gene'::text)) OR ((cvterm.name)::text = 'cyanelle_gene'::text)) OR ((cvterm.name)::text = 'leucoplast_gene'::text)) OR ((cvterm.name)::text = 'proplastid_gene'::text)) OR ((cvterm.name)::text = 'endogenous_retroviral_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_DNA_modification'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_fusion_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_fusion_gene'::text)) OR ((cvterm.name)::text = 'recombinationally_inverted_gene'::text)) OR ((cvterm.name)::text = 'recombinationally_rearranged_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'gene_with_dicistronic_transcript'::text)) OR ((cvterm.name)::text = 'gene_with_dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'gene_with_dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'wild_type_rescue_gene'::text)) OR ((cvterm.name)::text = 'gene_rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'paternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'allelically_excluded_gene'::text)) OR ((cvterm.name)::text = 'floxed_gene'::text)) OR ((cvterm.name)::text = 'gene_with_polyadenylated_mRNA'::text)) OR ((cvterm.name)::text = 'gene_with_mRNA_with_frameshift'::text)) OR ((cvterm.name)::text = 'gene_with_edited_transcript'::text)) OR ((cvterm.name)::text = 'gene_with_recoded_mRNA'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_read_through'::text)) OR ((cvterm.name)::text = 'gene_with_mRNA_recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'gene_with_transcript_with_translational_frameshift'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'gRNA_gene'::text)) OR ((cvterm.name)::text = 'miRNA_gene'::text)) OR ((cvterm.name)::text = 'scRNA_gene'::text)) OR ((cvterm.name)::text = 'snoRNA_gene'::text)) OR ((cvterm.name)::text = 'snRNA_gene'::text)) OR ((cvterm.name)::text = 'SRP_RNA_gene'::text)) OR ((cvterm.name)::text = 'stRNA_gene'::text)) OR ((cvterm.name)::text = 'tmRNA_gene'::text)) OR ((cvterm.name)::text = 'tRNA_gene'::text)) OR ((cvterm.name)::text = 'rRNA_gene'::text)) OR ((cvterm.name)::text = 'piRNA_gene'::text)) OR ((cvterm.name)::text = 'RNase_P_RNA_gene'::text)) OR ((cvterm.name)::text = 'RNase_MRP_RNA_gene'::text)) OR ((cvterm.name)::text = 'lincRNA_gene'::text)) OR ((cvterm.name)::text = 'telomerase_RNA_gene'::text)) OR ((cvterm.name)::text = 'cryptogene'::text)) OR ((cvterm.name)::text = 'gene_with_start_codon_CUG'::text)) OR ((cvterm.name)::text = 'gene'::text));
- --
- -- Name: gene_array; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_array AS
- SELECT feature.feature_id AS gene_array_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_array'::text);
- --
- -- Name: gene_array_member; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_array_member AS
- SELECT feature.feature_id AS gene_array_member_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'operon_member'::text) OR ((cvterm.name)::text = 'gene_cassette_member'::text)) OR ((cvterm.name)::text = 'gene_subarray_member'::text)) OR ((cvterm.name)::text = 'member_of_regulon'::text)) OR ((cvterm.name)::text = 'cassette_array_member'::text)) OR ((cvterm.name)::text = 'gene_array_member'::text));
- --
- -- Name: gene_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_attribute AS
- SELECT feature.feature_id AS gene_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'protein_coding'::text) OR ((cvterm.name)::text = 'non_protein_coding'::text)) OR ((cvterm.name)::text = 'gene_to_gene_feature'::text)) OR ((cvterm.name)::text = 'gene_array_member'::text)) OR ((cvterm.name)::text = 'regulated'::text)) OR ((cvterm.name)::text = 'epigenetically_modified'::text)) OR ((cvterm.name)::text = 'encodes_alternately_spliced_transcripts'::text)) OR ((cvterm.name)::text = 'encodes_alternate_transcription_start_sites'::text)) OR ((cvterm.name)::text = 'intein_containing'::text)) OR ((cvterm.name)::text = 'miRNA_encoding'::text)) OR ((cvterm.name)::text = 'rRNA_encoding'::text)) OR ((cvterm.name)::text = 'scRNA_encoding'::text)) OR ((cvterm.name)::text = 'snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'snRNA_encoding'::text)) OR ((cvterm.name)::text = 'SRP_RNA_encoding'::text)) OR ((cvterm.name)::text = 'stRNA_encoding'::text)) OR ((cvterm.name)::text = 'tmRNA_encoding'::text)) OR ((cvterm.name)::text = 'tRNA_encoding'::text)) OR ((cvterm.name)::text = 'gRNA_encoding'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'overlapping'::text)) OR ((cvterm.name)::text = 'inside_intron'::text)) OR ((cvterm.name)::text = 'five_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'five_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'antisense'::text)) OR ((cvterm.name)::text = 'inside_intron_antiparallel'::text)) OR ((cvterm.name)::text = 'inside_intron_parallel'::text)) OR ((cvterm.name)::text = 'operon_member'::text)) OR ((cvterm.name)::text = 'gene_cassette_member'::text)) OR ((cvterm.name)::text = 'gene_subarray_member'::text)) OR ((cvterm.name)::text = 'member_of_regulon'::text)) OR ((cvterm.name)::text = 'cassette_array_member'::text)) OR ((cvterm.name)::text = 'transcriptionally_regulated'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated'::text)) OR ((cvterm.name)::text = 'translationally_regulated'::text)) OR ((cvterm.name)::text = 'imprinted'::text)) OR ((cvterm.name)::text = 'transcriptionally_constitutive'::text)) OR ((cvterm.name)::text = 'transcriptionally_induced'::text)) OR ((cvterm.name)::text = 'transcriptionally_repressed'::text)) OR ((cvterm.name)::text = 'autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'silenced'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_stability'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_modification'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'imprinted'::text)) OR ((cvterm.name)::text = 'allelically_excluded'::text)) OR ((cvterm.name)::text = 'rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'encodes_1_polypeptide'::text)) OR ((cvterm.name)::text = 'encodes_greater_than_1_polypeptide'::text)) OR ((cvterm.name)::text = 'encodes_disjoint_polypeptides'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides'::text)) OR ((cvterm.name)::text = 'encodes_different_polypeptides_different_stop'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides_different_start'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_polypeptides_different_start_and_stop'::text)) OR ((cvterm.name)::text = 'gene_attribute'::text));
- --
- -- Name: gene_cassette; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_cassette AS
- SELECT feature.feature_id AS gene_cassette_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_cassette'::text);
- --
- -- Name: gene_cassette_array; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_cassette_array AS
- SELECT feature.feature_id AS gene_cassette_array_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_cassette_array'::text);
- --
- -- Name: gene_cassette_member; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_cassette_member AS
- SELECT feature.feature_id AS gene_cassette_member_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'cassette_array_member'::text) OR ((cvterm.name)::text = 'gene_cassette_member'::text));
- --
- -- Name: gene_component_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_component_region AS
- SELECT feature.feature_id AS gene_component_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'non_transcribed_region'::text) OR ((cvterm.name)::text = 'gene_fragment'::text)) OR ((cvterm.name)::text = 'TSS_region'::text)) OR ((cvterm.name)::text = 'gene_segment'::text)) OR ((cvterm.name)::text = 'pseudogenic_gene_segment'::text)) OR ((cvterm.name)::text = 'gene_component_region'::text));
- --
- -- Name: gene_fragment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_fragment AS
- SELECT feature.feature_id AS gene_fragment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_fragment'::text);
- --
- -- Name: gene_fusion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_fusion AS
- SELECT feature.feature_id AS gene_fusion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_fusion'::text);
- --
- -- Name: gene_group; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_group AS
- SELECT feature.feature_id AS gene_group_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'operon'::text) OR ((cvterm.name)::text = 'mating_type_region'::text)) OR ((cvterm.name)::text = 'gene_array'::text)) OR ((cvterm.name)::text = 'gene_subarray'::text)) OR ((cvterm.name)::text = 'gene_cassette_array'::text)) OR ((cvterm.name)::text = 'regulon'::text)) OR ((cvterm.name)::text = 'gene_group'::text));
- --
- -- Name: gene_group_regulatory_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_group_regulatory_region AS
- SELECT feature.feature_id AS gene_group_regulatory_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'operator'::text) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'gene_group_regulatory_region'::text));
- --
- -- Name: gene_member_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_member_region AS
- SELECT feature.feature_id AS gene_member_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'transcript'::text) OR ((cvterm.name)::text = 'regulatory_region'::text)) OR ((cvterm.name)::text = 'polycistronic_transcript'::text)) OR ((cvterm.name)::text = 'transcript_with_translational_frameshift'::text)) OR ((cvterm.name)::text = 'primary_transcript'::text)) OR ((cvterm.name)::text = 'mature_transcript'::text)) OR ((cvterm.name)::text = 'transcript_bound_by_nucleic_acid'::text)) OR ((cvterm.name)::text = 'transcript_bound_by_protein'::text)) OR ((cvterm.name)::text = 'enzymatic_RNA'::text)) OR ((cvterm.name)::text = 'trans_spliced_transcript'::text)) OR ((cvterm.name)::text = 'monocistronic_transcript'::text)) OR ((cvterm.name)::text = 'aberrant_processed_transcript'::text)) OR ((cvterm.name)::text = 'edited_transcript'::text)) OR ((cvterm.name)::text = 'processed_transcript'::text)) OR ((cvterm.name)::text = 'alternatively_spliced_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'protein_coding_primary_transcript'::text)) OR ((cvterm.name)::text = 'nc_primary_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'monocistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'mini_exon_donor_RNA'::text)) OR ((cvterm.name)::text = 'antisense_primary_transcript'::text)) OR ((cvterm.name)::text = 'capped_primary_transcript'::text)) OR ((cvterm.name)::text = 'pre_edited_mRNA'::text)) OR ((cvterm.name)::text = 'scRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tmRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'SRP_RNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'miRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tasiRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_small_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_large_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'alanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'arginine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'asparagine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'aspartic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'cysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glycine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'histidine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'isoleucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'leucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'lysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methionine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'phenylalanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'proline_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'serine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'threonine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tryptophan_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tyrosine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'valine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'pyrrolysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'selenocysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'U14_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'stRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'mRNA'::text)) OR ((cvterm.name)::text = 'ncRNA'::text)) OR ((cvterm.name)::text = 'mRNA_with_frameshift'::text)) OR ((cvterm.name)::text = 'monocistronic_mRNA'::text)) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'exemplar_mRNA'::text)) OR ((cvterm.name)::text = 'capped_mRNA'::text)) OR ((cvterm.name)::text = 'polyadenylated_mRNA'::text)) OR ((cvterm.name)::text = 'trans_spliced_mRNA'::text)) OR ((cvterm.name)::text = 'edited_mRNA'::text)) OR ((cvterm.name)::text = 'consensus_mRNA'::text)) OR ((cvterm.name)::text = 'recoded_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_2_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_codon_redefinition'::text)) OR ((cvterm.name)::text = 'scRNA'::text)) OR ((cvterm.name)::text = 'rRNA'::text)) OR ((cvterm.name)::text = 'tRNA'::text)) OR ((cvterm.name)::text = 'snRNA'::text)) OR ((cvterm.name)::text = 'snoRNA'::text)) OR ((cvterm.name)::text = 'small_regulatory_ncRNA'::text)) OR ((cvterm.name)::text = 'RNase_MRP_RNA'::text)) OR ((cvterm.name)::text = 'RNase_P_RNA'::text)) OR ((cvterm.name)::text = 'telomerase_RNA'::text)) OR ((cvterm.name)::text = 'vault_RNA'::text)) OR ((cvterm.name)::text = 'Y_RNA'::text)) OR ((cvterm.name)::text = 'rasiRNA'::text)) OR ((cvterm.name)::text = 'SRP_RNA'::text)) OR ((cvterm.name)::text = 'guide_RNA'::text)) OR ((cvterm.name)::text = 'antisense_RNA'::text)) OR ((cvterm.name)::text = 'siRNA'::text)) OR ((cvterm.name)::text = 'stRNA'::text)) OR ((cvterm.name)::text = 'class_II_RNA'::text)) OR ((cvterm.name)::text = 'class_I_RNA'::text)) OR ((cvterm.name)::text = 'piRNA'::text)) OR ((cvterm.name)::text = 'lincRNA'::text)) OR ((cvterm.name)::text = 'tasiRNA'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_RNA'::text)) OR ((cvterm.name)::text = 'small_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'large_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'rRNA_18S'::text)) OR ((cvterm.name)::text = 'rRNA_16S'::text)) OR ((cvterm.name)::text = 'rRNA_5_8S'::text)) OR ((cvterm.name)::text = 'rRNA_5S'::text)) OR ((cvterm.name)::text = 'rRNA_28S'::text)) OR ((cvterm.name)::text = 'rRNA_23S'::text)) OR ((cvterm.name)::text = 'rRNA_25S'::text)) OR ((cvterm.name)::text = 'rRNA_21S'::text)) OR ((cvterm.name)::text = 'alanyl_tRNA'::text)) OR ((cvterm.name)::text = 'asparaginyl_tRNA'::text)) OR ((cvterm.name)::text = 'aspartyl_tRNA'::text)) OR ((cvterm.name)::text = 'cysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutaminyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutamyl_tRNA'::text)) OR ((cvterm.name)::text = 'glycyl_tRNA'::text)) OR ((cvterm.name)::text = 'histidyl_tRNA'::text)) OR ((cvterm.name)::text = 'isoleucyl_tRNA'::text)) OR ((cvterm.name)::text = 'leucyl_tRNA'::text)) OR ((cvterm.name)::text = 'lysyl_tRNA'::text)) OR ((cvterm.name)::text = 'methionyl_tRNA'::text)) OR ((cvterm.name)::text = 'phenylalanyl_tRNA'::text)) OR ((cvterm.name)::text = 'prolyl_tRNA'::text)) OR ((cvterm.name)::text = 'seryl_tRNA'::text)) OR ((cvterm.name)::text = 'threonyl_tRNA'::text)) OR ((cvterm.name)::text = 'tryptophanyl_tRNA'::text)) OR ((cvterm.name)::text = 'tyrosyl_tRNA'::text)) OR ((cvterm.name)::text = 'valyl_tRNA'::text)) OR ((cvterm.name)::text = 'pyrrolysyl_tRNA'::text)) OR ((cvterm.name)::text = 'arginyl_tRNA'::text)) OR ((cvterm.name)::text = 'selenocysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'U1_snRNA'::text)) OR ((cvterm.name)::text = 'U2_snRNA'::text)) OR ((cvterm.name)::text = 'U4_snRNA'::text)) OR ((cvterm.name)::text = 'U4atac_snRNA'::text)) OR ((cvterm.name)::text = 'U5_snRNA'::text)) OR ((cvterm.name)::text = 'U6_snRNA'::text)) OR ((cvterm.name)::text = 'U6atac_snRNA'::text)) OR ((cvterm.name)::text = 'U11_snRNA'::text)) OR ((cvterm.name)::text = 'U12_snRNA'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA'::text)) OR ((cvterm.name)::text = 'U14_snoRNA'::text)) OR ((cvterm.name)::text = 'U3_snoRNA'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'pseudouridylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'miRNA'::text)) OR ((cvterm.name)::text = 'RNA_6S'::text)) OR ((cvterm.name)::text = 'CsrB_RsmB_RNA'::text)) OR ((cvterm.name)::text = 'DsrA_RNA'::text)) OR ((cvterm.name)::text = 'OxyS_RNA'::text)) OR ((cvterm.name)::text = 'RprA_RNA'::text)) OR ((cvterm.name)::text = 'RRE_RNA'::text)) OR ((cvterm.name)::text = 'spot_42_RNA'::text)) OR ((cvterm.name)::text = 'tmRNA'::text)) OR ((cvterm.name)::text = 'GcvB_RNA'::text)) OR ((cvterm.name)::text = 'MicF_RNA'::text)) OR ((cvterm.name)::text = 'ribozyme'::text)) OR ((cvterm.name)::text = 'trans_spliced_mRNA'::text)) OR ((cvterm.name)::text = 'monocistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'monocistronic_mRNA'::text)) OR ((cvterm.name)::text = 'edited_transcript_by_A_to_I_substitution'::text)) OR ((cvterm.name)::text = 'edited_mRNA'::text)) OR ((cvterm.name)::text = 'transcription_regulatory_region'::text)) OR ((cvterm.name)::text = 'translation_regulatory_region'::text)) OR ((cvterm.name)::text = 'recombination_regulatory_region'::text)) OR ((cvterm.name)::text = 'replication_regulatory_region'::text)) OR ((cvterm.name)::text = 'terminator'::text)) OR ((cvterm.name)::text = 'TF_binding_site'::text)) OR ((cvterm.name)::text = 'polyA_signal_sequence'::text)) OR ((cvterm.name)::text = 'gene_group_regulatory_region'::text)) OR ((cvterm.name)::text = 'transcriptional_cis_regulatory_region'::text)) OR ((cvterm.name)::text = 'splicing_regulatory_region'::text)) OR ((cvterm.name)::text = 'cis_regulatory_frameshift_element'::text)) OR ((cvterm.name)::text = 'intronic_regulatory_region'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text)) OR ((cvterm.name)::text = 'eukaryotic_terminator'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'terminator_of_type_2_RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'operator'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'promoter'::text)) OR ((cvterm.name)::text = 'insulator'::text)) OR ((cvterm.name)::text = 'CRM'::text)) OR ((cvterm.name)::text = 'promoter_targeting_sequence'::text)) OR ((cvterm.name)::text = 'ISRE'::text)) OR ((cvterm.name)::text = 'bidirectional_promoter'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_I_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'Phage_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_core_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'locus_control_region'::text)) OR ((cvterm.name)::text = 'enhancer'::text)) OR ((cvterm.name)::text = 'silencer'::text)) OR ((cvterm.name)::text = 'enhancer_bound_by_factor'::text)) OR ((cvterm.name)::text = 'shadow_enhancer'::text)) OR ((cvterm.name)::text = 'splice_enhancer'::text)) OR ((cvterm.name)::text = 'intronic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'exonic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'attenuator'::text)) OR ((cvterm.name)::text = 'gene_member_region'::text));
- --
- -- Name: gene_rearranged_at_dna_level; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_rearranged_at_dna_level AS
- SELECT feature.feature_id AS gene_rearranged_at_dna_level_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_rearranged_at_DNA_level'::text);
- --
- -- Name: gene_segment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_segment AS
- SELECT feature.feature_id AS gene_segment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'pseudogenic_gene_segment'::text) OR ((cvterm.name)::text = 'gene_segment'::text));
- --
- -- Name: gene_silenced_by_dna_methylation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_silenced_by_dna_methylation AS
- SELECT feature.feature_id AS gene_silenced_by_dna_methylation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_silenced_by_DNA_methylation'::text);
- --
- -- Name: gene_silenced_by_dna_modification; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_silenced_by_dna_modification AS
- SELECT feature.feature_id AS gene_silenced_by_dna_modification_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'gene_silenced_by_DNA_methylation'::text) OR ((cvterm.name)::text = 'gene_silenced_by_DNA_modification'::text));
- --
- -- Name: gene_silenced_by_histone_deacetylation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_silenced_by_histone_deacetylation AS
- SELECT feature.feature_id AS gene_silenced_by_histone_deacetylation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_silenced_by_histone_deacetylation'::text);
- --
- -- Name: gene_silenced_by_histone_methylation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_silenced_by_histone_methylation AS
- SELECT feature.feature_id AS gene_silenced_by_histone_methylation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_silenced_by_histone_methylation'::text);
- --
- -- Name: gene_silenced_by_histone_modification; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_silenced_by_histone_modification AS
- SELECT feature.feature_id AS gene_silenced_by_histone_modification_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'gene_silenced_by_histone_methylation'::text) OR ((cvterm.name)::text = 'gene_silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_histone_modification'::text));
- --
- -- Name: gene_silenced_by_rna_interference; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_silenced_by_rna_interference AS
- SELECT feature.feature_id AS gene_silenced_by_rna_interference_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_silenced_by_RNA_interference'::text);
- --
- -- Name: gene_subarray; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_subarray AS
- SELECT feature.feature_id AS gene_subarray_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_subarray'::text);
- --
- -- Name: gene_subarray_member; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_subarray_member AS
- SELECT feature.feature_id AS gene_subarray_member_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_subarray_member'::text);
- --
- -- Name: gene_to_gene_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_to_gene_feature AS
- SELECT feature.feature_id AS gene_to_gene_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((cvterm.name)::text = 'overlapping'::text) OR ((cvterm.name)::text = 'inside_intron'::text)) OR ((cvterm.name)::text = 'five_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'five_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'antisense'::text)) OR ((cvterm.name)::text = 'inside_intron_antiparallel'::text)) OR ((cvterm.name)::text = 'inside_intron_parallel'::text)) OR ((cvterm.name)::text = 'gene_to_gene_feature'::text));
- --
- -- Name: gene_trap_construct; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_trap_construct AS
- SELECT feature.feature_id AS gene_trap_construct_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_trap_construct'::text);
- --
- -- Name: gene_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_variant AS
- SELECT feature.feature_id AS gene_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'gene_fusion'::text) OR ((cvterm.name)::text = 'splicing_variant'::text)) OR ((cvterm.name)::text = 'transcript_variant'::text)) OR ((cvterm.name)::text = 'translational_product_structure_variant'::text)) OR ((cvterm.name)::text = 'cryptic_splice_site_variant'::text)) OR ((cvterm.name)::text = 'exon_loss'::text)) OR ((cvterm.name)::text = 'intron_gain'::text)) OR ((cvterm.name)::text = 'splice_region_variant'::text)) OR ((cvterm.name)::text = 'cryptic_splice_acceptor'::text)) OR ((cvterm.name)::text = 'cryptic_splice_donor'::text)) OR ((cvterm.name)::text = 'complex_change_in_transcript'::text)) OR ((cvterm.name)::text = 'transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'nc_transcript_variant'::text)) OR ((cvterm.name)::text = 'NMD_transcript_variant'::text)) OR ((cvterm.name)::text = 'UTR_variant'::text)) OR ((cvterm.name)::text = 'intron_variant'::text)) OR ((cvterm.name)::text = 'exon_variant'::text)) OR ((cvterm.name)::text = 'compensatory_transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'mature_miRNA_variant'::text)) OR ((cvterm.name)::text = '5_prime_UTR_variant'::text)) OR ((cvterm.name)::text = '3_prime_UTR_variant'::text)) OR ((cvterm.name)::text = 'splice_site_variant'::text)) OR ((cvterm.name)::text = 'splice_acceptor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_5th_base_variant'::text)) OR ((cvterm.name)::text = 'coding_sequence_variant'::text)) OR ((cvterm.name)::text = 'non_coding_exon_variant'::text)) OR ((cvterm.name)::text = 'codon_variant'::text)) OR ((cvterm.name)::text = 'frameshift_variant'::text)) OR ((cvterm.name)::text = 'inframe_variant'::text)) OR ((cvterm.name)::text = 'initiator_codon_change'::text)) OR ((cvterm.name)::text = 'non_synonymous_codon'::text)) OR ((cvterm.name)::text = 'synonymous_codon'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_gained'::text)) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text)) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'frame_restoring_variant'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_2_frameshift variant'::text)) OR ((cvterm.name)::text = 'inframe_codon_gain'::text)) OR ((cvterm.name)::text = 'inframe_codon_loss'::text)) OR ((cvterm.name)::text = '3D_polypeptide_structure_variant'::text)) OR ((cvterm.name)::text = 'complex_change_of_translational_product_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_sequence_variant'::text)) OR ((cvterm.name)::text = 'complex_3D_structural_variant'::text)) OR ((cvterm.name)::text = 'conformational_change_variant'::text)) OR ((cvterm.name)::text = 'amino_acid_deletion'::text)) OR ((cvterm.name)::text = 'amino_acid_insertion'::text)) OR ((cvterm.name)::text = 'amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide'::text)) OR ((cvterm.name)::text = 'polypeptide_fusion'::text)) OR ((cvterm.name)::text = 'polypeptide_truncation'::text)) OR ((cvterm.name)::text = 'conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'non_conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'gene_variant'::text));
- --
- -- Name: gene_with_dicistronic_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_dicistronic_mrna AS
- SELECT feature.feature_id AS gene_with_dicistronic_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_with_dicistronic_mRNA'::text);
- --
- -- Name: gene_with_dicistronic_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_dicistronic_primary_transcript AS
- SELECT feature.feature_id AS gene_with_dicistronic_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_with_dicistronic_primary_transcript'::text);
- --
- -- Name: gene_with_dicistronic_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_dicistronic_transcript AS
- SELECT feature.feature_id AS gene_with_dicistronic_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'gene_with_dicistronic_primary_transcript'::text) OR ((cvterm.name)::text = 'gene_with_dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'gene_with_dicistronic_transcript'::text));
- --
- -- Name: gene_with_edited_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_edited_transcript AS
- SELECT feature.feature_id AS gene_with_edited_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_with_edited_transcript'::text);
- --
- -- Name: gene_with_mrna_recoded_by_translational_bypass; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_mrna_recoded_by_translational_bypass AS
- SELECT feature.feature_id AS gene_with_mrna_recoded_by_translational_bypass_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_with_mRNA_recoded_by_translational_bypass'::text);
- --
- -- Name: gene_with_mrna_with_frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_mrna_with_frameshift AS
- SELECT feature.feature_id AS gene_with_mrna_with_frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_with_mRNA_with_frameshift'::text);
- --
- -- Name: gene_with_non_canonical_start_codon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_non_canonical_start_codon AS
- SELECT feature.feature_id AS gene_with_non_canonical_start_codon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'gene_with_start_codon_CUG'::text) OR ((cvterm.name)::text = 'gene_with_non_canonical_start_codon'::text));
- --
- -- Name: gene_with_polyadenylated_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_polyadenylated_mrna AS
- SELECT feature.feature_id AS gene_with_polyadenylated_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_with_polyadenylated_mRNA'::text);
- --
- -- Name: gene_with_polycistronic_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_polycistronic_transcript AS
- SELECT feature.feature_id AS gene_with_polycistronic_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'gene_with_dicistronic_transcript'::text) OR ((cvterm.name)::text = 'gene_with_dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'gene_with_dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'gene_with_polycistronic_transcript'::text));
- --
- -- Name: gene_with_recoded_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_recoded_mrna AS
- SELECT feature.feature_id AS gene_with_recoded_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'gene_with_stop_codon_read_through'::text) OR ((cvterm.name)::text = 'gene_with_mRNA_recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'gene_with_transcript_with_translational_frameshift'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'gene_with_recoded_mRNA'::text));
- --
- -- Name: gene_with_start_codon_cug; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_start_codon_cug AS
- SELECT feature.feature_id AS gene_with_start_codon_cug_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_with_start_codon_CUG'::text);
- --
- -- Name: gene_with_stop_codon_read_through; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_stop_codon_read_through AS
- SELECT feature.feature_id AS gene_with_stop_codon_read_through_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_pyrrolysine'::text) OR ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_read_through'::text));
- --
- -- Name: gene_with_stop_codon_redefined_as_pyrrolysine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_stop_codon_redefined_as_pyrrolysine AS
- SELECT feature.feature_id AS gene_with_stop_codon_redefined_as_pyrrolysine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_pyrrolysine'::text);
- --
- -- Name: gene_with_stop_codon_redefined_as_selenocysteine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_stop_codon_redefined_as_selenocysteine AS
- SELECT feature.feature_id AS gene_with_stop_codon_redefined_as_selenocysteine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_selenocysteine'::text);
- --
- -- Name: gene_with_trans_spliced_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_trans_spliced_transcript AS
- SELECT feature.feature_id AS gene_with_trans_spliced_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_with_trans_spliced_transcript'::text);
- --
- -- Name: gene_with_transcript_with_translational_frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gene_with_transcript_with_translational_frameshift AS
- SELECT feature.feature_id AS gene_with_transcript_with_translational_frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gene_with_transcript_with_translational_frameshift'::text);
- --
- -- Name: genetic_marker; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW genetic_marker AS
- SELECT feature.feature_id AS genetic_marker_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'heritable_phenotypic_marker'::text) OR ((cvterm.name)::text = 'DArT_marker'::text)) OR ((cvterm.name)::text = 'genetic_marker'::text));
- --
- -- Name: genome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW genome AS
- SELECT feature.feature_id AS genome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'kinetoplast'::text) OR ((cvterm.name)::text = 'reference_genome'::text)) OR ((cvterm.name)::text = 'variant_genome'::text)) OR ((cvterm.name)::text = 'chromosomally_aberrant_genome'::text)) OR ((cvterm.name)::text = 'genome'::text));
- --
- -- Name: genomic_clone; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW genomic_clone AS
- SELECT feature.feature_id AS genomic_clone_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'genomic_clone'::text);
- --
- -- Name: genomic_dna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW genomic_dna AS
- SELECT feature.feature_id AS genomic_dna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'genomic_DNA'::text);
- --
- -- Name: genomic_island; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW genomic_island AS
- SELECT feature.feature_id AS genomic_island_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'pathogenic_island'::text) OR ((cvterm.name)::text = 'metabolic_island'::text)) OR ((cvterm.name)::text = 'adaptive_island'::text)) OR ((cvterm.name)::text = 'symbiosis_island'::text)) OR ((cvterm.name)::text = 'cryptic_prophage'::text)) OR ((cvterm.name)::text = 'defective_conjugative_transposon'::text)) OR ((cvterm.name)::text = 'genomic_island'::text));
- --
- -- Name: genomically_contaminated_cdna_clone; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW genomically_contaminated_cdna_clone AS
- SELECT feature.feature_id AS genomically_contaminated_cdna_clone_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text);
- --
- -- Name: germline_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW germline_variant AS
- SELECT feature.feature_id AS germline_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'germline_variant'::text);
- --
- -- Name: glutamic_acid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW glutamic_acid AS
- SELECT feature.feature_id AS glutamic_acid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'glutamic_acid'::text);
- --
- -- Name: glutamic_acid_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW glutamic_acid_trna_primary_transcript AS
- SELECT feature.feature_id AS glutamic_acid_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'glutamic_acid_tRNA_primary_transcript'::text);
- --
- -- Name: glutamine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW glutamine AS
- SELECT feature.feature_id AS glutamine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'glutamine'::text);
- --
- -- Name: glutamine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW glutamine_trna_primary_transcript AS
- SELECT feature.feature_id AS glutamine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'glutamine_tRNA_primary_transcript'::text);
- --
- -- Name: glutaminyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW glutaminyl_trna AS
- SELECT feature.feature_id AS glutaminyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'glutaminyl_tRNA'::text);
- --
- -- Name: glutamyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW glutamyl_trna AS
- SELECT feature.feature_id AS glutamyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'glutamyl_tRNA'::text);
- --
- -- Name: glycine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW glycine AS
- SELECT feature.feature_id AS glycine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'glycine'::text);
- --
- -- Name: glycine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW glycine_trna_primary_transcript AS
- SELECT feature.feature_id AS glycine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'glycine_tRNA_primary_transcript'::text);
- --
- -- Name: glycyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW glycyl_trna AS
- SELECT feature.feature_id AS glycyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'glycyl_tRNA'::text);
- --
- -- Name: gna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gna AS
- SELECT feature.feature_id AS gna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'R_GNA'::text) OR ((cvterm.name)::text = 'S_GNA'::text)) OR ((cvterm.name)::text = 'GNA'::text));
- --
- -- Name: gna_oligo; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW gna_oligo AS
- SELECT feature.feature_id AS gna_oligo_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'R_GNA_oligo'::text) OR ((cvterm.name)::text = 'S_GNA_oligo'::text)) OR ((cvterm.name)::text = 'GNA_oligo'::text));
- --
- -- Name: golden_path; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW golden_path AS
- SELECT feature.feature_id AS golden_path_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'golden_path'::text);
- --
- -- Name: golden_path_fragment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW golden_path_fragment AS
- SELECT feature.feature_id AS golden_path_fragment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'golden_path_fragment'::text);
- --
- -- Name: grna_encoding; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW grna_encoding AS
- SELECT feature.feature_id AS grna_encoding_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gRNA_encoding'::text);
- --
- -- Name: grna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW grna_gene AS
- SELECT feature.feature_id AS grna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'gRNA_gene'::text);
- --
- -- Name: group_1_intron_homing_endonuclease_target_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW group_1_intron_homing_endonuclease_target_region AS
- SELECT feature.feature_id AS group_1_intron_homing_endonuclease_target_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'group_1_intron_homing_endonuclease_target_region'::text);
- --
- -- Name: group_i_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW group_i_intron AS
- SELECT feature.feature_id AS group_i_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'group_I_intron'::text);
- --
- -- Name: group_ii_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW group_ii_intron AS
- SELECT feature.feature_id AS group_ii_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'group_IIA_intron'::text) OR ((cvterm.name)::text = 'group_IIB_intron'::text)) OR ((cvterm.name)::text = 'group_II_intron'::text));
- --
- -- Name: group_iia_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW group_iia_intron AS
- SELECT feature.feature_id AS group_iia_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'group_IIA_intron'::text);
- --
- -- Name: group_iib_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW group_iib_intron AS
- SELECT feature.feature_id AS group_iib_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'group_IIB_intron'::text);
- --
- -- Name: group_iii_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW group_iii_intron AS
- SELECT feature.feature_id AS group_iii_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'group_III_intron'::text);
- --
- -- Name: guide_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW guide_rna AS
- SELECT feature.feature_id AS guide_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'guide_RNA'::text);
- --
- -- Name: guide_rna_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW guide_rna_region AS
- SELECT feature.feature_id AS guide_rna_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'anchor_region'::text) OR ((cvterm.name)::text = 'template_region'::text)) OR ((cvterm.name)::text = 'guide_RNA_region'::text));
- --
- -- Name: h2b_ubiquitination_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h2b_ubiquitination_site AS
- SELECT feature.feature_id AS h2b_ubiquitination_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H2B_ubiquitination_site'::text);
- --
- -- Name: h2bk5_monomethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h2bk5_monomethylation_site AS
- SELECT feature.feature_id AS h2bk5_monomethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text);
- --
- -- Name: h3k14_acetylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k14_acetylation_site AS
- SELECT feature.feature_id AS h3k14_acetylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K14_acetylation_site'::text);
- --
- -- Name: h3k18_acetylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k18_acetylation_site AS
- SELECT feature.feature_id AS h3k18_acetylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K18_acetylation_site'::text);
- --
- -- Name: h3k23_acylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k23_acylation_site AS
- SELECT feature.feature_id AS h3k23_acylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K23_acylation site'::text);
- --
- -- Name: h3k27_acylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k27_acylation_site AS
- SELECT feature.feature_id AS h3k27_acylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K27_acylation_site'::text);
- --
- -- Name: h3k27_dimethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k27_dimethylation_site AS
- SELECT feature.feature_id AS h3k27_dimethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K27_dimethylation_site'::text);
- --
- -- Name: h3k27_methylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k27_methylation_site AS
- SELECT feature.feature_id AS h3k27_methylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'H3K27_monomethylation_site'::text) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text));
- --
- -- Name: h3k27_monomethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k27_monomethylation_site AS
- SELECT feature.feature_id AS h3k27_monomethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K27_monomethylation_site'::text);
- --
- -- Name: h3k27_trimethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k27_trimethylation_site AS
- SELECT feature.feature_id AS h3k27_trimethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K27_trimethylation_site'::text);
- --
- -- Name: h3k36_dimethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k36_dimethylation_site AS
- SELECT feature.feature_id AS h3k36_dimethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K36_dimethylation_site'::text);
- --
- -- Name: h3k36_methylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k36_methylation_site AS
- SELECT feature.feature_id AS h3k36_methylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'H3K36_monomethylation_site'::text) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text));
- --
- -- Name: h3k36_monomethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k36_monomethylation_site AS
- SELECT feature.feature_id AS h3k36_monomethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K36_monomethylation_site'::text);
- --
- -- Name: h3k36_trimethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k36_trimethylation_site AS
- SELECT feature.feature_id AS h3k36_trimethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K36_trimethylation_site'::text);
- --
- -- Name: h3k4_dimethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k4_dimethylation_site AS
- SELECT feature.feature_id AS h3k4_dimethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K4_dimethylation_site'::text);
- --
- -- Name: h3k4_methylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k4_methylation_site AS
- SELECT feature.feature_id AS h3k4_methylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'H3K4_monomethylation_site'::text) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text));
- --
- -- Name: h3k4_monomethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k4_monomethylation_site AS
- SELECT feature.feature_id AS h3k4_monomethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K4_monomethylation_site'::text);
- --
- -- Name: h3k4_trimethylation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k4_trimethylation AS
- SELECT feature.feature_id AS h3k4_trimethylation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K4_trimethylation'::text);
- --
- -- Name: h3k79_dimethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k79_dimethylation_site AS
- SELECT feature.feature_id AS h3k79_dimethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K79_dimethylation_site'::text);
- --
- -- Name: h3k79_methylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k79_methylation_site AS
- SELECT feature.feature_id AS h3k79_methylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'H3K79_monomethylation_site'::text) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text));
- --
- -- Name: h3k79_monomethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k79_monomethylation_site AS
- SELECT feature.feature_id AS h3k79_monomethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K79_monomethylation_site'::text);
- --
- -- Name: h3k79_trimethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k79_trimethylation_site AS
- SELECT feature.feature_id AS h3k79_trimethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K79_trimethylation_site'::text);
- --
- -- Name: h3k9_acetylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k9_acetylation_site AS
- SELECT feature.feature_id AS h3k9_acetylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K9_acetylation_site'::text);
- --
- -- Name: h3k9_dimethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k9_dimethylation_site AS
- SELECT feature.feature_id AS h3k9_dimethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K9_dimethylation_site'::text);
- --
- -- Name: h3k9_methylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k9_methylation_site AS
- SELECT feature.feature_id AS h3k9_methylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'H3K9_trimethylation_site'::text) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text));
- --
- -- Name: h3k9_monomethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k9_monomethylation_site AS
- SELECT feature.feature_id AS h3k9_monomethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K9_monomethylation_site'::text);
- --
- -- Name: h3k9_trimethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h3k9_trimethylation_site AS
- SELECT feature.feature_id AS h3k9_trimethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H3K9_trimethylation_site'::text);
- --
- -- Name: h4k16_acylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h4k16_acylation_site AS
- SELECT feature.feature_id AS h4k16_acylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H4K16_acylation_site'::text);
- --
- -- Name: h4k20_monomethylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h4k20_monomethylation_site AS
- SELECT feature.feature_id AS h4k20_monomethylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H4K20_monomethylation_site'::text);
- --
- -- Name: h4k5_acylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h4k5_acylation_site AS
- SELECT feature.feature_id AS h4k5_acylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H4K5_acylation_site'::text);
- --
- -- Name: h4k8_acylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h4k8_acylation_site AS
- SELECT feature.feature_id AS h4k8_acylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H4K8_acylation site'::text);
- --
- -- Name: h4k_acylation_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h4k_acylation_region AS
- SELECT feature.feature_id AS h4k_acylation_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H4K_acylation_region'::text);
- --
- -- Name: h_aca_box_snorna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h_aca_box_snorna AS
- SELECT feature.feature_id AS h_aca_box_snorna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'pseudouridylation_guide_snoRNA'::text) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA'::text));
- --
- -- Name: h_aca_box_snorna_encoding; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h_aca_box_snorna_encoding AS
- SELECT feature.feature_id AS h_aca_box_snorna_encoding_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H_ACA_box_snoRNA_encoding'::text);
- --
- -- Name: h_aca_box_snorna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h_aca_box_snorna_primary_transcript AS
- SELECT feature.feature_id AS h_aca_box_snorna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H_ACA_box_snoRNA_primary_transcript'::text);
- --
- -- Name: h_pseudoknot; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW h_pseudoknot AS
- SELECT feature.feature_id AS h_pseudoknot_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'H_pseudoknot'::text);
- --
- -- Name: hammerhead_ribozyme; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW hammerhead_ribozyme AS
- SELECT feature.feature_id AS hammerhead_ribozyme_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'hammerhead_ribozyme'::text);
- --
- -- Name: haplotype; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW haplotype AS
- SELECT feature.feature_id AS haplotype_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'haplotype'::text);
- --
- -- Name: haplotype_block; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW haplotype_block AS
- SELECT feature.feature_id AS haplotype_block_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'haplotype_block'::text);
- --
- -- Name: helitron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW helitron AS
- SELECT feature.feature_id AS helitron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'helitron'::text);
- --
- -- Name: helix_turn_helix; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW helix_turn_helix AS
- SELECT feature.feature_id AS helix_turn_helix_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'helix_turn_helix'::text);
- --
- -- Name: heptamer_of_recombination_feature_of_vertebrate_im_sys_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW heptamer_of_recombination_feature_of_vertebrate_im_sys_gene AS
- SELECT feature.feature_id AS heptamer_of_recombination_feature_of_vertebrate_im_sys_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'three_prime_D_heptamer'::text) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text));
- --
- -- Name: heritable_phenotypic_marker; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW heritable_phenotypic_marker AS
- SELECT feature.feature_id AS heritable_phenotypic_marker_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'heritable_phenotypic_marker'::text);
- --
- -- Name: hetero_compound_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW hetero_compound_chromosome AS
- SELECT feature.feature_id AS hetero_compound_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'hetero_compound_chromosome'::text);
- --
- -- Name: high_identity_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW high_identity_region AS
- SELECT feature.feature_id AS high_identity_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'high_identity_region'::text);
- --
- -- Name: high_quality_draft; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW high_quality_draft AS
- SELECT feature.feature_id AS high_quality_draft_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'high_quality_draft'::text);
- --
- -- Name: histidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW histidine AS
- SELECT feature.feature_id AS histidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'histidine'::text);
- --
- -- Name: histidine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW histidine_trna_primary_transcript AS
- SELECT feature.feature_id AS histidine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'histidine_tRNA_primary_transcript'::text);
- --
- -- Name: histidyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW histidyl_trna AS
- SELECT feature.feature_id AS histidyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'histidyl_tRNA'::text);
- --
- -- Name: histone_acetylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW histone_acetylation_site AS
- SELECT feature.feature_id AS histone_acetylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((cvterm.name)::text = 'H3K9_acetylation_site'::text) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text));
- --
- -- Name: histone_acylation_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW histone_acylation_region AS
- SELECT feature.feature_id AS histone_acylation_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'H4K_acylation_region'::text) OR ((cvterm.name)::text = 'histone_acylation_region'::text));
- --
- -- Name: histone_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW histone_binding_site AS
- SELECT feature.feature_id AS histone_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'histone_binding_site'::text);
- --
- -- Name: histone_methylation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW histone_methylation_site AS
- SELECT feature.feature_id AS histone_methylation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((cvterm.name)::text = 'H4K20_monomethylation_site'::text) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text));
- --
- -- Name: histone_modification; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW histone_modification AS
- SELECT feature.feature_id AS histone_modification_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'histone_methylation_site'::text) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'histone_modification'::text));
- --
- -- Name: histone_ubiqitination_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW histone_ubiqitination_site AS
- SELECT feature.feature_id AS histone_ubiqitination_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'H2B_ubiquitination_site'::text) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text));
- --
- -- Name: homing_endonuclease_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW homing_endonuclease_binding_site AS
- SELECT feature.feature_id AS homing_endonuclease_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'homing_endonuclease_binding_site'::text);
- --
- -- Name: homo_compound_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW homo_compound_chromosome AS
- SELECT feature.feature_id AS homo_compound_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'homo_compound_chromosome'::text);
- --
- -- Name: homologous; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW homologous AS
- SELECT feature.feature_id AS homologous_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'orthologous'::text) OR ((cvterm.name)::text = 'paralogous'::text)) OR ((cvterm.name)::text = 'homologous'::text));
- --
- -- Name: homologous_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW homologous_region AS
- SELECT feature.feature_id AS homologous_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'paralogous_region'::text) OR ((cvterm.name)::text = 'orthologous_region'::text)) OR ((cvterm.name)::text = 'homologous_region'::text));
- --
- -- Name: hoogsteen_base_pair; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW hoogsteen_base_pair AS
- SELECT feature.feature_id AS hoogsteen_base_pair_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'Hoogsteen_base_pair'::text);
- --
- -- Name: hydrophobic_region_of_peptide; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW hydrophobic_region_of_peptide AS
- SELECT feature.feature_id AS hydrophobic_region_of_peptide_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'hydrophobic_region_of_peptide'::text);
- --
- -- Name: hydroxywybutosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW hydroxywybutosine AS
- SELECT feature.feature_id AS hydroxywybutosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'hydroxywybutosine'::text);
- --
- -- Name: hyperploid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW hyperploid AS
- SELECT feature.feature_id AS hyperploid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'hyperploid'::text);
- --
- -- Name: hypoploid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW hypoploid AS
- SELECT feature.feature_id AS hypoploid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'hypoploid'::text);
- --
- -- Name: i_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW i_motif AS
- SELECT feature.feature_id AS i_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'i_motif'::text);
- --
- -- Name: idna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW idna AS
- SELECT feature.feature_id AS idna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'iDNA'::text);
- --
- -- Name: immature_peptide_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW immature_peptide_region AS
- SELECT feature.feature_id AS immature_peptide_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'immature_peptide_region'::text);
- --
- -- Name: imprinted; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW imprinted AS
- SELECT feature.feature_id AS imprinted_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'maternally_imprinted'::text) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'imprinted'::text));
- --
- -- Name: improved_high_quality_draft; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW improved_high_quality_draft AS
- SELECT feature.feature_id AS improved_high_quality_draft_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'improved_high_quality_draft'::text);
- --
- -- Name: inactive_catalytic_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inactive_catalytic_site AS
- SELECT feature.feature_id AS inactive_catalytic_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inactive_catalytic_site'::text);
- --
- -- Name: inactive_ligand_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inactive_ligand_binding_site AS
- SELECT feature.feature_id AS inactive_ligand_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'inactive_catalytic_site'::text) OR ((cvterm.name)::text = 'inactive_ligand_binding_site'::text));
- --
- -- Name: incomplete_terminal_codon_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW incomplete_terminal_codon_variant AS
- SELECT feature.feature_id AS incomplete_terminal_codon_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text);
- --
- -- Name: increased_polyadenylation_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW increased_polyadenylation_variant AS
- SELECT feature.feature_id AS increased_polyadenylation_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'increased_polyadenylation_variant'::text);
- --
- -- Name: increased_transcript_level_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW increased_transcript_level_variant AS
- SELECT feature.feature_id AS increased_transcript_level_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'increased_transcript_level_variant'::text);
- --
- -- Name: increased_transcript_stability_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW increased_transcript_stability_variant AS
- SELECT feature.feature_id AS increased_transcript_stability_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'increased_transcript_stability_variant'::text);
- --
- -- Name: increased_transcription_rate_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW increased_transcription_rate_variant AS
- SELECT feature.feature_id AS increased_transcription_rate_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'increased_transcription_rate_variant'::text);
- --
- -- Name: increased_translational_product_level; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW increased_translational_product_level AS
- SELECT feature.feature_id AS increased_translational_product_level_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'increased_translational_product_level'::text);
- --
- -- Name: indel; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW indel AS
- SELECT feature.feature_id AS indel_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'indel'::text);
- --
- -- Name: independently_known; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW independently_known AS
- SELECT feature.feature_id AS independently_known_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'independently_known'::text);
- --
- -- Name: inframe_codon_gain; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inframe_codon_gain AS
- SELECT feature.feature_id AS inframe_codon_gain_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inframe_codon_gain'::text);
- --
- -- Name: inframe_codon_loss; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inframe_codon_loss AS
- SELECT feature.feature_id AS inframe_codon_loss_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inframe_codon_loss'::text);
- --
- -- Name: inframe_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inframe_variant AS
- SELECT feature.feature_id AS inframe_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'inframe_codon_gain'::text) OR ((cvterm.name)::text = 'inframe_codon_loss'::text)) OR ((cvterm.name)::text = 'inframe_variant'::text));
- --
- -- Name: initiator_codon_change; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW initiator_codon_change AS
- SELECT feature.feature_id AS initiator_codon_change_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'initiator_codon_change'::text);
- --
- -- Name: inosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inosine AS
- SELECT feature.feature_id AS inosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'modified_inosine'::text) OR ((cvterm.name)::text = 'methylinosine'::text)) OR ((cvterm.name)::text = 'one_methylinosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylinosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylinosine'::text)) OR ((cvterm.name)::text = 'inosine'::text));
- --
- -- Name: inr1_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inr1_motif AS
- SELECT feature.feature_id AS inr1_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'INR1_motif'::text);
- --
- -- Name: inr_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inr_motif AS
- SELECT feature.feature_id AS inr_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'INR_motif'::text);
- --
- -- Name: insertion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW insertion AS
- SELECT feature.feature_id AS insertion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'transgenic_insertion'::text) OR ((cvterm.name)::text = 'duplication'::text)) OR ((cvterm.name)::text = 'tandem_duplication'::text)) OR ((cvterm.name)::text = 'direct_tandem_duplication'::text)) OR ((cvterm.name)::text = 'inverted_tandem_duplication'::text)) OR ((cvterm.name)::text = 'insertion'::text));
- --
- -- Name: insertion_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW insertion_attribute AS
- SELECT feature.feature_id AS insertion_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'tandem'::text) OR ((cvterm.name)::text = 'direct'::text)) OR ((cvterm.name)::text = 'inverted'::text)) OR ((cvterm.name)::text = 'insertion_attribute'::text));
- --
- -- Name: insertion_breakpoint; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW insertion_breakpoint AS
- SELECT feature.feature_id AS insertion_breakpoint_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'insertion_breakpoint'::text);
- --
- -- Name: insertion_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW insertion_sequence AS
- SELECT feature.feature_id AS insertion_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'insertion_sequence'::text);
- --
- -- Name: insertion_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW insertion_site AS
- SELECT feature.feature_id AS insertion_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'transposable_element_insertion_site'::text) OR ((cvterm.name)::text = 'insertion_site'::text));
- --
- -- Name: insertional; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW insertional AS
- SELECT feature.feature_id AS insertional_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'insertional'::text);
- --
- -- Name: insertional_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW insertional_duplication AS
- SELECT feature.feature_id AS insertional_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'uninverted_insertional_duplication'::text) OR ((cvterm.name)::text = 'inverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'unoriented_insertional_duplication'::text)) OR ((cvterm.name)::text = 'insertional_duplication'::text));
- --
- -- Name: inside_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inside_intron AS
- SELECT feature.feature_id AS inside_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'inside_intron_antiparallel'::text) OR ((cvterm.name)::text = 'inside_intron_parallel'::text)) OR ((cvterm.name)::text = 'inside_intron'::text));
- --
- -- Name: inside_intron_antiparallel; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inside_intron_antiparallel AS
- SELECT feature.feature_id AS inside_intron_antiparallel_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inside_intron_antiparallel'::text);
- --
- -- Name: inside_intron_parallel; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inside_intron_parallel AS
- SELECT feature.feature_id AS inside_intron_parallel_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inside_intron_parallel'::text);
- --
- -- Name: insulator; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW insulator AS
- SELECT feature.feature_id AS insulator_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'insulator'::text);
- --
- -- Name: insulator_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW insulator_binding_site AS
- SELECT feature.feature_id AS insulator_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'insulator_binding_site'::text);
- --
- -- Name: integrated_mobile_genetic_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW integrated_mobile_genetic_element AS
- SELECT feature.feature_id AS integrated_mobile_genetic_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'transposable_element'::text) OR ((cvterm.name)::text = 'proviral_region'::text)) OR ((cvterm.name)::text = 'integron'::text)) OR ((cvterm.name)::text = 'genomic_island'::text)) OR ((cvterm.name)::text = 'integrated_plasmid'::text)) OR ((cvterm.name)::text = 'cointegrated_plasmid'::text)) OR ((cvterm.name)::text = 'retrotransposon'::text)) OR ((cvterm.name)::text = 'DNA_transposon'::text)) OR ((cvterm.name)::text = 'foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'transgenic_transposable_element'::text)) OR ((cvterm.name)::text = 'natural_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'nested_transposon'::text)) OR ((cvterm.name)::text = 'LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'LINE_element'::text)) OR ((cvterm.name)::text = 'SINE_element'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat_element'::text)) OR ((cvterm.name)::text = 'foldback_element'::text)) OR ((cvterm.name)::text = 'conjugative_transposon'::text)) OR ((cvterm.name)::text = 'helitron'::text)) OR ((cvterm.name)::text = 'p_element'::text)) OR ((cvterm.name)::text = 'MITE'::text)) OR ((cvterm.name)::text = 'insertion_sequence'::text)) OR ((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'prophage'::text)) OR ((cvterm.name)::text = 'pathogenic_island'::text)) OR ((cvterm.name)::text = 'metabolic_island'::text)) OR ((cvterm.name)::text = 'adaptive_island'::text)) OR ((cvterm.name)::text = 'symbiosis_island'::text)) OR ((cvterm.name)::text = 'cryptic_prophage'::text)) OR ((cvterm.name)::text = 'defective_conjugative_transposon'::text)) OR ((cvterm.name)::text = 'integrated_mobile_genetic_element'::text));
- --
- -- Name: integrated_plasmid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW integrated_plasmid AS
- SELECT feature.feature_id AS integrated_plasmid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'integrated_plasmid'::text);
- --
- -- Name: integration_excision_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW integration_excision_site AS
- SELECT feature.feature_id AS integration_excision_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'attI_site'::text) OR ((cvterm.name)::text = 'attP_site'::text)) OR ((cvterm.name)::text = 'attB_site'::text)) OR ((cvterm.name)::text = 'attL_site'::text)) OR ((cvterm.name)::text = 'attR_site'::text)) OR ((cvterm.name)::text = 'attC_site'::text)) OR ((cvterm.name)::text = 'attCtn_site'::text)) OR ((cvterm.name)::text = 'integration_excision_site'::text));
- --
- -- Name: integron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW integron AS
- SELECT feature.feature_id AS integron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'integron'::text);
- --
- -- Name: intein; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intein AS
- SELECT feature.feature_id AS intein_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'intein'::text);
- --
- -- Name: intein_containing; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intein_containing AS
- SELECT feature.feature_id AS intein_containing_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'intein_containing'::text);
- --
- -- Name: interband; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW interband AS
- SELECT feature.feature_id AS interband_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'interband'::text);
- --
- -- Name: interchromosomal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW interchromosomal AS
- SELECT feature.feature_id AS interchromosomal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'interchromosomal'::text);
- --
- -- Name: interchromosomal_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW interchromosomal_duplication AS
- SELECT feature.feature_id AS interchromosomal_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'interchromosomal_duplication'::text);
- --
- -- Name: interchromosomal_mutation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW interchromosomal_mutation AS
- SELECT feature.feature_id AS interchromosomal_mutation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((cvterm.name)::text = 'chromosomal_translocation'::text) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'translocation_element'::text)) OR ((cvterm.name)::text = 'Robertsonian_fusion'::text)) OR ((cvterm.name)::text = 'reciprocal_chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'cyclic_translocation'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_mutation'::text));
- --
- -- Name: interchromosomal_transposition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW interchromosomal_transposition AS
- SELECT feature.feature_id AS interchromosomal_transposition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text));
- --
- -- Name: intergenic_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intergenic_region AS
- SELECT feature.feature_id AS intergenic_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'intergenic_region'::text);
- --
- -- Name: intergenic_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intergenic_variant AS
- SELECT feature.feature_id AS intergenic_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'intergenic_variant'::text);
- --
- -- Name: interior_coding_exon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW interior_coding_exon AS
- SELECT feature.feature_id AS interior_coding_exon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'interior_coding_exon'::text);
- --
- -- Name: interior_exon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW interior_exon AS
- SELECT feature.feature_id AS interior_exon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'interior_exon'::text);
- --
- -- Name: interior_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW interior_intron AS
- SELECT feature.feature_id AS interior_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'interior_intron'::text);
- --
- -- Name: intermediate; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intermediate AS
- SELECT feature.feature_id AS intermediate_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'intermediate'::text);
- --
- -- Name: intermediate_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intermediate_element AS
- SELECT feature.feature_id AS intermediate_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'intermediate_element'::text);
- --
- -- Name: internal_eliminated_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW internal_eliminated_sequence AS
- SELECT feature.feature_id AS internal_eliminated_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'internal_eliminated_sequence'::text);
- --
- -- Name: internal_guide_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW internal_guide_sequence AS
- SELECT feature.feature_id AS internal_guide_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'internal_guide_sequence'::text);
- --
- -- Name: internal_ribosome_entry_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW internal_ribosome_entry_site AS
- SELECT feature.feature_id AS internal_ribosome_entry_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text) OR ((cvterm.name)::text = 'internal_ribosome_entry_site'::text));
- --
- -- Name: internal_shine_dalgarno_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW internal_shine_dalgarno_sequence AS
- SELECT feature.feature_id AS internal_shine_dalgarno_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text);
- --
- -- Name: internal_transcribed_spacer_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW internal_transcribed_spacer_region AS
- SELECT feature.feature_id AS internal_transcribed_spacer_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'internal_transcribed_spacer_region'::text);
- --
- -- Name: internal_utr; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW internal_utr AS
- SELECT feature.feature_id AS internal_utr_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'internal_UTR'::text);
- --
- -- Name: intrachromosomal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intrachromosomal AS
- SELECT feature.feature_id AS intrachromosomal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'intrachromosomal'::text);
- --
- -- Name: intrachromosomal_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intrachromosomal_duplication AS
- SELECT feature.feature_id AS intrachromosomal_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text));
- --
- -- Name: intrachromosomal_mutation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intrachromosomal_mutation AS
- SELECT feature.feature_id AS intrachromosomal_mutation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((cvterm.name)::text = 'chromosomal_deletion'::text) OR ((cvterm.name)::text = 'chromosomal_inversion'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'ring_chromosome'::text)) OR ((cvterm.name)::text = 'chromosome_fission'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_deficiency'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'pericentric_inversion'::text)) OR ((cvterm.name)::text = 'paracentric_inversion'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'intrachromosomal_mutation'::text));
- --
- -- Name: intrachromosomal_transposition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intrachromosomal_transposition AS
- SELECT feature.feature_id AS intrachromosomal_transposition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text));
- --
- -- Name: intramembrane_polypeptide_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intramembrane_polypeptide_region AS
- SELECT feature.feature_id AS intramembrane_polypeptide_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'membrane_peptide_loop'::text) OR ((cvterm.name)::text = 'transmembrane_polypeptide_region'::text)) OR ((cvterm.name)::text = 'intramembrane_polypeptide_region'::text));
- --
- -- Name: intrinsically_unstructured_polypeptide_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intrinsically_unstructured_polypeptide_region AS
- SELECT feature.feature_id AS intrinsically_unstructured_polypeptide_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'intrinsically_unstructured_polypeptide_region'::text);
- --
- -- Name: introgressed_chromosome_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW introgressed_chromosome_region AS
- SELECT feature.feature_id AS introgressed_chromosome_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'introgressed_chromosome_region'::text);
- --
- -- Name: intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intron AS
- SELECT feature.feature_id AS intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((cvterm.name)::text = 'five_prime_intron'::text) OR ((cvterm.name)::text = 'interior_intron'::text)) OR ((cvterm.name)::text = 'three_prime_intron'::text)) OR ((cvterm.name)::text = 'twintron'::text)) OR ((cvterm.name)::text = 'UTR_intron'::text)) OR ((cvterm.name)::text = 'autocatalytically_spliced_intron'::text)) OR ((cvterm.name)::text = 'spliceosomal_intron'::text)) OR ((cvterm.name)::text = 'mobile_intron'::text)) OR ((cvterm.name)::text = 'endonuclease_spliced_intron'::text)) OR ((cvterm.name)::text = 'five_prime_UTR_intron'::text)) OR ((cvterm.name)::text = 'three_prime_UTR_intron'::text)) OR ((cvterm.name)::text = 'group_I_intron'::text)) OR ((cvterm.name)::text = 'group_II_intron'::text)) OR ((cvterm.name)::text = 'group_III_intron'::text)) OR ((cvterm.name)::text = 'group_IIA_intron'::text)) OR ((cvterm.name)::text = 'group_IIB_intron'::text)) OR ((cvterm.name)::text = 'U2_intron'::text)) OR ((cvterm.name)::text = 'U12_intron'::text)) OR ((cvterm.name)::text = 'archaeal_intron'::text)) OR ((cvterm.name)::text = 'tRNA_intron'::text)) OR ((cvterm.name)::text = 'intron'::text));
- --
- -- Name: intron_domain; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intron_domain AS
- SELECT feature.feature_id AS intron_domain_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'internal_guide_sequence'::text) OR ((cvterm.name)::text = 'mirtron'::text)) OR ((cvterm.name)::text = 'intron_domain'::text));
- --
- -- Name: intron_gain; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intron_gain AS
- SELECT feature.feature_id AS intron_gain_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'intron_gain'::text);
- --
- -- Name: intron_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intron_variant AS
- SELECT feature.feature_id AS intron_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'splice_site_variant'::text) OR ((cvterm.name)::text = 'splice_acceptor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_5th_base_variant'::text)) OR ((cvterm.name)::text = 'intron_variant'::text));
- --
- -- Name: intronic_regulatory_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intronic_regulatory_region AS
- SELECT feature.feature_id AS intronic_regulatory_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'intronic_regulatory_region'::text);
- --
- -- Name: intronic_splice_enhancer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW intronic_splice_enhancer AS
- SELECT feature.feature_id AS intronic_splice_enhancer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'intronic_splice_enhancer'::text);
- --
- -- Name: invalidated; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW invalidated AS
- SELECT feature.feature_id AS invalidated_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'invalidated_by_chimeric_cDNA'::text) OR ((cvterm.name)::text = 'invalidated_by_genomic_contamination'::text)) OR ((cvterm.name)::text = 'invalidated_by_genomic_polyA_primed_cDNA'::text)) OR ((cvterm.name)::text = 'invalidated_by_partial_processing'::text)) OR ((cvterm.name)::text = 'invalidated'::text));
- --
- -- Name: invalidated_by_chimeric_cdna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW invalidated_by_chimeric_cdna AS
- SELECT feature.feature_id AS invalidated_by_chimeric_cdna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'invalidated_by_chimeric_cDNA'::text);
- --
- -- Name: invalidated_by_genomic_contamination; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW invalidated_by_genomic_contamination AS
- SELECT feature.feature_id AS invalidated_by_genomic_contamination_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'invalidated_by_genomic_contamination'::text);
- --
- -- Name: invalidated_by_genomic_polya_primed_cdna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW invalidated_by_genomic_polya_primed_cdna AS
- SELECT feature.feature_id AS invalidated_by_genomic_polya_primed_cdna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'invalidated_by_genomic_polyA_primed_cDNA'::text);
- --
- -- Name: invalidated_by_partial_processing; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW invalidated_by_partial_processing AS
- SELECT feature.feature_id AS invalidated_by_partial_processing_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'invalidated_by_partial_processing'::text);
- --
- -- Name: invalidated_cdna_clone; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW invalidated_cdna_clone AS
- SELECT feature.feature_id AS invalidated_cdna_clone_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'chimeric_cDNA_clone'::text) OR ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'invalidated_cDNA_clone'::text));
- --
- -- Name: inversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inversion AS
- SELECT feature.feature_id AS inversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inversion'::text);
- --
- -- Name: inversion_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inversion_attribute AS
- SELECT feature.feature_id AS inversion_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'pericentric'::text) OR ((cvterm.name)::text = 'paracentric'::text)) OR ((cvterm.name)::text = 'inversion_attribute'::text));
- --
- -- Name: inversion_breakpoint; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inversion_breakpoint AS
- SELECT feature.feature_id AS inversion_breakpoint_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inversion_breakpoint'::text);
- --
- -- Name: inversion_cum_translocation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inversion_cum_translocation AS
- SELECT feature.feature_id AS inversion_cum_translocation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text));
- --
- -- Name: inversion_derived_aneuploid_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inversion_derived_aneuploid_chromosome AS
- SELECT feature.feature_id AS inversion_derived_aneuploid_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inversion_derived_aneuploid_chromosome'::text);
- --
- -- Name: inversion_derived_bipartite_deficiency; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inversion_derived_bipartite_deficiency AS
- SELECT feature.feature_id AS inversion_derived_bipartite_deficiency_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inversion_derived_bipartite_deficiency'::text);
- --
- -- Name: inversion_derived_bipartite_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inversion_derived_bipartite_duplication AS
- SELECT feature.feature_id AS inversion_derived_bipartite_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text);
- --
- -- Name: inversion_derived_deficiency_plus_aneuploid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inversion_derived_deficiency_plus_aneuploid AS
- SELECT feature.feature_id AS inversion_derived_deficiency_plus_aneuploid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inversion_derived_deficiency_plus_aneuploid'::text);
- --
- -- Name: inversion_derived_deficiency_plus_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inversion_derived_deficiency_plus_duplication AS
- SELECT feature.feature_id AS inversion_derived_deficiency_plus_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text);
- --
- -- Name: inversion_derived_duplication_plus_aneuploid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inversion_derived_duplication_plus_aneuploid AS
- SELECT feature.feature_id AS inversion_derived_duplication_plus_aneuploid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text);
- --
- -- Name: inversion_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inversion_site AS
- SELECT feature.feature_id AS inversion_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'FRT_site'::text) OR ((cvterm.name)::text = 'inversion_site'::text));
- --
- -- Name: inversion_site_part; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inversion_site_part AS
- SELECT feature.feature_id AS inversion_site_part_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'IRLinv_site'::text) OR ((cvterm.name)::text = 'IRRinv_site'::text)) OR ((cvterm.name)::text = 'inversion_site_part'::text));
- --
- -- Name: invert_inter_transposition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW invert_inter_transposition AS
- SELECT feature.feature_id AS invert_inter_transposition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text);
- --
- -- Name: invert_intra_transposition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW invert_intra_transposition AS
- SELECT feature.feature_id AS invert_intra_transposition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text);
- --
- -- Name: inverted; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inverted AS
- SELECT feature.feature_id AS inverted_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inverted'::text);
- --
- -- Name: inverted_insertional_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inverted_insertional_duplication AS
- SELECT feature.feature_id AS inverted_insertional_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inverted_insertional_duplication'::text);
- --
- -- Name: inverted_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inverted_repeat AS
- SELECT feature.feature_id AS inverted_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'terminal_inverted_repeat'::text) OR ((cvterm.name)::text = 'five_prime_terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'three_prime_terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'inverted_repeat'::text));
- --
- -- Name: inverted_ring_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inverted_ring_chromosome AS
- SELECT feature.feature_id AS inverted_ring_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inverted_ring_chromosome'::text);
- --
- -- Name: inverted_tandem_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW inverted_tandem_duplication AS
- SELECT feature.feature_id AS inverted_tandem_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'inverted_tandem_duplication'::text);
- --
- -- Name: irlinv_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW irlinv_site AS
- SELECT feature.feature_id AS irlinv_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'IRLinv_site'::text);
- --
- -- Name: iron_responsive_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW iron_responsive_element AS
- SELECT feature.feature_id AS iron_responsive_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'iron_responsive_element'::text);
- --
- -- Name: irrinv_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW irrinv_site AS
- SELECT feature.feature_id AS irrinv_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'IRRinv_site'::text);
- --
- -- Name: isoleucine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW isoleucine AS
- SELECT feature.feature_id AS isoleucine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'isoleucine'::text);
- --
- -- Name: isoleucine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW isoleucine_trna_primary_transcript AS
- SELECT feature.feature_id AS isoleucine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'isoleucine_tRNA_primary_transcript'::text);
- --
- -- Name: isoleucyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW isoleucyl_trna AS
- SELECT feature.feature_id AS isoleucyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'isoleucyl_tRNA'::text);
- --
- -- Name: isowyosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW isowyosine AS
- SELECT feature.feature_id AS isowyosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'isowyosine'::text);
- --
- -- Name: isre; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW isre AS
- SELECT feature.feature_id AS isre_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'ISRE'::text);
- --
- -- Name: j_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW j_c_cluster AS
- SELECT feature.feature_id AS j_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'J_C_cluster'::text);
- --
- -- Name: j_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW j_cluster AS
- SELECT feature.feature_id AS j_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'J_cluster'::text);
- --
- -- Name: j_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW j_gene AS
- SELECT feature.feature_id AS j_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'J_gene'::text);
- --
- -- Name: j_gene_recombination_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW j_gene_recombination_feature AS
- SELECT feature.feature_id AS j_gene_recombination_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'J_gene_recombination_feature'::text);
- --
- -- Name: j_heptamer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW j_heptamer AS
- SELECT feature.feature_id AS j_heptamer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'J_heptamer'::text);
- --
- -- Name: j_nonamer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW j_nonamer AS
- SELECT feature.feature_id AS j_nonamer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'J_nonamer'::text);
- --
- -- Name: j_spacer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW j_spacer AS
- SELECT feature.feature_id AS j_spacer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'J_spacer'::text);
- --
- -- Name: junction; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW junction AS
- SELECT feature.feature_id AS junction_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((cvterm.name)::text = 'clone_insert_end'::text) OR ((cvterm.name)::text = 'clone_insert_start'::text)) OR ((cvterm.name)::text = 'exon_junction'::text)) OR ((cvterm.name)::text = 'insertion_site'::text)) OR ((cvterm.name)::text = 'polyA_site'::text)) OR ((cvterm.name)::text = 'deletion_junction'::text)) OR ((cvterm.name)::text = 'chromosome_breakpoint'::text)) OR ((cvterm.name)::text = 'splice_junction'::text)) OR ((cvterm.name)::text = 'trans_splice_junction'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_cleavage_junction'::text)) OR ((cvterm.name)::text = 'transposable_element_insertion_site'::text)) OR ((cvterm.name)::text = 'inversion_breakpoint'::text)) OR ((cvterm.name)::text = 'translocation_breakpoint'::text)) OR ((cvterm.name)::text = 'insertion_breakpoint'::text)) OR ((cvterm.name)::text = 'deletion_breakpoint'::text)) OR ((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_junction'::text)) OR ((cvterm.name)::text = 'single_strand_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'five_prime_restriction_enzyme_junction'::text)) OR ((cvterm.name)::text = 'three_prime_restriction_enzyme_junction'::text)) OR ((cvterm.name)::text = 'junction'::text));
- --
- -- Name: k_turn_rna_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW k_turn_rna_motif AS
- SELECT feature.feature_id AS k_turn_rna_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'K_turn_RNA_motif'::text);
- --
- -- Name: kinetoplast; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW kinetoplast AS
- SELECT feature.feature_id AS kinetoplast_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'kinetoplast'::text);
- --
- -- Name: kinetoplast_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW kinetoplast_gene AS
- SELECT feature.feature_id AS kinetoplast_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'maxicircle_gene'::text) OR ((cvterm.name)::text = 'minicircle_gene'::text)) OR ((cvterm.name)::text = 'cryptogene'::text)) OR ((cvterm.name)::text = 'kinetoplast_gene'::text));
- --
- -- Name: kozak_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW kozak_sequence AS
- SELECT feature.feature_id AS kozak_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'kozak_sequence'::text);
- --
- -- Name: laevosynaptic_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW laevosynaptic_chromosome AS
- SELECT feature.feature_id AS laevosynaptic_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'laevosynaptic_chromosome'::text);
- --
- -- Name: lambda_vector; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW lambda_vector AS
- SELECT feature.feature_id AS lambda_vector_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'lambda_vector'::text);
- --
- -- Name: large_subunit_rrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW large_subunit_rrna AS
- SELECT feature.feature_id AS large_subunit_rrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'rRNA_5_8S'::text) OR ((cvterm.name)::text = 'rRNA_5S'::text)) OR ((cvterm.name)::text = 'rRNA_28S'::text)) OR ((cvterm.name)::text = 'rRNA_23S'::text)) OR ((cvterm.name)::text = 'rRNA_25S'::text)) OR ((cvterm.name)::text = 'rRNA_21S'::text)) OR ((cvterm.name)::text = 'large_subunit_rRNA'::text));
- --
- -- Name: left_handed_peptide_helix; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW left_handed_peptide_helix AS
- SELECT feature.feature_id AS left_handed_peptide_helix_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'left_handed_peptide_helix'::text);
- --
- -- Name: lethal_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW lethal_variant AS
- SELECT feature.feature_id AS lethal_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'lethal_variant'::text);
- --
- -- Name: leucine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW leucine AS
- SELECT feature.feature_id AS leucine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'leucine'::text);
- --
- -- Name: leucine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW leucine_trna_primary_transcript AS
- SELECT feature.feature_id AS leucine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'leucine_tRNA_primary_transcript'::text);
- --
- -- Name: leucoplast_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW leucoplast_chromosome AS
- SELECT feature.feature_id AS leucoplast_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'leucoplast_chromosome'::text);
- --
- -- Name: leucoplast_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW leucoplast_gene AS
- SELECT feature.feature_id AS leucoplast_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'leucoplast_gene'::text);
- --
- -- Name: leucoplast_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW leucoplast_sequence AS
- SELECT feature.feature_id AS leucoplast_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'leucoplast_sequence'::text);
- --
- -- Name: leucyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW leucyl_trna AS
- SELECT feature.feature_id AS leucyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'leucyl_tRNA'::text);
- --
- -- Name: level_of_transcript_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW level_of_transcript_variant AS
- SELECT feature.feature_id AS level_of_transcript_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'decreased_transcript_level_variant'::text) OR ((cvterm.name)::text = 'increased_transcript_level_variant'::text)) OR ((cvterm.name)::text = 'level_of_transcript_variant'::text));
- --
- -- Name: ligand_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ligand_binding_site AS
- SELECT feature.feature_id AS ligand_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'polypeptide_ligand_contact'::text) OR ((cvterm.name)::text = 'ligand_binding_site'::text));
- --
- -- Name: ligation_based_read; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ligation_based_read AS
- SELECT feature.feature_id AS ligation_based_read_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'ligation_based_read'::text);
- --
- -- Name: lincrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW lincrna AS
- SELECT feature.feature_id AS lincrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'lincRNA'::text);
- --
- -- Name: lincrna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW lincrna_gene AS
- SELECT feature.feature_id AS lincrna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'lincRNA_gene'::text);
- --
- -- Name: line_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW line_element AS
- SELECT feature.feature_id AS line_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'LINE_element'::text);
- --
- -- Name: linear; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW linear AS
- SELECT feature.feature_id AS linear_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'linear'::text);
- --
- -- Name: linear_double_stranded_dna_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW linear_double_stranded_dna_chromosome AS
- SELECT feature.feature_id AS linear_double_stranded_dna_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'linear_double_stranded_DNA_chromosome'::text);
- --
- -- Name: linear_double_stranded_rna_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW linear_double_stranded_rna_chromosome AS
- SELECT feature.feature_id AS linear_double_stranded_rna_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text);
- --
- -- Name: linear_single_stranded_dna_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW linear_single_stranded_dna_chromosome AS
- SELECT feature.feature_id AS linear_single_stranded_dna_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'linear_single_stranded_DNA_chromosome'::text);
- --
- -- Name: linear_single_stranded_rna_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW linear_single_stranded_rna_chromosome AS
- SELECT feature.feature_id AS linear_single_stranded_rna_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'linear_single_stranded_RNA_chromosome'::text);
- --
- -- Name: linkage_group; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW linkage_group AS
- SELECT feature.feature_id AS linkage_group_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'linkage_group'::text);
- --
- -- Name: lipoprotein_signal_peptide; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW lipoprotein_signal_peptide AS
- SELECT feature.feature_id AS lipoprotein_signal_peptide_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'lipoprotein_signal_peptide'::text);
- --
- -- Name: lna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW lna AS
- SELECT feature.feature_id AS lna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'LNA'::text);
- --
- -- Name: lna_oligo; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW lna_oligo AS
- SELECT feature.feature_id AS lna_oligo_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'LNA_oligo'::text);
- --
- -- Name: locus_control_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW locus_control_region AS
- SELECT feature.feature_id AS locus_control_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'locus_control_region'::text);
- --
- -- Name: long_terminal_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW long_terminal_repeat AS
- SELECT feature.feature_id AS long_terminal_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'five_prime_LTR'::text) OR ((cvterm.name)::text = 'three_prime_LTR'::text)) OR ((cvterm.name)::text = 'solo_LTR'::text)) OR ((cvterm.name)::text = 'long_terminal_repeat'::text));
- --
- -- Name: loss_of_heterozygosity; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW loss_of_heterozygosity AS
- SELECT feature.feature_id AS loss_of_heterozygosity_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'loss_of_heterozygosity'::text);
- --
- -- Name: low_complexity; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW low_complexity AS
- SELECT feature.feature_id AS low_complexity_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'low_complexity'::text);
- --
- -- Name: low_complexity_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW low_complexity_region AS
- SELECT feature.feature_id AS low_complexity_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'low_complexity_region'::text);
- --
- -- Name: loxp_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW loxp_site AS
- SELECT feature.feature_id AS loxp_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'loxP_site'::text);
- --
- -- Name: ltr_component; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ltr_component AS
- SELECT feature.feature_id AS ltr_component_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((cvterm.name)::text = 'U5_LTR_region'::text) OR ((cvterm.name)::text = 'R_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_LTR_region'::text)) OR ((cvterm.name)::text = 'three_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'five_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'LTR_component'::text));
- --
- -- Name: ltr_retrotransposon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ltr_retrotransposon AS
- SELECT feature.feature_id AS ltr_retrotransposon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'LTR_retrotransposon'::text);
- --
- -- Name: lysidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW lysidine AS
- SELECT feature.feature_id AS lysidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'lysidine'::text);
- --
- -- Name: lysine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW lysine AS
- SELECT feature.feature_id AS lysine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'lysine'::text);
- --
- -- Name: lysine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW lysine_trna_primary_transcript AS
- SELECT feature.feature_id AS lysine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'lysine_tRNA_primary_transcript'::text);
- --
- -- Name: lysosomal_localization_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW lysosomal_localization_signal AS
- SELECT feature.feature_id AS lysosomal_localization_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'lysosomal_localization_signal'::text);
- --
- -- Name: lysyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW lysyl_trna AS
- SELECT feature.feature_id AS lysyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'lysyl_tRNA'::text);
- --
- -- Name: macronuclear_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW macronuclear_chromosome AS
- SELECT feature.feature_id AS macronuclear_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'macronuclear_chromosome'::text);
- --
- -- Name: macronuclear_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW macronuclear_sequence AS
- SELECT feature.feature_id AS macronuclear_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'macronuclear_sequence'::text);
- --
- -- Name: macronucleus_destined_segment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW macronucleus_destined_segment AS
- SELECT feature.feature_id AS macronucleus_destined_segment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'macronucleus_destined_segment'::text);
- --
- -- Name: major_tss; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW major_tss AS
- SELECT feature.feature_id AS major_tss_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'major_TSS'::text);
- --
- -- Name: mannosyl_queuosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mannosyl_queuosine AS
- SELECT feature.feature_id AS mannosyl_queuosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mannosyl_queuosine'::text);
- --
- -- Name: match; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW match AS
- SELECT feature.feature_id AS match_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((cvterm.name)::text = 'nucleotide_match'::text) OR ((cvterm.name)::text = 'protein_match'::text)) OR ((cvterm.name)::text = 'expressed_sequence_match'::text)) OR ((cvterm.name)::text = 'cross_genome_match'::text)) OR ((cvterm.name)::text = 'translated_nucleotide_match'::text)) OR ((cvterm.name)::text = 'primer_match'::text)) OR ((cvterm.name)::text = 'EST_match'::text)) OR ((cvterm.name)::text = 'cDNA_match'::text)) OR ((cvterm.name)::text = 'UST_match'::text)) OR ((cvterm.name)::text = 'RST_match'::text)) OR ((cvterm.name)::text = 'match'::text));
- --
- -- Name: match_part; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW match_part AS
- SELECT feature.feature_id AS match_part_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'match_part'::text);
- --
- -- Name: maternal_uniparental_disomy; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW maternal_uniparental_disomy AS
- SELECT feature.feature_id AS maternal_uniparental_disomy_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'maternal_uniparental_disomy'::text);
- --
- -- Name: maternal_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW maternal_variant AS
- SELECT feature.feature_id AS maternal_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'maternal_variant'::text);
- --
- -- Name: maternally_imprinted; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW maternally_imprinted AS
- SELECT feature.feature_id AS maternally_imprinted_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'maternally_imprinted'::text);
- --
- -- Name: maternally_imprinted_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW maternally_imprinted_gene AS
- SELECT feature.feature_id AS maternally_imprinted_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'maternally_imprinted_gene'::text);
- --
- -- Name: mathematically_defined_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mathematically_defined_repeat AS
- SELECT feature.feature_id AS mathematically_defined_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mathematically_defined_repeat'::text);
- --
- -- Name: mating_type_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mating_type_region AS
- SELECT feature.feature_id AS mating_type_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mating_type_region'::text);
- --
- -- Name: matrix_attachment_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW matrix_attachment_site AS
- SELECT feature.feature_id AS matrix_attachment_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'matrix_attachment_site'::text);
- --
- -- Name: mature_mirna_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mature_mirna_variant AS
- SELECT feature.feature_id AS mature_mirna_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mature_miRNA_variant'::text);
- --
- -- Name: mature_protein_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mature_protein_region AS
- SELECT feature.feature_id AS mature_protein_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'active_peptide'::text) OR ((cvterm.name)::text = 'mature_protein_region'::text));
- --
- -- Name: mature_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mature_transcript AS
- SELECT feature.feature_id AS mature_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'mRNA'::text) OR ((cvterm.name)::text = 'ncRNA'::text)) OR ((cvterm.name)::text = 'mRNA_with_frameshift'::text)) OR ((cvterm.name)::text = 'monocistronic_mRNA'::text)) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'exemplar_mRNA'::text)) OR ((cvterm.name)::text = 'capped_mRNA'::text)) OR ((cvterm.name)::text = 'polyadenylated_mRNA'::text)) OR ((cvterm.name)::text = 'trans_spliced_mRNA'::text)) OR ((cvterm.name)::text = 'edited_mRNA'::text)) OR ((cvterm.name)::text = 'consensus_mRNA'::text)) OR ((cvterm.name)::text = 'recoded_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_2_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_codon_redefinition'::text)) OR ((cvterm.name)::text = 'scRNA'::text)) OR ((cvterm.name)::text = 'rRNA'::text)) OR ((cvterm.name)::text = 'tRNA'::text)) OR ((cvterm.name)::text = 'snRNA'::text)) OR ((cvterm.name)::text = 'snoRNA'::text)) OR ((cvterm.name)::text = 'small_regulatory_ncRNA'::text)) OR ((cvterm.name)::text = 'RNase_MRP_RNA'::text)) OR ((cvterm.name)::text = 'RNase_P_RNA'::text)) OR ((cvterm.name)::text = 'telomerase_RNA'::text)) OR ((cvterm.name)::text = 'vault_RNA'::text)) OR ((cvterm.name)::text = 'Y_RNA'::text)) OR ((cvterm.name)::text = 'rasiRNA'::text)) OR ((cvterm.name)::text = 'SRP_RNA'::text)) OR ((cvterm.name)::text = 'guide_RNA'::text)) OR ((cvterm.name)::text = 'antisense_RNA'::text)) OR ((cvterm.name)::text = 'siRNA'::text)) OR ((cvterm.name)::text = 'stRNA'::text)) OR ((cvterm.name)::text = 'class_II_RNA'::text)) OR ((cvterm.name)::text = 'class_I_RNA'::text)) OR ((cvterm.name)::text = 'piRNA'::text)) OR ((cvterm.name)::text = 'lincRNA'::text)) OR ((cvterm.name)::text = 'tasiRNA'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_RNA'::text)) OR ((cvterm.name)::text = 'small_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'large_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'rRNA_18S'::text)) OR ((cvterm.name)::text = 'rRNA_16S'::text)) OR ((cvterm.name)::text = 'rRNA_5_8S'::text)) OR ((cvterm.name)::text = 'rRNA_5S'::text)) OR ((cvterm.name)::text = 'rRNA_28S'::text)) OR ((cvterm.name)::text = 'rRNA_23S'::text)) OR ((cvterm.name)::text = 'rRNA_25S'::text)) OR ((cvterm.name)::text = 'rRNA_21S'::text)) OR ((cvterm.name)::text = 'alanyl_tRNA'::text)) OR ((cvterm.name)::text = 'asparaginyl_tRNA'::text)) OR ((cvterm.name)::text = 'aspartyl_tRNA'::text)) OR ((cvterm.name)::text = 'cysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutaminyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutamyl_tRNA'::text)) OR ((cvterm.name)::text = 'glycyl_tRNA'::text)) OR ((cvterm.name)::text = 'histidyl_tRNA'::text)) OR ((cvterm.name)::text = 'isoleucyl_tRNA'::text)) OR ((cvterm.name)::text = 'leucyl_tRNA'::text)) OR ((cvterm.name)::text = 'lysyl_tRNA'::text)) OR ((cvterm.name)::text = 'methionyl_tRNA'::text)) OR ((cvterm.name)::text = 'phenylalanyl_tRNA'::text)) OR ((cvterm.name)::text = 'prolyl_tRNA'::text)) OR ((cvterm.name)::text = 'seryl_tRNA'::text)) OR ((cvterm.name)::text = 'threonyl_tRNA'::text)) OR ((cvterm.name)::text = 'tryptophanyl_tRNA'::text)) OR ((cvterm.name)::text = 'tyrosyl_tRNA'::text)) OR ((cvterm.name)::text = 'valyl_tRNA'::text)) OR ((cvterm.name)::text = 'pyrrolysyl_tRNA'::text)) OR ((cvterm.name)::text = 'arginyl_tRNA'::text)) OR ((cvterm.name)::text = 'selenocysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'U1_snRNA'::text)) OR ((cvterm.name)::text = 'U2_snRNA'::text)) OR ((cvterm.name)::text = 'U4_snRNA'::text)) OR ((cvterm.name)::text = 'U4atac_snRNA'::text)) OR ((cvterm.name)::text = 'U5_snRNA'::text)) OR ((cvterm.name)::text = 'U6_snRNA'::text)) OR ((cvterm.name)::text = 'U6atac_snRNA'::text)) OR ((cvterm.name)::text = 'U11_snRNA'::text)) OR ((cvterm.name)::text = 'U12_snRNA'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA'::text)) OR ((cvterm.name)::text = 'U14_snoRNA'::text)) OR ((cvterm.name)::text = 'U3_snoRNA'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'pseudouridylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'miRNA'::text)) OR ((cvterm.name)::text = 'RNA_6S'::text)) OR ((cvterm.name)::text = 'CsrB_RsmB_RNA'::text)) OR ((cvterm.name)::text = 'DsrA_RNA'::text)) OR ((cvterm.name)::text = 'OxyS_RNA'::text)) OR ((cvterm.name)::text = 'RprA_RNA'::text)) OR ((cvterm.name)::text = 'RRE_RNA'::text)) OR ((cvterm.name)::text = 'spot_42_RNA'::text)) OR ((cvterm.name)::text = 'tmRNA'::text)) OR ((cvterm.name)::text = 'GcvB_RNA'::text)) OR ((cvterm.name)::text = 'MicF_RNA'::text)) OR ((cvterm.name)::text = 'mature_transcript'::text));
- --
- -- Name: mature_transcript_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mature_transcript_region AS
- SELECT feature.feature_id AS mature_transcript_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'mRNA_region'::text) OR ((cvterm.name)::text = 'tmRNA_region'::text)) OR ((cvterm.name)::text = 'guide_RNA_region'::text)) OR ((cvterm.name)::text = 'tRNA_region'::text)) OR ((cvterm.name)::text = 'riboswitch'::text)) OR ((cvterm.name)::text = 'ribosome_entry_site'::text)) OR ((cvterm.name)::text = 'UTR'::text)) OR ((cvterm.name)::text = 'CDS'::text)) OR ((cvterm.name)::text = 'five_prime_open_reading_frame'::text)) OR ((cvterm.name)::text = 'UTR_region'::text)) OR ((cvterm.name)::text = 'CDS_region'::text)) OR ((cvterm.name)::text = 'translational_frameshift'::text)) OR ((cvterm.name)::text = 'recoding_stimulatory_region'::text)) OR ((cvterm.name)::text = 'internal_ribosome_entry_site'::text)) OR ((cvterm.name)::text = 'Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'kozak_sequence'::text)) OR ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'five_prime_UTR'::text)) OR ((cvterm.name)::text = 'three_prime_UTR'::text)) OR ((cvterm.name)::text = 'internal_UTR'::text)) OR ((cvterm.name)::text = 'untranslated_region_polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'edited_CDS'::text)) OR ((cvterm.name)::text = 'CDS_fragment'::text)) OR ((cvterm.name)::text = 'CDS_independently_known'::text)) OR ((cvterm.name)::text = 'CDS_predicted'::text)) OR ((cvterm.name)::text = 'orphan_CDS'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_sequence_similarity_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_domain_match_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_EST_or_cDNA_data'::text)) OR ((cvterm.name)::text = 'upstream_AUG_codon'::text)) OR ((cvterm.name)::text = 'AU_rich_element'::text)) OR ((cvterm.name)::text = 'Bruno_response_element'::text)) OR ((cvterm.name)::text = 'iron_responsive_element'::text)) OR ((cvterm.name)::text = 'coding_start'::text)) OR ((cvterm.name)::text = 'coding_end'::text)) OR ((cvterm.name)::text = 'codon'::text)) OR ((cvterm.name)::text = 'recoded_codon'::text)) OR ((cvterm.name)::text = 'start_codon'::text)) OR ((cvterm.name)::text = 'stop_codon'::text)) OR ((cvterm.name)::text = 'stop_codon_read_through'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'non_canonical_start_codon'::text)) OR ((cvterm.name)::text = 'four_bp_start_codon'::text)) OR ((cvterm.name)::text = 'CTG_start_codon'::text)) OR ((cvterm.name)::text = 'plus_1_translational_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_translational_frameshift'::text)) OR ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'SECIS_element'::text)) OR ((cvterm.name)::text = 'three_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'five_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'stop_codon_signal'::text)) OR ((cvterm.name)::text = 'three_prime_stem_loop_structure'::text)) OR ((cvterm.name)::text = 'flanking_three_prime_quadruplet_recoding_signal'::text)) OR ((cvterm.name)::text = 'three_prime_repeat_recoding_signal'::text)) OR ((cvterm.name)::text = 'distant_three_prime_recoding_signal'::text)) OR ((cvterm.name)::text = 'UAG_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UAA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UGA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'tmRNA_coding_piece'::text)) OR ((cvterm.name)::text = 'tmRNA_acceptor_piece'::text)) OR ((cvterm.name)::text = 'anchor_region'::text)) OR ((cvterm.name)::text = 'template_region'::text)) OR ((cvterm.name)::text = 'anticodon_loop'::text)) OR ((cvterm.name)::text = 'anticodon'::text)) OR ((cvterm.name)::text = 'CCA_tail'::text)) OR ((cvterm.name)::text = 'DHU_loop'::text)) OR ((cvterm.name)::text = 'T_loop'::text)) OR ((cvterm.name)::text = 'mature_transcript_region'::text));
- --
- -- Name: maxicircle; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW maxicircle AS
- SELECT feature.feature_id AS maxicircle_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'maxicircle'::text);
- --
- -- Name: maxicircle_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW maxicircle_gene AS
- SELECT feature.feature_id AS maxicircle_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'cryptogene'::text) OR ((cvterm.name)::text = 'maxicircle_gene'::text));
- --
- -- Name: member_of_regulon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW member_of_regulon AS
- SELECT feature.feature_id AS member_of_regulon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'member_of_regulon'::text);
- --
- -- Name: membrane_peptide_loop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW membrane_peptide_loop AS
- SELECT feature.feature_id AS membrane_peptide_loop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'membrane_peptide_loop'::text);
- --
- -- Name: membrane_structure; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW membrane_structure AS
- SELECT feature.feature_id AS membrane_structure_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'membrane_structure'::text);
- --
- -- Name: metabolic_island; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW metabolic_island AS
- SELECT feature.feature_id AS metabolic_island_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'metabolic_island'::text);
- --
- -- Name: metal_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW metal_binding_site AS
- SELECT feature.feature_id AS metal_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((cvterm.name)::text = 'polypeptide_metal_contact'::text) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'metal_binding_site'::text));
- --
- -- Name: methionine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW methionine AS
- SELECT feature.feature_id AS methionine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'methionine'::text);
- --
- -- Name: methionine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW methionine_trna_primary_transcript AS
- SELECT feature.feature_id AS methionine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'methionine_tRNA_primary_transcript'::text);
- --
- -- Name: methionyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW methionyl_trna AS
- SELECT feature.feature_id AS methionyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'methionyl_tRNA'::text);
- --
- -- Name: methylated_a; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW methylated_a AS
- SELECT feature.feature_id AS methylated_a_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'methylated_A'::text);
- --
- -- Name: methylated_base_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW methylated_base_feature AS
- SELECT feature.feature_id AS methylated_base_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'methylated_C'::text) OR ((cvterm.name)::text = 'methylated_A'::text)) OR ((cvterm.name)::text = 'methylated_base_feature'::text));
- --
- -- Name: methylated_c; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW methylated_c AS
- SELECT feature.feature_id AS methylated_c_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'methylated_C'::text);
- --
- -- Name: methylation_guide_snorna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW methylation_guide_snorna AS
- SELECT feature.feature_id AS methylation_guide_snorna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'methylation_guide_snoRNA'::text);
- --
- -- Name: methylation_guide_snorna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW methylation_guide_snorna_primary_transcript AS
- SELECT feature.feature_id AS methylation_guide_snorna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'methylation_guide_snoRNA_primary_transcript'::text);
- --
- -- Name: methylinosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW methylinosine AS
- SELECT feature.feature_id AS methylinosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'methylinosine'::text);
- --
- -- Name: methylwyosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW methylwyosine AS
- SELECT feature.feature_id AS methylwyosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'methylwyosine'::text);
- --
- -- Name: micf_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW micf_rna AS
- SELECT feature.feature_id AS micf_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'MicF_RNA'::text);
- --
- -- Name: microarray_oligo; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW microarray_oligo AS
- SELECT feature.feature_id AS microarray_oligo_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'microarray_oligo'::text);
- --
- -- Name: micronuclear_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW micronuclear_chromosome AS
- SELECT feature.feature_id AS micronuclear_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'micronuclear_chromosome'::text);
- --
- -- Name: micronuclear_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW micronuclear_sequence AS
- SELECT feature.feature_id AS micronuclear_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'micronuclear_sequence'::text);
- --
- -- Name: microsatellite; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW microsatellite AS
- SELECT feature.feature_id AS microsatellite_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'dinucleotide_repeat_microsatellite_feature'::text) OR ((cvterm.name)::text = 'trinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'tetranucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'microsatellite'::text));
- --
- -- Name: mini_exon_donor_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mini_exon_donor_rna AS
- SELECT feature.feature_id AS mini_exon_donor_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mini_exon_donor_RNA'::text);
- --
- -- Name: mini_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mini_gene AS
- SELECT feature.feature_id AS mini_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'rescue_mini_gene'::text) OR ((cvterm.name)::text = 'mini_gene'::text));
- --
- -- Name: minicircle; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW minicircle AS
- SELECT feature.feature_id AS minicircle_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'minicircle'::text);
- --
- -- Name: minicircle_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW minicircle_gene AS
- SELECT feature.feature_id AS minicircle_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'minicircle_gene'::text);
- --
- -- Name: minisatellite; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW minisatellite AS
- SELECT feature.feature_id AS minisatellite_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'minisatellite'::text);
- --
- -- Name: minor_tss; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW minor_tss AS
- SELECT feature.feature_id AS minor_tss_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'minor_TSS'::text);
- --
- -- Name: minus_10_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW minus_10_signal AS
- SELECT feature.feature_id AS minus_10_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'minus_10_signal'::text);
- --
- -- Name: minus_12_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW minus_12_signal AS
- SELECT feature.feature_id AS minus_12_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'minus_12_signal'::text);
- --
- -- Name: minus_1_frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW minus_1_frameshift AS
- SELECT feature.feature_id AS minus_1_frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'minus_1_frameshift'::text);
- --
- -- Name: minus_1_frameshift_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW minus_1_frameshift_variant AS
- SELECT feature.feature_id AS minus_1_frameshift_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'minus_1_frameshift_variant'::text);
- --
- -- Name: minus_1_translationally_frameshifted; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW minus_1_translationally_frameshifted AS
- SELECT feature.feature_id AS minus_1_translationally_frameshifted_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'minus_1_translationally_frameshifted'::text);
- --
- -- Name: minus_24_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW minus_24_signal AS
- SELECT feature.feature_id AS minus_24_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'minus_24_signal'::text);
- --
- -- Name: minus_2_frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW minus_2_frameshift AS
- SELECT feature.feature_id AS minus_2_frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'minus_2_frameshift'::text);
- --
- -- Name: minus_2_frameshift_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW minus_2_frameshift_variant AS
- SELECT feature.feature_id AS minus_2_frameshift_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'minus_2_frameshift_variant'::text);
- --
- -- Name: minus_35_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW minus_35_signal AS
- SELECT feature.feature_id AS minus_35_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'minus_35_signal'::text);
- --
- -- Name: mirna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mirna AS
- SELECT feature.feature_id AS mirna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'miRNA'::text);
- --
- -- Name: mirna_antiguide; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mirna_antiguide AS
- SELECT feature.feature_id AS mirna_antiguide_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'miRNA_antiguide'::text);
- --
- -- Name: mirna_encoding; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mirna_encoding AS
- SELECT feature.feature_id AS mirna_encoding_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'miRNA_encoding'::text);
- --
- -- Name: mirna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mirna_gene AS
- SELECT feature.feature_id AS mirna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'miRNA_gene'::text);
- --
- -- Name: mirna_loop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mirna_loop AS
- SELECT feature.feature_id AS mirna_loop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'miRNA_loop'::text);
- --
- -- Name: mirna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mirna_primary_transcript AS
- SELECT feature.feature_id AS mirna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'stRNA_primary_transcript'::text) OR ((cvterm.name)::text = 'miRNA_primary_transcript'::text));
- --
- -- Name: mirna_primary_transcript_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mirna_primary_transcript_region AS
- SELECT feature.feature_id AS mirna_primary_transcript_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'pre_miRNA'::text) OR ((cvterm.name)::text = 'miRNA_stem'::text)) OR ((cvterm.name)::text = 'miRNA_loop'::text)) OR ((cvterm.name)::text = 'miRNA_antiguide'::text)) OR ((cvterm.name)::text = 'miRNA_primary_transcript_region'::text));
- --
- -- Name: mirna_stem; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mirna_stem AS
- SELECT feature.feature_id AS mirna_stem_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'miRNA_stem'::text);
- --
- -- Name: mirna_target_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mirna_target_site AS
- SELECT feature.feature_id AS mirna_target_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'miRNA_target_site'::text);
- --
- -- Name: mirtron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mirtron AS
- SELECT feature.feature_id AS mirtron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mirtron'::text);
- --
- -- Name: missense_codon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW missense_codon AS
- SELECT feature.feature_id AS missense_codon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'conservative_missense_codon'::text) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'missense_codon'::text));
- --
- -- Name: mite; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mite AS
- SELECT feature.feature_id AS mite_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'MITE'::text);
- --
- -- Name: mitochondrial_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mitochondrial_chromosome AS
- SELECT feature.feature_id AS mitochondrial_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mitochondrial_chromosome'::text);
- --
- -- Name: mitochondrial_dna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mitochondrial_dna AS
- SELECT feature.feature_id AS mitochondrial_dna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mitochondrial_DNA'::text);
- --
- -- Name: mitochondrial_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mitochondrial_sequence AS
- SELECT feature.feature_id AS mitochondrial_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'mitochondrial_DNA'::text) OR ((cvterm.name)::text = 'mitochondrial_sequence'::text));
- --
- -- Name: mnp; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mnp AS
- SELECT feature.feature_id AS mnp_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'MNP'::text);
- --
- -- Name: mobile; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mobile AS
- SELECT feature.feature_id AS mobile_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mobile'::text);
- --
- -- Name: mobile_genetic_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mobile_genetic_element AS
- SELECT feature.feature_id AS mobile_genetic_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'mobile_intron'::text) OR ((cvterm.name)::text = 'extrachromosomal_mobile_genetic_element'::text)) OR ((cvterm.name)::text = 'integrated_mobile_genetic_element'::text)) OR ((cvterm.name)::text = 'natural_transposable_element'::text)) OR ((cvterm.name)::text = 'viral_sequence'::text)) OR ((cvterm.name)::text = 'natural_plasmid'::text)) OR ((cvterm.name)::text = 'phage_sequence'::text)) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'transposable_element'::text)) OR ((cvterm.name)::text = 'proviral_region'::text)) OR ((cvterm.name)::text = 'integron'::text)) OR ((cvterm.name)::text = 'genomic_island'::text)) OR ((cvterm.name)::text = 'integrated_plasmid'::text)) OR ((cvterm.name)::text = 'cointegrated_plasmid'::text)) OR ((cvterm.name)::text = 'retrotransposon'::text)) OR ((cvterm.name)::text = 'DNA_transposon'::text)) OR ((cvterm.name)::text = 'foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'transgenic_transposable_element'::text)) OR ((cvterm.name)::text = 'natural_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'nested_transposon'::text)) OR ((cvterm.name)::text = 'LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'LINE_element'::text)) OR ((cvterm.name)::text = 'SINE_element'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat_element'::text)) OR ((cvterm.name)::text = 'foldback_element'::text)) OR ((cvterm.name)::text = 'conjugative_transposon'::text)) OR ((cvterm.name)::text = 'helitron'::text)) OR ((cvterm.name)::text = 'p_element'::text)) OR ((cvterm.name)::text = 'MITE'::text)) OR ((cvterm.name)::text = 'insertion_sequence'::text)) OR ((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'prophage'::text)) OR ((cvterm.name)::text = 'pathogenic_island'::text)) OR ((cvterm.name)::text = 'metabolic_island'::text)) OR ((cvterm.name)::text = 'adaptive_island'::text)) OR ((cvterm.name)::text = 'symbiosis_island'::text)) OR ((cvterm.name)::text = 'cryptic_prophage'::text)) OR ((cvterm.name)::text = 'defective_conjugative_transposon'::text)) OR ((cvterm.name)::text = 'mobile_genetic_element'::text));
- --
- -- Name: mobile_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mobile_intron AS
- SELECT feature.feature_id AS mobile_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mobile_intron'::text);
- --
- -- Name: modified_adenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_adenosine AS
- SELECT feature.feature_id AS modified_adenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((cvterm.name)::text = 'one_methyladenosine'::text) OR ((cvterm.name)::text = 'two_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'N6_glycinylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_threonyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyl_N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_hydroxynorvalylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosyladenosine_phosphate'::text)) OR ((cvterm.name)::text = 'N6_N6_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_2_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_N6_2_prime_O_trimethyladenosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_acetyladenosine'::text)) OR ((cvterm.name)::text = 'modified_adenosine'::text));
- --
- -- Name: modified_amino_acid_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_amino_acid_feature AS
- SELECT feature.feature_id AS modified_amino_acid_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((cvterm.name)::text = 'modified_glycine'::text) OR ((cvterm.name)::text = 'modified_L_alanine'::text)) OR ((cvterm.name)::text = 'modified_L_asparagine'::text)) OR ((cvterm.name)::text = 'modified_L_aspartic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_cysteine'::text)) OR ((cvterm.name)::text = 'modified_L_glutamic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_threonine'::text)) OR ((cvterm.name)::text = 'modified_L_tryptophan'::text)) OR ((cvterm.name)::text = 'modified_L_glutamine'::text)) OR ((cvterm.name)::text = 'modified_L_methionine'::text)) OR ((cvterm.name)::text = 'modified_L_isoleucine'::text)) OR ((cvterm.name)::text = 'modified_L_phenylalanine'::text)) OR ((cvterm.name)::text = 'modified_L_histidine'::text)) OR ((cvterm.name)::text = 'modified_L_serine'::text)) OR ((cvterm.name)::text = 'modified_L_lysine'::text)) OR ((cvterm.name)::text = 'modified_L_leucine'::text)) OR ((cvterm.name)::text = 'modified_L_selenocysteine'::text)) OR ((cvterm.name)::text = 'modified_L_valine'::text)) OR ((cvterm.name)::text = 'modified_L_proline'::text)) OR ((cvterm.name)::text = 'modified_L_tyrosine'::text)) OR ((cvterm.name)::text = 'modified_L_arginine'::text)) OR ((cvterm.name)::text = 'modified_amino_acid_feature'::text));
- --
- -- Name: modified_base; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_base AS
- SELECT feature.feature_id AS modified_base_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'methylated_base_feature'::text) OR ((cvterm.name)::text = 'methylated_C'::text)) OR ((cvterm.name)::text = 'methylated_A'::text)) OR ((cvterm.name)::text = 'modified_base'::text));
- --
- -- Name: modified_cytidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_cytidine AS
- SELECT feature.feature_id AS modified_cytidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((cvterm.name)::text = 'three_methylcytidine'::text) OR ((cvterm.name)::text = 'five_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_thiocytidine'::text)) OR ((cvterm.name)::text = 'N4_acetylcytidine'::text)) OR ((cvterm.name)::text = 'five_formylcytidine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'N4_acetyl_2_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'lysidine'::text)) OR ((cvterm.name)::text = 'N4_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_2_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'five_hydroxymethylcytidine'::text)) OR ((cvterm.name)::text = 'five_formyl_two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_N4_2_prime_O_trimethylcytidine'::text)) OR ((cvterm.name)::text = 'modified_cytidine'::text));
- --
- -- Name: modified_glycine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_glycine AS
- SELECT feature.feature_id AS modified_glycine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_glycine'::text);
- --
- -- Name: modified_guanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_guanosine AS
- SELECT feature.feature_id AS modified_guanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((cvterm.name)::text = 'seven_deazaguanosine'::text) OR ((cvterm.name)::text = 'one_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_methylguanosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_2_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_2_prime_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosylguanosine_phosphate'::text)) OR ((cvterm.name)::text = 'wybutosine'::text)) OR ((cvterm.name)::text = 'peroxywybutosine'::text)) OR ((cvterm.name)::text = 'hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'undermodified_hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'wyosine'::text)) OR ((cvterm.name)::text = 'methylwyosine'::text)) OR ((cvterm.name)::text = 'N2_7_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_7_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'four_demethylwyosine'::text)) OR ((cvterm.name)::text = 'isowyosine'::text)) OR ((cvterm.name)::text = 'N2_7_2prirme_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'queuosine'::text)) OR ((cvterm.name)::text = 'epoxyqueuosine'::text)) OR ((cvterm.name)::text = 'galactosyl_queuosine'::text)) OR ((cvterm.name)::text = 'mannosyl_queuosine'::text)) OR ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'archaeosine'::text)) OR ((cvterm.name)::text = 'modified_guanosine'::text));
- --
- -- Name: modified_inosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_inosine AS
- SELECT feature.feature_id AS modified_inosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'methylinosine'::text) OR ((cvterm.name)::text = 'one_methylinosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylinosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylinosine'::text)) OR ((cvterm.name)::text = 'modified_inosine'::text));
- --
- -- Name: modified_l_alanine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_alanine AS
- SELECT feature.feature_id AS modified_l_alanine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_alanine'::text);
- --
- -- Name: modified_l_arginine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_arginine AS
- SELECT feature.feature_id AS modified_l_arginine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_arginine'::text);
- --
- -- Name: modified_l_asparagine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_asparagine AS
- SELECT feature.feature_id AS modified_l_asparagine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_asparagine'::text);
- --
- -- Name: modified_l_aspartic_acid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_aspartic_acid AS
- SELECT feature.feature_id AS modified_l_aspartic_acid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_aspartic_acid'::text);
- --
- -- Name: modified_l_cysteine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_cysteine AS
- SELECT feature.feature_id AS modified_l_cysteine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_cysteine'::text);
- --
- -- Name: modified_l_glutamic_acid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_glutamic_acid AS
- SELECT feature.feature_id AS modified_l_glutamic_acid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_glutamic_acid'::text);
- --
- -- Name: modified_l_glutamine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_glutamine AS
- SELECT feature.feature_id AS modified_l_glutamine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_glutamine'::text);
- --
- -- Name: modified_l_histidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_histidine AS
- SELECT feature.feature_id AS modified_l_histidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_histidine'::text);
- --
- -- Name: modified_l_isoleucine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_isoleucine AS
- SELECT feature.feature_id AS modified_l_isoleucine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_isoleucine'::text);
- --
- -- Name: modified_l_leucine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_leucine AS
- SELECT feature.feature_id AS modified_l_leucine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_leucine'::text);
- --
- -- Name: modified_l_lysine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_lysine AS
- SELECT feature.feature_id AS modified_l_lysine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_lysine'::text);
- --
- -- Name: modified_l_methionine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_methionine AS
- SELECT feature.feature_id AS modified_l_methionine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_methionine'::text);
- --
- -- Name: modified_l_phenylalanine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_phenylalanine AS
- SELECT feature.feature_id AS modified_l_phenylalanine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_phenylalanine'::text);
- --
- -- Name: modified_l_proline; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_proline AS
- SELECT feature.feature_id AS modified_l_proline_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_proline'::text);
- --
- -- Name: modified_l_selenocysteine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_selenocysteine AS
- SELECT feature.feature_id AS modified_l_selenocysteine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_selenocysteine'::text);
- --
- -- Name: modified_l_serine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_serine AS
- SELECT feature.feature_id AS modified_l_serine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_serine'::text);
- --
- -- Name: modified_l_threonine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_threonine AS
- SELECT feature.feature_id AS modified_l_threonine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_threonine'::text);
- --
- -- Name: modified_l_tryptophan; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_tryptophan AS
- SELECT feature.feature_id AS modified_l_tryptophan_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_tryptophan'::text);
- --
- -- Name: modified_l_tyrosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_tyrosine AS
- SELECT feature.feature_id AS modified_l_tyrosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_tyrosine'::text);
- --
- -- Name: modified_l_valine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_l_valine AS
- SELECT feature.feature_id AS modified_l_valine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'modified_L_valine'::text);
- --
- -- Name: modified_rna_base_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_rna_base_feature AS
- SELECT feature.feature_id AS modified_rna_base_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'inosine'::text) OR ((cvterm.name)::text = 'seven_methylguanine'::text)) OR ((cvterm.name)::text = 'ribothymidine'::text)) OR ((cvterm.name)::text = 'modified_adenosine'::text)) OR ((cvterm.name)::text = 'modified_cytidine'::text)) OR ((cvterm.name)::text = 'modified_guanosine'::text)) OR ((cvterm.name)::text = 'modified_uridine'::text)) OR ((cvterm.name)::text = 'modified_inosine'::text)) OR ((cvterm.name)::text = 'methylinosine'::text)) OR ((cvterm.name)::text = 'one_methylinosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylinosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylinosine'::text)) OR ((cvterm.name)::text = 'one_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'N6_glycinylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_threonyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyl_N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_hydroxynorvalylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosyladenosine_phosphate'::text)) OR ((cvterm.name)::text = 'N6_N6_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_2_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_N6_2_prime_O_trimethyladenosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_acetyladenosine'::text)) OR ((cvterm.name)::text = 'three_methylcytidine'::text)) OR ((cvterm.name)::text = 'five_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_thiocytidine'::text)) OR ((cvterm.name)::text = 'N4_acetylcytidine'::text)) OR ((cvterm.name)::text = 'five_formylcytidine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'N4_acetyl_2_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'lysidine'::text)) OR ((cvterm.name)::text = 'N4_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_2_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'five_hydroxymethylcytidine'::text)) OR ((cvterm.name)::text = 'five_formyl_two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_N4_2_prime_O_trimethylcytidine'::text)) OR ((cvterm.name)::text = 'seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'one_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_methylguanosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_2_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_2_prime_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosylguanosine_phosphate'::text)) OR ((cvterm.name)::text = 'wybutosine'::text)) OR ((cvterm.name)::text = 'peroxywybutosine'::text)) OR ((cvterm.name)::text = 'hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'undermodified_hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'wyosine'::text)) OR ((cvterm.name)::text = 'methylwyosine'::text)) OR ((cvterm.name)::text = 'N2_7_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_7_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'four_demethylwyosine'::text)) OR ((cvterm.name)::text = 'isowyosine'::text)) OR ((cvterm.name)::text = 'N2_7_2prirme_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'queuosine'::text)) OR ((cvterm.name)::text = 'epoxyqueuosine'::text)) OR ((cvterm.name)::text = 'galactosyl_queuosine'::text)) OR ((cvterm.name)::text = 'mannosyl_queuosine'::text)) OR ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'archaeosine'::text)) OR ((cvterm.name)::text = 'dihydrouridine'::text)) OR ((cvterm.name)::text = 'pseudouridine'::text)) OR ((cvterm.name)::text = 'five_methyluridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'one_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_thiouridine'::text)) OR ((cvterm.name)::text = 'four_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methyl_2_thiouridine'::text)) OR ((cvterm.name)::text = 'two_thio_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'three_three_amino_three_carboxypropyl_uridine'::text)) OR ((cvterm.name)::text = 'five_hydroxyuridine'::text)) OR ((cvterm.name)::text = 'five_methoxyuridine'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_aminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_selenouridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'three_methyluridine'::text)) OR ((cvterm.name)::text = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethyluridine'::text)) OR ((cvterm.name)::text = 'three_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'five_methyldihydrouridine'::text)) OR ((cvterm.name)::text = 'three_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyluridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'modified_RNA_base_feature'::text));
- --
- -- Name: modified_uridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW modified_uridine AS
- SELECT feature.feature_id AS modified_uridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'dihydrouridine'::text) OR ((cvterm.name)::text = 'pseudouridine'::text)) OR ((cvterm.name)::text = 'five_methyluridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'one_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_thiouridine'::text)) OR ((cvterm.name)::text = 'four_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methyl_2_thiouridine'::text)) OR ((cvterm.name)::text = 'two_thio_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'three_three_amino_three_carboxypropyl_uridine'::text)) OR ((cvterm.name)::text = 'five_hydroxyuridine'::text)) OR ((cvterm.name)::text = 'five_methoxyuridine'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_aminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_selenouridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'three_methyluridine'::text)) OR ((cvterm.name)::text = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethyluridine'::text)) OR ((cvterm.name)::text = 'three_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'five_methyldihydrouridine'::text)) OR ((cvterm.name)::text = 'three_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyluridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'modified_uridine'::text));
- --
- -- Name: molecular_contact_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW molecular_contact_region AS
- SELECT feature.feature_id AS molecular_contact_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((cvterm.name)::text = 'polypeptide_metal_contact'::text) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'molecular_contact_region'::text));
- --
- -- Name: monocistronic; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW monocistronic AS
- SELECT feature.feature_id AS monocistronic_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'monocistronic'::text);
- --
- -- Name: monocistronic_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW monocistronic_mrna AS
- SELECT feature.feature_id AS monocistronic_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'monocistronic_mRNA'::text);
- --
- -- Name: monocistronic_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW monocistronic_primary_transcript AS
- SELECT feature.feature_id AS monocistronic_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'monocistronic_primary_transcript'::text);
- --
- -- Name: monocistronic_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW monocistronic_transcript AS
- SELECT feature.feature_id AS monocistronic_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'monocistronic_primary_transcript'::text) OR ((cvterm.name)::text = 'monocistronic_mRNA'::text)) OR ((cvterm.name)::text = 'monocistronic_transcript'::text));
- --
- -- Name: morpholino_backbone; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW morpholino_backbone AS
- SELECT feature.feature_id AS morpholino_backbone_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'morpholino_backbone'::text);
- --
- -- Name: morpholino_oligo; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW morpholino_oligo AS
- SELECT feature.feature_id AS morpholino_oligo_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'morpholino_oligo'::text);
- --
- -- Name: mrna_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mrna_attribute AS
- SELECT feature.feature_id AS mrna_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((cvterm.name)::text = 'polyadenylated'::text) OR ((cvterm.name)::text = 'exemplar'::text)) OR ((cvterm.name)::text = 'frameshift'::text)) OR ((cvterm.name)::text = 'recoded'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_framshift'::text)) OR ((cvterm.name)::text = 'codon_redefined'::text)) OR ((cvterm.name)::text = 'recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'minus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'plus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'mRNA_attribute'::text));
- --
- -- Name: mrna_recoded_by_codon_redefinition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mrna_recoded_by_codon_redefinition AS
- SELECT feature.feature_id AS mrna_recoded_by_codon_redefinition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mRNA_recoded_by_codon_redefinition'::text);
- --
- -- Name: mrna_recoded_by_translational_bypass; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mrna_recoded_by_translational_bypass AS
- SELECT feature.feature_id AS mrna_recoded_by_translational_bypass_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mRNA_recoded_by_translational_bypass'::text);
- --
- -- Name: mrna_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mrna_region AS
- SELECT feature.feature_id AS mrna_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'riboswitch'::text) OR ((cvterm.name)::text = 'ribosome_entry_site'::text)) OR ((cvterm.name)::text = 'UTR'::text)) OR ((cvterm.name)::text = 'CDS'::text)) OR ((cvterm.name)::text = 'five_prime_open_reading_frame'::text)) OR ((cvterm.name)::text = 'UTR_region'::text)) OR ((cvterm.name)::text = 'CDS_region'::text)) OR ((cvterm.name)::text = 'translational_frameshift'::text)) OR ((cvterm.name)::text = 'recoding_stimulatory_region'::text)) OR ((cvterm.name)::text = 'internal_ribosome_entry_site'::text)) OR ((cvterm.name)::text = 'Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'kozak_sequence'::text)) OR ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'five_prime_UTR'::text)) OR ((cvterm.name)::text = 'three_prime_UTR'::text)) OR ((cvterm.name)::text = 'internal_UTR'::text)) OR ((cvterm.name)::text = 'untranslated_region_polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'edited_CDS'::text)) OR ((cvterm.name)::text = 'CDS_fragment'::text)) OR ((cvterm.name)::text = 'CDS_independently_known'::text)) OR ((cvterm.name)::text = 'CDS_predicted'::text)) OR ((cvterm.name)::text = 'orphan_CDS'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_sequence_similarity_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_domain_match_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_EST_or_cDNA_data'::text)) OR ((cvterm.name)::text = 'upstream_AUG_codon'::text)) OR ((cvterm.name)::text = 'AU_rich_element'::text)) OR ((cvterm.name)::text = 'Bruno_response_element'::text)) OR ((cvterm.name)::text = 'iron_responsive_element'::text)) OR ((cvterm.name)::text = 'coding_start'::text)) OR ((cvterm.name)::text = 'coding_end'::text)) OR ((cvterm.name)::text = 'codon'::text)) OR ((cvterm.name)::text = 'recoded_codon'::text)) OR ((cvterm.name)::text = 'start_codon'::text)) OR ((cvterm.name)::text = 'stop_codon'::text)) OR ((cvterm.name)::text = 'stop_codon_read_through'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'non_canonical_start_codon'::text)) OR ((cvterm.name)::text = 'four_bp_start_codon'::text)) OR ((cvterm.name)::text = 'CTG_start_codon'::text)) OR ((cvterm.name)::text = 'plus_1_translational_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_translational_frameshift'::text)) OR ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'SECIS_element'::text)) OR ((cvterm.name)::text = 'three_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'five_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'stop_codon_signal'::text)) OR ((cvterm.name)::text = 'three_prime_stem_loop_structure'::text)) OR ((cvterm.name)::text = 'flanking_three_prime_quadruplet_recoding_signal'::text)) OR ((cvterm.name)::text = 'three_prime_repeat_recoding_signal'::text)) OR ((cvterm.name)::text = 'distant_three_prime_recoding_signal'::text)) OR ((cvterm.name)::text = 'UAG_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UAA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UGA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'mRNA_region'::text));
- --
- -- Name: mrna_with_frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mrna_with_frameshift AS
- SELECT feature.feature_id AS mrna_with_frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'mRNA_with_minus_1_frameshift'::text) OR ((cvterm.name)::text = 'mRNA_with_plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_2_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_frameshift'::text));
- --
- -- Name: mrna_with_minus_1_frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mrna_with_minus_1_frameshift AS
- SELECT feature.feature_id AS mrna_with_minus_1_frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mRNA_with_minus_1_frameshift'::text);
- --
- -- Name: mrna_with_minus_2_frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mrna_with_minus_2_frameshift AS
- SELECT feature.feature_id AS mrna_with_minus_2_frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mRNA_with_minus_2_frameshift'::text);
- --
- -- Name: mrna_with_plus_1_frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mrna_with_plus_1_frameshift AS
- SELECT feature.feature_id AS mrna_with_plus_1_frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mRNA_with_plus_1_frameshift'::text);
- --
- -- Name: mrna_with_plus_2_frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mrna_with_plus_2_frameshift AS
- SELECT feature.feature_id AS mrna_with_plus_2_frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mRNA_with_plus_2_frameshift'::text);
- --
- -- Name: mt_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mt_gene AS
- SELECT feature.feature_id AS mt_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'kinetoplast_gene'::text) OR ((cvterm.name)::text = 'maxicircle_gene'::text)) OR ((cvterm.name)::text = 'minicircle_gene'::text)) OR ((cvterm.name)::text = 'cryptogene'::text)) OR ((cvterm.name)::text = 'mt_gene'::text));
- --
- -- Name: mte; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mte AS
- SELECT feature.feature_id AS mte_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'MTE'::text);
- --
- -- Name: mutated_variant_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW mutated_variant_site AS
- SELECT feature.feature_id AS mutated_variant_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'mutated_variant_site'::text);
- --
- -- Name: n2_2_prime_o_dimethylguanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n2_2_prime_o_dimethylguanosine AS
- SELECT feature.feature_id AS n2_2_prime_o_dimethylguanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N2_2_prime_O_dimethylguanosine'::text);
- --
- -- Name: n2_7_2prirme_o_trimethylguanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n2_7_2prirme_o_trimethylguanosine AS
- SELECT feature.feature_id AS n2_7_2prirme_o_trimethylguanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N2_7_2prirme_O_trimethylguanosine'::text);
- --
- -- Name: n2_7_dimethylguanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n2_7_dimethylguanosine AS
- SELECT feature.feature_id AS n2_7_dimethylguanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N2_7_dimethylguanosine'::text);
- --
- -- Name: n2_methylguanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n2_methylguanosine AS
- SELECT feature.feature_id AS n2_methylguanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N2_methylguanosine'::text);
- --
- -- Name: n2_n2_2_prime_o_trimethylguanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n2_n2_2_prime_o_trimethylguanosine AS
- SELECT feature.feature_id AS n2_n2_2_prime_o_trimethylguanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N2_N2_2_prime_O_trimethylguanosine'::text);
- --
- -- Name: n2_n2_7_trimethylguanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n2_n2_7_trimethylguanosine AS
- SELECT feature.feature_id AS n2_n2_7_trimethylguanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N2_N2_7_trimethylguanosine'::text);
- --
- -- Name: n2_n2_dimethylguanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n2_n2_dimethylguanosine AS
- SELECT feature.feature_id AS n2_n2_dimethylguanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N2_N2_dimethylguanosine'::text);
- --
- -- Name: n4_2_prime_o_dimethylcytidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n4_2_prime_o_dimethylcytidine AS
- SELECT feature.feature_id AS n4_2_prime_o_dimethylcytidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N4_2_prime_O_dimethylcytidine'::text);
- --
- -- Name: n4_acetyl_2_prime_o_methylcytidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n4_acetyl_2_prime_o_methylcytidine AS
- SELECT feature.feature_id AS n4_acetyl_2_prime_o_methylcytidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N4_acetyl_2_prime_O_methylcytidine'::text);
- --
- -- Name: n4_acetylcytidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n4_acetylcytidine AS
- SELECT feature.feature_id AS n4_acetylcytidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N4_acetylcytidine'::text);
- --
- -- Name: n4_methylcytidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n4_methylcytidine AS
- SELECT feature.feature_id AS n4_methylcytidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N4_methylcytidine'::text);
- --
- -- Name: n4_n4_2_prime_o_trimethylcytidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n4_n4_2_prime_o_trimethylcytidine AS
- SELECT feature.feature_id AS n4_n4_2_prime_o_trimethylcytidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N4_N4_2_prime_O_trimethylcytidine'::text);
- --
- -- Name: n6_2_prime_o_dimethyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n6_2_prime_o_dimethyladenosine AS
- SELECT feature.feature_id AS n6_2_prime_o_dimethyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N6_2_prime_O_dimethyladenosine'::text);
- --
- -- Name: n6_acetyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n6_acetyladenosine AS
- SELECT feature.feature_id AS n6_acetyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N6_acetyladenosine'::text);
- --
- -- Name: n6_cis_hydroxyisopentenyl_adenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n6_cis_hydroxyisopentenyl_adenosine AS
- SELECT feature.feature_id AS n6_cis_hydroxyisopentenyl_adenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N6_cis_hydroxyisopentenyl_adenosine'::text);
- --
- -- Name: n6_glycinylcarbamoyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n6_glycinylcarbamoyladenosine AS
- SELECT feature.feature_id AS n6_glycinylcarbamoyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N6_glycinylcarbamoyladenosine'::text);
- --
- -- Name: n6_hydroxynorvalylcarbamoyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n6_hydroxynorvalylcarbamoyladenosine AS
- SELECT feature.feature_id AS n6_hydroxynorvalylcarbamoyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N6_hydroxynorvalylcarbamoyladenosine'::text);
- --
- -- Name: n6_isopentenyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n6_isopentenyladenosine AS
- SELECT feature.feature_id AS n6_isopentenyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N6_isopentenyladenosine'::text);
- --
- -- Name: n6_methyl_n6_threonylcarbamoyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n6_methyl_n6_threonylcarbamoyladenosine AS
- SELECT feature.feature_id AS n6_methyl_n6_threonylcarbamoyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N6_methyl_N6_threonylcarbamoyladenosine'::text);
- --
- -- Name: n6_methyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n6_methyladenosine AS
- SELECT feature.feature_id AS n6_methyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N6_methyladenosine'::text);
- --
- -- Name: n6_n6_2_prime_o_trimethyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n6_n6_2_prime_o_trimethyladenosine AS
- SELECT feature.feature_id AS n6_n6_2_prime_o_trimethyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N6_N6_2_prime_O_trimethyladenosine'::text);
- --
- -- Name: n6_n6_dimethyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n6_n6_dimethyladenosine AS
- SELECT feature.feature_id AS n6_n6_dimethyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N6_N6_dimethyladenosine'::text);
- --
- -- Name: n6_threonylcarbamoyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n6_threonylcarbamoyladenosine AS
- SELECT feature.feature_id AS n6_threonylcarbamoyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'N6_threonylcarbamoyladenosine'::text);
- --
- -- Name: n_terminal_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW n_terminal_region AS
- SELECT feature.feature_id AS n_terminal_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'n_terminal_region'::text);
- --
- -- Name: natural_plasmid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW natural_plasmid AS
- SELECT feature.feature_id AS natural_plasmid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'natural_plasmid'::text);
- --
- -- Name: natural_transposable_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW natural_transposable_element AS
- SELECT feature.feature_id AS natural_transposable_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'natural_transposable_element'::text);
- --
- -- Name: natural_variant_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW natural_variant_site AS
- SELECT feature.feature_id AS natural_variant_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'natural_variant_site'::text);
- --
- -- Name: nc_conserved_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nc_conserved_region AS
- SELECT feature.feature_id AS nc_conserved_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'nc_conserved_region'::text);
- --
- -- Name: nc_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nc_primary_transcript AS
- SELECT feature.feature_id AS nc_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'scRNA_primary_transcript'::text) OR ((cvterm.name)::text = 'rRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tmRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'SRP_RNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'miRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tasiRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_small_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_large_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'alanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'arginine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'asparagine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'aspartic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'cysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glycine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'histidine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'isoleucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'leucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'lysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methionine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'phenylalanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'proline_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'serine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'threonine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tryptophan_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tyrosine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'valine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'pyrrolysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'selenocysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'U14_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'stRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'nc_primary_transcript'::text));
- --
- -- Name: nc_transcript_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nc_transcript_variant AS
- SELECT feature.feature_id AS nc_transcript_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'mature_miRNA_variant'::text) OR ((cvterm.name)::text = 'nc_transcript_variant'::text));
- --
- -- Name: ncrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ncrna AS
- SELECT feature.feature_id AS ncrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'scRNA'::text) OR ((cvterm.name)::text = 'rRNA'::text)) OR ((cvterm.name)::text = 'tRNA'::text)) OR ((cvterm.name)::text = 'snRNA'::text)) OR ((cvterm.name)::text = 'snoRNA'::text)) OR ((cvterm.name)::text = 'small_regulatory_ncRNA'::text)) OR ((cvterm.name)::text = 'RNase_MRP_RNA'::text)) OR ((cvterm.name)::text = 'RNase_P_RNA'::text)) OR ((cvterm.name)::text = 'telomerase_RNA'::text)) OR ((cvterm.name)::text = 'vault_RNA'::text)) OR ((cvterm.name)::text = 'Y_RNA'::text)) OR ((cvterm.name)::text = 'rasiRNA'::text)) OR ((cvterm.name)::text = 'SRP_RNA'::text)) OR ((cvterm.name)::text = 'guide_RNA'::text)) OR ((cvterm.name)::text = 'antisense_RNA'::text)) OR ((cvterm.name)::text = 'siRNA'::text)) OR ((cvterm.name)::text = 'stRNA'::text)) OR ((cvterm.name)::text = 'class_II_RNA'::text)) OR ((cvterm.name)::text = 'class_I_RNA'::text)) OR ((cvterm.name)::text = 'piRNA'::text)) OR ((cvterm.name)::text = 'lincRNA'::text)) OR ((cvterm.name)::text = 'tasiRNA'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_RNA'::text)) OR ((cvterm.name)::text = 'small_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'large_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'rRNA_18S'::text)) OR ((cvterm.name)::text = 'rRNA_16S'::text)) OR ((cvterm.name)::text = 'rRNA_5_8S'::text)) OR ((cvterm.name)::text = 'rRNA_5S'::text)) OR ((cvterm.name)::text = 'rRNA_28S'::text)) OR ((cvterm.name)::text = 'rRNA_23S'::text)) OR ((cvterm.name)::text = 'rRNA_25S'::text)) OR ((cvterm.name)::text = 'rRNA_21S'::text)) OR ((cvterm.name)::text = 'alanyl_tRNA'::text)) OR ((cvterm.name)::text = 'asparaginyl_tRNA'::text)) OR ((cvterm.name)::text = 'aspartyl_tRNA'::text)) OR ((cvterm.name)::text = 'cysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutaminyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutamyl_tRNA'::text)) OR ((cvterm.name)::text = 'glycyl_tRNA'::text)) OR ((cvterm.name)::text = 'histidyl_tRNA'::text)) OR ((cvterm.name)::text = 'isoleucyl_tRNA'::text)) OR ((cvterm.name)::text = 'leucyl_tRNA'::text)) OR ((cvterm.name)::text = 'lysyl_tRNA'::text)) OR ((cvterm.name)::text = 'methionyl_tRNA'::text)) OR ((cvterm.name)::text = 'phenylalanyl_tRNA'::text)) OR ((cvterm.name)::text = 'prolyl_tRNA'::text)) OR ((cvterm.name)::text = 'seryl_tRNA'::text)) OR ((cvterm.name)::text = 'threonyl_tRNA'::text)) OR ((cvterm.name)::text = 'tryptophanyl_tRNA'::text)) OR ((cvterm.name)::text = 'tyrosyl_tRNA'::text)) OR ((cvterm.name)::text = 'valyl_tRNA'::text)) OR ((cvterm.name)::text = 'pyrrolysyl_tRNA'::text)) OR ((cvterm.name)::text = 'arginyl_tRNA'::text)) OR ((cvterm.name)::text = 'selenocysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'U1_snRNA'::text)) OR ((cvterm.name)::text = 'U2_snRNA'::text)) OR ((cvterm.name)::text = 'U4_snRNA'::text)) OR ((cvterm.name)::text = 'U4atac_snRNA'::text)) OR ((cvterm.name)::text = 'U5_snRNA'::text)) OR ((cvterm.name)::text = 'U6_snRNA'::text)) OR ((cvterm.name)::text = 'U6atac_snRNA'::text)) OR ((cvterm.name)::text = 'U11_snRNA'::text)) OR ((cvterm.name)::text = 'U12_snRNA'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA'::text)) OR ((cvterm.name)::text = 'U14_snoRNA'::text)) OR ((cvterm.name)::text = 'U3_snoRNA'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'pseudouridylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'miRNA'::text)) OR ((cvterm.name)::text = 'RNA_6S'::text)) OR ((cvterm.name)::text = 'CsrB_RsmB_RNA'::text)) OR ((cvterm.name)::text = 'DsrA_RNA'::text)) OR ((cvterm.name)::text = 'OxyS_RNA'::text)) OR ((cvterm.name)::text = 'RprA_RNA'::text)) OR ((cvterm.name)::text = 'RRE_RNA'::text)) OR ((cvterm.name)::text = 'spot_42_RNA'::text)) OR ((cvterm.name)::text = 'tmRNA'::text)) OR ((cvterm.name)::text = 'GcvB_RNA'::text)) OR ((cvterm.name)::text = 'MicF_RNA'::text)) OR ((cvterm.name)::text = 'ncRNA'::text));
- --
- -- Name: ncrna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ncrna_gene AS
- SELECT feature.feature_id AS ncrna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((cvterm.name)::text = 'gRNA_gene'::text) OR ((cvterm.name)::text = 'miRNA_gene'::text)) OR ((cvterm.name)::text = 'scRNA_gene'::text)) OR ((cvterm.name)::text = 'snoRNA_gene'::text)) OR ((cvterm.name)::text = 'snRNA_gene'::text)) OR ((cvterm.name)::text = 'SRP_RNA_gene'::text)) OR ((cvterm.name)::text = 'stRNA_gene'::text)) OR ((cvterm.name)::text = 'tmRNA_gene'::text)) OR ((cvterm.name)::text = 'tRNA_gene'::text)) OR ((cvterm.name)::text = 'rRNA_gene'::text)) OR ((cvterm.name)::text = 'piRNA_gene'::text)) OR ((cvterm.name)::text = 'RNase_P_RNA_gene'::text)) OR ((cvterm.name)::text = 'RNase_MRP_RNA_gene'::text)) OR ((cvterm.name)::text = 'lincRNA_gene'::text)) OR ((cvterm.name)::text = 'telomerase_RNA_gene'::text)) OR ((cvterm.name)::text = 'ncRNA_gene'::text));
- --
- -- Name: ndm2_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ndm2_motif AS
- SELECT feature.feature_id AS ndm2_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'NDM2_motif'::text);
- --
- -- Name: ndm3_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ndm3_motif AS
- SELECT feature.feature_id AS ndm3_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'NDM3_motif'::text);
- --
- -- Name: negative_sense_ssrna_viral_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW negative_sense_ssrna_viral_sequence AS
- SELECT feature.feature_id AS negative_sense_ssrna_viral_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text);
- --
- -- Name: negatively_autoregulated; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW negatively_autoregulated AS
- SELECT feature.feature_id AS negatively_autoregulated_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'negatively_autoregulated'::text);
- --
- -- Name: negatively_autoregulated_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW negatively_autoregulated_gene AS
- SELECT feature.feature_id AS negatively_autoregulated_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'negatively_autoregulated_gene'::text);
- --
- -- Name: nested_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nested_repeat AS
- SELECT feature.feature_id AS nested_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'nested_tandem_repeat'::text) OR ((cvterm.name)::text = 'nested_repeat'::text));
- --
- -- Name: nested_tandem_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nested_tandem_repeat AS
- SELECT feature.feature_id AS nested_tandem_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'nested_tandem_repeat'::text);
- --
- -- Name: nested_transposon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nested_transposon AS
- SELECT feature.feature_id AS nested_transposon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'nested_transposon'::text);
- --
- -- Name: nmd_transcript_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nmd_transcript_variant AS
- SELECT feature.feature_id AS nmd_transcript_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'NMD_transcript_variant'::text);
- --
- -- Name: no_output; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW no_output AS
- SELECT feature.feature_id AS no_output_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'no_output'::text);
- --
- -- Name: non_adjacent_residues; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_adjacent_residues AS
- SELECT feature.feature_id AS non_adjacent_residues_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'non_adjacent_residues'::text);
- --
- -- Name: non_canonical_five_prime_splice_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_canonical_five_prime_splice_site AS
- SELECT feature.feature_id AS non_canonical_five_prime_splice_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'non_canonical_five_prime_splice_site'::text);
- --
- -- Name: non_canonical_start_codon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_canonical_start_codon AS
- SELECT feature.feature_id AS non_canonical_start_codon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'four_bp_start_codon'::text) OR ((cvterm.name)::text = 'CTG_start_codon'::text)) OR ((cvterm.name)::text = 'non_canonical_start_codon'::text));
- --
- -- Name: non_canonical_three_prime_splice_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_canonical_three_prime_splice_site AS
- SELECT feature.feature_id AS non_canonical_three_prime_splice_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'non_canonical_three_prime_splice_site'::text);
- --
- -- Name: non_coding_exon_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_coding_exon_variant AS
- SELECT feature.feature_id AS non_coding_exon_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'non_coding_exon_variant'::text);
- --
- -- Name: non_conservative_amino_acid_substitution; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_conservative_amino_acid_substitution AS
- SELECT feature.feature_id AS non_conservative_amino_acid_substitution_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'non_conservative_amino_acid_substitution'::text);
- --
- -- Name: non_conservative_missense_codon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_conservative_missense_codon AS
- SELECT feature.feature_id AS non_conservative_missense_codon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'non_conservative_missense_codon'::text);
- --
- -- Name: non_cytoplasmic_polypeptide_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_cytoplasmic_polypeptide_region AS
- SELECT feature.feature_id AS non_cytoplasmic_polypeptide_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'non_cytoplasmic_polypeptide_region'::text);
- --
- -- Name: non_ltr_retrotransposon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_ltr_retrotransposon AS
- SELECT feature.feature_id AS non_ltr_retrotransposon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'LINE_element'::text) OR ((cvterm.name)::text = 'SINE_element'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon'::text));
- --
- -- Name: non_ltr_retrotransposon_polymeric_tract; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_ltr_retrotransposon_polymeric_tract AS
- SELECT feature.feature_id AS non_ltr_retrotransposon_polymeric_tract_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'non_LTR_retrotransposon_polymeric_tract'::text);
- --
- -- Name: non_processed_pseudogene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_processed_pseudogene AS
- SELECT feature.feature_id AS non_processed_pseudogene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'pseudogene_by_unequal_crossing_over'::text) OR ((cvterm.name)::text = 'nuclear_mt_pseudogene'::text)) OR ((cvterm.name)::text = 'cassette_pseudogene'::text)) OR ((cvterm.name)::text = 'duplicated_pseudogene'::text)) OR ((cvterm.name)::text = 'unitary_pseudogene'::text)) OR ((cvterm.name)::text = 'non_processed_pseudogene'::text));
- --
- -- Name: non_protein_coding; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_protein_coding AS
- SELECT feature.feature_id AS non_protein_coding_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((cvterm.name)::text = 'miRNA_encoding'::text) OR ((cvterm.name)::text = 'rRNA_encoding'::text)) OR ((cvterm.name)::text = 'scRNA_encoding'::text)) OR ((cvterm.name)::text = 'snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'snRNA_encoding'::text)) OR ((cvterm.name)::text = 'SRP_RNA_encoding'::text)) OR ((cvterm.name)::text = 'stRNA_encoding'::text)) OR ((cvterm.name)::text = 'tmRNA_encoding'::text)) OR ((cvterm.name)::text = 'tRNA_encoding'::text)) OR ((cvterm.name)::text = 'gRNA_encoding'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'non_protein_coding'::text));
- --
- -- Name: non_synonymous_codon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_synonymous_codon AS
- SELECT feature.feature_id AS non_synonymous_codon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'stop_gained'::text) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_synonymous_codon'::text));
- --
- -- Name: non_terminal_residue; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_terminal_residue AS
- SELECT feature.feature_id AS non_terminal_residue_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'non_terminal_residue'::text);
- --
- -- Name: non_transcribed_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW non_transcribed_region AS
- SELECT feature.feature_id AS non_transcribed_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'non_transcribed_region'::text);
- --
- -- Name: nonamer_of_recombination_feature_of_vertebrate_im_sys_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nonamer_of_recombination_feature_of_vertebrate_im_sys_gene AS
- SELECT feature.feature_id AS nonamer_of_recombination_feature_of_vertebrate_im_sys_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'three_prime_D_nonamer'::text) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text));
- --
- -- Name: noncoding_exon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW noncoding_exon AS
- SELECT feature.feature_id AS noncoding_exon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'three_prime_noncoding_exon'::text) OR ((cvterm.name)::text = 'five_prime_noncoding_exon'::text)) OR ((cvterm.name)::text = 'noncoding_exon'::text));
- --
- -- Name: noncoding_region_of_exon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW noncoding_region_of_exon AS
- SELECT feature.feature_id AS noncoding_region_of_exon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'three_prime_coding_exon_noncoding_region'::text) OR ((cvterm.name)::text = 'five_prime_coding_exon_noncoding_region'::text)) OR ((cvterm.name)::text = 'noncoding_region_of_exon'::text));
- --
- -- Name: noncontiguous_finished; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW noncontiguous_finished AS
- SELECT feature.feature_id AS noncontiguous_finished_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'noncontiguous_finished'::text);
- --
- -- Name: nuclear_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nuclear_chromosome AS
- SELECT feature.feature_id AS nuclear_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'nuclear_chromosome'::text);
- --
- -- Name: nuclear_export_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nuclear_export_signal AS
- SELECT feature.feature_id AS nuclear_export_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'nuclear_export_signal'::text);
- --
- -- Name: nuclear_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nuclear_gene AS
- SELECT feature.feature_id AS nuclear_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'nuclear_gene'::text);
- --
- -- Name: nuclear_localization_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nuclear_localization_signal AS
- SELECT feature.feature_id AS nuclear_localization_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'nuclear_localization_signal'::text);
- --
- -- Name: nuclear_mt_pseudogene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nuclear_mt_pseudogene AS
- SELECT feature.feature_id AS nuclear_mt_pseudogene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'nuclear_mt_pseudogene'::text);
- --
- -- Name: nuclear_rim_localization_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nuclear_rim_localization_signal AS
- SELECT feature.feature_id AS nuclear_rim_localization_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'nuclear_rim_localization_signal'::text);
- --
- -- Name: nuclear_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nuclear_sequence AS
- SELECT feature.feature_id AS nuclear_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'nuclear_sequence'::text);
- --
- -- Name: nuclease_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nuclease_binding_site AS
- SELECT feature.feature_id AS nuclease_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'restriction_enzyme_binding_site'::text) OR ((cvterm.name)::text = 'nuclease_sensitive_site'::text)) OR ((cvterm.name)::text = 'homing_endonuclease_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'group_1_intron_homing_endonuclease_target_region'::text)) OR ((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'nuclease_binding_site'::text));
- --
- -- Name: nuclease_hypersensitive_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nuclease_hypersensitive_site AS
- SELECT feature.feature_id AS nuclease_hypersensitive_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text) OR ((cvterm.name)::text = 'nuclease_hypersensitive_site'::text));
- --
- -- Name: nuclease_sensitive_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nuclease_sensitive_site AS
- SELECT feature.feature_id AS nuclease_sensitive_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'nuclease_hypersensitive_site'::text) OR ((cvterm.name)::text = 'group_1_intron_homing_endonuclease_target_region'::text)) OR ((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'nuclease_sensitive_site'::text));
- --
- -- Name: nucleic_acid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nucleic_acid AS
- SELECT feature.feature_id AS nucleic_acid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((cvterm.name)::text = 'DNA'::text) OR ((cvterm.name)::text = 'RNA'::text)) OR ((cvterm.name)::text = 'morpholino_backbone'::text)) OR ((cvterm.name)::text = 'PNA'::text)) OR ((cvterm.name)::text = 'LNA'::text)) OR ((cvterm.name)::text = 'TNA'::text)) OR ((cvterm.name)::text = 'GNA'::text)) OR ((cvterm.name)::text = 'cDNA'::text)) OR ((cvterm.name)::text = 'genomic_DNA'::text)) OR ((cvterm.name)::text = 'single_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'double_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'R_GNA'::text)) OR ((cvterm.name)::text = 'S_GNA'::text)) OR ((cvterm.name)::text = 'nucleic_acid'::text));
- --
- -- Name: nucleomorph_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nucleomorph_gene AS
- SELECT feature.feature_id AS nucleomorph_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'nucleomorph_gene'::text);
- --
- -- Name: nucleomorphic_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nucleomorphic_chromosome AS
- SELECT feature.feature_id AS nucleomorphic_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'nucleomorphic_chromosome'::text);
- --
- -- Name: nucleomorphic_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nucleomorphic_sequence AS
- SELECT feature.feature_id AS nucleomorphic_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'nucleomorphic_sequence'::text);
- --
- -- Name: nucleotide_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nucleotide_binding_site AS
- SELECT feature.feature_id AS nucleotide_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'miRNA_target_site'::text) OR ((cvterm.name)::text = 'DNA_binding_site'::text)) OR ((cvterm.name)::text = 'primer_binding_site'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'nucleotide_binding_site'::text));
- --
- -- Name: nucleotide_match; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nucleotide_match AS
- SELECT feature.feature_id AS nucleotide_match_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((cvterm.name)::text = 'expressed_sequence_match'::text) OR ((cvterm.name)::text = 'cross_genome_match'::text)) OR ((cvterm.name)::text = 'translated_nucleotide_match'::text)) OR ((cvterm.name)::text = 'primer_match'::text)) OR ((cvterm.name)::text = 'EST_match'::text)) OR ((cvterm.name)::text = 'cDNA_match'::text)) OR ((cvterm.name)::text = 'UST_match'::text)) OR ((cvterm.name)::text = 'RST_match'::text)) OR ((cvterm.name)::text = 'nucleotide_match'::text));
- --
- -- Name: nucleotide_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nucleotide_motif AS
- SELECT feature.feature_id AS nucleotide_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'DNA_motif'::text) OR ((cvterm.name)::text = 'RNA_motif'::text)) OR ((cvterm.name)::text = 'PSE_motif'::text)) OR ((cvterm.name)::text = 'CAAT_signal'::text)) OR ((cvterm.name)::text = 'minus_10_signal'::text)) OR ((cvterm.name)::text = 'minus_35_signal'::text)) OR ((cvterm.name)::text = 'DRE_motif'::text)) OR ((cvterm.name)::text = 'E_box_motif'::text)) OR ((cvterm.name)::text = 'INR1_motif'::text)) OR ((cvterm.name)::text = 'GAGA_motif'::text)) OR ((cvterm.name)::text = 'octamer_motif'::text)) OR ((cvterm.name)::text = 'retinoic_acid_responsive_element'::text)) OR ((cvterm.name)::text = 'promoter_element'::text)) OR ((cvterm.name)::text = 'DCE_SI'::text)) OR ((cvterm.name)::text = 'DCE_SII'::text)) OR ((cvterm.name)::text = 'DCE_SIII'::text)) OR ((cvterm.name)::text = 'minus_12_signal'::text)) OR ((cvterm.name)::text = 'minus_24_signal'::text)) OR ((cvterm.name)::text = 'GC_rich_promoter_region'::text)) OR ((cvterm.name)::text = 'DMv4_motif'::text)) OR ((cvterm.name)::text = 'DMv5_motif'::text)) OR ((cvterm.name)::text = 'DMv3_motif'::text)) OR ((cvterm.name)::text = 'DMv2_motif'::text)) OR ((cvterm.name)::text = 'DPE1_motif'::text)) OR ((cvterm.name)::text = 'DMv1_motif'::text)) OR ((cvterm.name)::text = 'NDM2_motif'::text)) OR ((cvterm.name)::text = 'NDM3_motif'::text)) OR ((cvterm.name)::text = 'core_promoter_element'::text)) OR ((cvterm.name)::text = 'regulatory_promoter_element'::text)) OR ((cvterm.name)::text = 'INR_motif'::text)) OR ((cvterm.name)::text = 'DPE_motif'::text)) OR ((cvterm.name)::text = 'BREu_motif'::text)) OR ((cvterm.name)::text = 'TATA_box'::text)) OR ((cvterm.name)::text = 'A_box'::text)) OR ((cvterm.name)::text = 'B_box'::text)) OR ((cvterm.name)::text = 'C_box'::text)) OR ((cvterm.name)::text = 'MTE'::text)) OR ((cvterm.name)::text = 'BREd_motif'::text)) OR ((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'proximal_promoter_element'::text)) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'A_minor_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_junction_loop'::text)) OR ((cvterm.name)::text = 'hammerhead_ribozyme'::text)) OR ((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'K_turn_RNA_motif'::text)) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_hook_turn'::text)) OR ((cvterm.name)::text = 'nucleotide_motif'::text));
- --
- -- Name: nucleotide_to_protein_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW nucleotide_to_protein_binding_site AS
- SELECT feature.feature_id AS nucleotide_to_protein_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((cvterm.name)::text = 'nuclease_binding_site'::text) OR ((cvterm.name)::text = 'TF_binding_site'::text)) OR ((cvterm.name)::text = 'histone_binding_site'::text)) OR ((cvterm.name)::text = 'insulator_binding_site'::text)) OR ((cvterm.name)::text = 'enhancer_binding_site'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_sensitive_site'::text)) OR ((cvterm.name)::text = 'homing_endonuclease_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'group_1_intron_homing_endonuclease_target_region'::text)) OR ((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'nucleotide_to_protein_binding_site'::text));
- --
- -- Name: octamer_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW octamer_motif AS
- SELECT feature.feature_id AS octamer_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'octamer_motif'::text);
- --
- -- Name: oligo; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW oligo AS
- SELECT feature.feature_id AS oligo_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'aptamer'::text) OR ((cvterm.name)::text = 'probe'::text)) OR ((cvterm.name)::text = 'tag'::text)) OR ((cvterm.name)::text = 'ss_oligo'::text)) OR ((cvterm.name)::text = 'ds_oligo'::text)) OR ((cvterm.name)::text = 'DNAzyme'::text)) OR ((cvterm.name)::text = 'synthetic_oligo'::text)) OR ((cvterm.name)::text = 'DNA_aptamer'::text)) OR ((cvterm.name)::text = 'RNA_aptamer'::text)) OR ((cvterm.name)::text = 'microarray_oligo'::text)) OR ((cvterm.name)::text = 'SAGE_tag'::text)) OR ((cvterm.name)::text = 'STS'::text)) OR ((cvterm.name)::text = 'EST'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'five_prime_EST'::text)) OR ((cvterm.name)::text = 'three_prime_EST'::text)) OR ((cvterm.name)::text = 'UST'::text)) OR ((cvterm.name)::text = 'RST'::text)) OR ((cvterm.name)::text = 'three_prime_UST'::text)) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'three_prime_RST'::text)) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'primer'::text)) OR ((cvterm.name)::text = 'sequencing_primer'::text)) OR ((cvterm.name)::text = 'forward_primer'::text)) OR ((cvterm.name)::text = 'reverse_primer'::text)) OR ((cvterm.name)::text = 'ASPE_primer'::text)) OR ((cvterm.name)::text = 'dCAPS_primer'::text)) OR ((cvterm.name)::text = 'RNAi_reagent'::text)) OR ((cvterm.name)::text = 'DNA_constraint_sequence'::text)) OR ((cvterm.name)::text = 'morpholino_oligo'::text)) OR ((cvterm.name)::text = 'PNA_oligo'::text)) OR ((cvterm.name)::text = 'LNA_oligo'::text)) OR ((cvterm.name)::text = 'TNA_oligo'::text)) OR ((cvterm.name)::text = 'GNA_oligo'::text)) OR ((cvterm.name)::text = 'R_GNA_oligo'::text)) OR ((cvterm.name)::text = 'S_GNA_oligo'::text)) OR ((cvterm.name)::text = 'oligo'::text));
- --
- -- Name: oligo_u_tail; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW oligo_u_tail AS
- SELECT feature.feature_id AS oligo_u_tail_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'oligo_U_tail'::text);
- --
- -- Name: one_methyl_3_3_amino_three_carboxypropyl_pseudouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW one_methyl_3_3_amino_three_carboxypropyl_pseudouridine AS
- SELECT feature.feature_id AS one_methyl_3_3_amino_three_carboxypropyl_pseudouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine'::text);
- --
- -- Name: one_methyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW one_methyladenosine AS
- SELECT feature.feature_id AS one_methyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'one_methyladenosine'::text);
- --
- -- Name: one_methylguanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW one_methylguanosine AS
- SELECT feature.feature_id AS one_methylguanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'one_methylguanosine'::text);
- --
- -- Name: one_methylinosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW one_methylinosine AS
- SELECT feature.feature_id AS one_methylinosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'one_methylinosine'::text);
- --
- -- Name: one_methylpseudouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW one_methylpseudouridine AS
- SELECT feature.feature_id AS one_methylpseudouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'one_methylpseudouridine'::text);
- --
- -- Name: one_two_prime_o_dimethyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW one_two_prime_o_dimethyladenosine AS
- SELECT feature.feature_id AS one_two_prime_o_dimethyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'one_two_prime_O_dimethyladenosine'::text);
- --
- -- Name: one_two_prime_o_dimethylguanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW one_two_prime_o_dimethylguanosine AS
- SELECT feature.feature_id AS one_two_prime_o_dimethylguanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'one_two_prime_O_dimethylguanosine'::text);
- --
- -- Name: one_two_prime_o_dimethylinosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW one_two_prime_o_dimethylinosine AS
- SELECT feature.feature_id AS one_two_prime_o_dimethylinosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'one_two_prime_O_dimethylinosine'::text);
- --
- -- Name: open_chromatin_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW open_chromatin_region AS
- SELECT feature.feature_id AS open_chromatin_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'open_chromatin_region'::text);
- --
- -- Name: operator; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW operator AS
- SELECT feature.feature_id AS operator_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'operator'::text);
- --
- -- Name: operon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW operon AS
- SELECT feature.feature_id AS operon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'operon'::text);
- --
- -- Name: operon_member; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW operon_member AS
- SELECT feature.feature_id AS operon_member_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'operon_member'::text);
- --
- -- Name: orf; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW orf AS
- SELECT feature.feature_id AS orf_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'mini_gene'::text) OR ((cvterm.name)::text = 'rescue_mini_gene'::text)) OR ((cvterm.name)::text = 'ORF'::text));
- --
- -- Name: organelle_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW organelle_sequence AS
- SELECT feature.feature_id AS organelle_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((cvterm.name)::text = 'macronuclear_sequence'::text) OR ((cvterm.name)::text = 'micronuclear_sequence'::text)) OR ((cvterm.name)::text = 'mitochondrial_sequence'::text)) OR ((cvterm.name)::text = 'nuclear_sequence'::text)) OR ((cvterm.name)::text = 'nucleomorphic_sequence'::text)) OR ((cvterm.name)::text = 'plastid_sequence'::text)) OR ((cvterm.name)::text = 'mitochondrial_DNA'::text)) OR ((cvterm.name)::text = 'apicoplast_sequence'::text)) OR ((cvterm.name)::text = 'chromoplast_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_sequence'::text)) OR ((cvterm.name)::text = 'cyanelle_sequence'::text)) OR ((cvterm.name)::text = 'leucoplast_sequence'::text)) OR ((cvterm.name)::text = 'proplastid_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_DNA'::text)) OR ((cvterm.name)::text = 'organelle_sequence'::text));
- --
- -- Name: oric; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW oric AS
- SELECT feature.feature_id AS oric_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'oriC'::text);
- --
- -- Name: origin_of_replication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW origin_of_replication AS
- SELECT feature.feature_id AS origin_of_replication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'D_loop'::text) OR ((cvterm.name)::text = 'ARS'::text)) OR ((cvterm.name)::text = 'oriT'::text)) OR ((cvterm.name)::text = 'amplification_origin'::text)) OR ((cvterm.name)::text = 'oriV'::text)) OR ((cvterm.name)::text = 'oriC'::text)) OR ((cvterm.name)::text = 'origin_of_replication'::text));
- --
- -- Name: orit; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW orit AS
- SELECT feature.feature_id AS orit_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'oriT'::text);
- --
- -- Name: oriv; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW oriv AS
- SELECT feature.feature_id AS oriv_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'oriV'::text);
- --
- -- Name: orphan; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW orphan AS
- SELECT feature.feature_id AS orphan_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'orphan'::text);
- --
- -- Name: orphan_cds; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW orphan_cds AS
- SELECT feature.feature_id AS orphan_cds_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'orphan_CDS'::text);
- --
- -- Name: orthologous; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW orthologous AS
- SELECT feature.feature_id AS orthologous_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'orthologous'::text);
- --
- -- Name: orthologous_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW orthologous_region AS
- SELECT feature.feature_id AS orthologous_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'orthologous_region'::text);
- --
- -- Name: outron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW outron AS
- SELECT feature.feature_id AS outron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'outron'::text);
- --
- -- Name: overlapping; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW overlapping AS
- SELECT feature.feature_id AS overlapping_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((cvterm.name)::text = 'inside_intron'::text) OR ((cvterm.name)::text = 'five_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'five_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'antisense'::text)) OR ((cvterm.name)::text = 'inside_intron_antiparallel'::text)) OR ((cvterm.name)::text = 'inside_intron_parallel'::text)) OR ((cvterm.name)::text = 'overlapping'::text));
- --
- -- Name: overlapping_est_set; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW overlapping_est_set AS
- SELECT feature.feature_id AS overlapping_est_set_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'overlapping_EST_set'::text);
- --
- -- Name: overlapping_feature_set; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW overlapping_feature_set AS
- SELECT feature.feature_id AS overlapping_feature_set_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'overlapping_EST_set'::text) OR ((cvterm.name)::text = 'overlapping_feature_set'::text));
- --
- -- Name: oxys_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW oxys_rna AS
- SELECT feature.feature_id AS oxys_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'OxyS_RNA'::text);
- --
- -- Name: p_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW p_element AS
- SELECT feature.feature_id AS p_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'p_element'::text);
- --
- -- Name: pac; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pac AS
- SELECT feature.feature_id AS pac_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'PAC'::text);
- --
- -- Name: pac_end; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pac_end AS
- SELECT feature.feature_id AS pac_end_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'PAC_end'::text);
- --
- -- Name: paired_end_fragment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW paired_end_fragment AS
- SELECT feature.feature_id AS paired_end_fragment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'paired_end_fragment'::text);
- --
- -- Name: paracentric; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW paracentric AS
- SELECT feature.feature_id AS paracentric_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'paracentric'::text);
- --
- -- Name: paracentric_inversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW paracentric_inversion AS
- SELECT feature.feature_id AS paracentric_inversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'paracentric_inversion'::text);
- --
- -- Name: parallel_beta_strand; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW parallel_beta_strand AS
- SELECT feature.feature_id AS parallel_beta_strand_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'parallel_beta_strand'::text);
- --
- -- Name: paralogous; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW paralogous AS
- SELECT feature.feature_id AS paralogous_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'paralogous'::text);
- --
- -- Name: paralogous_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW paralogous_region AS
- SELECT feature.feature_id AS paralogous_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'paralogous_region'::text);
- --
- -- Name: partially_characterised_chromosomal_mutation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW partially_characterised_chromosomal_mutation AS
- SELECT feature.feature_id AS partially_characterised_chromosomal_mutation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'partially_characterised_chromosomal_mutation'::text);
- --
- -- Name: partially_processed_cdna_clone; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW partially_processed_cdna_clone AS
- SELECT feature.feature_id AS partially_processed_cdna_clone_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text);
- --
- -- Name: paternal_uniparental_disomy; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW paternal_uniparental_disomy AS
- SELECT feature.feature_id AS paternal_uniparental_disomy_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'paternal_uniparental_disomy'::text);
- --
- -- Name: paternal_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW paternal_variant AS
- SELECT feature.feature_id AS paternal_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'paternal_variant'::text);
- --
- -- Name: paternally_imprinted; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW paternally_imprinted AS
- SELECT feature.feature_id AS paternally_imprinted_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'paternally_imprinted'::text);
- --
- -- Name: paternally_imprinted_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW paternally_imprinted_gene AS
- SELECT feature.feature_id AS paternally_imprinted_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'paternally_imprinted_gene'::text);
- --
- -- Name: pathogenic_island; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pathogenic_island AS
- SELECT feature.feature_id AS pathogenic_island_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pathogenic_island'::text);
- --
- -- Name: pcr_product; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pcr_product AS
- SELECT feature.feature_id AS pcr_product_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'RAPD'::text) OR ((cvterm.name)::text = 'PCR_product'::text));
- --
- -- Name: pedigree_specific_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pedigree_specific_variant AS
- SELECT feature.feature_id AS pedigree_specific_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pedigree_specific_variant'::text);
- --
- -- Name: peptide_coil; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW peptide_coil AS
- SELECT feature.feature_id AS peptide_coil_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'peptide_coil'::text);
- --
- -- Name: peptide_collection; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW peptide_collection AS
- SELECT feature.feature_id AS peptide_collection_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'peptide_collection'::text);
- --
- -- Name: peptide_helix; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW peptide_helix AS
- SELECT feature.feature_id AS peptide_helix_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'left_handed_peptide_helix'::text) OR ((cvterm.name)::text = 'right_handed_peptide_helix'::text)) OR ((cvterm.name)::text = 'alpha_helix'::text)) OR ((cvterm.name)::text = 'pi_helix'::text)) OR ((cvterm.name)::text = 'three_ten_helix'::text)) OR ((cvterm.name)::text = 'peptide_helix'::text));
- --
- -- Name: peptide_localization_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW peptide_localization_signal AS
- SELECT feature.feature_id AS peptide_localization_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'signal_peptide'::text) OR ((cvterm.name)::text = 'transit_peptide'::text)) OR ((cvterm.name)::text = 'nuclear_localization_signal'::text)) OR ((cvterm.name)::text = 'endosomal_localization_signal'::text)) OR ((cvterm.name)::text = 'lysosomal_localization_signal'::text)) OR ((cvterm.name)::text = 'nuclear_export_signal'::text)) OR ((cvterm.name)::text = 'nuclear_rim_localization_signal'::text)) OR ((cvterm.name)::text = 'peptide_localization_signal'::text));
- --
- -- Name: peptidyl; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW peptidyl AS
- SELECT feature.feature_id AS peptidyl_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'peptidyl'::text);
- --
- -- Name: pericentric; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pericentric AS
- SELECT feature.feature_id AS pericentric_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pericentric'::text);
- --
- -- Name: pericentric_inversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pericentric_inversion AS
- SELECT feature.feature_id AS pericentric_inversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pericentric_inversion'::text);
- --
- -- Name: peroxywybutosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW peroxywybutosine AS
- SELECT feature.feature_id AS peroxywybutosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'peroxywybutosine'::text);
- --
- -- Name: phage_rna_polymerase_promoter; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW phage_rna_polymerase_promoter AS
- SELECT feature.feature_id AS phage_rna_polymerase_promoter_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text) OR ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'Phage_RNA_Polymerase_Promoter'::text));
- --
- -- Name: phage_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW phage_sequence AS
- SELECT feature.feature_id AS phage_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'phage_sequence'::text);
- --
- -- Name: phagemid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW phagemid AS
- SELECT feature.feature_id AS phagemid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'phagemid'::text);
- --
- -- Name: phe_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW phe_trna_primary_transcript AS
- SELECT feature.feature_id AS phe_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'phenylalanine_tRNA_primary_transcript'::text);
- --
- -- Name: phenylalanine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW phenylalanine AS
- SELECT feature.feature_id AS phenylalanine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'phenylalanine'::text);
- --
- -- Name: phenylalanyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW phenylalanyl_trna AS
- SELECT feature.feature_id AS phenylalanyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'phenylalanyl_tRNA'::text);
- --
- -- Name: pi_helix; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pi_helix AS
- SELECT feature.feature_id AS pi_helix_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pi_helix'::text);
- --
- -- Name: pirna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pirna AS
- SELECT feature.feature_id AS pirna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'piRNA'::text);
- --
- -- Name: pirna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pirna_gene AS
- SELECT feature.feature_id AS pirna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'piRNA_gene'::text);
- --
- -- Name: plasmid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW plasmid AS
- SELECT feature.feature_id AS plasmid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((cvterm.name)::text = 'engineered_plasmid'::text) OR ((cvterm.name)::text = 'episome'::text)) OR ((cvterm.name)::text = 'natural_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'plasmid'::text));
- --
- -- Name: plasmid_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW plasmid_gene AS
- SELECT feature.feature_id AS plasmid_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'plasmid_gene'::text);
- --
- -- Name: plasmid_location; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW plasmid_location AS
- SELECT feature.feature_id AS plasmid_location_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'plasmid_location'::text);
- --
- -- Name: plasmid_vector; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW plasmid_vector AS
- SELECT feature.feature_id AS plasmid_vector_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'plasmid_vector'::text);
- --
- -- Name: plastid_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW plastid_gene AS
- SELECT feature.feature_id AS plastid_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'apicoplast_gene'::text) OR ((cvterm.name)::text = 'ct_gene'::text)) OR ((cvterm.name)::text = 'chromoplast_gene'::text)) OR ((cvterm.name)::text = 'cyanelle_gene'::text)) OR ((cvterm.name)::text = 'leucoplast_gene'::text)) OR ((cvterm.name)::text = 'proplastid_gene'::text)) OR ((cvterm.name)::text = 'plastid_gene'::text));
- --
- -- Name: plastid_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW plastid_sequence AS
- SELECT feature.feature_id AS plastid_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'apicoplast_sequence'::text) OR ((cvterm.name)::text = 'chromoplast_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_sequence'::text)) OR ((cvterm.name)::text = 'cyanelle_sequence'::text)) OR ((cvterm.name)::text = 'leucoplast_sequence'::text)) OR ((cvterm.name)::text = 'proplastid_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_DNA'::text)) OR ((cvterm.name)::text = 'plastid_sequence'::text));
- --
- -- Name: plus_1_frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW plus_1_frameshift AS
- SELECT feature.feature_id AS plus_1_frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'plus_1_frameshift'::text);
- --
- -- Name: plus_1_frameshift_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW plus_1_frameshift_variant AS
- SELECT feature.feature_id AS plus_1_frameshift_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'plus_1_frameshift_variant'::text);
- --
- -- Name: plus_1_translational_frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW plus_1_translational_frameshift AS
- SELECT feature.feature_id AS plus_1_translational_frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'plus_1_translational_frameshift'::text);
- --
- -- Name: plus_1_translationally_frameshifted; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW plus_1_translationally_frameshifted AS
- SELECT feature.feature_id AS plus_1_translationally_frameshifted_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'plus_1_translationally_frameshifted'::text);
- --
- -- Name: plus_2_frameshift_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW plus_2_frameshift_variant AS
- SELECT feature.feature_id AS plus_2_frameshift_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'plus_2_frameshift variant'::text);
- --
- -- Name: plus_2_framshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW plus_2_framshift AS
- SELECT feature.feature_id AS plus_2_framshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'plus_2_framshift'::text);
- --
- -- Name: plus_2_translational_frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW plus_2_translational_frameshift AS
- SELECT feature.feature_id AS plus_2_translational_frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'plus_2_translational_frameshift'::text);
- --
- -- Name: pna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pna AS
- SELECT feature.feature_id AS pna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'PNA'::text);
- --
- -- Name: pna_oligo; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pna_oligo AS
- SELECT feature.feature_id AS pna_oligo_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'PNA_oligo'::text);
- --
- -- Name: point_centromere; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW point_centromere AS
- SELECT feature.feature_id AS point_centromere_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'point_centromere'::text);
- --
- -- Name: point_mutation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW point_mutation AS
- SELECT feature.feature_id AS point_mutation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'point_mutation'::text);
- --
- -- Name: polinton; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polinton AS
- SELECT feature.feature_id AS polinton_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polinton'::text);
- --
- -- Name: polya_primed_cdna_clone; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polya_primed_cdna_clone AS
- SELECT feature.feature_id AS polya_primed_cdna_clone_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text);
- --
- -- Name: polya_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polya_sequence AS
- SELECT feature.feature_id AS polya_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polyA_sequence'::text);
- --
- -- Name: polya_signal_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polya_signal_sequence AS
- SELECT feature.feature_id AS polya_signal_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polyA_signal_sequence'::text);
- --
- -- Name: polya_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polya_site AS
- SELECT feature.feature_id AS polya_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polyA_site'::text);
- --
- -- Name: polyadenylated; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polyadenylated AS
- SELECT feature.feature_id AS polyadenylated_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polyadenylated'::text);
- --
- -- Name: polyadenylated_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polyadenylated_mrna AS
- SELECT feature.feature_id AS polyadenylated_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polyadenylated_mRNA'::text);
- --
- -- Name: polyadenylation_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polyadenylation_variant AS
- SELECT feature.feature_id AS polyadenylation_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'increased_polyadenylation_variant'::text) OR ((cvterm.name)::text = 'decreased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'polyadenylation_variant'::text));
- --
- -- Name: polycistronic; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polycistronic AS
- SELECT feature.feature_id AS polycistronic_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'dicistronic'::text) OR ((cvterm.name)::text = 'polycistronic'::text));
- --
- -- Name: polycistronic_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polycistronic_mrna AS
- SELECT feature.feature_id AS polycistronic_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'dicistronic_mRNA'::text) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text));
- --
- -- Name: polycistronic_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polycistronic_primary_transcript AS
- SELECT feature.feature_id AS polycistronic_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'dicistronic_primary_transcript'::text) OR ((cvterm.name)::text = 'polycistronic_primary_transcript'::text));
- --
- -- Name: polycistronic_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polycistronic_transcript AS
- SELECT feature.feature_id AS polycistronic_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'dicistronic_transcript'::text) OR ((cvterm.name)::text = 'polycistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'polycistronic_transcript'::text));
- --
- -- Name: polymer_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polymer_attribute AS
- SELECT feature.feature_id AS polymer_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((cvterm.name)::text = 'nucleic_acid'::text) OR ((cvterm.name)::text = 'synthetic_sequence'::text)) OR ((cvterm.name)::text = 'topology_attribute'::text)) OR ((cvterm.name)::text = 'peptidyl'::text)) OR ((cvterm.name)::text = 'DNA'::text)) OR ((cvterm.name)::text = 'RNA'::text)) OR ((cvterm.name)::text = 'morpholino_backbone'::text)) OR ((cvterm.name)::text = 'PNA'::text)) OR ((cvterm.name)::text = 'LNA'::text)) OR ((cvterm.name)::text = 'TNA'::text)) OR ((cvterm.name)::text = 'GNA'::text)) OR ((cvterm.name)::text = 'cDNA'::text)) OR ((cvterm.name)::text = 'genomic_DNA'::text)) OR ((cvterm.name)::text = 'single_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'double_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'R_GNA'::text)) OR ((cvterm.name)::text = 'S_GNA'::text)) OR ((cvterm.name)::text = 'random_sequence'::text)) OR ((cvterm.name)::text = 'designed_sequence'::text)) OR ((cvterm.name)::text = 'linear'::text)) OR ((cvterm.name)::text = 'circular'::text)) OR ((cvterm.name)::text = 'polymer_attribute'::text));
- --
- -- Name: polymerase_synthesis_read; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polymerase_synthesis_read AS
- SELECT feature.feature_id AS polymerase_synthesis_read_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polymerase_synthesis_read'::text);
- --
- -- Name: polymorphic_sequence_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polymorphic_sequence_variant AS
- SELECT feature.feature_id AS polymorphic_sequence_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polymorphic_sequence_variant'::text);
- --
- -- Name: polymorphic_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polymorphic_variant AS
- SELECT feature.feature_id AS polymorphic_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polymorphic_variant'::text);
- --
- -- Name: polypeptide; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide AS
- SELECT feature.feature_id AS polypeptide_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide'::text);
- --
- -- Name: polypeptide_binding_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_binding_motif AS
- SELECT feature.feature_id AS polypeptide_binding_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_binding_motif'::text);
- --
- -- Name: polypeptide_calcium_ion_contact_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_calcium_ion_contact_site AS
- SELECT feature.feature_id AS polypeptide_calcium_ion_contact_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text);
- --
- -- Name: polypeptide_catalytic_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_catalytic_motif AS
- SELECT feature.feature_id AS polypeptide_catalytic_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_catalytic_motif'::text);
- --
- -- Name: polypeptide_cobalt_ion_contact_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_cobalt_ion_contact_site AS
- SELECT feature.feature_id AS polypeptide_cobalt_ion_contact_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text);
- --
- -- Name: polypeptide_conserved_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_conserved_motif AS
- SELECT feature.feature_id AS polypeptide_conserved_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_conserved_motif'::text);
- --
- -- Name: polypeptide_conserved_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_conserved_region AS
- SELECT feature.feature_id AS polypeptide_conserved_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'polypeptide_domain'::text) OR ((cvterm.name)::text = 'polypeptide_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_repeat'::text)) OR ((cvterm.name)::text = 'biochemical_region_of_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_conserved_motif'::text)) OR ((cvterm.name)::text = 'post_translationally_modified_region'::text)) OR ((cvterm.name)::text = 'conformational_switch'::text)) OR ((cvterm.name)::text = 'molecular_contact_region'::text)) OR ((cvterm.name)::text = 'polypeptide_binding_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_catalytic_motif'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text)) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_conserved_region'::text));
- --
- -- Name: polypeptide_copper_ion_contact_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_copper_ion_contact_site AS
- SELECT feature.feature_id AS polypeptide_copper_ion_contact_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text);
- --
- -- Name: polypeptide_dna_contact; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_dna_contact AS
- SELECT feature.feature_id AS polypeptide_dna_contact_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_DNA_contact'::text);
- --
- -- Name: polypeptide_domain; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_domain AS
- SELECT feature.feature_id AS polypeptide_domain_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_domain'::text);
- --
- -- Name: polypeptide_function_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_function_variant AS
- SELECT feature.feature_id AS polypeptide_function_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'polypeptide_gain_of_function_variant'::text) OR ((cvterm.name)::text = 'polypeptide_localization_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_loss_of_function_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_post_translational_processing_variant'::text)) OR ((cvterm.name)::text = 'inactive_ligand_binding_site'::text)) OR ((cvterm.name)::text = 'polypeptide_partial_loss_of_function'::text)) OR ((cvterm.name)::text = 'inactive_catalytic_site'::text)) OR ((cvterm.name)::text = 'polypeptide_function_variant'::text));
- --
- -- Name: polypeptide_fusion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_fusion AS
- SELECT feature.feature_id AS polypeptide_fusion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_fusion'::text);
- --
- -- Name: polypeptide_gain_of_function_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_gain_of_function_variant AS
- SELECT feature.feature_id AS polypeptide_gain_of_function_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_gain_of_function_variant'::text);
- --
- -- Name: polypeptide_iron_ion_contact_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_iron_ion_contact_site AS
- SELECT feature.feature_id AS polypeptide_iron_ion_contact_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text);
- --
- -- Name: polypeptide_ligand_contact; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_ligand_contact AS
- SELECT feature.feature_id AS polypeptide_ligand_contact_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_ligand_contact'::text);
- --
- -- Name: polypeptide_localization_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_localization_variant AS
- SELECT feature.feature_id AS polypeptide_localization_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_localization_variant'::text);
- --
- -- Name: polypeptide_loss_of_function_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_loss_of_function_variant AS
- SELECT feature.feature_id AS polypeptide_loss_of_function_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'inactive_ligand_binding_site'::text) OR ((cvterm.name)::text = 'polypeptide_partial_loss_of_function'::text)) OR ((cvterm.name)::text = 'inactive_catalytic_site'::text)) OR ((cvterm.name)::text = 'polypeptide_loss_of_function_variant'::text));
- --
- -- Name: polypeptide_magnesium_ion_contact_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_magnesium_ion_contact_site AS
- SELECT feature.feature_id AS polypeptide_magnesium_ion_contact_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text);
- --
- -- Name: polypeptide_manganese_ion_contact_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_manganese_ion_contact_site AS
- SELECT feature.feature_id AS polypeptide_manganese_ion_contact_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text);
- --
- -- Name: polypeptide_metal_contact; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_metal_contact AS
- SELECT feature.feature_id AS polypeptide_metal_contact_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text));
- --
- -- Name: polypeptide_molybdenum_ion_contact_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_molybdenum_ion_contact_site AS
- SELECT feature.feature_id AS polypeptide_molybdenum_ion_contact_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text);
- --
- -- Name: polypeptide_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_motif AS
- SELECT feature.feature_id AS polypeptide_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'biochemical_region_of_peptide'::text) OR ((cvterm.name)::text = 'polypeptide_conserved_motif'::text)) OR ((cvterm.name)::text = 'post_translationally_modified_region'::text)) OR ((cvterm.name)::text = 'conformational_switch'::text)) OR ((cvterm.name)::text = 'molecular_contact_region'::text)) OR ((cvterm.name)::text = 'polypeptide_binding_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_catalytic_motif'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text)) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_motif'::text));
- --
- -- Name: polypeptide_nest_left_right_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_nest_left_right_motif AS
- SELECT feature.feature_id AS polypeptide_nest_left_right_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_nest_left_right_motif'::text);
- --
- -- Name: polypeptide_nest_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_nest_motif AS
- SELECT feature.feature_id AS polypeptide_nest_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'polypeptide_nest_left_right_motif'::text) OR ((cvterm.name)::text = 'polypeptide_nest_right_left_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_motif'::text));
- --
- -- Name: polypeptide_nest_right_left_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_nest_right_left_motif AS
- SELECT feature.feature_id AS polypeptide_nest_right_left_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_nest_right_left_motif'::text);
- --
- -- Name: polypeptide_nickel_ion_contact_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_nickel_ion_contact_site AS
- SELECT feature.feature_id AS polypeptide_nickel_ion_contact_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text);
- --
- -- Name: polypeptide_partial_loss_of_function; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_partial_loss_of_function AS
- SELECT feature.feature_id AS polypeptide_partial_loss_of_function_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_partial_loss_of_function'::text);
- --
- -- Name: polypeptide_post_translational_processing_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_post_translational_processing_variant AS
- SELECT feature.feature_id AS polypeptide_post_translational_processing_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_post_translational_processing_variant'::text);
- --
- -- Name: polypeptide_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_region AS
- SELECT feature.feature_id AS polypeptide_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'mature_protein_region'::text) OR ((cvterm.name)::text = 'immature_peptide_region'::text)) OR ((cvterm.name)::text = 'compositionally_biased_region_of_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_structural_region'::text)) OR ((cvterm.name)::text = 'polypeptide_variation_site'::text)) OR ((cvterm.name)::text = 'peptide_localization_signal'::text)) OR ((cvterm.name)::text = 'cleaved_peptide_region'::text)) OR ((cvterm.name)::text = 'hydrophobic_region_of_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_conserved_region'::text)) OR ((cvterm.name)::text = 'active_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_domain'::text)) OR ((cvterm.name)::text = 'membrane_structure'::text)) OR ((cvterm.name)::text = 'extramembrane_polypeptide_region'::text)) OR ((cvterm.name)::text = 'intramembrane_polypeptide_region'::text)) OR ((cvterm.name)::text = 'polypeptide_secondary_structure'::text)) OR ((cvterm.name)::text = 'polypeptide_structural_motif'::text)) OR ((cvterm.name)::text = 'intrinsically_unstructured_polypeptide_region'::text)) OR ((cvterm.name)::text = 'cytoplasmic_polypeptide_region'::text)) OR ((cvterm.name)::text = 'non_cytoplasmic_polypeptide_region'::text)) OR ((cvterm.name)::text = 'membrane_peptide_loop'::text)) OR ((cvterm.name)::text = 'transmembrane_polypeptide_region'::text)) OR ((cvterm.name)::text = 'asx_motif'::text)) OR ((cvterm.name)::text = 'beta_bulge'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop'::text)) OR ((cvterm.name)::text = 'beta_strand'::text)) OR ((cvterm.name)::text = 'peptide_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_motif'::text)) OR ((cvterm.name)::text = 'schellmann_loop'::text)) OR ((cvterm.name)::text = 'serine_threonine_motif'::text)) OR ((cvterm.name)::text = 'serine_threonine_staple_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_turn_motif'::text)) OR ((cvterm.name)::text = 'catmat_left_handed_three'::text)) OR ((cvterm.name)::text = 'catmat_left_handed_four'::text)) OR ((cvterm.name)::text = 'catmat_right_handed_three'::text)) OR ((cvterm.name)::text = 'catmat_right_handed_four'::text)) OR ((cvterm.name)::text = 'alpha_beta_motif'::text)) OR ((cvterm.name)::text = 'peptide_coil'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop_five'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop_six'::text)) OR ((cvterm.name)::text = 'antiparallel_beta_strand'::text)) OR ((cvterm.name)::text = 'parallel_beta_strand'::text)) OR ((cvterm.name)::text = 'left_handed_peptide_helix'::text)) OR ((cvterm.name)::text = 'right_handed_peptide_helix'::text)) OR ((cvterm.name)::text = 'alpha_helix'::text)) OR ((cvterm.name)::text = 'pi_helix'::text)) OR ((cvterm.name)::text = 'three_ten_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_left_right_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_right_left_motif'::text)) OR ((cvterm.name)::text = 'schellmann_loop_seven'::text)) OR ((cvterm.name)::text = 'schellmann_loop_six'::text)) OR ((cvterm.name)::text = 'asx_turn'::text)) OR ((cvterm.name)::text = 'beta_turn'::text)) OR ((cvterm.name)::text = 'gamma_turn'::text)) OR ((cvterm.name)::text = 'serine_threonine_turn'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six'::text)) OR ((cvterm.name)::text = 'beta_turn_type_eight'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_b'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_one'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'gamma_turn_classic'::text)) OR ((cvterm.name)::text = 'gamma_turn_inverse'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'coiled_coil'::text)) OR ((cvterm.name)::text = 'helix_turn_helix'::text)) OR ((cvterm.name)::text = 'natural_variant_site'::text)) OR ((cvterm.name)::text = 'mutated_variant_site'::text)) OR ((cvterm.name)::text = 'alternate_sequence_site'::text)) OR ((cvterm.name)::text = 'signal_peptide'::text)) OR ((cvterm.name)::text = 'transit_peptide'::text)) OR ((cvterm.name)::text = 'nuclear_localization_signal'::text)) OR ((cvterm.name)::text = 'endosomal_localization_signal'::text)) OR ((cvterm.name)::text = 'lysosomal_localization_signal'::text)) OR ((cvterm.name)::text = 'nuclear_export_signal'::text)) OR ((cvterm.name)::text = 'nuclear_rim_localization_signal'::text)) OR ((cvterm.name)::text = 'cleaved_initiator_methionine'::text)) OR ((cvterm.name)::text = 'intein'::text)) OR ((cvterm.name)::text = 'propeptide_cleavage_site'::text)) OR ((cvterm.name)::text = 'propeptide'::text)) OR ((cvterm.name)::text = 'cleaved_for_gpi_anchor_region'::text)) OR ((cvterm.name)::text = 'lipoprotein_signal_peptide'::text)) OR ((cvterm.name)::text = 'n_terminal_region'::text)) OR ((cvterm.name)::text = 'c_terminal_region'::text)) OR ((cvterm.name)::text = 'central_hydrophobic_region_of_signal_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_domain'::text)) OR ((cvterm.name)::text = 'polypeptide_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_repeat'::text)) OR ((cvterm.name)::text = 'biochemical_region_of_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_conserved_motif'::text)) OR ((cvterm.name)::text = 'post_translationally_modified_region'::text)) OR ((cvterm.name)::text = 'conformational_switch'::text)) OR ((cvterm.name)::text = 'molecular_contact_region'::text)) OR ((cvterm.name)::text = 'polypeptide_binding_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_catalytic_motif'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text)) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_region'::text));
- --
- -- Name: polypeptide_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_repeat AS
- SELECT feature.feature_id AS polypeptide_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_repeat'::text);
- --
- -- Name: polypeptide_secondary_structure; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_secondary_structure AS
- SELECT feature.feature_id AS polypeptide_secondary_structure_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'asx_motif'::text) OR ((cvterm.name)::text = 'beta_bulge'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop'::text)) OR ((cvterm.name)::text = 'beta_strand'::text)) OR ((cvterm.name)::text = 'peptide_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_motif'::text)) OR ((cvterm.name)::text = 'schellmann_loop'::text)) OR ((cvterm.name)::text = 'serine_threonine_motif'::text)) OR ((cvterm.name)::text = 'serine_threonine_staple_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_turn_motif'::text)) OR ((cvterm.name)::text = 'catmat_left_handed_three'::text)) OR ((cvterm.name)::text = 'catmat_left_handed_four'::text)) OR ((cvterm.name)::text = 'catmat_right_handed_three'::text)) OR ((cvterm.name)::text = 'catmat_right_handed_four'::text)) OR ((cvterm.name)::text = 'alpha_beta_motif'::text)) OR ((cvterm.name)::text = 'peptide_coil'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop_five'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop_six'::text)) OR ((cvterm.name)::text = 'antiparallel_beta_strand'::text)) OR ((cvterm.name)::text = 'parallel_beta_strand'::text)) OR ((cvterm.name)::text = 'left_handed_peptide_helix'::text)) OR ((cvterm.name)::text = 'right_handed_peptide_helix'::text)) OR ((cvterm.name)::text = 'alpha_helix'::text)) OR ((cvterm.name)::text = 'pi_helix'::text)) OR ((cvterm.name)::text = 'three_ten_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_left_right_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_right_left_motif'::text)) OR ((cvterm.name)::text = 'schellmann_loop_seven'::text)) OR ((cvterm.name)::text = 'schellmann_loop_six'::text)) OR ((cvterm.name)::text = 'asx_turn'::text)) OR ((cvterm.name)::text = 'beta_turn'::text)) OR ((cvterm.name)::text = 'gamma_turn'::text)) OR ((cvterm.name)::text = 'serine_threonine_turn'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six'::text)) OR ((cvterm.name)::text = 'beta_turn_type_eight'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_b'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_one'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'gamma_turn_classic'::text)) OR ((cvterm.name)::text = 'gamma_turn_inverse'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'polypeptide_secondary_structure'::text));
- --
- -- Name: polypeptide_sequence_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_sequence_variant AS
- SELECT feature.feature_id AS polypeptide_sequence_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((cvterm.name)::text = 'amino_acid_deletion'::text) OR ((cvterm.name)::text = 'amino_acid_insertion'::text)) OR ((cvterm.name)::text = 'amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide'::text)) OR ((cvterm.name)::text = 'polypeptide_fusion'::text)) OR ((cvterm.name)::text = 'polypeptide_truncation'::text)) OR ((cvterm.name)::text = 'conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'non_conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'polypeptide_sequence_variant'::text));
- --
- -- Name: polypeptide_sequencing_information; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_sequencing_information AS
- SELECT feature.feature_id AS polypeptide_sequencing_information_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'non_adjacent_residues'::text) OR ((cvterm.name)::text = 'non_terminal_residue'::text)) OR ((cvterm.name)::text = 'sequence_conflict'::text)) OR ((cvterm.name)::text = 'sequence_uncertainty'::text)) OR ((cvterm.name)::text = 'contig_collection'::text)) OR ((cvterm.name)::text = 'polypeptide_sequencing_information'::text));
- --
- -- Name: polypeptide_structural_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_structural_motif AS
- SELECT feature.feature_id AS polypeptide_structural_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'coiled_coil'::text) OR ((cvterm.name)::text = 'helix_turn_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_structural_motif'::text));
- --
- -- Name: polypeptide_structural_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_structural_region AS
- SELECT feature.feature_id AS polypeptide_structural_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'polypeptide_domain'::text) OR ((cvterm.name)::text = 'membrane_structure'::text)) OR ((cvterm.name)::text = 'extramembrane_polypeptide_region'::text)) OR ((cvterm.name)::text = 'intramembrane_polypeptide_region'::text)) OR ((cvterm.name)::text = 'polypeptide_secondary_structure'::text)) OR ((cvterm.name)::text = 'polypeptide_structural_motif'::text)) OR ((cvterm.name)::text = 'intrinsically_unstructured_polypeptide_region'::text)) OR ((cvterm.name)::text = 'cytoplasmic_polypeptide_region'::text)) OR ((cvterm.name)::text = 'non_cytoplasmic_polypeptide_region'::text)) OR ((cvterm.name)::text = 'membrane_peptide_loop'::text)) OR ((cvterm.name)::text = 'transmembrane_polypeptide_region'::text)) OR ((cvterm.name)::text = 'asx_motif'::text)) OR ((cvterm.name)::text = 'beta_bulge'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop'::text)) OR ((cvterm.name)::text = 'beta_strand'::text)) OR ((cvterm.name)::text = 'peptide_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_motif'::text)) OR ((cvterm.name)::text = 'schellmann_loop'::text)) OR ((cvterm.name)::text = 'serine_threonine_motif'::text)) OR ((cvterm.name)::text = 'serine_threonine_staple_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_turn_motif'::text)) OR ((cvterm.name)::text = 'catmat_left_handed_three'::text)) OR ((cvterm.name)::text = 'catmat_left_handed_four'::text)) OR ((cvterm.name)::text = 'catmat_right_handed_three'::text)) OR ((cvterm.name)::text = 'catmat_right_handed_four'::text)) OR ((cvterm.name)::text = 'alpha_beta_motif'::text)) OR ((cvterm.name)::text = 'peptide_coil'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop_five'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop_six'::text)) OR ((cvterm.name)::text = 'antiparallel_beta_strand'::text)) OR ((cvterm.name)::text = 'parallel_beta_strand'::text)) OR ((cvterm.name)::text = 'left_handed_peptide_helix'::text)) OR ((cvterm.name)::text = 'right_handed_peptide_helix'::text)) OR ((cvterm.name)::text = 'alpha_helix'::text)) OR ((cvterm.name)::text = 'pi_helix'::text)) OR ((cvterm.name)::text = 'three_ten_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_left_right_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_right_left_motif'::text)) OR ((cvterm.name)::text = 'schellmann_loop_seven'::text)) OR ((cvterm.name)::text = 'schellmann_loop_six'::text)) OR ((cvterm.name)::text = 'asx_turn'::text)) OR ((cvterm.name)::text = 'beta_turn'::text)) OR ((cvterm.name)::text = 'gamma_turn'::text)) OR ((cvterm.name)::text = 'serine_threonine_turn'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six'::text)) OR ((cvterm.name)::text = 'beta_turn_type_eight'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_b'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_one'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'gamma_turn_classic'::text)) OR ((cvterm.name)::text = 'gamma_turn_inverse'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'coiled_coil'::text)) OR ((cvterm.name)::text = 'helix_turn_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_structural_region'::text));
- --
- -- Name: polypeptide_truncation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_truncation AS
- SELECT feature.feature_id AS polypeptide_truncation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_truncation'::text);
- --
- -- Name: polypeptide_tungsten_ion_contact_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_tungsten_ion_contact_site AS
- SELECT feature.feature_id AS polypeptide_tungsten_ion_contact_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text);
- --
- -- Name: polypeptide_turn_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_turn_motif AS
- SELECT feature.feature_id AS polypeptide_turn_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((cvterm.name)::text = 'asx_turn'::text) OR ((cvterm.name)::text = 'beta_turn'::text)) OR ((cvterm.name)::text = 'gamma_turn'::text)) OR ((cvterm.name)::text = 'serine_threonine_turn'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six'::text)) OR ((cvterm.name)::text = 'beta_turn_type_eight'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_b'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_one'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'gamma_turn_classic'::text)) OR ((cvterm.name)::text = 'gamma_turn_inverse'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'polypeptide_turn_motif'::text));
- --
- -- Name: polypeptide_variation_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_variation_site AS
- SELECT feature.feature_id AS polypeptide_variation_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'natural_variant_site'::text) OR ((cvterm.name)::text = 'mutated_variant_site'::text)) OR ((cvterm.name)::text = 'alternate_sequence_site'::text)) OR ((cvterm.name)::text = 'polypeptide_variation_site'::text));
- --
- -- Name: polypeptide_zinc_ion_contact_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypeptide_zinc_ion_contact_site AS
- SELECT feature.feature_id AS polypeptide_zinc_ion_contact_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text);
- --
- -- Name: polyploid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polyploid AS
- SELECT feature.feature_id AS polyploid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'autopolyploid'::text) OR ((cvterm.name)::text = 'allopolyploid'::text)) OR ((cvterm.name)::text = 'polyploid'::text));
- --
- -- Name: polypyrimidine_tract; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW polypyrimidine_tract AS
- SELECT feature.feature_id AS polypyrimidine_tract_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'polypyrimidine_tract'::text);
- --
- -- Name: population_specific_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW population_specific_variant AS
- SELECT feature.feature_id AS population_specific_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'population_specific_variant'::text);
- --
- -- Name: positive_sense_ssrna_viral_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW positive_sense_ssrna_viral_sequence AS
- SELECT feature.feature_id AS positive_sense_ssrna_viral_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text);
- --
- -- Name: positively_autoregulated; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW positively_autoregulated AS
- SELECT feature.feature_id AS positively_autoregulated_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'positively_autoregulated'::text);
- --
- -- Name: positively_autoregulated_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW positively_autoregulated_gene AS
- SELECT feature.feature_id AS positively_autoregulated_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'positively_autoregulated_gene'::text);
- --
- -- Name: possible_assembly_error; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW possible_assembly_error AS
- SELECT feature.feature_id AS possible_assembly_error_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'possible_assembly_error'::text);
- --
- -- Name: possible_base_call_error; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW possible_base_call_error AS
- SELECT feature.feature_id AS possible_base_call_error_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'possible_base_call_error'::text);
- --
- -- Name: post_translationally_modified_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW post_translationally_modified_region AS
- SELECT feature.feature_id AS post_translationally_modified_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'histone_modification'::text) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'post_translationally_modified_region'::text));
- --
- -- Name: post_translationally_regulated; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW post_translationally_regulated AS
- SELECT feature.feature_id AS post_translationally_regulated_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'post_translationally_regulated_by_protein_stability'::text) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_modification'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated'::text));
- --
- -- Name: post_translationally_regulated_by_protein_modification; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW post_translationally_regulated_by_protein_modification AS
- SELECT feature.feature_id AS post_translationally_regulated_by_protein_modification_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'post_translationally_regulated_by_protein_modification'::text);
- --
- -- Name: post_translationally_regulated_by_protein_stability; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW post_translationally_regulated_by_protein_stability AS
- SELECT feature.feature_id AS post_translationally_regulated_by_protein_stability_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'post_translationally_regulated_by_protein_stability'::text);
- --
- -- Name: post_translationally_regulated_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW post_translationally_regulated_gene AS
- SELECT feature.feature_id AS post_translationally_regulated_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'post_translationally_regulated_gene'::text);
- --
- -- Name: pre_edited_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pre_edited_mrna AS
- SELECT feature.feature_id AS pre_edited_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pre_edited_mRNA'::text);
- --
- -- Name: pre_edited_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pre_edited_region AS
- SELECT feature.feature_id AS pre_edited_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pre_edited_region'::text);
- --
- -- Name: pre_mirna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pre_mirna AS
- SELECT feature.feature_id AS pre_mirna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pre_miRNA'::text);
- --
- -- Name: predicted; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW predicted AS
- SELECT feature.feature_id AS predicted_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'supported_by_sequence_similarity'::text) OR ((cvterm.name)::text = 'orphan'::text)) OR ((cvterm.name)::text = 'predicted_by_ab_initio_computation'::text)) OR ((cvterm.name)::text = 'supported_by_domain_match'::text)) OR ((cvterm.name)::text = 'supported_by_EST_or_cDNA'::text)) OR ((cvterm.name)::text = 'predicted'::text));
- --
- -- Name: predicted_by_ab_initio_computation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW predicted_by_ab_initio_computation AS
- SELECT feature.feature_id AS predicted_by_ab_initio_computation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'predicted_by_ab_initio_computation'::text);
- --
- -- Name: predicted_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW predicted_gene AS
- SELECT feature.feature_id AS predicted_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'predicted_gene'::text);
- --
- -- Name: primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW primary_transcript AS
- SELECT feature.feature_id AS primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'protein_coding_primary_transcript'::text) OR ((cvterm.name)::text = 'nc_primary_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'monocistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'mini_exon_donor_RNA'::text)) OR ((cvterm.name)::text = 'antisense_primary_transcript'::text)) OR ((cvterm.name)::text = 'capped_primary_transcript'::text)) OR ((cvterm.name)::text = 'pre_edited_mRNA'::text)) OR ((cvterm.name)::text = 'scRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tmRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'SRP_RNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'miRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tasiRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_small_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_large_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'alanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'arginine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'asparagine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'aspartic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'cysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glycine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'histidine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'isoleucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'leucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'lysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methionine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'phenylalanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'proline_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'serine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'threonine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tryptophan_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tyrosine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'valine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'pyrrolysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'selenocysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'U14_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'stRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'primary_transcript'::text));
- --
- -- Name: primary_transcript_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW primary_transcript_region AS
- SELECT feature.feature_id AS primary_transcript_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'splice_site'::text) OR ((cvterm.name)::text = 'intron'::text)) OR ((cvterm.name)::text = 'clip'::text)) OR ((cvterm.name)::text = 'TSS'::text)) OR ((cvterm.name)::text = 'transcription_end_site'::text)) OR ((cvterm.name)::text = 'spliced_leader_RNA'::text)) OR ((cvterm.name)::text = 'rRNA_primary_transcript_region'::text)) OR ((cvterm.name)::text = 'spliceosomal_intron_region'::text)) OR ((cvterm.name)::text = 'intron_domain'::text)) OR ((cvterm.name)::text = 'miRNA_primary_transcript_region'::text)) OR ((cvterm.name)::text = 'outron'::text)) OR ((cvterm.name)::text = 'cis_splice_site'::text)) OR ((cvterm.name)::text = 'trans_splice_site'::text)) OR ((cvterm.name)::text = 'cryptic_splice_site'::text)) OR ((cvterm.name)::text = 'five_prime_cis_splice_site'::text)) OR ((cvterm.name)::text = 'three_prime_cis_splice_site'::text)) OR ((cvterm.name)::text = 'recursive_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'trans_splice_acceptor_site'::text)) OR ((cvterm.name)::text = 'trans_splice_donor_site'::text)) OR ((cvterm.name)::text = 'SL1_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL2_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL3_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL4_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL5_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL6_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL7_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL8_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL9_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL10_accceptor_site'::text)) OR ((cvterm.name)::text = 'SL11_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL12_acceptor_site'::text)) OR ((cvterm.name)::text = 'five_prime_intron'::text)) OR ((cvterm.name)::text = 'interior_intron'::text)) OR ((cvterm.name)::text = 'three_prime_intron'::text)) OR ((cvterm.name)::text = 'twintron'::text)) OR ((cvterm.name)::text = 'UTR_intron'::text)) OR ((cvterm.name)::text = 'autocatalytically_spliced_intron'::text)) OR ((cvterm.name)::text = 'spliceosomal_intron'::text)) OR ((cvterm.name)::text = 'mobile_intron'::text)) OR ((cvterm.name)::text = 'endonuclease_spliced_intron'::text)) OR ((cvterm.name)::text = 'five_prime_UTR_intron'::text)) OR ((cvterm.name)::text = 'three_prime_UTR_intron'::text)) OR ((cvterm.name)::text = 'group_I_intron'::text)) OR ((cvterm.name)::text = 'group_II_intron'::text)) OR ((cvterm.name)::text = 'group_III_intron'::text)) OR ((cvterm.name)::text = 'group_IIA_intron'::text)) OR ((cvterm.name)::text = 'group_IIB_intron'::text)) OR ((cvterm.name)::text = 'U2_intron'::text)) OR ((cvterm.name)::text = 'U12_intron'::text)) OR ((cvterm.name)::text = 'archaeal_intron'::text)) OR ((cvterm.name)::text = 'tRNA_intron'::text)) OR ((cvterm.name)::text = 'five_prime_clip'::text)) OR ((cvterm.name)::text = 'three_prime_clip'::text)) OR ((cvterm.name)::text = 'major_TSS'::text)) OR ((cvterm.name)::text = 'minor_TSS'::text)) OR ((cvterm.name)::text = 'transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'internal_transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'external_transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'intronic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'branch_site'::text)) OR ((cvterm.name)::text = 'polypyrimidine_tract'::text)) OR ((cvterm.name)::text = 'internal_guide_sequence'::text)) OR ((cvterm.name)::text = 'mirtron'::text)) OR ((cvterm.name)::text = 'pre_miRNA'::text)) OR ((cvterm.name)::text = 'miRNA_stem'::text)) OR ((cvterm.name)::text = 'miRNA_loop'::text)) OR ((cvterm.name)::text = 'miRNA_antiguide'::text)) OR ((cvterm.name)::text = 'primary_transcript_region'::text));
- --
- -- Name: primer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW primer AS
- SELECT feature.feature_id AS primer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'sequencing_primer'::text) OR ((cvterm.name)::text = 'forward_primer'::text)) OR ((cvterm.name)::text = 'reverse_primer'::text)) OR ((cvterm.name)::text = 'ASPE_primer'::text)) OR ((cvterm.name)::text = 'dCAPS_primer'::text)) OR ((cvterm.name)::text = 'primer'::text));
- --
- -- Name: primer_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW primer_binding_site AS
- SELECT feature.feature_id AS primer_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'primer_binding_site'::text);
- --
- -- Name: primer_match; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW primer_match AS
- SELECT feature.feature_id AS primer_match_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'primer_match'::text);
- --
- -- Name: probe; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW probe AS
- SELECT feature.feature_id AS probe_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'microarray_oligo'::text) OR ((cvterm.name)::text = 'probe'::text));
- --
- -- Name: processed_pseudogene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW processed_pseudogene AS
- SELECT feature.feature_id AS processed_pseudogene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'processed_pseudogene'::text);
- --
- -- Name: processed_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW processed_transcript AS
- SELECT feature.feature_id AS processed_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'processed_transcript'::text);
- --
- -- Name: proline; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW proline AS
- SELECT feature.feature_id AS proline_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'proline'::text);
- --
- -- Name: proline_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW proline_trna_primary_transcript AS
- SELECT feature.feature_id AS proline_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'proline_tRNA_primary_transcript'::text);
- --
- -- Name: prolyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW prolyl_trna AS
- SELECT feature.feature_id AS prolyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'prolyl_tRNA'::text);
- --
- -- Name: promoter; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW promoter AS
- SELECT feature.feature_id AS promoter_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((cvterm.name)::text = 'bidirectional_promoter'::text) OR ((cvterm.name)::text = 'RNA_polymerase_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_I_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'Phage_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_core_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'promoter'::text));
- --
- -- Name: promoter_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW promoter_element AS
- SELECT feature.feature_id AS promoter_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((cvterm.name)::text = 'GC_rich_promoter_region'::text) OR ((cvterm.name)::text = 'DMv4_motif'::text)) OR ((cvterm.name)::text = 'DMv5_motif'::text)) OR ((cvterm.name)::text = 'DMv3_motif'::text)) OR ((cvterm.name)::text = 'DMv2_motif'::text)) OR ((cvterm.name)::text = 'DPE1_motif'::text)) OR ((cvterm.name)::text = 'DMv1_motif'::text)) OR ((cvterm.name)::text = 'NDM2_motif'::text)) OR ((cvterm.name)::text = 'NDM3_motif'::text)) OR ((cvterm.name)::text = 'core_promoter_element'::text)) OR ((cvterm.name)::text = 'regulatory_promoter_element'::text)) OR ((cvterm.name)::text = 'INR_motif'::text)) OR ((cvterm.name)::text = 'DPE_motif'::text)) OR ((cvterm.name)::text = 'BREu_motif'::text)) OR ((cvterm.name)::text = 'TATA_box'::text)) OR ((cvterm.name)::text = 'A_box'::text)) OR ((cvterm.name)::text = 'B_box'::text)) OR ((cvterm.name)::text = 'C_box'::text)) OR ((cvterm.name)::text = 'MTE'::text)) OR ((cvterm.name)::text = 'BREd_motif'::text)) OR ((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'proximal_promoter_element'::text)) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'promoter_element'::text));
- --
- -- Name: promoter_targeting_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW promoter_targeting_sequence AS
- SELECT feature.feature_id AS promoter_targeting_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'promoter_targeting_sequence'::text);
- --
- -- Name: promoter_trap_construct; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW promoter_trap_construct AS
- SELECT feature.feature_id AS promoter_trap_construct_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'promoter_trap_construct'::text);
- --
- -- Name: propeptide; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW propeptide AS
- SELECT feature.feature_id AS propeptide_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'propeptide'::text);
- --
- -- Name: propeptide_cleavage_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW propeptide_cleavage_site AS
- SELECT feature.feature_id AS propeptide_cleavage_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'propeptide_cleavage_site'::text);
- --
- -- Name: prophage; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW prophage AS
- SELECT feature.feature_id AS prophage_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'prophage'::text);
- --
- -- Name: proplastid_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW proplastid_gene AS
- SELECT feature.feature_id AS proplastid_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'proplastid_gene'::text);
- --
- -- Name: proplastid_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW proplastid_sequence AS
- SELECT feature.feature_id AS proplastid_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'proplastid_sequence'::text);
- --
- -- Name: protein_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW protein_binding_site AS
- SELECT feature.feature_id AS protein_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((cvterm.name)::text = 'protein_protein_contact'::text) OR ((cvterm.name)::text = 'nucleotide_to_protein_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_binding_site'::text)) OR ((cvterm.name)::text = 'TF_binding_site'::text)) OR ((cvterm.name)::text = 'histone_binding_site'::text)) OR ((cvterm.name)::text = 'insulator_binding_site'::text)) OR ((cvterm.name)::text = 'enhancer_binding_site'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_sensitive_site'::text)) OR ((cvterm.name)::text = 'homing_endonuclease_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'group_1_intron_homing_endonuclease_target_region'::text)) OR ((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'protein_binding_site'::text));
- --
- -- Name: protein_coding; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW protein_coding AS
- SELECT feature.feature_id AS protein_coding_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'intein_containing'::text) OR ((cvterm.name)::text = 'protein_coding'::text));
- --
- -- Name: protein_coding_gene; Type: VIEW; Schema: public; Owner: -
- --
- --
- -- Name: protein_coding_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW protein_coding_gene AS
- SELECT feature.feature_id AS protein_coding_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((cvterm.name)::text = 'gene_with_polyadenylated_mRNA'::text) OR ((cvterm.name)::text = 'gene_with_mRNA_with_frameshift'::text)) OR ((cvterm.name)::text = 'gene_with_edited_transcript'::text)) OR ((cvterm.name)::text = 'gene_with_recoded_mRNA'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_read_through'::text)) OR ((cvterm.name)::text = 'gene_with_mRNA_recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'gene_with_transcript_with_translational_frameshift'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'protein_coding_gene'::text));
- --
- -- Name: protein_coding_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW protein_coding_primary_transcript AS
- SELECT feature.feature_id AS protein_coding_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'pre_edited_mRNA'::text) OR ((cvterm.name)::text = 'protein_coding_primary_transcript'::text));
- --
- -- Name: protein_match; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW protein_match AS
- SELECT feature.feature_id AS protein_match_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'protein_match'::text);
- --
- -- Name: protein_protein_contact; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW protein_protein_contact AS
- SELECT feature.feature_id AS protein_protein_contact_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'protein_protein_contact'::text);
- --
- -- Name: proviral_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW proviral_gene AS
- SELECT feature.feature_id AS proviral_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'endogenous_retroviral_gene'::text) OR ((cvterm.name)::text = 'proviral_gene'::text));
- --
- -- Name: proviral_location; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW proviral_location AS
- SELECT feature.feature_id AS proviral_location_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'endogenous_retroviral_sequence'::text) OR ((cvterm.name)::text = 'proviral_location'::text));
- --
- -- Name: proviral_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW proviral_region AS
- SELECT feature.feature_id AS proviral_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'prophage'::text) OR ((cvterm.name)::text = 'proviral_region'::text));
- --
- -- Name: proximal_promoter_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW proximal_promoter_element AS
- SELECT feature.feature_id AS proximal_promoter_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'proximal_promoter_element'::text);
- --
- -- Name: pse_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pse_motif AS
- SELECT feature.feature_id AS pse_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'PSE_motif'::text);
- --
- -- Name: pseudogene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pseudogene AS
- SELECT feature.feature_id AS pseudogene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'processed_pseudogene'::text) OR ((cvterm.name)::text = 'non_processed_pseudogene'::text)) OR ((cvterm.name)::text = 'pseudogene_by_unequal_crossing_over'::text)) OR ((cvterm.name)::text = 'nuclear_mt_pseudogene'::text)) OR ((cvterm.name)::text = 'cassette_pseudogene'::text)) OR ((cvterm.name)::text = 'duplicated_pseudogene'::text)) OR ((cvterm.name)::text = 'unitary_pseudogene'::text)) OR ((cvterm.name)::text = 'pseudogene'::text));
- --
- -- Name: pseudogene_by_unequal_crossing_over; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pseudogene_by_unequal_crossing_over AS
- SELECT feature.feature_id AS pseudogene_by_unequal_crossing_over_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pseudogene_by_unequal_crossing_over'::text);
- --
- -- Name: pseudogenic_exon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pseudogenic_exon AS
- SELECT feature.feature_id AS pseudogenic_exon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pseudogenic_exon'::text);
- --
- -- Name: pseudogenic_gene_segment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pseudogenic_gene_segment AS
- SELECT feature.feature_id AS pseudogenic_gene_segment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pseudogenic_gene_segment'::text);
- --
- -- Name: pseudogenic_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pseudogenic_region AS
- SELECT feature.feature_id AS pseudogenic_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'decayed_exon'::text) OR ((cvterm.name)::text = 'pseudogenic_exon'::text)) OR ((cvterm.name)::text = 'pseudogenic_transcript'::text)) OR ((cvterm.name)::text = 'pseudogenic_rRNA'::text)) OR ((cvterm.name)::text = 'pseudogenic_tRNA'::text)) OR ((cvterm.name)::text = 'pseudogenic_region'::text));
- --
- -- Name: pseudogenic_rrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pseudogenic_rrna AS
- SELECT feature.feature_id AS pseudogenic_rrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pseudogenic_rRNA'::text);
- --
- -- Name: pseudogenic_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pseudogenic_transcript AS
- SELECT feature.feature_id AS pseudogenic_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pseudogenic_transcript'::text);
- --
- -- Name: pseudogenic_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pseudogenic_trna AS
- SELECT feature.feature_id AS pseudogenic_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pseudogenic_tRNA'::text);
- --
- -- Name: pseudoknot; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pseudoknot AS
- SELECT feature.feature_id AS pseudoknot_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'recoding_pseudoknot'::text) OR ((cvterm.name)::text = 'H_pseudoknot'::text)) OR ((cvterm.name)::text = 'pseudoknot'::text));
- --
- -- Name: pseudouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pseudouridine AS
- SELECT feature.feature_id AS pseudouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pseudouridine'::text);
- --
- -- Name: pseudouridylation_guide_snorna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pseudouridylation_guide_snorna AS
- SELECT feature.feature_id AS pseudouridylation_guide_snorna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pseudouridylation_guide_snoRNA'::text);
- --
- -- Name: purine_to_pyrimidine_transversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW purine_to_pyrimidine_transversion AS
- SELECT feature.feature_id AS purine_to_pyrimidine_transversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'A_to_C_transversion'::text) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text));
- --
- -- Name: purine_transition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW purine_transition AS
- SELECT feature.feature_id AS purine_transition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'A_to_G_transition'::text) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text));
- --
- -- Name: pyrimidine_to_purine_transversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pyrimidine_to_purine_transversion AS
- SELECT feature.feature_id AS pyrimidine_to_purine_transversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'C_to_A_transversion'::text) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text));
- --
- -- Name: pyrimidine_transition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pyrimidine_transition AS
- SELECT feature.feature_id AS pyrimidine_transition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'C_to_T_transition'::text) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text));
- --
- -- Name: pyrosequenced_read; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pyrosequenced_read AS
- SELECT feature.feature_id AS pyrosequenced_read_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pyrosequenced_read'::text);
- --
- -- Name: pyrrolysine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pyrrolysine AS
- SELECT feature.feature_id AS pyrrolysine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pyrrolysine'::text);
- --
- -- Name: pyrrolysine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pyrrolysine_trna_primary_transcript AS
- SELECT feature.feature_id AS pyrrolysine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pyrrolysine_tRNA_primary_transcript'::text);
- --
- -- Name: pyrrolysyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW pyrrolysyl_trna AS
- SELECT feature.feature_id AS pyrrolysyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'pyrrolysyl_tRNA'::text);
- --
- -- Name: qtl; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW qtl AS
- SELECT feature.feature_id AS qtl_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'QTL'::text);
- --
- -- Name: quality_value; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW quality_value AS
- SELECT feature.feature_id AS quality_value_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'quality_value'::text);
- --
- -- Name: quantitative_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW quantitative_variant AS
- SELECT feature.feature_id AS quantitative_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'quantitative_variant'::text);
- --
- -- Name: queuosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW queuosine AS
- SELECT feature.feature_id AS queuosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'queuosine'::text);
- --
- -- Name: r_five_prime_ltr_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW r_five_prime_ltr_region AS
- SELECT feature.feature_id AS r_five_prime_ltr_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'R_five_prime_LTR_region'::text);
- --
- -- Name: r_gna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW r_gna AS
- SELECT feature.feature_id AS r_gna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'R_GNA'::text);
- --
- -- Name: r_gna_oligo; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW r_gna_oligo AS
- SELECT feature.feature_id AS r_gna_oligo_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'R_GNA_oligo'::text);
- --
- -- Name: r_ltr_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW r_ltr_region AS
- SELECT feature.feature_id AS r_ltr_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'R_five_prime_LTR_region'::text) OR ((cvterm.name)::text = 'R_LTR_region'::text));
- --
- -- Name: r_three_prime_ltr_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW r_three_prime_ltr_region AS
- SELECT feature.feature_id AS r_three_prime_ltr_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'R_three_prime_LTR_region'::text);
- --
- -- Name: random_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW random_sequence AS
- SELECT feature.feature_id AS random_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'random_sequence'::text);
- --
- -- Name: rapd; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rapd AS
- SELECT feature.feature_id AS rapd_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RAPD'::text);
- --
- -- Name: rare_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rare_variant AS
- SELECT feature.feature_id AS rare_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rare_variant'::text);
- --
- -- Name: rasirna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rasirna AS
- SELECT feature.feature_id AS rasirna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rasiRNA'::text);
- --
- -- Name: rate_of_transcription_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rate_of_transcription_variant AS
- SELECT feature.feature_id AS rate_of_transcription_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'increased_transcription_rate_variant'::text) OR ((cvterm.name)::text = 'decreased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'rate_of_transcription_variant'::text));
- --
- -- Name: read; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW read AS
- SELECT feature.feature_id AS read_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((cvterm.name)::text = 'read_pair'::text) OR ((cvterm.name)::text = 'contig_read'::text)) OR ((cvterm.name)::text = 'BAC_end'::text)) OR ((cvterm.name)::text = 'dye_terminator_read'::text)) OR ((cvterm.name)::text = 'pyrosequenced_read'::text)) OR ((cvterm.name)::text = 'ligation_based_read'::text)) OR ((cvterm.name)::text = 'polymerase_synthesis_read'::text)) OR ((cvterm.name)::text = 'PAC_end'::text)) OR ((cvterm.name)::text = 'YAC_end'::text)) OR ((cvterm.name)::text = 'clone_end'::text)) OR ((cvterm.name)::text = 'read'::text));
- --
- -- Name: read_pair; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW read_pair AS
- SELECT feature.feature_id AS read_pair_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'read_pair'::text);
- --
- -- Name: reading_frame; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW reading_frame AS
- SELECT feature.feature_id AS reading_frame_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'ORF'::text) OR ((cvterm.name)::text = 'blocked_reading_frame'::text)) OR ((cvterm.name)::text = 'mini_gene'::text)) OR ((cvterm.name)::text = 'rescue_mini_gene'::text)) OR ((cvterm.name)::text = 'reading_frame'::text));
- --
- -- Name: reagent; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW reagent AS
- SELECT feature.feature_id AS reagent_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'PCR_product'::text) OR ((cvterm.name)::text = 'clone'::text)) OR ((cvterm.name)::text = 'rescue_region'::text)) OR ((cvterm.name)::text = 'oligo'::text)) OR ((cvterm.name)::text = 'clone_insert'::text)) OR ((cvterm.name)::text = 'cloned_region'::text)) OR ((cvterm.name)::text = 'databank_entry'::text)) OR ((cvterm.name)::text = 'RAPD'::text)) OR ((cvterm.name)::text = 'genomic_clone'::text)) OR ((cvterm.name)::text = 'cDNA_clone'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'validated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'invalidated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'three_prime_RACE_clone'::text)) OR ((cvterm.name)::text = 'chimeric_cDNA_clone'::text)) OR ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'aptamer'::text)) OR ((cvterm.name)::text = 'probe'::text)) OR ((cvterm.name)::text = 'tag'::text)) OR ((cvterm.name)::text = 'ss_oligo'::text)) OR ((cvterm.name)::text = 'ds_oligo'::text)) OR ((cvterm.name)::text = 'DNAzyme'::text)) OR ((cvterm.name)::text = 'synthetic_oligo'::text)) OR ((cvterm.name)::text = 'DNA_aptamer'::text)) OR ((cvterm.name)::text = 'RNA_aptamer'::text)) OR ((cvterm.name)::text = 'microarray_oligo'::text)) OR ((cvterm.name)::text = 'SAGE_tag'::text)) OR ((cvterm.name)::text = 'STS'::text)) OR ((cvterm.name)::text = 'EST'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'five_prime_EST'::text)) OR ((cvterm.name)::text = 'three_prime_EST'::text)) OR ((cvterm.name)::text = 'UST'::text)) OR ((cvterm.name)::text = 'RST'::text)) OR ((cvterm.name)::text = 'three_prime_UST'::text)) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'three_prime_RST'::text)) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'primer'::text)) OR ((cvterm.name)::text = 'sequencing_primer'::text)) OR ((cvterm.name)::text = 'forward_primer'::text)) OR ((cvterm.name)::text = 'reverse_primer'::text)) OR ((cvterm.name)::text = 'ASPE_primer'::text)) OR ((cvterm.name)::text = 'dCAPS_primer'::text)) OR ((cvterm.name)::text = 'RNAi_reagent'::text)) OR ((cvterm.name)::text = 'DNA_constraint_sequence'::text)) OR ((cvterm.name)::text = 'morpholino_oligo'::text)) OR ((cvterm.name)::text = 'PNA_oligo'::text)) OR ((cvterm.name)::text = 'LNA_oligo'::text)) OR ((cvterm.name)::text = 'TNA_oligo'::text)) OR ((cvterm.name)::text = 'GNA_oligo'::text)) OR ((cvterm.name)::text = 'R_GNA_oligo'::text)) OR ((cvterm.name)::text = 'S_GNA_oligo'::text)) OR ((cvterm.name)::text = 'cloned_cDNA_insert'::text)) OR ((cvterm.name)::text = 'cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'BAC_cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'reagent'::text));
- --
- -- Name: rearranged_at_dna_level; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rearranged_at_dna_level AS
- SELECT feature.feature_id AS rearranged_at_dna_level_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rearranged_at_DNA_level'::text);
- --
- -- Name: reciprocal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW reciprocal AS
- SELECT feature.feature_id AS reciprocal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'reciprocal'::text);
- --
- -- Name: reciprocal_chromosomal_translocation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW reciprocal_chromosomal_translocation AS
- SELECT feature.feature_id AS reciprocal_chromosomal_translocation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'reciprocal_chromosomal_translocation'::text);
- --
- -- Name: recoded; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recoded AS
- SELECT feature.feature_id AS recoded_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'codon_redefined'::text) OR ((cvterm.name)::text = 'recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'minus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'plus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'recoded'::text));
- --
- -- Name: recoded_by_translational_bypass; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recoded_by_translational_bypass AS
- SELECT feature.feature_id AS recoded_by_translational_bypass_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'recoded_by_translational_bypass'::text);
- --
- -- Name: recoded_codon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recoded_codon AS
- SELECT feature.feature_id AS recoded_codon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'stop_codon_read_through'::text) OR ((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'recoded_codon'::text));
- --
- -- Name: recoded_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recoded_mrna AS
- SELECT feature.feature_id AS recoded_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'mRNA_recoded_by_translational_bypass'::text) OR ((cvterm.name)::text = 'mRNA_recoded_by_codon_redefinition'::text)) OR ((cvterm.name)::text = 'recoded_mRNA'::text));
- --
- -- Name: recoding_pseudoknot; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recoding_pseudoknot AS
- SELECT feature.feature_id AS recoding_pseudoknot_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'recoding_pseudoknot'::text);
- --
- -- Name: recoding_stimulatory_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recoding_stimulatory_region AS
- SELECT feature.feature_id AS recoding_stimulatory_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text) OR ((cvterm.name)::text = 'SECIS_element'::text)) OR ((cvterm.name)::text = 'three_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'five_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'stop_codon_signal'::text)) OR ((cvterm.name)::text = 'three_prime_stem_loop_structure'::text)) OR ((cvterm.name)::text = 'flanking_three_prime_quadruplet_recoding_signal'::text)) OR ((cvterm.name)::text = 'three_prime_repeat_recoding_signal'::text)) OR ((cvterm.name)::text = 'distant_three_prime_recoding_signal'::text)) OR ((cvterm.name)::text = 'UAG_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UAA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UGA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'recoding_stimulatory_region'::text));
- --
- -- Name: recombination_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recombination_feature AS
- SELECT feature.feature_id AS recombination_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'recombination_hotspot'::text) OR ((cvterm.name)::text = 'haplotype_block'::text)) OR ((cvterm.name)::text = 'sequence_rearrangement_feature'::text)) OR ((cvterm.name)::text = 'iDNA'::text)) OR ((cvterm.name)::text = 'specific_recombination_site'::text)) OR ((cvterm.name)::text = 'chromosome_breakage_sequence'::text)) OR ((cvterm.name)::text = 'internal_eliminated_sequence'::text)) OR ((cvterm.name)::text = 'macronucleus_destined_segment'::text)) OR ((cvterm.name)::text = 'recombination_feature_of_rearranged_gene'::text)) OR ((cvterm.name)::text = 'site_specific_recombination_target_region'::text)) OR ((cvterm.name)::text = 'recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text)) OR ((cvterm.name)::text = 'D_gene'::text)) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'three_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'VD_gene'::text)) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'integration_excision_site'::text)) OR ((cvterm.name)::text = 'resolution_site'::text)) OR ((cvterm.name)::text = 'inversion_site'::text)) OR ((cvterm.name)::text = 'inversion_site_part'::text)) OR ((cvterm.name)::text = 'attI_site'::text)) OR ((cvterm.name)::text = 'attP_site'::text)) OR ((cvterm.name)::text = 'attB_site'::text)) OR ((cvterm.name)::text = 'attL_site'::text)) OR ((cvterm.name)::text = 'attR_site'::text)) OR ((cvterm.name)::text = 'attC_site'::text)) OR ((cvterm.name)::text = 'attCtn_site'::text)) OR ((cvterm.name)::text = 'loxP_site'::text)) OR ((cvterm.name)::text = 'dif_site'::text)) OR ((cvterm.name)::text = 'FRT_site'::text)) OR ((cvterm.name)::text = 'IRLinv_site'::text)) OR ((cvterm.name)::text = 'IRRinv_site'::text)) OR ((cvterm.name)::text = 'recombination_feature'::text));
- --
- -- Name: recombination_feature_of_rearranged_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recombination_feature_of_rearranged_gene AS
- SELECT feature.feature_id AS recombination_feature_of_rearranged_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_feature'::text) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text)) OR ((cvterm.name)::text = 'D_gene'::text)) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'three_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'VD_gene'::text)) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'recombination_feature_of_rearranged_gene'::text));
- --
- -- Name: recombination_hotspot; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recombination_hotspot AS
- SELECT feature.feature_id AS recombination_hotspot_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'recombination_hotspot'::text);
- --
- -- Name: recombination_regulatory_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recombination_regulatory_region AS
- SELECT feature.feature_id AS recombination_regulatory_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'recombination_regulatory_region'::text);
- --
- -- Name: recombination_signal_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recombination_signal_sequence AS
- SELECT feature.feature_id AS recombination_signal_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'recombination_signal_sequence'::text);
- --
- -- Name: recombinationally_inverted_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recombinationally_inverted_gene AS
- SELECT feature.feature_id AS recombinationally_inverted_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'recombinationally_inverted_gene'::text);
- --
- -- Name: recombinationally_rearranged; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recombinationally_rearranged AS
- SELECT feature.feature_id AS recombinationally_rearranged_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'recombinationally_rearranged'::text);
- --
- -- Name: recombinationally_rearranged_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recombinationally_rearranged_gene AS
- SELECT feature.feature_id AS recombinationally_rearranged_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'recombinationally_inverted_gene'::text) OR ((cvterm.name)::text = 'recombinationally_rearranged_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'recombinationally_rearranged_gene'::text));
- --
- -- Name: recombinationally_rearranged_vertebrate_immune_system_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recombinationally_rearranged_vertebrate_immune_system_gene AS
- SELECT feature.feature_id AS recombinationally_rearranged_vertebrate_immune_system_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'recombinationally_rearranged_vertebrate_immune_system_gene'::text);
- --
- -- Name: recursive_splice_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW recursive_splice_site AS
- SELECT feature.feature_id AS recursive_splice_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'recursive_splice_site'::text);
- --
- -- Name: reference_genome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW reference_genome AS
- SELECT feature.feature_id AS reference_genome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'reference_genome'::text);
- --
- -- Name: region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW region AS
- SELECT feature.feature_id AS region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'biomaterial_region'::text) OR ((cvterm.name)::text = 'experimental_feature'::text)) OR ((cvterm.name)::text = 'biological_region'::text)) OR ((cvterm.name)::text = 'topologically_defined_region'::text)) OR ((cvterm.name)::text = 'reagent'::text)) OR ((cvterm.name)::text = 'engineered_region'::text)) OR ((cvterm.name)::text = 'PCR_product'::text)) OR ((cvterm.name)::text = 'clone'::text)) OR ((cvterm.name)::text = 'rescue_region'::text)) OR ((cvterm.name)::text = 'oligo'::text)) OR ((cvterm.name)::text = 'clone_insert'::text)) OR ((cvterm.name)::text = 'cloned_region'::text)) OR ((cvterm.name)::text = 'databank_entry'::text)) OR ((cvterm.name)::text = 'RAPD'::text)) OR ((cvterm.name)::text = 'genomic_clone'::text)) OR ((cvterm.name)::text = 'cDNA_clone'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'validated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'invalidated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'three_prime_RACE_clone'::text)) OR ((cvterm.name)::text = 'chimeric_cDNA_clone'::text)) OR ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'aptamer'::text)) OR ((cvterm.name)::text = 'probe'::text)) OR ((cvterm.name)::text = 'tag'::text)) OR ((cvterm.name)::text = 'ss_oligo'::text)) OR ((cvterm.name)::text = 'ds_oligo'::text)) OR ((cvterm.name)::text = 'DNAzyme'::text)) OR ((cvterm.name)::text = 'synthetic_oligo'::text)) OR ((cvterm.name)::text = 'DNA_aptamer'::text)) OR ((cvterm.name)::text = 'RNA_aptamer'::text)) OR ((cvterm.name)::text = 'microarray_oligo'::text)) OR ((cvterm.name)::text = 'SAGE_tag'::text)) OR ((cvterm.name)::text = 'STS'::text)) OR ((cvterm.name)::text = 'EST'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'five_prime_EST'::text)) OR ((cvterm.name)::text = 'three_prime_EST'::text)) OR ((cvterm.name)::text = 'UST'::text)) OR ((cvterm.name)::text = 'RST'::text)) OR ((cvterm.name)::text = 'three_prime_UST'::text)) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'three_prime_RST'::text)) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'primer'::text)) OR ((cvterm.name)::text = 'sequencing_primer'::text)) OR ((cvterm.name)::text = 'forward_primer'::text)) OR ((cvterm.name)::text = 'reverse_primer'::text)) OR ((cvterm.name)::text = 'ASPE_primer'::text)) OR ((cvterm.name)::text = 'dCAPS_primer'::text)) OR ((cvterm.name)::text = 'RNAi_reagent'::text)) OR ((cvterm.name)::text = 'DNA_constraint_sequence'::text)) OR ((cvterm.name)::text = 'morpholino_oligo'::text)) OR ((cvterm.name)::text = 'PNA_oligo'::text)) OR ((cvterm.name)::text = 'LNA_oligo'::text)) OR ((cvterm.name)::text = 'TNA_oligo'::text)) OR ((cvterm.name)::text = 'GNA_oligo'::text)) OR ((cvterm.name)::text = 'R_GNA_oligo'::text)) OR ((cvterm.name)::text = 'S_GNA_oligo'::text)) OR ((cvterm.name)::text = 'cloned_cDNA_insert'::text)) OR ((cvterm.name)::text = 'cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'BAC_cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_gene'::text)) OR ((cvterm.name)::text = 'engineered_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_region'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_fusion_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'match_part'::text)) OR ((cvterm.name)::text = 'assembly_component'::text)) OR ((cvterm.name)::text = 'conserved_region'::text)) OR ((cvterm.name)::text = 'match'::text)) OR ((cvterm.name)::text = 'remark'::text)) OR ((cvterm.name)::text = 'reading_frame'::text)) OR ((cvterm.name)::text = 'consensus_region'::text)) OR ((cvterm.name)::text = 'low_complexity_region'::text)) OR ((cvterm.name)::text = 'assembly'::text)) OR ((cvterm.name)::text = 'transcribed_fragment'::text)) OR ((cvterm.name)::text = 'transcribed_cluster'::text)) OR ((cvterm.name)::text = 'high_identity_region'::text)) OR ((cvterm.name)::text = 'mathematically_defined_repeat'::text)) OR ((cvterm.name)::text = 'experimentally_defined_binding_region'::text)) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'read'::text)) OR ((cvterm.name)::text = 'restriction_fragment'::text)) OR ((cvterm.name)::text = 'golden_path_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_fragment'::text)) OR ((cvterm.name)::text = 'gap'::text)) OR ((cvterm.name)::text = 'sonicate_fragment'::text)) OR ((cvterm.name)::text = 'paired_end_fragment'::text)) OR ((cvterm.name)::text = 'read_pair'::text)) OR ((cvterm.name)::text = 'contig_read'::text)) OR ((cvterm.name)::text = 'BAC_end'::text)) OR ((cvterm.name)::text = 'dye_terminator_read'::text)) OR ((cvterm.name)::text = 'pyrosequenced_read'::text)) OR ((cvterm.name)::text = 'ligation_based_read'::text)) OR ((cvterm.name)::text = 'polymerase_synthesis_read'::text)) OR ((cvterm.name)::text = 'PAC_end'::text)) OR ((cvterm.name)::text = 'YAC_end'::text)) OR ((cvterm.name)::text = 'clone_end'::text)) OR ((cvterm.name)::text = 'RFLP_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'coding_conserved_region'::text)) OR ((cvterm.name)::text = 'nc_conserved_region'::text)) OR ((cvterm.name)::text = 'RR_tract'::text)) OR ((cvterm.name)::text = 'homologous_region'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_I'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_II'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_III'::text)) OR ((cvterm.name)::text = 'X_element'::text)) OR ((cvterm.name)::text = 'U_box'::text)) OR ((cvterm.name)::text = 'regional_centromere_central_core'::text)) OR ((cvterm.name)::text = 'syntenic_region'::text)) OR ((cvterm.name)::text = 'paralogous_region'::text)) OR ((cvterm.name)::text = 'orthologous_region'::text)) OR ((cvterm.name)::text = 'nucleotide_match'::text)) OR ((cvterm.name)::text = 'protein_match'::text)) OR ((cvterm.name)::text = 'expressed_sequence_match'::text)) OR ((cvterm.name)::text = 'cross_genome_match'::text)) OR ((cvterm.name)::text = 'translated_nucleotide_match'::text)) OR ((cvterm.name)::text = 'primer_match'::text)) OR ((cvterm.name)::text = 'EST_match'::text)) OR ((cvterm.name)::text = 'cDNA_match'::text)) OR ((cvterm.name)::text = 'UST_match'::text)) OR ((cvterm.name)::text = 'RST_match'::text)) OR ((cvterm.name)::text = 'sequence_difference'::text)) OR ((cvterm.name)::text = 'experimental_result_region'::text)) OR ((cvterm.name)::text = 'polypeptide_sequencing_information'::text)) OR ((cvterm.name)::text = 'possible_base_call_error'::text)) OR ((cvterm.name)::text = 'possible_assembly_error'::text)) OR ((cvterm.name)::text = 'assembly_error_correction'::text)) OR ((cvterm.name)::text = 'base_call_error_correction'::text)) OR ((cvterm.name)::text = 'overlapping_feature_set'::text)) OR ((cvterm.name)::text = 'no_output'::text)) OR ((cvterm.name)::text = 'overlapping_EST_set'::text)) OR ((cvterm.name)::text = 'non_adjacent_residues'::text)) OR ((cvterm.name)::text = 'non_terminal_residue'::text)) OR ((cvterm.name)::text = 'sequence_conflict'::text)) OR ((cvterm.name)::text = 'sequence_uncertainty'::text)) OR ((cvterm.name)::text = 'contig_collection'::text)) OR ((cvterm.name)::text = 'ORF'::text)) OR ((cvterm.name)::text = 'blocked_reading_frame'::text)) OR ((cvterm.name)::text = 'mini_gene'::text)) OR ((cvterm.name)::text = 'rescue_mini_gene'::text)) OR ((cvterm.name)::text = 'consensus_mRNA'::text)) OR ((cvterm.name)::text = 'sequence_assembly'::text)) OR ((cvterm.name)::text = 'fragment_assembly'::text)) OR ((cvterm.name)::text = 'supercontig'::text)) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'tiling_path'::text)) OR ((cvterm.name)::text = 'virtual_sequence'::text)) OR ((cvterm.name)::text = 'golden_path'::text)) OR ((cvterm.name)::text = 'ultracontig'::text)) OR ((cvterm.name)::text = 'expressed_sequence_assembly'::text)) OR ((cvterm.name)::text = 'fingerprint_map'::text)) OR ((cvterm.name)::text = 'STS_map'::text)) OR ((cvterm.name)::text = 'RH_map'::text)) OR ((cvterm.name)::text = 'unigene_cluster'::text)) OR ((cvterm.name)::text = 'CHiP_seq_region'::text)) OR ((cvterm.name)::text = 'sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'linkage_group'::text)) OR ((cvterm.name)::text = 'polypeptide'::text)) OR ((cvterm.name)::text = 'deletion'::text)) OR ((cvterm.name)::text = 'origin_of_replication'::text)) OR ((cvterm.name)::text = 'recombination_feature'::text)) OR ((cvterm.name)::text = 'CpG_island'::text)) OR ((cvterm.name)::text = 'pseudogene'::text)) OR ((cvterm.name)::text = 'binding_site'::text)) OR ((cvterm.name)::text = 'pseudogenic_region'::text)) OR ((cvterm.name)::text = 'cap'::text)) OR ((cvterm.name)::text = 'intergenic_region'::text)) OR ((cvterm.name)::text = 'oligo_U_tail'::text)) OR ((cvterm.name)::text = 'polyA_sequence'::text)) OR ((cvterm.name)::text = 'repeat_region'::text)) OR ((cvterm.name)::text = 'insertion'::text)) OR ((cvterm.name)::text = 'gene'::text)) OR ((cvterm.name)::text = 'repeat_unit'::text)) OR ((cvterm.name)::text = 'QTL'::text)) OR ((cvterm.name)::text = 'chromosome_part'::text)) OR ((cvterm.name)::text = 'gene_member_region'::text)) OR ((cvterm.name)::text = 'transcript_region'::text)) OR ((cvterm.name)::text = 'polypeptide_region'::text)) OR ((cvterm.name)::text = 'gene_component_region'::text)) OR ((cvterm.name)::text = 'mobile_genetic_element'::text)) OR ((cvterm.name)::text = 'replicon'::text)) OR ((cvterm.name)::text = 'base'::text)) OR ((cvterm.name)::text = 'amino_acid'::text)) OR ((cvterm.name)::text = 'genetic_marker'::text)) OR ((cvterm.name)::text = 'sequence_motif'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_recognition_site'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_single_strand_overhang'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_region'::text)) OR ((cvterm.name)::text = 'open_chromatin_region'::text)) OR ((cvterm.name)::text = 'gene_group'::text)) OR ((cvterm.name)::text = 'substitution'::text)) OR ((cvterm.name)::text = 'inversion'::text)) OR ((cvterm.name)::text = 'retron'::text)) OR ((cvterm.name)::text = 'G_quartet'::text)) OR ((cvterm.name)::text = 'base_pair'::text)) OR ((cvterm.name)::text = 'RNA_sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'DNA_sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'pseudoknot'::text)) OR ((cvterm.name)::text = 'WC_base_pair'::text)) OR ((cvterm.name)::text = 'sugar_edge_base_pair'::text)) OR ((cvterm.name)::text = 'Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'reverse_Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'wobble_base_pair'::text)) OR ((cvterm.name)::text = 'stem_loop'::text)) OR ((cvterm.name)::text = 'tetraloop'::text)) OR ((cvterm.name)::text = 'i_motif'::text)) OR ((cvterm.name)::text = 'recoding_pseudoknot'::text)) OR ((cvterm.name)::text = 'H_pseudoknot'::text)) OR ((cvterm.name)::text = 'D_loop'::text)) OR ((cvterm.name)::text = 'ARS'::text)) OR ((cvterm.name)::text = 'oriT'::text)) OR ((cvterm.name)::text = 'amplification_origin'::text)) OR ((cvterm.name)::text = 'oriV'::text)) OR ((cvterm.name)::text = 'oriC'::text)) OR ((cvterm.name)::text = 'recombination_hotspot'::text)) OR ((cvterm.name)::text = 'haplotype_block'::text)) OR ((cvterm.name)::text = 'sequence_rearrangement_feature'::text)) OR ((cvterm.name)::text = 'iDNA'::text)) OR ((cvterm.name)::text = 'specific_recombination_site'::text)) OR ((cvterm.name)::text = 'chromosome_breakage_sequence'::text)) OR ((cvterm.name)::text = 'internal_eliminated_sequence'::text)) OR ((cvterm.name)::text = 'macronucleus_destined_segment'::text)) OR ((cvterm.name)::text = 'recombination_feature_of_rearranged_gene'::text)) OR ((cvterm.name)::text = 'site_specific_recombination_target_region'::text)) OR ((cvterm.name)::text = 'recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text)) OR ((cvterm.name)::text = 'D_gene'::text)) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'three_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'VD_gene'::text)) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'integration_excision_site'::text)) OR ((cvterm.name)::text = 'resolution_site'::text)) OR ((cvterm.name)::text = 'inversion_site'::text)) OR ((cvterm.name)::text = 'inversion_site_part'::text)) OR ((cvterm.name)::text = 'attI_site'::text)) OR ((cvterm.name)::text = 'attP_site'::text)) OR ((cvterm.name)::text = 'attB_site'::text)) OR ((cvterm.name)::text = 'attL_site'::text)) OR ((cvterm.name)::text = 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((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'gamma_turn_classic'::text)) OR ((cvterm.name)::text = 'gamma_turn_inverse'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'coiled_coil'::text)) OR ((cvterm.name)::text = 'helix_turn_helix'::text)) OR ((cvterm.name)::text = 'natural_variant_site'::text)) OR ((cvterm.name)::text = 'mutated_variant_site'::text)) OR ((cvterm.name)::text = 'alternate_sequence_site'::text)) OR ((cvterm.name)::text = 'signal_peptide'::text)) OR ((cvterm.name)::text = 'transit_peptide'::text)) OR ((cvterm.name)::text = 'nuclear_localization_signal'::text)) OR ((cvterm.name)::text = 'endosomal_localization_signal'::text)) OR ((cvterm.name)::text = 'lysosomal_localization_signal'::text)) OR ((cvterm.name)::text = 'nuclear_export_signal'::text)) OR ((cvterm.name)::text = 'nuclear_rim_localization_signal'::text)) OR ((cvterm.name)::text = 'cleaved_initiator_methionine'::text)) OR ((cvterm.name)::text = 'intein'::text)) OR ((cvterm.name)::text = 'propeptide_cleavage_site'::text)) OR ((cvterm.name)::text = 'propeptide'::text)) OR ((cvterm.name)::text = 'cleaved_for_gpi_anchor_region'::text)) OR ((cvterm.name)::text = 'lipoprotein_signal_peptide'::text)) OR ((cvterm.name)::text = 'n_terminal_region'::text)) OR ((cvterm.name)::text = 'c_terminal_region'::text)) OR ((cvterm.name)::text = 'central_hydrophobic_region_of_signal_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_domain'::text)) OR ((cvterm.name)::text = 'polypeptide_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_repeat'::text)) OR ((cvterm.name)::text = 'biochemical_region_of_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_conserved_motif'::text)) OR ((cvterm.name)::text = 'post_translationally_modified_region'::text)) OR ((cvterm.name)::text = 'conformational_switch'::text)) OR ((cvterm.name)::text = 'molecular_contact_region'::text)) OR ((cvterm.name)::text = 'polypeptide_binding_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_catalytic_motif'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text)) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'non_transcribed_region'::text)) OR ((cvterm.name)::text = 'gene_fragment'::text)) OR ((cvterm.name)::text = 'TSS_region'::text)) OR ((cvterm.name)::text = 'gene_segment'::text)) OR ((cvterm.name)::text = 'pseudogenic_gene_segment'::text)) OR ((cvterm.name)::text = 'mobile_intron'::text)) OR ((cvterm.name)::text = 'extrachromosomal_mobile_genetic_element'::text)) OR ((cvterm.name)::text = 'integrated_mobile_genetic_element'::text)) OR ((cvterm.name)::text = 'natural_transposable_element'::text)) OR ((cvterm.name)::text = 'viral_sequence'::text)) OR ((cvterm.name)::text = 'natural_plasmid'::text)) OR ((cvterm.name)::text = 'phage_sequence'::text)) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'transposable_element'::text)) OR ((cvterm.name)::text = 'proviral_region'::text)) OR ((cvterm.name)::text = 'integron'::text)) OR ((cvterm.name)::text = 'genomic_island'::text)) OR ((cvterm.name)::text = 'integrated_plasmid'::text)) OR ((cvterm.name)::text = 'cointegrated_plasmid'::text)) OR ((cvterm.name)::text = 'retrotransposon'::text)) OR ((cvterm.name)::text = 'DNA_transposon'::text)) OR ((cvterm.name)::text = 'foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'transgenic_transposable_element'::text)) OR ((cvterm.name)::text = 'natural_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'nested_transposon'::text)) OR ((cvterm.name)::text = 'LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'LINE_element'::text)) OR ((cvterm.name)::text = 'SINE_element'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat_element'::text)) OR ((cvterm.name)::text = 'foldback_element'::text)) OR ((cvterm.name)::text = 'conjugative_transposon'::text)) OR ((cvterm.name)::text = 'helitron'::text)) OR ((cvterm.name)::text = 'p_element'::text)) OR ((cvterm.name)::text = 'MITE'::text)) OR ((cvterm.name)::text = 'insertion_sequence'::text)) OR ((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'prophage'::text)) OR ((cvterm.name)::text = 'pathogenic_island'::text)) OR ((cvterm.name)::text = 'metabolic_island'::text)) OR ((cvterm.name)::text = 'adaptive_island'::text)) OR ((cvterm.name)::text = 'symbiosis_island'::text)) OR ((cvterm.name)::text = 'cryptic_prophage'::text)) OR ((cvterm.name)::text = 'defective_conjugative_transposon'::text)) OR ((cvterm.name)::text = 'plasmid'::text)) OR ((cvterm.name)::text = 'chromosome'::text)) OR ((cvterm.name)::text = 'vector_replicon'::text)) OR ((cvterm.name)::text = 'maxicircle'::text)) OR ((cvterm.name)::text = 'minicircle'::text)) OR ((cvterm.name)::text = 'viral_sequence'::text)) OR ((cvterm.name)::text = 'engineered_plasmid'::text)) OR ((cvterm.name)::text = 'episome'::text)) OR ((cvterm.name)::text = 'natural_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'mitochondrial_chromosome'::text)) OR ((cvterm.name)::text = 'chloroplast_chromosome'::text)) OR ((cvterm.name)::text = 'chromoplast_chromosome'::text)) OR ((cvterm.name)::text = 'cyanelle_chromosome'::text)) OR ((cvterm.name)::text = 'leucoplast_chromosome'::text)) OR ((cvterm.name)::text = 'macronuclear_chromosome'::text)) OR ((cvterm.name)::text = 'micronuclear_chromosome'::text)) OR ((cvterm.name)::text = 'nuclear_chromosome'::text)) OR ((cvterm.name)::text = 'nucleomorphic_chromosome'::text)) OR ((cvterm.name)::text = 'DNA_chromosome'::text)) OR ((cvterm.name)::text = 'RNA_chromosome'::text)) OR ((cvterm.name)::text = 'apicoplast_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'YAC'::text)) OR ((cvterm.name)::text = 'BAC'::text)) OR ((cvterm.name)::text = 'PAC'::text)) OR ((cvterm.name)::text = 'cosmid'::text)) OR ((cvterm.name)::text = 'phagemid'::text)) OR ((cvterm.name)::text = 'fosmid'::text)) OR ((cvterm.name)::text = 'lambda_vector'::text)) OR ((cvterm.name)::text = 'plasmid_vector'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'phage_sequence'::text)) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'modified_RNA_base_feature'::text)) OR ((cvterm.name)::text = 'inosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanine'::text)) OR ((cvterm.name)::text = 'ribothymidine'::text)) OR ((cvterm.name)::text = 'modified_adenosine'::text)) OR ((cvterm.name)::text = 'modified_cytidine'::text)) OR ((cvterm.name)::text = 'modified_guanosine'::text)) OR ((cvterm.name)::text = 'modified_uridine'::text)) OR ((cvterm.name)::text = 'modified_inosine'::text)) OR ((cvterm.name)::text = 'methylinosine'::text)) OR ((cvterm.name)::text = 'one_methylinosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylinosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylinosine'::text)) OR ((cvterm.name)::text = 'one_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'N6_glycinylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_threonyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyl_N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_hydroxynorvalylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosyladenosine_phosphate'::text)) OR ((cvterm.name)::text = 'N6_N6_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_2_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_N6_2_prime_O_trimethyladenosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_acetyladenosine'::text)) OR ((cvterm.name)::text = 'three_methylcytidine'::text)) OR ((cvterm.name)::text = 'five_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_thiocytidine'::text)) OR ((cvterm.name)::text = 'N4_acetylcytidine'::text)) OR ((cvterm.name)::text = 'five_formylcytidine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'N4_acetyl_2_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'lysidine'::text)) OR ((cvterm.name)::text = 'N4_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_2_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'five_hydroxymethylcytidine'::text)) OR ((cvterm.name)::text = 'five_formyl_two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_N4_2_prime_O_trimethylcytidine'::text)) OR ((cvterm.name)::text = 'seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'one_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_methylguanosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_2_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_2_prime_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosylguanosine_phosphate'::text)) OR ((cvterm.name)::text = 'wybutosine'::text)) OR ((cvterm.name)::text = 'peroxywybutosine'::text)) OR ((cvterm.name)::text = 'hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'undermodified_hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'wyosine'::text)) OR ((cvterm.name)::text = 'methylwyosine'::text)) OR ((cvterm.name)::text = 'N2_7_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_7_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'four_demethylwyosine'::text)) OR ((cvterm.name)::text = 'isowyosine'::text)) OR ((cvterm.name)::text = 'N2_7_2prirme_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'queuosine'::text)) OR ((cvterm.name)::text = 'epoxyqueuosine'::text)) OR ((cvterm.name)::text = 'galactosyl_queuosine'::text)) OR ((cvterm.name)::text = 'mannosyl_queuosine'::text)) OR ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'archaeosine'::text)) OR ((cvterm.name)::text = 'dihydrouridine'::text)) OR ((cvterm.name)::text = 'pseudouridine'::text)) OR ((cvterm.name)::text = 'five_methyluridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'one_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_thiouridine'::text)) OR ((cvterm.name)::text = 'four_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methyl_2_thiouridine'::text)) OR ((cvterm.name)::text = 'two_thio_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'three_three_amino_three_carboxypropyl_uridine'::text)) OR ((cvterm.name)::text = 'five_hydroxyuridine'::text)) OR ((cvterm.name)::text = 'five_methoxyuridine'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_aminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_selenouridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'three_methyluridine'::text)) OR ((cvterm.name)::text = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethyluridine'::text)) OR ((cvterm.name)::text = 'three_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'five_methyldihydrouridine'::text)) OR ((cvterm.name)::text = 'three_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyluridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'catalytic_residue'::text)) OR ((cvterm.name)::text = 'modified_amino_acid_feature'::text)) OR ((cvterm.name)::text = 'alanine'::text)) OR ((cvterm.name)::text = 'valine'::text)) OR ((cvterm.name)::text = 'leucine'::text)) OR ((cvterm.name)::text = 'isoleucine'::text)) OR ((cvterm.name)::text = 'proline'::text)) OR ((cvterm.name)::text = 'tryptophan'::text)) OR ((cvterm.name)::text = 'phenylalanine'::text)) OR ((cvterm.name)::text = 'methionine'::text)) OR ((cvterm.name)::text = 'glycine'::text)) OR ((cvterm.name)::text = 'serine'::text)) OR ((cvterm.name)::text = 'threonine'::text)) OR ((cvterm.name)::text = 'tyrosine'::text)) OR ((cvterm.name)::text = 'cysteine'::text)) OR ((cvterm.name)::text = 'glutamine'::text)) OR ((cvterm.name)::text = 'asparagine'::text)) OR ((cvterm.name)::text = 'lysine'::text)) OR ((cvterm.name)::text = 'arginine'::text)) OR ((cvterm.name)::text = 'histidine'::text)) OR ((cvterm.name)::text = 'aspartic_acid'::text)) OR ((cvterm.name)::text = 'glutamic_acid'::text)) OR ((cvterm.name)::text = 'selenocysteine'::text)) OR ((cvterm.name)::text = 'pyrrolysine'::text)) OR ((cvterm.name)::text = 'modified_glycine'::text)) OR ((cvterm.name)::text = 'modified_L_alanine'::text)) OR ((cvterm.name)::text = 'modified_L_asparagine'::text)) OR ((cvterm.name)::text = 'modified_L_aspartic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_cysteine'::text)) OR ((cvterm.name)::text = 'modified_L_glutamic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_threonine'::text)) OR ((cvterm.name)::text = 'modified_L_tryptophan'::text)) OR ((cvterm.name)::text = 'modified_L_glutamine'::text)) OR ((cvterm.name)::text = 'modified_L_methionine'::text)) OR ((cvterm.name)::text = 'modified_L_isoleucine'::text)) OR ((cvterm.name)::text = 'modified_L_phenylalanine'::text)) OR ((cvterm.name)::text = 'modified_L_histidine'::text)) OR ((cvterm.name)::text = 'modified_L_serine'::text)) OR ((cvterm.name)::text = 'modified_L_lysine'::text)) OR ((cvterm.name)::text = 'modified_L_leucine'::text)) OR ((cvterm.name)::text = 'modified_L_selenocysteine'::text)) OR ((cvterm.name)::text = 'modified_L_valine'::text)) OR ((cvterm.name)::text = 'modified_L_proline'::text)) OR ((cvterm.name)::text = 'modified_L_tyrosine'::text)) OR ((cvterm.name)::text = 'modified_L_arginine'::text)) OR ((cvterm.name)::text = 'heritable_phenotypic_marker'::text)) OR ((cvterm.name)::text = 'DArT_marker'::text)) OR ((cvterm.name)::text = 'nucleotide_motif'::text)) OR ((cvterm.name)::text = 'DNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_motif'::text)) OR ((cvterm.name)::text = 'PSE_motif'::text)) OR ((cvterm.name)::text = 'CAAT_signal'::text)) OR ((cvterm.name)::text = 'minus_10_signal'::text)) OR ((cvterm.name)::text = 'minus_35_signal'::text)) OR ((cvterm.name)::text = 'DRE_motif'::text)) OR ((cvterm.name)::text = 'E_box_motif'::text)) OR ((cvterm.name)::text = 'INR1_motif'::text)) OR ((cvterm.name)::text = 'GAGA_motif'::text)) OR ((cvterm.name)::text = 'octamer_motif'::text)) OR ((cvterm.name)::text = 'retinoic_acid_responsive_element'::text)) OR ((cvterm.name)::text = 'promoter_element'::text)) OR ((cvterm.name)::text = 'DCE_SI'::text)) OR ((cvterm.name)::text = 'DCE_SII'::text)) OR ((cvterm.name)::text = 'DCE_SIII'::text)) OR ((cvterm.name)::text = 'minus_12_signal'::text)) OR ((cvterm.name)::text = 'minus_24_signal'::text)) OR ((cvterm.name)::text = 'GC_rich_promoter_region'::text)) OR ((cvterm.name)::text = 'DMv4_motif'::text)) OR ((cvterm.name)::text = 'DMv5_motif'::text)) OR ((cvterm.name)::text = 'DMv3_motif'::text)) OR ((cvterm.name)::text = 'DMv2_motif'::text)) OR ((cvterm.name)::text = 'DPE1_motif'::text)) OR ((cvterm.name)::text = 'DMv1_motif'::text)) OR ((cvterm.name)::text = 'NDM2_motif'::text)) OR ((cvterm.name)::text = 'NDM3_motif'::text)) OR ((cvterm.name)::text = 'core_promoter_element'::text)) OR ((cvterm.name)::text = 'regulatory_promoter_element'::text)) OR ((cvterm.name)::text = 'INR_motif'::text)) OR ((cvterm.name)::text = 'DPE_motif'::text)) OR ((cvterm.name)::text = 'BREu_motif'::text)) OR ((cvterm.name)::text = 'TATA_box'::text)) OR ((cvterm.name)::text = 'A_box'::text)) OR ((cvterm.name)::text = 'B_box'::text)) OR ((cvterm.name)::text = 'C_box'::text)) OR ((cvterm.name)::text = 'MTE'::text)) OR ((cvterm.name)::text = 'BREd_motif'::text)) OR ((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'proximal_promoter_element'::text)) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'A_minor_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_junction_loop'::text)) OR ((cvterm.name)::text = 'hammerhead_ribozyme'::text)) OR ((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'K_turn_RNA_motif'::text)) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_hook_turn'::text)) OR ((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'sticky_end_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'modified_base'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_gene'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'methylated_base_feature'::text)) OR ((cvterm.name)::text = 'methylated_C'::text)) OR ((cvterm.name)::text = 'methylated_A'::text)) OR ((cvterm.name)::text = 'gene_rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'paternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'allelically_excluded_gene'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'operon'::text)) OR ((cvterm.name)::text = 'mating_type_region'::text)) OR ((cvterm.name)::text = 'gene_array'::text)) OR ((cvterm.name)::text = 'gene_subarray'::text)) OR ((cvterm.name)::text = 'gene_cassette_array'::text)) OR ((cvterm.name)::text = 'regulon'::text)) OR ((cvterm.name)::text = 'sequence_length_variation'::text)) OR ((cvterm.name)::text = 'MNP'::text)) OR ((cvterm.name)::text = 'SNV'::text)) OR ((cvterm.name)::text = 'complex_substitution'::text)) OR ((cvterm.name)::text = 'simple_sequence_length_variation'::text)) OR ((cvterm.name)::text = 'SNP'::text)) OR ((cvterm.name)::text = 'point_mutation'::text)) OR ((cvterm.name)::text = 'transition'::text)) OR ((cvterm.name)::text = 'transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'flanking_region'::text)) OR ((cvterm.name)::text = 'repeat_component'::text)) OR ((cvterm.name)::text = 'transposable_element_flanking_region'::text)) OR ((cvterm.name)::text = 'five_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'three_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon_polymeric_tract'::text)) OR ((cvterm.name)::text = 'LTR_component'::text)) OR ((cvterm.name)::text = 'repeat_fragment'::text)) OR ((cvterm.name)::text = 'transposon_fragment'::text)) OR ((cvterm.name)::text = 'U5_LTR_region'::text)) OR ((cvterm.name)::text = 'R_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_LTR_region'::text)) OR ((cvterm.name)::text = 'three_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'five_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'region'::text));
- --
- -- Name: regional_centromere; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW regional_centromere AS
- SELECT feature.feature_id AS regional_centromere_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'regional_centromere'::text);
- --
- -- Name: regional_centromere_central_core; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW regional_centromere_central_core AS
- SELECT feature.feature_id AS regional_centromere_central_core_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'regional_centromere_central_core'::text);
- --
- -- Name: regional_centromere_inner_repeat_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW regional_centromere_inner_repeat_region AS
- SELECT feature.feature_id AS regional_centromere_inner_repeat_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'regional_centromere_inner_repeat_region'::text);
- --
- -- Name: regional_centromere_outer_repeat_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW regional_centromere_outer_repeat_region AS
- SELECT feature.feature_id AS regional_centromere_outer_repeat_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'regional_centromere_outer_repeat_region'::text);
- --
- -- Name: regulated; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW regulated AS
- SELECT feature.feature_id AS regulated_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((cvterm.name)::text = 'transcriptionally_regulated'::text) OR ((cvterm.name)::text = 'post_translationally_regulated'::text)) OR ((cvterm.name)::text = 'translationally_regulated'::text)) OR ((cvterm.name)::text = 'imprinted'::text)) OR ((cvterm.name)::text = 'transcriptionally_constitutive'::text)) OR ((cvterm.name)::text = 'transcriptionally_induced'::text)) OR ((cvterm.name)::text = 'transcriptionally_repressed'::text)) OR ((cvterm.name)::text = 'autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'silenced'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_stability'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_modification'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'regulated'::text));
- --
- -- Name: regulatory_promoter_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW regulatory_promoter_element AS
- SELECT feature.feature_id AS regulatory_promoter_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'proximal_promoter_element'::text) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'regulatory_promoter_element'::text));
- --
- -- Name: regulatory_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW regulatory_region AS
- SELECT feature.feature_id AS regulatory_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'transcription_regulatory_region'::text) OR ((cvterm.name)::text = 'translation_regulatory_region'::text)) OR ((cvterm.name)::text = 'recombination_regulatory_region'::text)) OR ((cvterm.name)::text = 'replication_regulatory_region'::text)) OR ((cvterm.name)::text = 'terminator'::text)) OR ((cvterm.name)::text = 'TF_binding_site'::text)) OR ((cvterm.name)::text = 'polyA_signal_sequence'::text)) OR ((cvterm.name)::text = 'gene_group_regulatory_region'::text)) OR ((cvterm.name)::text = 'transcriptional_cis_regulatory_region'::text)) OR ((cvterm.name)::text = 'splicing_regulatory_region'::text)) OR ((cvterm.name)::text = 'cis_regulatory_frameshift_element'::text)) OR ((cvterm.name)::text = 'intronic_regulatory_region'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text)) OR ((cvterm.name)::text = 'eukaryotic_terminator'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'terminator_of_type_2_RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'operator'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'promoter'::text)) OR ((cvterm.name)::text = 'insulator'::text)) OR ((cvterm.name)::text = 'CRM'::text)) OR ((cvterm.name)::text = 'promoter_targeting_sequence'::text)) OR ((cvterm.name)::text = 'ISRE'::text)) OR ((cvterm.name)::text = 'bidirectional_promoter'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_I_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'Phage_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_core_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'locus_control_region'::text)) OR ((cvterm.name)::text = 'enhancer'::text)) OR ((cvterm.name)::text = 'silencer'::text)) OR ((cvterm.name)::text = 'enhancer_bound_by_factor'::text)) OR ((cvterm.name)::text = 'shadow_enhancer'::text)) OR ((cvterm.name)::text = 'splice_enhancer'::text)) OR ((cvterm.name)::text = 'intronic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'exonic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'attenuator'::text)) OR ((cvterm.name)::text = 'regulatory_region'::text));
- --
- -- Name: regulatory_region_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW regulatory_region_variant AS
- SELECT feature.feature_id AS regulatory_region_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'TF_binding_site_variant'::text) OR ((cvterm.name)::text = 'regulatory_region_variant'::text));
- --
- -- Name: regulon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW regulon AS
- SELECT feature.feature_id AS regulon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'regulon'::text);
- --
- -- Name: remark; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW remark AS
- SELECT feature.feature_id AS remark_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((cvterm.name)::text = 'sequence_difference'::text) OR ((cvterm.name)::text = 'experimental_result_region'::text)) OR ((cvterm.name)::text = 'polypeptide_sequencing_information'::text)) OR ((cvterm.name)::text = 'possible_base_call_error'::text)) OR ((cvterm.name)::text = 'possible_assembly_error'::text)) OR ((cvterm.name)::text = 'assembly_error_correction'::text)) OR ((cvterm.name)::text = 'base_call_error_correction'::text)) OR ((cvterm.name)::text = 'overlapping_feature_set'::text)) OR ((cvterm.name)::text = 'no_output'::text)) OR ((cvterm.name)::text = 'overlapping_EST_set'::text)) OR ((cvterm.name)::text = 'non_adjacent_residues'::text)) OR ((cvterm.name)::text = 'non_terminal_residue'::text)) OR ((cvterm.name)::text = 'sequence_conflict'::text)) OR ((cvterm.name)::text = 'sequence_uncertainty'::text)) OR ((cvterm.name)::text = 'contig_collection'::text)) OR ((cvterm.name)::text = 'remark'::text));
- --
- -- Name: repeat_component; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW repeat_component AS
- SELECT feature.feature_id AS repeat_component_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((cvterm.name)::text = 'non_LTR_retrotransposon_polymeric_tract'::text) OR ((cvterm.name)::text = 'LTR_component'::text)) OR ((cvterm.name)::text = 'repeat_fragment'::text)) OR ((cvterm.name)::text = 'transposon_fragment'::text)) OR ((cvterm.name)::text = 'U5_LTR_region'::text)) OR ((cvterm.name)::text = 'R_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_LTR_region'::text)) OR ((cvterm.name)::text = 'three_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'five_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'repeat_component'::text));
- --
- -- Name: repeat_fragment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW repeat_fragment AS
- SELECT feature.feature_id AS repeat_fragment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'repeat_fragment'::text);
- --
- -- Name: repeat_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW repeat_region AS
- SELECT feature.feature_id AS repeat_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((cvterm.name)::text = 'long_terminal_repeat'::text) OR ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text)) OR ((cvterm.name)::text = 'inverted_repeat'::text)) OR ((cvterm.name)::text = 'direct_repeat'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon_polymeric_tract'::text)) OR ((cvterm.name)::text = 'dispersed_repeat'::text)) OR ((cvterm.name)::text = 'tandem_repeat'::text)) OR ((cvterm.name)::text = 'X_element_combinatorial_repeat'::text)) OR ((cvterm.name)::text = 'Y_prime_element'::text)) OR ((cvterm.name)::text = 'telomeric_repeat'::text)) OR ((cvterm.name)::text = 'nested_repeat'::text)) OR ((cvterm.name)::text = 'centromeric_repeat'::text)) OR ((cvterm.name)::text = 'five_prime_LTR'::text)) OR ((cvterm.name)::text = 'three_prime_LTR'::text)) OR ((cvterm.name)::text = 'solo_LTR'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'five_prime_terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'three_prime_terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'target_site_duplication'::text)) OR ((cvterm.name)::text = 'CRISPR'::text)) OR ((cvterm.name)::text = 'satellite_DNA'::text)) OR ((cvterm.name)::text = 'microsatellite'::text)) OR ((cvterm.name)::text = 'minisatellite'::text)) OR ((cvterm.name)::text = 'dinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'trinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'tetranucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'nested_tandem_repeat'::text)) OR ((cvterm.name)::text = 'regional_centromere_inner_repeat_region'::text)) OR ((cvterm.name)::text = 'regional_centromere_outer_repeat_region'::text)) OR ((cvterm.name)::text = 'repeat_region'::text));
- --
- -- Name: repeat_unit; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW repeat_unit AS
- SELECT feature.feature_id AS repeat_unit_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'repeat_unit'::text);
- --
- -- Name: replication_regulatory_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW replication_regulatory_region AS
- SELECT feature.feature_id AS replication_regulatory_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'replication_regulatory_region'::text);
- --
- -- Name: replicon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW replicon AS
- SELECT feature.feature_id AS replicon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'plasmid'::text) OR ((cvterm.name)::text = 'chromosome'::text)) OR ((cvterm.name)::text = 'vector_replicon'::text)) OR ((cvterm.name)::text = 'maxicircle'::text)) OR ((cvterm.name)::text = 'minicircle'::text)) OR ((cvterm.name)::text = 'viral_sequence'::text)) OR ((cvterm.name)::text = 'engineered_plasmid'::text)) OR ((cvterm.name)::text = 'episome'::text)) OR ((cvterm.name)::text = 'natural_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'mitochondrial_chromosome'::text)) OR ((cvterm.name)::text = 'chloroplast_chromosome'::text)) OR ((cvterm.name)::text = 'chromoplast_chromosome'::text)) OR ((cvterm.name)::text = 'cyanelle_chromosome'::text)) OR ((cvterm.name)::text = 'leucoplast_chromosome'::text)) OR ((cvterm.name)::text = 'macronuclear_chromosome'::text)) OR ((cvterm.name)::text = 'micronuclear_chromosome'::text)) OR ((cvterm.name)::text = 'nuclear_chromosome'::text)) OR ((cvterm.name)::text = 'nucleomorphic_chromosome'::text)) OR ((cvterm.name)::text = 'DNA_chromosome'::text)) OR ((cvterm.name)::text = 'RNA_chromosome'::text)) OR ((cvterm.name)::text = 'apicoplast_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'YAC'::text)) OR ((cvterm.name)::text = 'BAC'::text)) OR ((cvterm.name)::text = 'PAC'::text)) OR ((cvterm.name)::text = 'cosmid'::text)) OR ((cvterm.name)::text = 'phagemid'::text)) OR ((cvterm.name)::text = 'fosmid'::text)) OR ((cvterm.name)::text = 'lambda_vector'::text)) OR ((cvterm.name)::text = 'plasmid_vector'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'phage_sequence'::text)) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'replicon'::text));
- --
- -- Name: rescue; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rescue AS
- SELECT feature.feature_id AS rescue_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rescue'::text);
- --
- -- Name: rescue_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rescue_gene AS
- SELECT feature.feature_id AS rescue_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'wild_type_rescue_gene'::text) OR ((cvterm.name)::text = 'rescue_gene'::text));
- --
- -- Name: rescue_mini_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rescue_mini_gene AS
- SELECT feature.feature_id AS rescue_mini_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rescue_mini_gene'::text);
- --
- -- Name: rescue_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rescue_region AS
- SELECT feature.feature_id AS rescue_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'engineered_rescue_region'::text) OR ((cvterm.name)::text = 'rescue_region'::text));
- --
- -- Name: resolution_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW resolution_site AS
- SELECT feature.feature_id AS resolution_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'loxP_site'::text) OR ((cvterm.name)::text = 'dif_site'::text)) OR ((cvterm.name)::text = 'resolution_site'::text));
- --
- -- Name: restriction_enzyme_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW restriction_enzyme_binding_site AS
- SELECT feature.feature_id AS restriction_enzyme_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'restriction_enzyme_binding_site'::text);
- --
- -- Name: restriction_enzyme_cleavage_junction; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW restriction_enzyme_cleavage_junction AS
- SELECT feature.feature_id AS restriction_enzyme_cleavage_junction_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_junction'::text) OR ((cvterm.name)::text = 'single_strand_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'five_prime_restriction_enzyme_junction'::text)) OR ((cvterm.name)::text = 'three_prime_restriction_enzyme_junction'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_cleavage_junction'::text));
- --
- -- Name: restriction_enzyme_recognition_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW restriction_enzyme_recognition_site AS
- SELECT feature.feature_id AS restriction_enzyme_recognition_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_site'::text) OR ((cvterm.name)::text = 'sticky_end_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_recognition_site'::text));
- --
- -- Name: restriction_enzyme_single_strand_overhang; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW restriction_enzyme_single_strand_overhang AS
- SELECT feature.feature_id AS restriction_enzyme_single_strand_overhang_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'restriction_enzyme_single_strand_overhang'::text);
- --
- -- Name: restriction_fragment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW restriction_fragment AS
- SELECT feature.feature_id AS restriction_fragment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'RFLP_fragment'::text) OR ((cvterm.name)::text = 'restriction_fragment'::text));
- --
- -- Name: retinoic_acid_responsive_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW retinoic_acid_responsive_element AS
- SELECT feature.feature_id AS retinoic_acid_responsive_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'retinoic_acid_responsive_element'::text);
- --
- -- Name: retrogene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW retrogene AS
- SELECT feature.feature_id AS retrogene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'retrogene'::text);
- --
- -- Name: retron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW retron AS
- SELECT feature.feature_id AS retron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'retron'::text);
- --
- -- Name: retrotransposed; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW retrotransposed AS
- SELECT feature.feature_id AS retrotransposed_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'retrotransposed'::text);
- --
- -- Name: retrotransposon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW retrotransposon AS
- SELECT feature.feature_id AS retrotransposon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'LTR_retrotransposon'::text) OR ((cvterm.name)::text = 'non_LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'LINE_element'::text)) OR ((cvterm.name)::text = 'SINE_element'::text)) OR ((cvterm.name)::text = 'retrotransposon'::text));
- --
- -- Name: reverse; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW reverse AS
- SELECT feature.feature_id AS reverse_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'reverse'::text);
- --
- -- Name: reverse_hoogsteen_base_pair; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW reverse_hoogsteen_base_pair AS
- SELECT feature.feature_id AS reverse_hoogsteen_base_pair_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'reverse_Hoogsteen_base_pair'::text);
- --
- -- Name: reverse_primer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW reverse_primer AS
- SELECT feature.feature_id AS reverse_primer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'reverse_primer'::text);
- --
- -- Name: rflp_fragment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rflp_fragment AS
- SELECT feature.feature_id AS rflp_fragment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RFLP_fragment'::text);
- --
- -- Name: rh_map; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rh_map AS
- SELECT feature.feature_id AS rh_map_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RH_map'::text);
- --
- -- Name: rho_dependent_bacterial_terminator; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rho_dependent_bacterial_terminator AS
- SELECT feature.feature_id AS rho_dependent_bacterial_terminator_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text);
- --
- -- Name: rho_independent_bacterial_terminator; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rho_independent_bacterial_terminator AS
- SELECT feature.feature_id AS rho_independent_bacterial_terminator_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text);
- --
- -- Name: ribosome_entry_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ribosome_entry_site AS
- SELECT feature.feature_id AS ribosome_entry_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'internal_ribosome_entry_site'::text) OR ((cvterm.name)::text = 'Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'kozak_sequence'::text)) OR ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'ribosome_entry_site'::text));
- --
- -- Name: riboswitch; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW riboswitch AS
- SELECT feature.feature_id AS riboswitch_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'riboswitch'::text);
- --
- -- Name: ribothymidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ribothymidine AS
- SELECT feature.feature_id AS ribothymidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'ribothymidine'::text);
- --
- -- Name: ribozyme; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ribozyme AS
- SELECT feature.feature_id AS ribozyme_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'ribozyme'::text);
- --
- -- Name: ribozymic; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ribozymic AS
- SELECT feature.feature_id AS ribozymic_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'ribozymic'::text);
- --
- -- Name: right_handed_peptide_helix; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW right_handed_peptide_helix AS
- SELECT feature.feature_id AS right_handed_peptide_helix_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'alpha_helix'::text) OR ((cvterm.name)::text = 'pi_helix'::text)) OR ((cvterm.name)::text = 'three_ten_helix'::text)) OR ((cvterm.name)::text = 'right_handed_peptide_helix'::text));
- --
- -- Name: ring_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ring_chromosome AS
- SELECT feature.feature_id AS ring_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'inverted_ring_chromosome'::text) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'ring_chromosome'::text));
- --
- -- Name: rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rna AS
- SELECT feature.feature_id AS rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNA'::text);
- --
- -- Name: rna_6s; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rna_6s AS
- SELECT feature.feature_id AS rna_6s_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNA_6S'::text);
- --
- -- Name: rna_aptamer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rna_aptamer AS
- SELECT feature.feature_id AS rna_aptamer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNA_aptamer'::text);
- --
- -- Name: rna_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rna_chromosome AS
- SELECT feature.feature_id AS rna_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'single_stranded_RNA_chromosome'::text) OR ((cvterm.name)::text = 'double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'RNA_chromosome'::text));
- --
- -- Name: rna_hook_turn; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rna_hook_turn AS
- SELECT feature.feature_id AS rna_hook_turn_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNA_hook_turn'::text);
- --
- -- Name: rna_internal_loop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rna_internal_loop AS
- SELECT feature.feature_id AS rna_internal_loop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text) OR ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'K_turn_RNA_motif'::text)) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_internal_loop'::text));
- --
- -- Name: rna_junction_loop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rna_junction_loop AS
- SELECT feature.feature_id AS rna_junction_loop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'RNA_hook_turn'::text) OR ((cvterm.name)::text = 'RNA_junction_loop'::text));
- --
- -- Name: rna_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rna_motif AS
- SELECT feature.feature_id AS rna_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((cvterm.name)::text = 'RNA_internal_loop'::text) OR ((cvterm.name)::text = 'A_minor_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_junction_loop'::text)) OR ((cvterm.name)::text = 'hammerhead_ribozyme'::text)) OR ((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'K_turn_RNA_motif'::text)) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_hook_turn'::text)) OR ((cvterm.name)::text = 'RNA_motif'::text));
- --
- -- Name: rna_polymerase_ii_tata_box; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rna_polymerase_ii_tata_box AS
- SELECT feature.feature_id AS rna_polymerase_ii_tata_box_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text);
- --
- -- Name: rna_polymerase_iii_tata_box; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rna_polymerase_iii_tata_box AS
- SELECT feature.feature_id AS rna_polymerase_iii_tata_box_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text);
- --
- -- Name: rna_polymerase_promoter; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rna_polymerase_promoter AS
- SELECT feature.feature_id AS rna_polymerase_promoter_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((cvterm.name)::text = 'RNApol_I_promoter'::text) OR ((cvterm.name)::text = 'RNApol_II_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'Phage_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_core_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_promoter'::text));
- --
- -- Name: rna_sequence_secondary_structure; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rna_sequence_secondary_structure AS
- SELECT feature.feature_id AS rna_sequence_secondary_structure_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'stem_loop'::text) OR ((cvterm.name)::text = 'tetraloop'::text)) OR ((cvterm.name)::text = 'RNA_sequence_secondary_structure'::text));
- --
- -- Name: rnai_reagent; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rnai_reagent AS
- SELECT feature.feature_id AS rnai_reagent_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNAi_reagent'::text);
- --
- -- Name: rnapol_i_promoter; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rnapol_i_promoter AS
- SELECT feature.feature_id AS rnapol_i_promoter_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNApol_I_promoter'::text);
- --
- -- Name: rnapol_ii_core_promoter; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rnapol_ii_core_promoter AS
- SELECT feature.feature_id AS rnapol_ii_core_promoter_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNApol_II_core_promoter'::text);
- --
- -- Name: rnapol_ii_promoter; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rnapol_ii_promoter AS
- SELECT feature.feature_id AS rnapol_ii_promoter_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'RNApol_II_core_promoter'::text) OR ((cvterm.name)::text = 'RNApol_II_promoter'::text));
- --
- -- Name: rnapol_iii_promoter; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rnapol_iii_promoter AS
- SELECT feature.feature_id AS rnapol_iii_promoter_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter'::text));
- --
- -- Name: rnapol_iii_promoter_type_1; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rnapol_iii_promoter_type_1 AS
- SELECT feature.feature_id AS rnapol_iii_promoter_type_1_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text);
- --
- -- Name: rnapol_iii_promoter_type_2; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rnapol_iii_promoter_type_2 AS
- SELECT feature.feature_id AS rnapol_iii_promoter_type_2_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text);
- --
- -- Name: rnapol_iii_promoter_type_3; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rnapol_iii_promoter_type_3 AS
- SELECT feature.feature_id AS rnapol_iii_promoter_type_3_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text);
- --
- -- Name: rnase_mrp_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rnase_mrp_rna AS
- SELECT feature.feature_id AS rnase_mrp_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNase_MRP_RNA'::text);
- --
- -- Name: rnase_mrp_rna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rnase_mrp_rna_gene AS
- SELECT feature.feature_id AS rnase_mrp_rna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNase_MRP_RNA_gene'::text);
- --
- -- Name: rnase_p_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rnase_p_rna AS
- SELECT feature.feature_id AS rnase_p_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNase_P_RNA'::text);
- --
- -- Name: rnase_p_rna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rnase_p_rna_gene AS
- SELECT feature.feature_id AS rnase_p_rna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RNase_P_RNA_gene'::text);
- --
- -- Name: robertsonian_fusion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW robertsonian_fusion AS
- SELECT feature.feature_id AS robertsonian_fusion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'Robertsonian_fusion'::text);
- --
- -- Name: rpra_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rpra_rna AS
- SELECT feature.feature_id AS rpra_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RprA_RNA'::text);
- --
- -- Name: rr_tract; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rr_tract AS
- SELECT feature.feature_id AS rr_tract_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RR_tract'::text);
- --
- -- Name: rre_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rre_rna AS
- SELECT feature.feature_id AS rre_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RRE_RNA'::text);
- --
- -- Name: rrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna AS
- SELECT feature.feature_id AS rrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((cvterm.name)::text = 'small_subunit_rRNA'::text) OR ((cvterm.name)::text = 'large_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'rRNA_18S'::text)) OR ((cvterm.name)::text = 'rRNA_16S'::text)) OR ((cvterm.name)::text = 'rRNA_5_8S'::text)) OR ((cvterm.name)::text = 'rRNA_5S'::text)) OR ((cvterm.name)::text = 'rRNA_28S'::text)) OR ((cvterm.name)::text = 'rRNA_23S'::text)) OR ((cvterm.name)::text = 'rRNA_25S'::text)) OR ((cvterm.name)::text = 'rRNA_21S'::text)) OR ((cvterm.name)::text = 'rRNA'::text));
- --
- -- Name: rrna_16s; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_16s AS
- SELECT feature.feature_id AS rrna_16s_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rRNA_16S'::text);
- --
- -- Name: rrna_18s; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_18s AS
- SELECT feature.feature_id AS rrna_18s_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rRNA_18S'::text);
- --
- -- Name: rrna_21s; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_21s AS
- SELECT feature.feature_id AS rrna_21s_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rRNA_21S'::text);
- --
- -- Name: rrna_23s; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_23s AS
- SELECT feature.feature_id AS rrna_23s_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rRNA_23S'::text);
- --
- -- Name: rrna_25s; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_25s AS
- SELECT feature.feature_id AS rrna_25s_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rRNA_25S'::text);
- --
- -- Name: rrna_28s; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_28s AS
- SELECT feature.feature_id AS rrna_28s_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rRNA_28S'::text);
- --
- -- Name: rrna_5_8s; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_5_8s AS
- SELECT feature.feature_id AS rrna_5_8s_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rRNA_5_8S'::text);
- --
- -- Name: rrna_5s; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_5s AS
- SELECT feature.feature_id AS rrna_5s_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rRNA_5S'::text);
- --
- -- Name: rrna_cleavage_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_cleavage_rna AS
- SELECT feature.feature_id AS rrna_cleavage_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rRNA_cleavage_RNA'::text);
- --
- -- Name: rrna_cleavage_snorna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_cleavage_snorna_primary_transcript AS
- SELECT feature.feature_id AS rrna_cleavage_snorna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rRNA_cleavage_snoRNA_primary_transcript'::text);
- --
- -- Name: rrna_encoding; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_encoding AS
- SELECT feature.feature_id AS rrna_encoding_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rRNA_encoding'::text);
- --
- -- Name: rrna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_gene AS
- SELECT feature.feature_id AS rrna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rRNA_gene'::text);
- --
- -- Name: rrna_large_subunit_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_large_subunit_primary_transcript AS
- SELECT feature.feature_id AS rrna_large_subunit_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rRNA_large_subunit_primary_transcript'::text);
- --
- -- Name: rrna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_primary_transcript AS
- SELECT feature.feature_id AS rrna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'rRNA_small_subunit_primary_transcript'::text) OR ((cvterm.name)::text = 'rRNA_large_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_primary_transcript'::text));
- --
- -- Name: rrna_primary_transcript_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_primary_transcript_region AS
- SELECT feature.feature_id AS rrna_primary_transcript_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'transcribed_spacer_region'::text) OR ((cvterm.name)::text = 'internal_transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'external_transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'rRNA_primary_transcript_region'::text));
- --
- -- Name: rrna_small_subunit_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rrna_small_subunit_primary_transcript AS
- SELECT feature.feature_id AS rrna_small_subunit_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'rRNA_small_subunit_primary_transcript'::text);
- --
- -- Name: rst; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rst AS
- SELECT feature.feature_id AS rst_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'three_prime_RST'::text) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'RST'::text));
- --
- -- Name: rst_match; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW rst_match AS
- SELECT feature.feature_id AS rst_match_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'RST_match'::text);
- --
- -- Name: s_gna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW s_gna AS
- SELECT feature.feature_id AS s_gna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'S_GNA'::text);
- --
- -- Name: s_gna_oligo; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW s_gna_oligo AS
- SELECT feature.feature_id AS s_gna_oligo_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'S_GNA_oligo'::text);
- --
- -- Name: sage_tag; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sage_tag AS
- SELECT feature.feature_id AS sage_tag_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SAGE_tag'::text);
- --
- -- Name: sarcin_like_rna_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sarcin_like_rna_motif AS
- SELECT feature.feature_id AS sarcin_like_rna_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text);
- --
- -- Name: satellite_dna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW satellite_dna AS
- SELECT feature.feature_id AS satellite_dna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'microsatellite'::text) OR ((cvterm.name)::text = 'minisatellite'::text)) OR ((cvterm.name)::text = 'dinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'trinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'tetranucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'satellite_DNA'::text));
- --
- -- Name: schellmann_loop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW schellmann_loop AS
- SELECT feature.feature_id AS schellmann_loop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'schellmann_loop_seven'::text) OR ((cvterm.name)::text = 'schellmann_loop_six'::text)) OR ((cvterm.name)::text = 'schellmann_loop'::text));
- --
- -- Name: schellmann_loop_seven; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW schellmann_loop_seven AS
- SELECT feature.feature_id AS schellmann_loop_seven_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'schellmann_loop_seven'::text);
- --
- -- Name: schellmann_loop_six; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW schellmann_loop_six AS
- SELECT feature.feature_id AS schellmann_loop_six_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'schellmann_loop_six'::text);
- --
- -- Name: score; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW score AS
- SELECT feature.feature_id AS score_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'score'::text);
- --
- -- Name: scrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW scrna AS
- SELECT feature.feature_id AS scrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'scRNA'::text);
- --
- -- Name: scrna_encoding; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW scrna_encoding AS
- SELECT feature.feature_id AS scrna_encoding_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'scRNA_encoding'::text);
- --
- -- Name: scrna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW scrna_gene AS
- SELECT feature.feature_id AS scrna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'scRNA_gene'::text);
- --
- -- Name: scrna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW scrna_primary_transcript AS
- SELECT feature.feature_id AS scrna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'scRNA_primary_transcript'::text);
- --
- -- Name: secis_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW secis_element AS
- SELECT feature.feature_id AS secis_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SECIS_element'::text);
- --
- -- Name: selenocysteine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW selenocysteine AS
- SELECT feature.feature_id AS selenocysteine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'selenocysteine'::text);
- --
- -- Name: selenocysteine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW selenocysteine_trna_primary_transcript AS
- SELECT feature.feature_id AS selenocysteine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'selenocysteine_tRNA_primary_transcript'::text);
- --
- -- Name: selenocysteinyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW selenocysteinyl_trna AS
- SELECT feature.feature_id AS selenocysteinyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'selenocysteinyl_tRNA'::text);
- --
- -- Name: sequence_alteration; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequence_alteration AS
- SELECT feature.feature_id AS sequence_alteration_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'deletion'::text) OR ((cvterm.name)::text = 'translocation'::text)) OR ((cvterm.name)::text = 'insertion'::text)) OR ((cvterm.name)::text = 'copy_number_variation'::text)) OR ((cvterm.name)::text = 'UPD'::text)) OR ((cvterm.name)::text = 'structural_alteration'::text)) OR ((cvterm.name)::text = 'substitution'::text)) OR ((cvterm.name)::text = 'indel'::text)) OR ((cvterm.name)::text = 'inversion'::text)) OR ((cvterm.name)::text = 'transgenic_insertion'::text)) OR ((cvterm.name)::text = 'duplication'::text)) OR ((cvterm.name)::text = 'tandem_duplication'::text)) OR ((cvterm.name)::text = 'direct_tandem_duplication'::text)) OR ((cvterm.name)::text = 'inverted_tandem_duplication'::text)) OR ((cvterm.name)::text = 'copy_number_gain'::text)) OR ((cvterm.name)::text = 'copy_number_loss'::text)) OR ((cvterm.name)::text = 'maternal_uniparental_disomy'::text)) OR ((cvterm.name)::text = 'paternal_uniparental_disomy'::text)) OR ((cvterm.name)::text = 'complex_structural_alteration'::text)) OR ((cvterm.name)::text = 'sequence_length_variation'::text)) OR ((cvterm.name)::text = 'MNP'::text)) OR ((cvterm.name)::text = 'SNV'::text)) OR ((cvterm.name)::text = 'complex_substitution'::text)) OR ((cvterm.name)::text = 'simple_sequence_length_variation'::text)) OR ((cvterm.name)::text = 'SNP'::text)) OR ((cvterm.name)::text = 'point_mutation'::text)) OR ((cvterm.name)::text = 'transition'::text)) OR ((cvterm.name)::text = 'transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'sequence_alteration'::text));
- --
- -- Name: sequence_assembly; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequence_assembly AS
- SELECT feature.feature_id AS sequence_assembly_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'supercontig'::text) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'tiling_path'::text)) OR ((cvterm.name)::text = 'virtual_sequence'::text)) OR ((cvterm.name)::text = 'golden_path'::text)) OR ((cvterm.name)::text = 'ultracontig'::text)) OR ((cvterm.name)::text = 'expressed_sequence_assembly'::text)) OR ((cvterm.name)::text = 'sequence_assembly'::text));
- --
- -- Name: sequence_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequence_attribute AS
- SELECT feature.feature_id AS sequence_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'polymer_attribute'::text) OR ((cvterm.name)::text = 'feature_attribute'::text)) OR ((cvterm.name)::text = 'sequence_location'::text)) OR ((cvterm.name)::text = 'variant_quality'::text)) OR ((cvterm.name)::text = 'nucleic_acid'::text)) OR ((cvterm.name)::text = 'synthetic_sequence'::text)) OR ((cvterm.name)::text = 'topology_attribute'::text)) OR ((cvterm.name)::text = 'peptidyl'::text)) OR ((cvterm.name)::text = 'DNA'::text)) OR ((cvterm.name)::text = 'RNA'::text)) OR ((cvterm.name)::text = 'morpholino_backbone'::text)) OR ((cvterm.name)::text = 'PNA'::text)) OR ((cvterm.name)::text = 'LNA'::text)) OR ((cvterm.name)::text = 'TNA'::text)) OR ((cvterm.name)::text = 'GNA'::text)) OR ((cvterm.name)::text = 'cDNA'::text)) OR ((cvterm.name)::text = 'genomic_DNA'::text)) OR ((cvterm.name)::text = 'single_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'double_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'R_GNA'::text)) OR ((cvterm.name)::text = 'S_GNA'::text)) OR ((cvterm.name)::text = 'random_sequence'::text)) OR ((cvterm.name)::text = 'designed_sequence'::text)) OR ((cvterm.name)::text = 'linear'::text)) OR ((cvterm.name)::text = 'circular'::text)) OR ((cvterm.name)::text = 'transcript_attribute'::text)) OR ((cvterm.name)::text = 'bound_by_factor'::text)) OR ((cvterm.name)::text = 'flanked'::text)) OR ((cvterm.name)::text = 'gene_attribute'::text)) OR ((cvterm.name)::text = 'retrotransposed'::text)) OR ((cvterm.name)::text = 'transgenic'::text)) OR ((cvterm.name)::text = 'natural'::text)) OR ((cvterm.name)::text = 'engineered'::text)) OR ((cvterm.name)::text = 'foreign'::text)) OR ((cvterm.name)::text = 'fusion'::text)) OR ((cvterm.name)::text = 'rescue'::text)) OR ((cvterm.name)::text = 'wild_type'::text)) OR ((cvterm.name)::text = 'conserved'::text)) OR ((cvterm.name)::text = 'status'::text)) OR ((cvterm.name)::text = 'intermediate'::text)) OR ((cvterm.name)::text = 'recombinationally_rearranged'::text)) OR ((cvterm.name)::text = 'cryptic'::text)) OR ((cvterm.name)::text = 'strand_attribute'::text)) OR ((cvterm.name)::text = 'direction_attribute'::text)) OR ((cvterm.name)::text = 'enzymatic'::text)) OR ((cvterm.name)::text = 'mobile'::text)) OR ((cvterm.name)::text = 'alteration_attribute'::text)) OR ((cvterm.name)::text = 'experimental_feature_attribute'::text)) OR ((cvterm.name)::text = 'edited'::text)) OR ((cvterm.name)::text = 'capped'::text)) OR ((cvterm.name)::text = 'mRNA_attribute'::text)) OR ((cvterm.name)::text = 'trans_spliced'::text)) OR ((cvterm.name)::text = 'alternatively_spliced'::text)) OR ((cvterm.name)::text = 'monocistronic'::text)) OR ((cvterm.name)::text = 'polycistronic'::text)) OR ((cvterm.name)::text = 'polyadenylated'::text)) OR ((cvterm.name)::text = 'exemplar'::text)) OR ((cvterm.name)::text = 'frameshift'::text)) OR ((cvterm.name)::text = 'recoded'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_framshift'::text)) OR ((cvterm.name)::text = 'codon_redefined'::text)) OR ((cvterm.name)::text = 'recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'minus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'plus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'dicistronic'::text)) OR ((cvterm.name)::text = 'bound_by_protein'::text)) OR ((cvterm.name)::text = 'bound_by_nucleic_acid'::text)) OR ((cvterm.name)::text = 'floxed'::text)) OR ((cvterm.name)::text = 'FRT_flanked'::text)) OR ((cvterm.name)::text = 'protein_coding'::text)) OR ((cvterm.name)::text = 'non_protein_coding'::text)) OR ((cvterm.name)::text = 'gene_to_gene_feature'::text)) OR ((cvterm.name)::text = 'gene_array_member'::text)) OR ((cvterm.name)::text = 'regulated'::text)) OR ((cvterm.name)::text = 'epigenetically_modified'::text)) OR ((cvterm.name)::text = 'encodes_alternately_spliced_transcripts'::text)) OR ((cvterm.name)::text = 'encodes_alternate_transcription_start_sites'::text)) OR ((cvterm.name)::text = 'intein_containing'::text)) OR ((cvterm.name)::text = 'miRNA_encoding'::text)) OR ((cvterm.name)::text = 'rRNA_encoding'::text)) OR ((cvterm.name)::text = 'scRNA_encoding'::text)) OR ((cvterm.name)::text = 'snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'snRNA_encoding'::text)) OR ((cvterm.name)::text = 'SRP_RNA_encoding'::text)) OR ((cvterm.name)::text = 'stRNA_encoding'::text)) OR ((cvterm.name)::text = 'tmRNA_encoding'::text)) OR ((cvterm.name)::text = 'tRNA_encoding'::text)) OR ((cvterm.name)::text = 'gRNA_encoding'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'overlapping'::text)) OR ((cvterm.name)::text = 'inside_intron'::text)) OR ((cvterm.name)::text = 'five_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'five_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'antisense'::text)) OR ((cvterm.name)::text = 'inside_intron_antiparallel'::text)) OR ((cvterm.name)::text = 'inside_intron_parallel'::text)) OR ((cvterm.name)::text = 'operon_member'::text)) OR ((cvterm.name)::text = 'gene_cassette_member'::text)) OR ((cvterm.name)::text = 'gene_subarray_member'::text)) OR ((cvterm.name)::text = 'member_of_regulon'::text)) OR ((cvterm.name)::text = 'cassette_array_member'::text)) OR ((cvterm.name)::text = 'transcriptionally_regulated'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated'::text)) OR ((cvterm.name)::text = 'translationally_regulated'::text)) OR ((cvterm.name)::text = 'imprinted'::text)) OR ((cvterm.name)::text = 'transcriptionally_constitutive'::text)) OR ((cvterm.name)::text = 'transcriptionally_induced'::text)) OR ((cvterm.name)::text = 'transcriptionally_repressed'::text)) OR ((cvterm.name)::text = 'autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'silenced'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_stability'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_modification'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'imprinted'::text)) OR ((cvterm.name)::text = 'allelically_excluded'::text)) OR ((cvterm.name)::text = 'rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'encodes_1_polypeptide'::text)) OR ((cvterm.name)::text = 'encodes_greater_than_1_polypeptide'::text)) OR ((cvterm.name)::text = 'encodes_disjoint_polypeptides'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides'::text)) OR ((cvterm.name)::text = 'encodes_different_polypeptides_different_stop'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides_different_start'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_polypeptides_different_start_and_stop'::text)) OR ((cvterm.name)::text = 'homologous'::text)) OR ((cvterm.name)::text = 'syntenic'::text)) OR ((cvterm.name)::text = 'orthologous'::text)) OR ((cvterm.name)::text = 'paralogous'::text)) OR ((cvterm.name)::text = 'fragmentary'::text)) OR ((cvterm.name)::text = 'predicted'::text)) OR ((cvterm.name)::text = 'validated'::text)) OR ((cvterm.name)::text = 'invalidated'::text)) OR ((cvterm.name)::text = 'independently_known'::text)) OR ((cvterm.name)::text = 'consensus'::text)) OR ((cvterm.name)::text = 'low_complexity'::text)) OR ((cvterm.name)::text = 'whole_genome_sequence_status'::text)) OR ((cvterm.name)::text = 'supported_by_sequence_similarity'::text)) OR ((cvterm.name)::text = 'orphan'::text)) OR ((cvterm.name)::text = 'predicted_by_ab_initio_computation'::text)) OR ((cvterm.name)::text = 'supported_by_domain_match'::text)) OR ((cvterm.name)::text = 'supported_by_EST_or_cDNA'::text)) OR ((cvterm.name)::text = 'experimentally_determined'::text)) OR ((cvterm.name)::text = 'invalidated_by_chimeric_cDNA'::text)) OR ((cvterm.name)::text = 'invalidated_by_genomic_contamination'::text)) OR ((cvterm.name)::text = 'invalidated_by_genomic_polyA_primed_cDNA'::text)) OR ((cvterm.name)::text = 'invalidated_by_partial_processing'::text)) OR ((cvterm.name)::text = 'standard_draft'::text)) OR ((cvterm.name)::text = 'high_quality_draft'::text)) OR ((cvterm.name)::text = 'improved_high_quality_draft'::text)) OR ((cvterm.name)::text = 'annotation_directed_improved_draft'::text)) OR ((cvterm.name)::text = 'noncontiguous_finished'::text)) OR ((cvterm.name)::text = 'finished_genome'::text)) OR ((cvterm.name)::text = 'single'::text)) OR ((cvterm.name)::text = 'double'::text)) OR ((cvterm.name)::text = 'forward'::text)) OR ((cvterm.name)::text = 'reverse'::text)) OR ((cvterm.name)::text = 'ribozymic'::text)) OR ((cvterm.name)::text = 'chromosomal_variation_attribute'::text)) OR ((cvterm.name)::text = 'insertion_attribute'::text)) OR ((cvterm.name)::text = 'inversion_attribute'::text)) OR ((cvterm.name)::text = 'translocaton_attribute'::text)) OR ((cvterm.name)::text = 'duplication_attribute'::text)) OR ((cvterm.name)::text = 'intrachromosomal'::text)) OR ((cvterm.name)::text = 'interchromosomal'::text)) OR ((cvterm.name)::text = 'tandem'::text)) OR ((cvterm.name)::text = 'direct'::text)) OR ((cvterm.name)::text = 'inverted'::text)) OR ((cvterm.name)::text = 'pericentric'::text)) OR ((cvterm.name)::text = 'paracentric'::text)) OR ((cvterm.name)::text = 'reciprocal'::text)) OR ((cvterm.name)::text = 'insertional'::text)) OR ((cvterm.name)::text = 'free'::text)) OR ((cvterm.name)::text = 'score'::text)) OR ((cvterm.name)::text = 'quality_value'::text)) OR ((cvterm.name)::text = 'organelle_sequence'::text)) OR ((cvterm.name)::text = 'plasmid_location'::text)) OR ((cvterm.name)::text = 'proviral_location'::text)) OR ((cvterm.name)::text = 'macronuclear_sequence'::text)) OR ((cvterm.name)::text = 'micronuclear_sequence'::text)) OR ((cvterm.name)::text = 'mitochondrial_sequence'::text)) OR ((cvterm.name)::text = 'nuclear_sequence'::text)) OR ((cvterm.name)::text = 'nucleomorphic_sequence'::text)) OR ((cvterm.name)::text = 'plastid_sequence'::text)) OR ((cvterm.name)::text = 'mitochondrial_DNA'::text)) OR ((cvterm.name)::text = 'apicoplast_sequence'::text)) OR ((cvterm.name)::text = 'chromoplast_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_sequence'::text)) OR ((cvterm.name)::text = 'cyanelle_sequence'::text)) OR ((cvterm.name)::text = 'leucoplast_sequence'::text)) OR ((cvterm.name)::text = 'proplastid_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_DNA'::text)) OR ((cvterm.name)::text = 'endogenous_retroviral_sequence'::text)) OR ((cvterm.name)::text = 'variant_origin'::text)) OR ((cvterm.name)::text = 'variant_frequency'::text)) OR ((cvterm.name)::text = 'variant_phenotype'::text)) OR ((cvterm.name)::text = 'maternal_variant'::text)) OR ((cvterm.name)::text = 'paternal_variant'::text)) OR ((cvterm.name)::text = 'somatic_variant'::text)) OR ((cvterm.name)::text = 'germline_variant'::text)) OR ((cvterm.name)::text = 'pedigree_specific_variant'::text)) OR ((cvterm.name)::text = 'population_specific_variant'::text)) OR ((cvterm.name)::text = 'de_novo_variant'::text)) OR ((cvterm.name)::text = 'unique_variant'::text)) OR ((cvterm.name)::text = 'rare_variant'::text)) OR ((cvterm.name)::text = 'polymorphic_variant'::text)) OR ((cvterm.name)::text = 'common_variant'::text)) OR ((cvterm.name)::text = 'fixed_variant'::text)) OR ((cvterm.name)::text = 'benign_variant'::text)) OR ((cvterm.name)::text = 'disease_associated_variant'::text)) OR ((cvterm.name)::text = 'disease_causing_variant'::text)) OR ((cvterm.name)::text = 'lethal_variant'::text)) OR ((cvterm.name)::text = 'quantitative_variant'::text)) OR ((cvterm.name)::text = 'sequence_attribute'::text));
- --
- -- Name: sequence_collection; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequence_collection AS
- SELECT feature.feature_id AS sequence_collection_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'kinetoplast'::text) OR ((cvterm.name)::text = 'genome'::text)) OR ((cvterm.name)::text = 'contig_collection'::text)) OR ((cvterm.name)::text = 'peptide_collection'::text)) OR ((cvterm.name)::text = 'variant_collection'::text)) OR ((cvterm.name)::text = 'kinetoplast'::text)) OR ((cvterm.name)::text = 'reference_genome'::text)) OR ((cvterm.name)::text = 'variant_genome'::text)) OR ((cvterm.name)::text = 'chromosomally_aberrant_genome'::text)) OR ((cvterm.name)::text = 'chromosome_variation'::text)) OR ((cvterm.name)::text = 'allele'::text)) OR ((cvterm.name)::text = 'haplotype'::text)) OR ((cvterm.name)::text = 'genotype'::text)) OR ((cvterm.name)::text = 'diplotype'::text)) OR ((cvterm.name)::text = 'assortment_derived_variation'::text)) OR ((cvterm.name)::text = 'chromosome_number_variation'::text)) OR ((cvterm.name)::text = 'chromosome_structure_variation'::text)) OR ((cvterm.name)::text = 'assortment_derived_duplication'::text)) OR ((cvterm.name)::text = 'assortment_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'assortment_derived_deficiency'::text)) OR ((cvterm.name)::text = 'assortment_derived_aneuploid'::text)) OR ((cvterm.name)::text = 'aneuploid'::text)) OR ((cvterm.name)::text = 'polyploid'::text)) OR ((cvterm.name)::text = 'hyperploid'::text)) OR ((cvterm.name)::text = 'hypoploid'::text)) OR ((cvterm.name)::text = 'autopolyploid'::text)) OR ((cvterm.name)::text = 'allopolyploid'::text)) OR ((cvterm.name)::text = 'free_chromosome_arm'::text)) OR ((cvterm.name)::text = 'chromosomal_transposition'::text)) OR ((cvterm.name)::text = 'aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'intrachromosomal_mutation'::text)) OR ((cvterm.name)::text = 'interchromosomal_mutation'::text)) OR ((cvterm.name)::text = 'chromosomal_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome'::text)) OR ((cvterm.name)::text = 'autosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'complex_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'uncharacterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'chromosomal_deletion'::text)) OR ((cvterm.name)::text = 'chromosomal_inversion'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'ring_chromosome'::text)) OR ((cvterm.name)::text = 'chromosome_fission'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_deficiency'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'pericentric_inversion'::text)) OR ((cvterm.name)::text = 'paracentric_inversion'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'translocation_element'::text)) OR ((cvterm.name)::text = 'Robertsonian_fusion'::text)) OR ((cvterm.name)::text = 'reciprocal_chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'cyclic_translocation'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_duplication'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'free_duplication'::text)) OR ((cvterm.name)::text = 'insertional_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'uninverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'inverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'unoriented_insertional_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome_arm'::text)) OR ((cvterm.name)::text = 'homo_compound_chromosome'::text)) OR ((cvterm.name)::text = 'hetero_compound_chromosome'::text)) OR ((cvterm.name)::text = 'dexstrosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'laevosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'partially_characterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'polymorphic_sequence_variant'::text)) OR ((cvterm.name)::text = 'sequence_collection'::text));
- --
- -- Name: sequence_conflict; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequence_conflict AS
- SELECT feature.feature_id AS sequence_conflict_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'contig_collection'::text) OR ((cvterm.name)::text = 'sequence_conflict'::text));
- --
- -- Name: sequence_difference; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequence_difference AS
- SELECT feature.feature_id AS sequence_difference_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'possible_base_call_error'::text) OR ((cvterm.name)::text = 'possible_assembly_error'::text)) OR ((cvterm.name)::text = 'assembly_error_correction'::text)) OR ((cvterm.name)::text = 'base_call_error_correction'::text)) OR ((cvterm.name)::text = 'sequence_difference'::text));
- --
- -- Name: sequence_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequence_feature AS
- SELECT feature.feature_id AS sequence_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'region'::text) OR ((cvterm.name)::text = 'junction'::text)) OR ((cvterm.name)::text = 'sequence_alteration'::text)) OR ((cvterm.name)::text = 'biomaterial_region'::text)) OR ((cvterm.name)::text = 'experimental_feature'::text)) OR ((cvterm.name)::text = 'biological_region'::text)) OR ((cvterm.name)::text = 'topologically_defined_region'::text)) OR ((cvterm.name)::text = 'reagent'::text)) OR ((cvterm.name)::text = 'engineered_region'::text)) OR ((cvterm.name)::text = 'PCR_product'::text)) OR ((cvterm.name)::text = 'clone'::text)) OR ((cvterm.name)::text = 'rescue_region'::text)) OR ((cvterm.name)::text = 'oligo'::text)) OR ((cvterm.name)::text = 'clone_insert'::text)) OR ((cvterm.name)::text = 'cloned_region'::text)) OR ((cvterm.name)::text = 'databank_entry'::text)) OR ((cvterm.name)::text = 'RAPD'::text)) OR ((cvterm.name)::text = 'genomic_clone'::text)) OR ((cvterm.name)::text = 'cDNA_clone'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'validated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'invalidated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'three_prime_RACE_clone'::text)) OR ((cvterm.name)::text = 'chimeric_cDNA_clone'::text)) OR ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'aptamer'::text)) OR ((cvterm.name)::text = 'probe'::text)) OR ((cvterm.name)::text = 'tag'::text)) OR ((cvterm.name)::text = 'ss_oligo'::text)) OR ((cvterm.name)::text = 'ds_oligo'::text)) OR ((cvterm.name)::text = 'DNAzyme'::text)) OR ((cvterm.name)::text = 'synthetic_oligo'::text)) OR ((cvterm.name)::text = 'DNA_aptamer'::text)) OR ((cvterm.name)::text = 'RNA_aptamer'::text)) OR ((cvterm.name)::text = 'microarray_oligo'::text)) OR ((cvterm.name)::text = 'SAGE_tag'::text)) OR ((cvterm.name)::text = 'STS'::text)) OR ((cvterm.name)::text = 'EST'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'five_prime_EST'::text)) OR ((cvterm.name)::text = 'three_prime_EST'::text)) OR ((cvterm.name)::text = 'UST'::text)) OR ((cvterm.name)::text = 'RST'::text)) OR ((cvterm.name)::text = 'three_prime_UST'::text)) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'three_prime_RST'::text)) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'primer'::text)) OR ((cvterm.name)::text = 'sequencing_primer'::text)) OR ((cvterm.name)::text = 'forward_primer'::text)) OR ((cvterm.name)::text = 'reverse_primer'::text)) OR ((cvterm.name)::text = 'ASPE_primer'::text)) OR ((cvterm.name)::text = 'dCAPS_primer'::text)) OR ((cvterm.name)::text = 'RNAi_reagent'::text)) OR ((cvterm.name)::text = 'DNA_constraint_sequence'::text)) OR ((cvterm.name)::text = 'morpholino_oligo'::text)) OR ((cvterm.name)::text = 'PNA_oligo'::text)) OR ((cvterm.name)::text = 'LNA_oligo'::text)) OR ((cvterm.name)::text = 'TNA_oligo'::text)) OR ((cvterm.name)::text = 'GNA_oligo'::text)) OR ((cvterm.name)::text = 'R_GNA_oligo'::text)) OR ((cvterm.name)::text = 'S_GNA_oligo'::text)) OR ((cvterm.name)::text = 'cloned_cDNA_insert'::text)) OR ((cvterm.name)::text = 'cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'BAC_cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_gene'::text)) OR ((cvterm.name)::text = 'engineered_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_region'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_fusion_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'match_part'::text)) OR ((cvterm.name)::text = 'assembly_component'::text)) OR ((cvterm.name)::text = 'conserved_region'::text)) OR ((cvterm.name)::text = 'match'::text)) OR ((cvterm.name)::text = 'remark'::text)) OR ((cvterm.name)::text = 'reading_frame'::text)) OR ((cvterm.name)::text = 'consensus_region'::text)) OR ((cvterm.name)::text = 'low_complexity_region'::text)) OR ((cvterm.name)::text = 'assembly'::text)) OR ((cvterm.name)::text = 'transcribed_fragment'::text)) OR ((cvterm.name)::text = 'transcribed_cluster'::text)) OR ((cvterm.name)::text = 'high_identity_region'::text)) OR ((cvterm.name)::text = 'mathematically_defined_repeat'::text)) OR ((cvterm.name)::text = 'experimentally_defined_binding_region'::text)) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'read'::text)) OR ((cvterm.name)::text = 'restriction_fragment'::text)) OR ((cvterm.name)::text = 'golden_path_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_fragment'::text)) OR ((cvterm.name)::text = 'gap'::text)) OR ((cvterm.name)::text = 'sonicate_fragment'::text)) OR ((cvterm.name)::text = 'paired_end_fragment'::text)) OR ((cvterm.name)::text = 'read_pair'::text)) OR ((cvterm.name)::text = 'contig_read'::text)) OR ((cvterm.name)::text = 'BAC_end'::text)) OR ((cvterm.name)::text = 'dye_terminator_read'::text)) OR ((cvterm.name)::text = 'pyrosequenced_read'::text)) OR ((cvterm.name)::text = 'ligation_based_read'::text)) OR ((cvterm.name)::text = 'polymerase_synthesis_read'::text)) OR ((cvterm.name)::text = 'PAC_end'::text)) OR ((cvterm.name)::text = 'YAC_end'::text)) OR ((cvterm.name)::text = 'clone_end'::text)) OR ((cvterm.name)::text = 'RFLP_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'coding_conserved_region'::text)) OR ((cvterm.name)::text = 'nc_conserved_region'::text)) OR ((cvterm.name)::text = 'RR_tract'::text)) OR ((cvterm.name)::text = 'homologous_region'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_I'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_II'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_III'::text)) OR ((cvterm.name)::text = 'X_element'::text)) OR ((cvterm.name)::text = 'U_box'::text)) OR ((cvterm.name)::text = 'regional_centromere_central_core'::text)) OR ((cvterm.name)::text = 'syntenic_region'::text)) OR ((cvterm.name)::text = 'paralogous_region'::text)) OR ((cvterm.name)::text = 'orthologous_region'::text)) OR ((cvterm.name)::text = 'nucleotide_match'::text)) OR ((cvterm.name)::text = 'protein_match'::text)) OR ((cvterm.name)::text = 'expressed_sequence_match'::text)) OR ((cvterm.name)::text = 'cross_genome_match'::text)) OR ((cvterm.name)::text = 'translated_nucleotide_match'::text)) OR ((cvterm.name)::text = 'primer_match'::text)) OR ((cvterm.name)::text = 'EST_match'::text)) OR ((cvterm.name)::text = 'cDNA_match'::text)) OR ((cvterm.name)::text = 'UST_match'::text)) OR ((cvterm.name)::text = 'RST_match'::text)) OR ((cvterm.name)::text = 'sequence_difference'::text)) OR ((cvterm.name)::text = 'experimental_result_region'::text)) OR ((cvterm.name)::text = 'polypeptide_sequencing_information'::text)) OR ((cvterm.name)::text = 'possible_base_call_error'::text)) OR ((cvterm.name)::text = 'possible_assembly_error'::text)) OR ((cvterm.name)::text = 'assembly_error_correction'::text)) OR ((cvterm.name)::text = 'base_call_error_correction'::text)) OR ((cvterm.name)::text = 'overlapping_feature_set'::text)) OR ((cvterm.name)::text = 'no_output'::text)) OR ((cvterm.name)::text = 'overlapping_EST_set'::text)) OR ((cvterm.name)::text = 'non_adjacent_residues'::text)) OR ((cvterm.name)::text = 'non_terminal_residue'::text)) OR ((cvterm.name)::text = 'sequence_conflict'::text)) OR ((cvterm.name)::text = 'sequence_uncertainty'::text)) OR ((cvterm.name)::text = 'contig_collection'::text)) OR ((cvterm.name)::text = 'ORF'::text)) OR ((cvterm.name)::text = 'blocked_reading_frame'::text)) OR ((cvterm.name)::text = 'mini_gene'::text)) OR ((cvterm.name)::text = 'rescue_mini_gene'::text)) OR ((cvterm.name)::text = 'consensus_mRNA'::text)) OR ((cvterm.name)::text = 'sequence_assembly'::text)) OR ((cvterm.name)::text = 'fragment_assembly'::text)) OR ((cvterm.name)::text = 'supercontig'::text)) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'tiling_path'::text)) OR ((cvterm.name)::text = 'virtual_sequence'::text)) OR ((cvterm.name)::text = 'golden_path'::text)) OR ((cvterm.name)::text = 'ultracontig'::text)) OR ((cvterm.name)::text = 'expressed_sequence_assembly'::text)) OR ((cvterm.name)::text = 'fingerprint_map'::text)) OR ((cvterm.name)::text = 'STS_map'::text)) OR ((cvterm.name)::text = 'RH_map'::text)) OR ((cvterm.name)::text = 'unigene_cluster'::text)) OR ((cvterm.name)::text = 'CHiP_seq_region'::text)) OR ((cvterm.name)::text = 'sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'linkage_group'::text)) OR ((cvterm.name)::text = 'polypeptide'::text)) OR ((cvterm.name)::text = 'deletion'::text)) OR ((cvterm.name)::text = 'origin_of_replication'::text)) OR ((cvterm.name)::text = 'recombination_feature'::text)) OR ((cvterm.name)::text = 'CpG_island'::text)) OR ((cvterm.name)::text = 'pseudogene'::text)) OR ((cvterm.name)::text = 'binding_site'::text)) OR ((cvterm.name)::text = 'pseudogenic_region'::text)) OR ((cvterm.name)::text = 'cap'::text)) OR ((cvterm.name)::text = 'intergenic_region'::text)) OR ((cvterm.name)::text = 'oligo_U_tail'::text)) OR ((cvterm.name)::text = 'polyA_sequence'::text)) OR ((cvterm.name)::text = 'repeat_region'::text)) OR ((cvterm.name)::text = 'insertion'::text)) OR ((cvterm.name)::text = 'gene'::text)) OR ((cvterm.name)::text = 'repeat_unit'::text)) OR ((cvterm.name)::text = 'QTL'::text)) OR ((cvterm.name)::text = 'chromosome_part'::text)) OR ((cvterm.name)::text = 'gene_member_region'::text)) OR ((cvterm.name)::text = 'transcript_region'::text)) OR ((cvterm.name)::text = 'polypeptide_region'::text)) OR ((cvterm.name)::text = 'gene_component_region'::text)) OR ((cvterm.name)::text = 'mobile_genetic_element'::text)) OR ((cvterm.name)::text = 'replicon'::text)) OR ((cvterm.name)::text = 'base'::text)) OR ((cvterm.name)::text = 'amino_acid'::text)) OR ((cvterm.name)::text = 'genetic_marker'::text)) OR ((cvterm.name)::text = 'sequence_motif'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_recognition_site'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_single_strand_overhang'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_region'::text)) OR ((cvterm.name)::text = 'open_chromatin_region'::text)) OR ((cvterm.name)::text = 'gene_group'::text)) OR ((cvterm.name)::text = 'substitution'::text)) OR ((cvterm.name)::text = 'inversion'::text)) OR ((cvterm.name)::text = 'retron'::text)) OR ((cvterm.name)::text = 'G_quartet'::text)) OR ((cvterm.name)::text = 'base_pair'::text)) OR ((cvterm.name)::text = 'RNA_sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'DNA_sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'pseudoknot'::text)) OR ((cvterm.name)::text = 'WC_base_pair'::text)) OR ((cvterm.name)::text = 'sugar_edge_base_pair'::text)) OR ((cvterm.name)::text = 'Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'reverse_Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'wobble_base_pair'::text)) OR ((cvterm.name)::text = 'stem_loop'::text)) OR ((cvterm.name)::text = 'tetraloop'::text)) OR ((cvterm.name)::text = 'i_motif'::text)) OR ((cvterm.name)::text = 'recoding_pseudoknot'::text)) OR ((cvterm.name)::text = 'H_pseudoknot'::text)) OR ((cvterm.name)::text = 'D_loop'::text)) OR ((cvterm.name)::text = 'ARS'::text)) OR ((cvterm.name)::text = 'oriT'::text)) OR ((cvterm.name)::text = 'amplification_origin'::text)) OR ((cvterm.name)::text = 'oriV'::text)) OR ((cvterm.name)::text = 'oriC'::text)) OR ((cvterm.name)::text = 'recombination_hotspot'::text)) OR ((cvterm.name)::text = 'haplotype_block'::text)) OR ((cvterm.name)::text = 'sequence_rearrangement_feature'::text)) OR ((cvterm.name)::text = 'iDNA'::text)) OR ((cvterm.name)::text = 'specific_recombination_site'::text)) OR ((cvterm.name)::text = 'chromosome_breakage_sequence'::text)) OR ((cvterm.name)::text = 'internal_eliminated_sequence'::text)) OR ((cvterm.name)::text = 'macronucleus_destined_segment'::text)) OR ((cvterm.name)::text = 'recombination_feature_of_rearranged_gene'::text)) OR ((cvterm.name)::text = 'site_specific_recombination_target_region'::text)) OR ((cvterm.name)::text = 'recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text)) OR ((cvterm.name)::text = 'D_gene'::text)) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'three_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'VD_gene'::text)) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'integration_excision_site'::text)) OR ((cvterm.name)::text = 'resolution_site'::text)) OR ((cvterm.name)::text = 'inversion_site'::text)) OR ((cvterm.name)::text = 'inversion_site_part'::text)) OR ((cvterm.name)::text = 'attI_site'::text)) OR ((cvterm.name)::text = 'attP_site'::text)) OR ((cvterm.name)::text = 'attB_site'::text)) OR ((cvterm.name)::text = 'attL_site'::text)) OR ((cvterm.name)::text = 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((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'gamma_turn_classic'::text)) OR ((cvterm.name)::text = 'gamma_turn_inverse'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'coiled_coil'::text)) OR ((cvterm.name)::text = 'helix_turn_helix'::text)) OR ((cvterm.name)::text = 'natural_variant_site'::text)) OR ((cvterm.name)::text = 'mutated_variant_site'::text)) OR ((cvterm.name)::text = 'alternate_sequence_site'::text)) OR ((cvterm.name)::text = 'signal_peptide'::text)) OR ((cvterm.name)::text = 'transit_peptide'::text)) OR ((cvterm.name)::text = 'nuclear_localization_signal'::text)) OR ((cvterm.name)::text = 'endosomal_localization_signal'::text)) OR ((cvterm.name)::text = 'lysosomal_localization_signal'::text)) OR ((cvterm.name)::text = 'nuclear_export_signal'::text)) OR ((cvterm.name)::text = 'nuclear_rim_localization_signal'::text)) OR ((cvterm.name)::text = 'cleaved_initiator_methionine'::text)) OR ((cvterm.name)::text = 'intein'::text)) OR ((cvterm.name)::text = 'propeptide_cleavage_site'::text)) OR ((cvterm.name)::text = 'propeptide'::text)) OR ((cvterm.name)::text = 'cleaved_for_gpi_anchor_region'::text)) OR ((cvterm.name)::text = 'lipoprotein_signal_peptide'::text)) OR ((cvterm.name)::text = 'n_terminal_region'::text)) OR ((cvterm.name)::text = 'c_terminal_region'::text)) OR ((cvterm.name)::text = 'central_hydrophobic_region_of_signal_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_domain'::text)) OR ((cvterm.name)::text = 'polypeptide_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_repeat'::text)) OR ((cvterm.name)::text = 'biochemical_region_of_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_conserved_motif'::text)) OR ((cvterm.name)::text = 'post_translationally_modified_region'::text)) OR ((cvterm.name)::text = 'conformational_switch'::text)) OR ((cvterm.name)::text = 'molecular_contact_region'::text)) OR ((cvterm.name)::text = 'polypeptide_binding_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_catalytic_motif'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text)) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'non_transcribed_region'::text)) OR ((cvterm.name)::text = 'gene_fragment'::text)) OR ((cvterm.name)::text = 'TSS_region'::text)) OR ((cvterm.name)::text = 'gene_segment'::text)) OR ((cvterm.name)::text = 'pseudogenic_gene_segment'::text)) OR ((cvterm.name)::text = 'mobile_intron'::text)) OR ((cvterm.name)::text = 'extrachromosomal_mobile_genetic_element'::text)) OR ((cvterm.name)::text = 'integrated_mobile_genetic_element'::text)) OR ((cvterm.name)::text = 'natural_transposable_element'::text)) OR ((cvterm.name)::text = 'viral_sequence'::text)) OR ((cvterm.name)::text = 'natural_plasmid'::text)) OR ((cvterm.name)::text = 'phage_sequence'::text)) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'transposable_element'::text)) OR ((cvterm.name)::text = 'proviral_region'::text)) OR ((cvterm.name)::text = 'integron'::text)) OR ((cvterm.name)::text = 'genomic_island'::text)) OR ((cvterm.name)::text = 'integrated_plasmid'::text)) OR ((cvterm.name)::text = 'cointegrated_plasmid'::text)) OR ((cvterm.name)::text = 'retrotransposon'::text)) OR ((cvterm.name)::text = 'DNA_transposon'::text)) OR ((cvterm.name)::text = 'foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'transgenic_transposable_element'::text)) OR ((cvterm.name)::text = 'natural_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'nested_transposon'::text)) OR ((cvterm.name)::text = 'LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'LINE_element'::text)) OR ((cvterm.name)::text = 'SINE_element'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat_element'::text)) OR ((cvterm.name)::text = 'foldback_element'::text)) OR ((cvterm.name)::text = 'conjugative_transposon'::text)) OR ((cvterm.name)::text = 'helitron'::text)) OR ((cvterm.name)::text = 'p_element'::text)) OR ((cvterm.name)::text = 'MITE'::text)) OR ((cvterm.name)::text = 'insertion_sequence'::text)) OR ((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'prophage'::text)) OR ((cvterm.name)::text = 'pathogenic_island'::text)) OR ((cvterm.name)::text = 'metabolic_island'::text)) OR ((cvterm.name)::text = 'adaptive_island'::text)) OR ((cvterm.name)::text = 'symbiosis_island'::text)) OR ((cvterm.name)::text = 'cryptic_prophage'::text)) OR ((cvterm.name)::text = 'defective_conjugative_transposon'::text)) OR ((cvterm.name)::text = 'plasmid'::text)) OR ((cvterm.name)::text = 'chromosome'::text)) OR ((cvterm.name)::text = 'vector_replicon'::text)) OR ((cvterm.name)::text = 'maxicircle'::text)) OR ((cvterm.name)::text = 'minicircle'::text)) OR ((cvterm.name)::text = 'viral_sequence'::text)) OR ((cvterm.name)::text = 'engineered_plasmid'::text)) OR ((cvterm.name)::text = 'episome'::text)) OR ((cvterm.name)::text = 'natural_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'mitochondrial_chromosome'::text)) OR ((cvterm.name)::text = 'chloroplast_chromosome'::text)) OR ((cvterm.name)::text = 'chromoplast_chromosome'::text)) OR ((cvterm.name)::text = 'cyanelle_chromosome'::text)) OR ((cvterm.name)::text = 'leucoplast_chromosome'::text)) OR ((cvterm.name)::text = 'macronuclear_chromosome'::text)) OR ((cvterm.name)::text = 'micronuclear_chromosome'::text)) OR ((cvterm.name)::text = 'nuclear_chromosome'::text)) OR ((cvterm.name)::text = 'nucleomorphic_chromosome'::text)) OR ((cvterm.name)::text = 'DNA_chromosome'::text)) OR ((cvterm.name)::text = 'RNA_chromosome'::text)) OR ((cvterm.name)::text = 'apicoplast_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'YAC'::text)) OR ((cvterm.name)::text = 'BAC'::text)) OR ((cvterm.name)::text = 'PAC'::text)) OR ((cvterm.name)::text = 'cosmid'::text)) OR ((cvterm.name)::text = 'phagemid'::text)) OR ((cvterm.name)::text = 'fosmid'::text)) OR ((cvterm.name)::text = 'lambda_vector'::text)) OR ((cvterm.name)::text = 'plasmid_vector'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'phage_sequence'::text)) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'modified_RNA_base_feature'::text)) OR ((cvterm.name)::text = 'inosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanine'::text)) OR ((cvterm.name)::text = 'ribothymidine'::text)) OR ((cvterm.name)::text = 'modified_adenosine'::text)) OR ((cvterm.name)::text = 'modified_cytidine'::text)) OR ((cvterm.name)::text = 'modified_guanosine'::text)) OR ((cvterm.name)::text = 'modified_uridine'::text)) OR ((cvterm.name)::text = 'modified_inosine'::text)) OR ((cvterm.name)::text = 'methylinosine'::text)) OR ((cvterm.name)::text = 'one_methylinosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylinosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylinosine'::text)) OR ((cvterm.name)::text = 'one_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'N6_glycinylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_threonyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyl_N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_hydroxynorvalylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosyladenosine_phosphate'::text)) OR ((cvterm.name)::text = 'N6_N6_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_2_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_N6_2_prime_O_trimethyladenosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_acetyladenosine'::text)) OR ((cvterm.name)::text = 'three_methylcytidine'::text)) OR ((cvterm.name)::text = 'five_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_thiocytidine'::text)) OR ((cvterm.name)::text = 'N4_acetylcytidine'::text)) OR ((cvterm.name)::text = 'five_formylcytidine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'N4_acetyl_2_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'lysidine'::text)) OR ((cvterm.name)::text = 'N4_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_2_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'five_hydroxymethylcytidine'::text)) OR ((cvterm.name)::text = 'five_formyl_two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_N4_2_prime_O_trimethylcytidine'::text)) OR ((cvterm.name)::text = 'seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'one_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_methylguanosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_2_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_2_prime_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosylguanosine_phosphate'::text)) OR ((cvterm.name)::text = 'wybutosine'::text)) OR ((cvterm.name)::text = 'peroxywybutosine'::text)) OR ((cvterm.name)::text = 'hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'undermodified_hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'wyosine'::text)) OR ((cvterm.name)::text = 'methylwyosine'::text)) OR ((cvterm.name)::text = 'N2_7_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_7_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'four_demethylwyosine'::text)) OR ((cvterm.name)::text = 'isowyosine'::text)) OR ((cvterm.name)::text = 'N2_7_2prirme_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'queuosine'::text)) OR ((cvterm.name)::text = 'epoxyqueuosine'::text)) OR ((cvterm.name)::text = 'galactosyl_queuosine'::text)) OR ((cvterm.name)::text = 'mannosyl_queuosine'::text)) OR ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'archaeosine'::text)) OR ((cvterm.name)::text = 'dihydrouridine'::text)) OR ((cvterm.name)::text = 'pseudouridine'::text)) OR ((cvterm.name)::text = 'five_methyluridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'one_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_thiouridine'::text)) OR ((cvterm.name)::text = 'four_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methyl_2_thiouridine'::text)) OR ((cvterm.name)::text = 'two_thio_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'three_three_amino_three_carboxypropyl_uridine'::text)) OR ((cvterm.name)::text = 'five_hydroxyuridine'::text)) OR ((cvterm.name)::text = 'five_methoxyuridine'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_aminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_selenouridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'three_methyluridine'::text)) OR ((cvterm.name)::text = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethyluridine'::text)) OR ((cvterm.name)::text = 'three_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'five_methyldihydrouridine'::text)) OR ((cvterm.name)::text = 'three_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyluridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'catalytic_residue'::text)) OR ((cvterm.name)::text = 'modified_amino_acid_feature'::text)) OR ((cvterm.name)::text = 'alanine'::text)) OR ((cvterm.name)::text = 'valine'::text)) OR ((cvterm.name)::text = 'leucine'::text)) OR ((cvterm.name)::text = 'isoleucine'::text)) OR ((cvterm.name)::text = 'proline'::text)) OR ((cvterm.name)::text = 'tryptophan'::text)) OR ((cvterm.name)::text = 'phenylalanine'::text)) OR ((cvterm.name)::text = 'methionine'::text)) OR ((cvterm.name)::text = 'glycine'::text)) OR ((cvterm.name)::text = 'serine'::text)) OR ((cvterm.name)::text = 'threonine'::text)) OR ((cvterm.name)::text = 'tyrosine'::text)) OR ((cvterm.name)::text = 'cysteine'::text)) OR ((cvterm.name)::text = 'glutamine'::text)) OR ((cvterm.name)::text = 'asparagine'::text)) OR ((cvterm.name)::text = 'lysine'::text)) OR ((cvterm.name)::text = 'arginine'::text)) OR ((cvterm.name)::text = 'histidine'::text)) OR ((cvterm.name)::text = 'aspartic_acid'::text)) OR ((cvterm.name)::text = 'glutamic_acid'::text)) OR ((cvterm.name)::text = 'selenocysteine'::text)) OR ((cvterm.name)::text = 'pyrrolysine'::text)) OR ((cvterm.name)::text = 'modified_glycine'::text)) OR ((cvterm.name)::text = 'modified_L_alanine'::text)) OR ((cvterm.name)::text = 'modified_L_asparagine'::text)) OR ((cvterm.name)::text = 'modified_L_aspartic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_cysteine'::text)) OR ((cvterm.name)::text = 'modified_L_glutamic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_threonine'::text)) OR ((cvterm.name)::text = 'modified_L_tryptophan'::text)) OR ((cvterm.name)::text = 'modified_L_glutamine'::text)) OR ((cvterm.name)::text = 'modified_L_methionine'::text)) OR ((cvterm.name)::text = 'modified_L_isoleucine'::text)) OR ((cvterm.name)::text = 'modified_L_phenylalanine'::text)) OR ((cvterm.name)::text = 'modified_L_histidine'::text)) OR ((cvterm.name)::text = 'modified_L_serine'::text)) OR ((cvterm.name)::text = 'modified_L_lysine'::text)) OR ((cvterm.name)::text = 'modified_L_leucine'::text)) OR ((cvterm.name)::text = 'modified_L_selenocysteine'::text)) OR ((cvterm.name)::text = 'modified_L_valine'::text)) OR ((cvterm.name)::text = 'modified_L_proline'::text)) OR ((cvterm.name)::text = 'modified_L_tyrosine'::text)) OR ((cvterm.name)::text = 'modified_L_arginine'::text)) OR ((cvterm.name)::text = 'heritable_phenotypic_marker'::text)) OR ((cvterm.name)::text = 'DArT_marker'::text)) OR ((cvterm.name)::text = 'nucleotide_motif'::text)) OR ((cvterm.name)::text = 'DNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_motif'::text)) OR ((cvterm.name)::text = 'PSE_motif'::text)) OR ((cvterm.name)::text = 'CAAT_signal'::text)) OR ((cvterm.name)::text = 'minus_10_signal'::text)) OR ((cvterm.name)::text = 'minus_35_signal'::text)) OR ((cvterm.name)::text = 'DRE_motif'::text)) OR ((cvterm.name)::text = 'E_box_motif'::text)) OR ((cvterm.name)::text = 'INR1_motif'::text)) OR ((cvterm.name)::text = 'GAGA_motif'::text)) OR ((cvterm.name)::text = 'octamer_motif'::text)) OR ((cvterm.name)::text = 'retinoic_acid_responsive_element'::text)) OR ((cvterm.name)::text = 'promoter_element'::text)) OR ((cvterm.name)::text = 'DCE_SI'::text)) OR ((cvterm.name)::text = 'DCE_SII'::text)) OR ((cvterm.name)::text = 'DCE_SIII'::text)) OR ((cvterm.name)::text = 'minus_12_signal'::text)) OR ((cvterm.name)::text = 'minus_24_signal'::text)) OR ((cvterm.name)::text = 'GC_rich_promoter_region'::text)) OR ((cvterm.name)::text = 'DMv4_motif'::text)) OR ((cvterm.name)::text = 'DMv5_motif'::text)) OR ((cvterm.name)::text = 'DMv3_motif'::text)) OR ((cvterm.name)::text = 'DMv2_motif'::text)) OR ((cvterm.name)::text = 'DPE1_motif'::text)) OR ((cvterm.name)::text = 'DMv1_motif'::text)) OR ((cvterm.name)::text = 'NDM2_motif'::text)) OR ((cvterm.name)::text = 'NDM3_motif'::text)) OR ((cvterm.name)::text = 'core_promoter_element'::text)) OR ((cvterm.name)::text = 'regulatory_promoter_element'::text)) OR ((cvterm.name)::text = 'INR_motif'::text)) OR ((cvterm.name)::text = 'DPE_motif'::text)) OR ((cvterm.name)::text = 'BREu_motif'::text)) OR ((cvterm.name)::text = 'TATA_box'::text)) OR ((cvterm.name)::text = 'A_box'::text)) OR ((cvterm.name)::text = 'B_box'::text)) OR ((cvterm.name)::text = 'C_box'::text)) OR ((cvterm.name)::text = 'MTE'::text)) OR ((cvterm.name)::text = 'BREd_motif'::text)) OR ((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'proximal_promoter_element'::text)) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'A_minor_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_junction_loop'::text)) OR ((cvterm.name)::text = 'hammerhead_ribozyme'::text)) OR ((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'K_turn_RNA_motif'::text)) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_hook_turn'::text)) OR ((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'sticky_end_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'modified_base'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_gene'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'methylated_base_feature'::text)) OR ((cvterm.name)::text = 'methylated_C'::text)) OR ((cvterm.name)::text = 'methylated_A'::text)) OR ((cvterm.name)::text = 'gene_rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'paternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'allelically_excluded_gene'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'operon'::text)) OR ((cvterm.name)::text = 'mating_type_region'::text)) OR ((cvterm.name)::text = 'gene_array'::text)) OR ((cvterm.name)::text = 'gene_subarray'::text)) OR ((cvterm.name)::text = 'gene_cassette_array'::text)) OR ((cvterm.name)::text = 'regulon'::text)) OR ((cvterm.name)::text = 'sequence_length_variation'::text)) OR ((cvterm.name)::text = 'MNP'::text)) OR ((cvterm.name)::text = 'SNV'::text)) OR ((cvterm.name)::text = 'complex_substitution'::text)) OR ((cvterm.name)::text = 'simple_sequence_length_variation'::text)) OR ((cvterm.name)::text = 'SNP'::text)) OR ((cvterm.name)::text = 'point_mutation'::text)) OR ((cvterm.name)::text = 'transition'::text)) OR ((cvterm.name)::text = 'transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'flanking_region'::text)) OR ((cvterm.name)::text = 'repeat_component'::text)) OR ((cvterm.name)::text = 'transposable_element_flanking_region'::text)) OR ((cvterm.name)::text = 'five_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'three_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon_polymeric_tract'::text)) OR ((cvterm.name)::text = 'LTR_component'::text)) OR ((cvterm.name)::text = 'repeat_fragment'::text)) OR ((cvterm.name)::text = 'transposon_fragment'::text)) OR ((cvterm.name)::text = 'U5_LTR_region'::text)) OR ((cvterm.name)::text = 'R_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_LTR_region'::text)) OR ((cvterm.name)::text = 'three_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'five_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'clone_insert_end'::text)) OR ((cvterm.name)::text = 'clone_insert_start'::text)) OR ((cvterm.name)::text = 'exon_junction'::text)) OR ((cvterm.name)::text = 'insertion_site'::text)) OR ((cvterm.name)::text = 'polyA_site'::text)) OR ((cvterm.name)::text = 'deletion_junction'::text)) OR ((cvterm.name)::text = 'chromosome_breakpoint'::text)) OR ((cvterm.name)::text = 'splice_junction'::text)) OR ((cvterm.name)::text = 'trans_splice_junction'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_cleavage_junction'::text)) OR ((cvterm.name)::text = 'transposable_element_insertion_site'::text)) OR ((cvterm.name)::text = 'inversion_breakpoint'::text)) OR ((cvterm.name)::text = 'translocation_breakpoint'::text)) OR ((cvterm.name)::text = 'insertion_breakpoint'::text)) OR ((cvterm.name)::text = 'deletion_breakpoint'::text)) OR ((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_junction'::text)) OR ((cvterm.name)::text = 'single_strand_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'five_prime_restriction_enzyme_junction'::text)) OR ((cvterm.name)::text = 'three_prime_restriction_enzyme_junction'::text)) OR ((cvterm.name)::text = 'deletion'::text)) OR ((cvterm.name)::text = 'translocation'::text)) OR ((cvterm.name)::text = 'insertion'::text)) OR ((cvterm.name)::text = 'copy_number_variation'::text)) OR ((cvterm.name)::text = 'UPD'::text)) OR ((cvterm.name)::text = 'structural_alteration'::text)) OR ((cvterm.name)::text = 'substitution'::text)) OR ((cvterm.name)::text = 'indel'::text)) OR ((cvterm.name)::text = 'inversion'::text)) OR ((cvterm.name)::text = 'transgenic_insertion'::text)) OR ((cvterm.name)::text = 'duplication'::text)) OR ((cvterm.name)::text = 'tandem_duplication'::text)) OR ((cvterm.name)::text = 'direct_tandem_duplication'::text)) OR ((cvterm.name)::text = 'inverted_tandem_duplication'::text)) OR ((cvterm.name)::text = 'copy_number_gain'::text)) OR ((cvterm.name)::text = 'copy_number_loss'::text)) OR ((cvterm.name)::text = 'maternal_uniparental_disomy'::text)) OR ((cvterm.name)::text = 'paternal_uniparental_disomy'::text)) OR ((cvterm.name)::text = 'complex_structural_alteration'::text)) OR ((cvterm.name)::text = 'sequence_length_variation'::text)) OR ((cvterm.name)::text = 'MNP'::text)) OR ((cvterm.name)::text = 'SNV'::text)) OR ((cvterm.name)::text = 'complex_substitution'::text)) OR ((cvterm.name)::text = 'simple_sequence_length_variation'::text)) OR ((cvterm.name)::text = 'SNP'::text)) OR ((cvterm.name)::text = 'point_mutation'::text)) OR ((cvterm.name)::text = 'transition'::text)) OR ((cvterm.name)::text = 'transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'sequence_feature'::text));
- --
- -- Name: sequence_length_variation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequence_length_variation AS
- SELECT feature.feature_id AS sequence_length_variation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'simple_sequence_length_variation'::text) OR ((cvterm.name)::text = 'sequence_length_variation'::text));
- --
- -- Name: sequence_location; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequence_location AS
- SELECT feature.feature_id AS sequence_location_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((cvterm.name)::text = 'organelle_sequence'::text) OR ((cvterm.name)::text = 'plasmid_location'::text)) OR ((cvterm.name)::text = 'proviral_location'::text)) OR ((cvterm.name)::text = 'macronuclear_sequence'::text)) OR ((cvterm.name)::text = 'micronuclear_sequence'::text)) OR ((cvterm.name)::text = 'mitochondrial_sequence'::text)) OR ((cvterm.name)::text = 'nuclear_sequence'::text)) OR ((cvterm.name)::text = 'nucleomorphic_sequence'::text)) OR ((cvterm.name)::text = 'plastid_sequence'::text)) OR ((cvterm.name)::text = 'mitochondrial_DNA'::text)) OR ((cvterm.name)::text = 'apicoplast_sequence'::text)) OR ((cvterm.name)::text = 'chromoplast_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_sequence'::text)) OR ((cvterm.name)::text = 'cyanelle_sequence'::text)) OR ((cvterm.name)::text = 'leucoplast_sequence'::text)) OR ((cvterm.name)::text = 'proplastid_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_DNA'::text)) OR ((cvterm.name)::text = 'endogenous_retroviral_sequence'::text)) OR ((cvterm.name)::text = 'sequence_location'::text));
- --
- -- Name: sequence_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequence_motif AS
- SELECT feature.feature_id AS sequence_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'nucleotide_motif'::text) OR ((cvterm.name)::text = 'DNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_motif'::text)) OR ((cvterm.name)::text = 'PSE_motif'::text)) OR ((cvterm.name)::text = 'CAAT_signal'::text)) OR ((cvterm.name)::text = 'minus_10_signal'::text)) OR ((cvterm.name)::text = 'minus_35_signal'::text)) OR ((cvterm.name)::text = 'DRE_motif'::text)) OR ((cvterm.name)::text = 'E_box_motif'::text)) OR ((cvterm.name)::text = 'INR1_motif'::text)) OR ((cvterm.name)::text = 'GAGA_motif'::text)) OR ((cvterm.name)::text = 'octamer_motif'::text)) OR ((cvterm.name)::text = 'retinoic_acid_responsive_element'::text)) OR ((cvterm.name)::text = 'promoter_element'::text)) OR ((cvterm.name)::text = 'DCE_SI'::text)) OR ((cvterm.name)::text = 'DCE_SII'::text)) OR ((cvterm.name)::text = 'DCE_SIII'::text)) OR ((cvterm.name)::text = 'minus_12_signal'::text)) OR ((cvterm.name)::text = 'minus_24_signal'::text)) OR ((cvterm.name)::text = 'GC_rich_promoter_region'::text)) OR ((cvterm.name)::text = 'DMv4_motif'::text)) OR ((cvterm.name)::text = 'DMv5_motif'::text)) OR ((cvterm.name)::text = 'DMv3_motif'::text)) OR ((cvterm.name)::text = 'DMv2_motif'::text)) OR ((cvterm.name)::text = 'DPE1_motif'::text)) OR ((cvterm.name)::text = 'DMv1_motif'::text)) OR ((cvterm.name)::text = 'NDM2_motif'::text)) OR ((cvterm.name)::text = 'NDM3_motif'::text)) OR ((cvterm.name)::text = 'core_promoter_element'::text)) OR ((cvterm.name)::text = 'regulatory_promoter_element'::text)) OR ((cvterm.name)::text = 'INR_motif'::text)) OR ((cvterm.name)::text = 'DPE_motif'::text)) OR ((cvterm.name)::text = 'BREu_motif'::text)) OR ((cvterm.name)::text = 'TATA_box'::text)) OR ((cvterm.name)::text = 'A_box'::text)) OR ((cvterm.name)::text = 'B_box'::text)) OR ((cvterm.name)::text = 'C_box'::text)) OR ((cvterm.name)::text = 'MTE'::text)) OR ((cvterm.name)::text = 'BREd_motif'::text)) OR ((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'proximal_promoter_element'::text)) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'A_minor_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_junction_loop'::text)) OR ((cvterm.name)::text = 'hammerhead_ribozyme'::text)) OR ((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'K_turn_RNA_motif'::text)) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_hook_turn'::text)) OR ((cvterm.name)::text = 'sequence_motif'::text));
- --
- -- Name: sequence_rearrangement_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequence_rearrangement_feature AS
- SELECT feature.feature_id AS sequence_rearrangement_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'specific_recombination_site'::text) OR ((cvterm.name)::text = 'chromosome_breakage_sequence'::text)) OR ((cvterm.name)::text = 'internal_eliminated_sequence'::text)) OR ((cvterm.name)::text = 'macronucleus_destined_segment'::text)) OR ((cvterm.name)::text = 'recombination_feature_of_rearranged_gene'::text)) OR ((cvterm.name)::text = 'site_specific_recombination_target_region'::text)) OR ((cvterm.name)::text = 'recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text)) OR ((cvterm.name)::text = 'D_gene'::text)) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'three_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'VD_gene'::text)) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'integration_excision_site'::text)) OR ((cvterm.name)::text = 'resolution_site'::text)) OR ((cvterm.name)::text = 'inversion_site'::text)) OR ((cvterm.name)::text = 'inversion_site_part'::text)) OR ((cvterm.name)::text = 'attI_site'::text)) OR ((cvterm.name)::text = 'attP_site'::text)) OR ((cvterm.name)::text = 'attB_site'::text)) OR ((cvterm.name)::text = 'attL_site'::text)) OR ((cvterm.name)::text = 'attR_site'::text)) OR ((cvterm.name)::text = 'attC_site'::text)) OR ((cvterm.name)::text = 'attCtn_site'::text)) OR ((cvterm.name)::text = 'loxP_site'::text)) OR ((cvterm.name)::text = 'dif_site'::text)) OR ((cvterm.name)::text = 'FRT_site'::text)) OR ((cvterm.name)::text = 'IRLinv_site'::text)) OR ((cvterm.name)::text = 'IRRinv_site'::text)) OR ((cvterm.name)::text = 'sequence_rearrangement_feature'::text));
- --
- -- Name: sequence_secondary_structure; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequence_secondary_structure AS
- SELECT feature.feature_id AS sequence_secondary_structure_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((cvterm.name)::text = 'G_quartet'::text) OR ((cvterm.name)::text = 'base_pair'::text)) OR ((cvterm.name)::text = 'RNA_sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'DNA_sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'pseudoknot'::text)) OR ((cvterm.name)::text = 'WC_base_pair'::text)) OR ((cvterm.name)::text = 'sugar_edge_base_pair'::text)) OR ((cvterm.name)::text = 'Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'reverse_Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'wobble_base_pair'::text)) OR ((cvterm.name)::text = 'stem_loop'::text)) OR ((cvterm.name)::text = 'tetraloop'::text)) OR ((cvterm.name)::text = 'i_motif'::text)) OR ((cvterm.name)::text = 'recoding_pseudoknot'::text)) OR ((cvterm.name)::text = 'H_pseudoknot'::text)) OR ((cvterm.name)::text = 'sequence_secondary_structure'::text));
- --
- -- Name: sequence_uncertainty; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequence_uncertainty AS
- SELECT feature.feature_id AS sequence_uncertainty_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'sequence_uncertainty'::text);
- --
- -- Name: sequence_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequence_variant AS
- SELECT feature.feature_id AS sequence_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'functional_variant'::text) OR ((cvterm.name)::text = 'structural_variant'::text)) OR ((cvterm.name)::text = 'loss_of_heterozygosity'::text)) OR ((cvterm.name)::text = 'transcript_function_variant'::text)) OR ((cvterm.name)::text = 'translational_product_function_variant'::text)) OR ((cvterm.name)::text = 'level_of_transcript_variant'::text)) OR ((cvterm.name)::text = 'transcript_processing_variant'::text)) OR ((cvterm.name)::text = 'transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'transcription_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcript_level_variant'::text)) OR ((cvterm.name)::text = 'increased_transcript_level_variant'::text)) OR ((cvterm.name)::text = 'editing_variant'::text)) OR ((cvterm.name)::text = 'polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'increased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'decreased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'increased_transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'rate_of_transcription_variant'::text)) OR ((cvterm.name)::text = 'increased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'translational_product_level_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_function_variant'::text)) OR ((cvterm.name)::text = 'decreased_translational_product_level'::text)) OR ((cvterm.name)::text = 'increased_translational_product_level'::text)) OR ((cvterm.name)::text = 'polypeptide_gain_of_function_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_localization_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_loss_of_function_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_post_translational_processing_variant'::text)) OR ((cvterm.name)::text = 'inactive_ligand_binding_site'::text)) OR ((cvterm.name)::text = 'polypeptide_partial_loss_of_function'::text)) OR ((cvterm.name)::text = 'inactive_catalytic_site'::text)) OR ((cvterm.name)::text = 'silent_mutation'::text)) OR ((cvterm.name)::text = 'copy_number_change'::text)) OR ((cvterm.name)::text = 'gene_variant'::text)) OR ((cvterm.name)::text = 'regulatory_region_variant'::text)) OR ((cvterm.name)::text = 'intergenic_variant'::text)) OR ((cvterm.name)::text = 'upstream_gene_variant'::text)) OR ((cvterm.name)::text = 'downstream_gene_variant'::text)) OR ((cvterm.name)::text = 'gene_fusion'::text)) OR ((cvterm.name)::text = 'splicing_variant'::text)) OR ((cvterm.name)::text = 'transcript_variant'::text)) OR ((cvterm.name)::text = 'translational_product_structure_variant'::text)) OR ((cvterm.name)::text = 'cryptic_splice_site_variant'::text)) OR ((cvterm.name)::text = 'exon_loss'::text)) OR ((cvterm.name)::text = 'intron_gain'::text)) OR ((cvterm.name)::text = 'splice_region_variant'::text)) OR ((cvterm.name)::text = 'cryptic_splice_acceptor'::text)) OR ((cvterm.name)::text = 'cryptic_splice_donor'::text)) OR ((cvterm.name)::text = 'complex_change_in_transcript'::text)) OR ((cvterm.name)::text = 'transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'nc_transcript_variant'::text)) OR ((cvterm.name)::text = 'NMD_transcript_variant'::text)) OR ((cvterm.name)::text = 'UTR_variant'::text)) OR ((cvterm.name)::text = 'intron_variant'::text)) OR ((cvterm.name)::text = 'exon_variant'::text)) OR ((cvterm.name)::text = 'compensatory_transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'mature_miRNA_variant'::text)) OR ((cvterm.name)::text = '5_prime_UTR_variant'::text)) OR ((cvterm.name)::text = '3_prime_UTR_variant'::text)) OR ((cvterm.name)::text = 'splice_site_variant'::text)) OR ((cvterm.name)::text = 'splice_acceptor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_5th_base_variant'::text)) OR ((cvterm.name)::text = 'coding_sequence_variant'::text)) OR ((cvterm.name)::text = 'non_coding_exon_variant'::text)) OR ((cvterm.name)::text = 'codon_variant'::text)) OR ((cvterm.name)::text = 'frameshift_variant'::text)) OR ((cvterm.name)::text = 'inframe_variant'::text)) OR ((cvterm.name)::text = 'initiator_codon_change'::text)) OR ((cvterm.name)::text = 'non_synonymous_codon'::text)) OR ((cvterm.name)::text = 'synonymous_codon'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_gained'::text)) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text)) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'frame_restoring_variant'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_2_frameshift variant'::text)) OR ((cvterm.name)::text = 'inframe_codon_gain'::text)) OR ((cvterm.name)::text = 'inframe_codon_loss'::text)) OR ((cvterm.name)::text = '3D_polypeptide_structure_variant'::text)) OR ((cvterm.name)::text = 'complex_change_of_translational_product_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_sequence_variant'::text)) OR ((cvterm.name)::text = 'complex_3D_structural_variant'::text)) OR ((cvterm.name)::text = 'conformational_change_variant'::text)) OR ((cvterm.name)::text = 'amino_acid_deletion'::text)) OR ((cvterm.name)::text = 'amino_acid_insertion'::text)) OR ((cvterm.name)::text = 'amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide'::text)) OR ((cvterm.name)::text = 'polypeptide_fusion'::text)) OR ((cvterm.name)::text = 'polypeptide_truncation'::text)) OR ((cvterm.name)::text = 'conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'non_conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'TF_binding_site_variant'::text)) OR ((cvterm.name)::text = '5KB_upstream_variant'::text)) OR ((cvterm.name)::text = '2KB_upstream_variant'::text)) OR ((cvterm.name)::text = '5KB_downstream_variant'::text)) OR ((cvterm.name)::text = '500B_downstream_variant'::text)) OR ((cvterm.name)::text = 'sequence_variant'::text));
- --
- -- Name: sequencing_primer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sequencing_primer AS
- SELECT feature.feature_id AS sequencing_primer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'sequencing_primer'::text);
- --
- -- Name: serine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW serine AS
- SELECT feature.feature_id AS serine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'serine'::text);
- --
- -- Name: serine_threonine_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW serine_threonine_motif AS
- SELECT feature.feature_id AS serine_threonine_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'serine_threonine_motif'::text);
- --
- -- Name: serine_threonine_staple_motif; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW serine_threonine_staple_motif AS
- SELECT feature.feature_id AS serine_threonine_staple_motif_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'serine_threonine_staple_motif'::text);
- --
- -- Name: serine_threonine_turn; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW serine_threonine_turn AS
- SELECT feature.feature_id AS serine_threonine_turn_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'st_turn_left_handed_type_one'::text) OR ((cvterm.name)::text = 'st_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'serine_threonine_turn'::text));
- --
- -- Name: serine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW serine_trna_primary_transcript AS
- SELECT feature.feature_id AS serine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'serine_tRNA_primary_transcript'::text);
- --
- -- Name: seryl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW seryl_trna AS
- SELECT feature.feature_id AS seryl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'seryl_tRNA'::text);
- --
- -- Name: seven_aminomethyl_seven_deazaguanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW seven_aminomethyl_seven_deazaguanosine AS
- SELECT feature.feature_id AS seven_aminomethyl_seven_deazaguanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text);
- --
- -- Name: seven_cyano_seven_deazaguanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW seven_cyano_seven_deazaguanosine AS
- SELECT feature.feature_id AS seven_cyano_seven_deazaguanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text);
- --
- -- Name: seven_deazaguanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW seven_deazaguanosine AS
- SELECT feature.feature_id AS seven_deazaguanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'queuosine'::text) OR ((cvterm.name)::text = 'epoxyqueuosine'::text)) OR ((cvterm.name)::text = 'galactosyl_queuosine'::text)) OR ((cvterm.name)::text = 'mannosyl_queuosine'::text)) OR ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'archaeosine'::text)) OR ((cvterm.name)::text = 'seven_deazaguanosine'::text));
- --
- -- Name: seven_methylguanine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW seven_methylguanine AS
- SELECT feature.feature_id AS seven_methylguanine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'seven_methylguanine'::text);
- --
- -- Name: seven_methylguanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW seven_methylguanosine AS
- SELECT feature.feature_id AS seven_methylguanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'seven_methylguanosine'::text);
- --
- -- Name: shadow_enhancer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW shadow_enhancer AS
- SELECT feature.feature_id AS shadow_enhancer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'shadow_enhancer'::text);
- --
- -- Name: shine_dalgarno_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW shine_dalgarno_sequence AS
- SELECT feature.feature_id AS shine_dalgarno_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'Shine_Dalgarno_sequence'::text);
- --
- -- Name: signal_peptide; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW signal_peptide AS
- SELECT feature.feature_id AS signal_peptide_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'signal_peptide'::text);
- --
- -- Name: silenced; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW silenced AS
- SELECT feature.feature_id AS silenced_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'silenced_by_DNA_modification'::text) OR ((cvterm.name)::text = 'silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'silenced'::text));
- --
- -- Name: silenced_by_dna_methylation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW silenced_by_dna_methylation AS
- SELECT feature.feature_id AS silenced_by_dna_methylation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text);
- --
- -- Name: silenced_by_dna_modification; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW silenced_by_dna_modification AS
- SELECT feature.feature_id AS silenced_by_dna_modification_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'silenced_by_DNA_methylation'::text) OR ((cvterm.name)::text = 'silenced_by_DNA_modification'::text));
- --
- -- Name: silenced_by_histone_deacetylation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW silenced_by_histone_deacetylation AS
- SELECT feature.feature_id AS silenced_by_histone_deacetylation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text);
- --
- -- Name: silenced_by_histone_methylation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW silenced_by_histone_methylation AS
- SELECT feature.feature_id AS silenced_by_histone_methylation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'silenced_by_histone_methylation'::text);
- --
- -- Name: silenced_by_histone_modification; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW silenced_by_histone_modification AS
- SELECT feature.feature_id AS silenced_by_histone_modification_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'silenced_by_histone_methylation'::text) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text));
- --
- -- Name: silenced_by_rna_interference; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW silenced_by_rna_interference AS
- SELECT feature.feature_id AS silenced_by_rna_interference_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'silenced_by_RNA_interference'::text);
- --
- -- Name: silenced_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW silenced_gene AS
- SELECT feature.feature_id AS silenced_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'gene_silenced_by_DNA_modification'::text) OR ((cvterm.name)::text = 'gene_silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'silenced_gene'::text));
- --
- -- Name: silencer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW silencer AS
- SELECT feature.feature_id AS silencer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'silencer'::text);
- --
- -- Name: silent_mutation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW silent_mutation AS
- SELECT feature.feature_id AS silent_mutation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'silent_mutation'::text);
- --
- -- Name: simple_sequence_length_variation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW simple_sequence_length_variation AS
- SELECT feature.feature_id AS simple_sequence_length_variation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'simple_sequence_length_variation'::text);
- --
- -- Name: sine_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sine_element AS
- SELECT feature.feature_id AS sine_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SINE_element'::text);
- --
- -- Name: single; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW single AS
- SELECT feature.feature_id AS single_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'single'::text);
- --
- -- Name: single_strand_restriction_enzyme_cleavage_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW single_strand_restriction_enzyme_cleavage_site AS
- SELECT feature.feature_id AS single_strand_restriction_enzyme_cleavage_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'five_prime_restriction_enzyme_junction'::text) OR ((cvterm.name)::text = 'three_prime_restriction_enzyme_junction'::text)) OR ((cvterm.name)::text = 'single_strand_restriction_enzyme_cleavage_site'::text));
- --
- -- Name: single_stranded_cdna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW single_stranded_cdna AS
- SELECT feature.feature_id AS single_stranded_cdna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'single_stranded_cDNA'::text);
- --
- -- Name: single_stranded_dna_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW single_stranded_dna_chromosome AS
- SELECT feature.feature_id AS single_stranded_dna_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'linear_single_stranded_DNA_chromosome'::text) OR ((cvterm.name)::text = 'circular_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_DNA_chromosome'::text));
- --
- -- Name: single_stranded_rna_chromosome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW single_stranded_rna_chromosome AS
- SELECT feature.feature_id AS single_stranded_rna_chromosome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'linear_single_stranded_RNA_chromosome'::text) OR ((cvterm.name)::text = 'circular_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_RNA_chromosome'::text));
- --
- -- Name: sirna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sirna AS
- SELECT feature.feature_id AS sirna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'siRNA'::text);
- --
- -- Name: site_specific_recombination_target_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW site_specific_recombination_target_region AS
- SELECT feature.feature_id AS site_specific_recombination_target_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((cvterm.name)::text = 'integration_excision_site'::text) OR ((cvterm.name)::text = 'resolution_site'::text)) OR ((cvterm.name)::text = 'inversion_site'::text)) OR ((cvterm.name)::text = 'inversion_site_part'::text)) OR ((cvterm.name)::text = 'attI_site'::text)) OR ((cvterm.name)::text = 'attP_site'::text)) OR ((cvterm.name)::text = 'attB_site'::text)) OR ((cvterm.name)::text = 'attL_site'::text)) OR ((cvterm.name)::text = 'attR_site'::text)) OR ((cvterm.name)::text = 'attC_site'::text)) OR ((cvterm.name)::text = 'attCtn_site'::text)) OR ((cvterm.name)::text = 'loxP_site'::text)) OR ((cvterm.name)::text = 'dif_site'::text)) OR ((cvterm.name)::text = 'FRT_site'::text)) OR ((cvterm.name)::text = 'IRLinv_site'::text)) OR ((cvterm.name)::text = 'IRRinv_site'::text)) OR ((cvterm.name)::text = 'site_specific_recombination_target_region'::text));
- --
- -- Name: sl10_accceptor_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sl10_accceptor_site AS
- SELECT feature.feature_id AS sl10_accceptor_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SL10_accceptor_site'::text);
- --
- -- Name: sl11_acceptor_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sl11_acceptor_site AS
- SELECT feature.feature_id AS sl11_acceptor_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SL11_acceptor_site'::text);
- --
- -- Name: sl12_acceptor_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sl12_acceptor_site AS
- SELECT feature.feature_id AS sl12_acceptor_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SL12_acceptor_site'::text);
- --
- -- Name: sl1_acceptor_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sl1_acceptor_site AS
- SELECT feature.feature_id AS sl1_acceptor_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SL1_acceptor_site'::text);
- --
- -- Name: sl2_acceptor_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sl2_acceptor_site AS
- SELECT feature.feature_id AS sl2_acceptor_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((cvterm.name)::text = 'SL3_acceptor_site'::text) OR ((cvterm.name)::text = 'SL4_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL5_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL6_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL7_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL8_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL9_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL10_accceptor_site'::text)) OR ((cvterm.name)::text = 'SL11_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL12_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL2_acceptor_site'::text));
- --
- -- Name: sl3_acceptor_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sl3_acceptor_site AS
- SELECT feature.feature_id AS sl3_acceptor_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SL3_acceptor_site'::text);
- --
- -- Name: sl4_acceptor_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sl4_acceptor_site AS
- SELECT feature.feature_id AS sl4_acceptor_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SL4_acceptor_site'::text);
- --
- -- Name: sl5_acceptor_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sl5_acceptor_site AS
- SELECT feature.feature_id AS sl5_acceptor_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SL5_acceptor_site'::text);
- --
- -- Name: sl6_acceptor_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sl6_acceptor_site AS
- SELECT feature.feature_id AS sl6_acceptor_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SL6_acceptor_site'::text);
- --
- -- Name: sl7_acceptor_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sl7_acceptor_site AS
- SELECT feature.feature_id AS sl7_acceptor_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SL7_acceptor_site'::text);
- --
- -- Name: sl8_acceptor_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sl8_acceptor_site AS
- SELECT feature.feature_id AS sl8_acceptor_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SL8_acceptor_site'::text);
- --
- -- Name: sl9_acceptor_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sl9_acceptor_site AS
- SELECT feature.feature_id AS sl9_acceptor_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SL9_acceptor_site'::text);
- --
- -- Name: small_regulatory_ncrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW small_regulatory_ncrna AS
- SELECT feature.feature_id AS small_regulatory_ncrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((cvterm.name)::text = 'miRNA'::text) OR ((cvterm.name)::text = 'RNA_6S'::text)) OR ((cvterm.name)::text = 'CsrB_RsmB_RNA'::text)) OR ((cvterm.name)::text = 'DsrA_RNA'::text)) OR ((cvterm.name)::text = 'OxyS_RNA'::text)) OR ((cvterm.name)::text = 'RprA_RNA'::text)) OR ((cvterm.name)::text = 'RRE_RNA'::text)) OR ((cvterm.name)::text = 'spot_42_RNA'::text)) OR ((cvterm.name)::text = 'tmRNA'::text)) OR ((cvterm.name)::text = 'GcvB_RNA'::text)) OR ((cvterm.name)::text = 'small_regulatory_ncRNA'::text));
- --
- -- Name: small_subunit_rrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW small_subunit_rrna AS
- SELECT feature.feature_id AS small_subunit_rrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'rRNA_18S'::text) OR ((cvterm.name)::text = 'rRNA_16S'::text)) OR ((cvterm.name)::text = 'small_subunit_rRNA'::text));
- --
- -- Name: snorna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW snorna AS
- SELECT feature.feature_id AS snorna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'C_D_box_snoRNA'::text) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA'::text)) OR ((cvterm.name)::text = 'U14_snoRNA'::text)) OR ((cvterm.name)::text = 'U3_snoRNA'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'pseudouridylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'snoRNA'::text));
- --
- -- Name: snorna_encoding; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW snorna_encoding AS
- SELECT feature.feature_id AS snorna_encoding_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'C_D_box_snoRNA_encoding'::text) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'snoRNA_encoding'::text));
- --
- -- Name: snorna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW snorna_gene AS
- SELECT feature.feature_id AS snorna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'snoRNA_gene'::text);
- --
- -- Name: snorna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW snorna_primary_transcript AS
- SELECT feature.feature_id AS snorna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'methylation_guide_snoRNA_primary_transcript'::text) OR ((cvterm.name)::text = 'rRNA_cleavage_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'U14_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snoRNA_primary_transcript'::text));
- --
- -- Name: snp; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW snp AS
- SELECT feature.feature_id AS snp_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SNP'::text);
- --
- -- Name: snrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW snrna AS
- SELECT feature.feature_id AS snrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((cvterm.name)::text = 'U1_snRNA'::text) OR ((cvterm.name)::text = 'U2_snRNA'::text)) OR ((cvterm.name)::text = 'U4_snRNA'::text)) OR ((cvterm.name)::text = 'U4atac_snRNA'::text)) OR ((cvterm.name)::text = 'U5_snRNA'::text)) OR ((cvterm.name)::text = 'U6_snRNA'::text)) OR ((cvterm.name)::text = 'U6atac_snRNA'::text)) OR ((cvterm.name)::text = 'U11_snRNA'::text)) OR ((cvterm.name)::text = 'U12_snRNA'::text)) OR ((cvterm.name)::text = 'snRNA'::text));
- --
- -- Name: snrna_encoding; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW snrna_encoding AS
- SELECT feature.feature_id AS snrna_encoding_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'snRNA_encoding'::text);
- --
- -- Name: snrna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW snrna_gene AS
- SELECT feature.feature_id AS snrna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'snRNA_gene'::text);
- --
- -- Name: snrna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW snrna_primary_transcript AS
- SELECT feature.feature_id AS snrna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'snRNA_primary_transcript'::text);
- --
- -- Name: snv; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW snv AS
- SELECT feature.feature_id AS snv_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((cvterm.name)::text = 'SNP'::text) OR ((cvterm.name)::text = 'point_mutation'::text)) OR ((cvterm.name)::text = 'transition'::text)) OR ((cvterm.name)::text = 'transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'SNV'::text));
- --
- -- Name: so_foreign; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW so_foreign AS
- SELECT feature.feature_id AS so_foreign_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'foreign'::text);
- --
- -- Name: so_genotype; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW so_genotype AS
- SELECT feature.feature_id AS so_genotype_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'genotype'::text);
- --
- -- Name: so_natural; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW so_natural AS
- SELECT feature.feature_id AS so_natural_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'natural'::text);
- --
- -- Name: solo_ltr; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW solo_ltr AS
- SELECT feature.feature_id AS solo_ltr_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'solo_LTR'::text);
- --
- -- Name: somatic_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW somatic_variant AS
- SELECT feature.feature_id AS somatic_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'somatic_variant'::text);
- --
- -- Name: sonicate_fragment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sonicate_fragment AS
- SELECT feature.feature_id AS sonicate_fragment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'sonicate_fragment'::text);
- --
- -- Name: sp6_rna_polymerase_promoter; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sp6_rna_polymerase_promoter AS
- SELECT feature.feature_id AS sp6_rna_polymerase_promoter_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text);
- --
- -- Name: specific_recombination_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW specific_recombination_site AS
- SELECT feature.feature_id AS specific_recombination_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'recombination_feature_of_rearranged_gene'::text) OR ((cvterm.name)::text = 'site_specific_recombination_target_region'::text)) OR ((cvterm.name)::text = 'recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text)) OR ((cvterm.name)::text = 'D_gene'::text)) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'three_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'VD_gene'::text)) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'integration_excision_site'::text)) OR ((cvterm.name)::text = 'resolution_site'::text)) OR ((cvterm.name)::text = 'inversion_site'::text)) OR ((cvterm.name)::text = 'inversion_site_part'::text)) OR ((cvterm.name)::text = 'attI_site'::text)) OR ((cvterm.name)::text = 'attP_site'::text)) OR ((cvterm.name)::text = 'attB_site'::text)) OR ((cvterm.name)::text = 'attL_site'::text)) OR ((cvterm.name)::text = 'attR_site'::text)) OR ((cvterm.name)::text = 'attC_site'::text)) OR ((cvterm.name)::text = 'attCtn_site'::text)) OR ((cvterm.name)::text = 'loxP_site'::text)) OR ((cvterm.name)::text = 'dif_site'::text)) OR ((cvterm.name)::text = 'FRT_site'::text)) OR ((cvterm.name)::text = 'IRLinv_site'::text)) OR ((cvterm.name)::text = 'IRRinv_site'::text)) OR ((cvterm.name)::text = 'specific_recombination_site'::text));
- --
- -- Name: splice_acceptor_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW splice_acceptor_variant AS
- SELECT feature.feature_id AS splice_acceptor_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'splice_acceptor_variant'::text);
- --
- -- Name: splice_donor_5th_base_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW splice_donor_5th_base_variant AS
- SELECT feature.feature_id AS splice_donor_5th_base_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'splice_donor_5th_base_variant'::text);
- --
- -- Name: splice_donor_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW splice_donor_variant AS
- SELECT feature.feature_id AS splice_donor_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'splice_donor_variant'::text);
- --
- -- Name: splice_enhancer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW splice_enhancer AS
- SELECT feature.feature_id AS splice_enhancer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'intronic_splice_enhancer'::text) OR ((cvterm.name)::text = 'exonic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'splice_enhancer'::text));
- --
- -- Name: splice_junction; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW splice_junction AS
- SELECT feature.feature_id AS splice_junction_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'splice_junction'::text);
- --
- -- Name: splice_region_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW splice_region_variant AS
- SELECT feature.feature_id AS splice_region_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'splice_region_variant'::text);
- --
- -- Name: splice_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW splice_site AS
- SELECT feature.feature_id AS splice_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((cvterm.name)::text = 'cis_splice_site'::text) OR ((cvterm.name)::text = 'trans_splice_site'::text)) OR ((cvterm.name)::text = 'cryptic_splice_site'::text)) OR ((cvterm.name)::text = 'five_prime_cis_splice_site'::text)) OR ((cvterm.name)::text = 'three_prime_cis_splice_site'::text)) OR ((cvterm.name)::text = 'recursive_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'trans_splice_acceptor_site'::text)) OR ((cvterm.name)::text = 'trans_splice_donor_site'::text)) OR ((cvterm.name)::text = 'SL1_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL2_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL3_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL4_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL5_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL6_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL7_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL8_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL9_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL10_accceptor_site'::text)) OR ((cvterm.name)::text = 'SL11_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL12_acceptor_site'::text)) OR ((cvterm.name)::text = 'splice_site'::text));
- --
- -- Name: splice_site_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW splice_site_variant AS
- SELECT feature.feature_id AS splice_site_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'splice_acceptor_variant'::text) OR ((cvterm.name)::text = 'splice_donor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_5th_base_variant'::text)) OR ((cvterm.name)::text = 'splice_site_variant'::text));
- --
- -- Name: spliced_leader_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW spliced_leader_rna AS
- SELECT feature.feature_id AS spliced_leader_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'spliced_leader_RNA'::text);
- --
- -- Name: spliceosomal_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW spliceosomal_intron AS
- SELECT feature.feature_id AS spliceosomal_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'U2_intron'::text) OR ((cvterm.name)::text = 'U12_intron'::text)) OR ((cvterm.name)::text = 'spliceosomal_intron'::text));
- --
- -- Name: spliceosomal_intron_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW spliceosomal_intron_region AS
- SELECT feature.feature_id AS spliceosomal_intron_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'intronic_splice_enhancer'::text) OR ((cvterm.name)::text = 'branch_site'::text)) OR ((cvterm.name)::text = 'polypyrimidine_tract'::text)) OR ((cvterm.name)::text = 'spliceosomal_intron_region'::text));
- --
- -- Name: splicing_regulatory_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW splicing_regulatory_region AS
- SELECT feature.feature_id AS splicing_regulatory_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'splice_enhancer'::text) OR ((cvterm.name)::text = 'intronic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'exonic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'splicing_regulatory_region'::text));
- --
- -- Name: splicing_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW splicing_variant AS
- SELECT feature.feature_id AS splicing_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'cryptic_splice_site_variant'::text) OR ((cvterm.name)::text = 'exon_loss'::text)) OR ((cvterm.name)::text = 'intron_gain'::text)) OR ((cvterm.name)::text = 'splice_region_variant'::text)) OR ((cvterm.name)::text = 'cryptic_splice_acceptor'::text)) OR ((cvterm.name)::text = 'cryptic_splice_donor'::text)) OR ((cvterm.name)::text = 'splicing_variant'::text));
- --
- -- Name: spot_42_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW spot_42_rna AS
- SELECT feature.feature_id AS spot_42_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'spot_42_RNA'::text);
- --
- -- Name: srp_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW srp_rna AS
- SELECT feature.feature_id AS srp_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SRP_RNA'::text);
- --
- -- Name: srp_rna_encoding; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW srp_rna_encoding AS
- SELECT feature.feature_id AS srp_rna_encoding_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SRP_RNA_encoding'::text);
- --
- -- Name: srp_rna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW srp_rna_gene AS
- SELECT feature.feature_id AS srp_rna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SRP_RNA_gene'::text);
- --
- -- Name: srp_rna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW srp_rna_primary_transcript AS
- SELECT feature.feature_id AS srp_rna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'SRP_RNA_primary_transcript'::text);
- --
- -- Name: ss_oligo; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ss_oligo AS
- SELECT feature.feature_id AS ss_oligo_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'primer'::text) OR ((cvterm.name)::text = 'sequencing_primer'::text)) OR ((cvterm.name)::text = 'forward_primer'::text)) OR ((cvterm.name)::text = 'reverse_primer'::text)) OR ((cvterm.name)::text = 'ASPE_primer'::text)) OR ((cvterm.name)::text = 'dCAPS_primer'::text)) OR ((cvterm.name)::text = 'ss_oligo'::text));
- --
- -- Name: ss_rna_viral_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ss_rna_viral_sequence AS
- SELECT feature.feature_id AS ss_rna_viral_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text));
- --
- -- Name: st_turn_left_handed_type_one; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW st_turn_left_handed_type_one AS
- SELECT feature.feature_id AS st_turn_left_handed_type_one_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'st_turn_left_handed_type_one'::text);
- --
- -- Name: st_turn_left_handed_type_two; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW st_turn_left_handed_type_two AS
- SELECT feature.feature_id AS st_turn_left_handed_type_two_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'st_turn_left_handed_type_two'::text);
- --
- -- Name: st_turn_right_handed_type_one; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW st_turn_right_handed_type_one AS
- SELECT feature.feature_id AS st_turn_right_handed_type_one_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'st_turn_right_handed_type_one'::text);
- --
- -- Name: st_turn_right_handed_type_two; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW st_turn_right_handed_type_two AS
- SELECT feature.feature_id AS st_turn_right_handed_type_two_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'st_turn_right_handed_type_two'::text);
- --
- -- Name: standard_draft; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW standard_draft AS
- SELECT feature.feature_id AS standard_draft_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'standard_draft'::text);
- --
- -- Name: start_codon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW start_codon AS
- SELECT feature.feature_id AS start_codon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'non_canonical_start_codon'::text) OR ((cvterm.name)::text = 'four_bp_start_codon'::text)) OR ((cvterm.name)::text = 'CTG_start_codon'::text)) OR ((cvterm.name)::text = 'start_codon'::text));
- --
- -- Name: status; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW status AS
- SELECT feature.feature_id AS status_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((cvterm.name)::text = 'fragmentary'::text) OR ((cvterm.name)::text = 'predicted'::text)) OR ((cvterm.name)::text = 'validated'::text)) OR ((cvterm.name)::text = 'invalidated'::text)) OR ((cvterm.name)::text = 'independently_known'::text)) OR ((cvterm.name)::text = 'consensus'::text)) OR ((cvterm.name)::text = 'low_complexity'::text)) OR ((cvterm.name)::text = 'whole_genome_sequence_status'::text)) OR ((cvterm.name)::text = 'supported_by_sequence_similarity'::text)) OR ((cvterm.name)::text = 'orphan'::text)) OR ((cvterm.name)::text = 'predicted_by_ab_initio_computation'::text)) OR ((cvterm.name)::text = 'supported_by_domain_match'::text)) OR ((cvterm.name)::text = 'supported_by_EST_or_cDNA'::text)) OR ((cvterm.name)::text = 'experimentally_determined'::text)) OR ((cvterm.name)::text = 'invalidated_by_chimeric_cDNA'::text)) OR ((cvterm.name)::text = 'invalidated_by_genomic_contamination'::text)) OR ((cvterm.name)::text = 'invalidated_by_genomic_polyA_primed_cDNA'::text)) OR ((cvterm.name)::text = 'invalidated_by_partial_processing'::text)) OR ((cvterm.name)::text = 'standard_draft'::text)) OR ((cvterm.name)::text = 'high_quality_draft'::text)) OR ((cvterm.name)::text = 'improved_high_quality_draft'::text)) OR ((cvterm.name)::text = 'annotation_directed_improved_draft'::text)) OR ((cvterm.name)::text = 'noncontiguous_finished'::text)) OR ((cvterm.name)::text = 'finished_genome'::text)) OR ((cvterm.name)::text = 'status'::text));
- --
- -- Name: stem_loop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW stem_loop AS
- SELECT feature.feature_id AS stem_loop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'tetraloop'::text) OR ((cvterm.name)::text = 'stem_loop'::text));
- --
- -- Name: sticky_end_restriction_enzyme_cleavage_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sticky_end_restriction_enzyme_cleavage_site AS
- SELECT feature.feature_id AS sticky_end_restriction_enzyme_cleavage_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'sticky_end_restriction_enzyme_cleavage_site'::text);
- --
- -- Name: stop_codon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW stop_codon AS
- SELECT feature.feature_id AS stop_codon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'stop_codon'::text);
- --
- -- Name: stop_codon_read_through; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW stop_codon_read_through AS
- SELECT feature.feature_id AS stop_codon_read_through_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text) OR ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'stop_codon_read_through'::text));
- --
- -- Name: stop_codon_redefined_as_pyrrolysine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW stop_codon_redefined_as_pyrrolysine AS
- SELECT feature.feature_id AS stop_codon_redefined_as_pyrrolysine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text);
- --
- -- Name: stop_codon_redefined_as_selenocysteine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW stop_codon_redefined_as_selenocysteine AS
- SELECT feature.feature_id AS stop_codon_redefined_as_selenocysteine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text);
- --
- -- Name: stop_codon_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW stop_codon_signal AS
- SELECT feature.feature_id AS stop_codon_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'UAG_stop_codon_signal'::text) OR ((cvterm.name)::text = 'UAA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UGA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'stop_codon_signal'::text));
- --
- -- Name: stop_gained; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW stop_gained AS
- SELECT feature.feature_id AS stop_gained_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'stop_gained'::text);
- --
- -- Name: stop_lost; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW stop_lost AS
- SELECT feature.feature_id AS stop_lost_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'stop_lost'::text);
- --
- -- Name: stop_retained_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW stop_retained_variant AS
- SELECT feature.feature_id AS stop_retained_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'stop_retained_variant'::text);
- --
- -- Name: strand_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW strand_attribute AS
- SELECT feature.feature_id AS strand_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'single'::text) OR ((cvterm.name)::text = 'double'::text)) OR ((cvterm.name)::text = 'strand_attribute'::text));
- --
- -- Name: strna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW strna AS
- SELECT feature.feature_id AS strna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'stRNA'::text);
- --
- -- Name: strna_encoding; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW strna_encoding AS
- SELECT feature.feature_id AS strna_encoding_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'stRNA_encoding'::text);
- --
- -- Name: strna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW strna_gene AS
- SELECT feature.feature_id AS strna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'stRNA_gene'::text);
- --
- -- Name: strna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW strna_primary_transcript AS
- SELECT feature.feature_id AS strna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'stRNA_primary_transcript'::text);
- --
- -- Name: structural_alteration; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW structural_alteration AS
- SELECT feature.feature_id AS structural_alteration_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'complex_structural_alteration'::text) OR ((cvterm.name)::text = 'structural_alteration'::text));
- --
- -- Name: structural_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW structural_variant AS
- SELECT feature.feature_id AS structural_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'silent_mutation'::text) OR ((cvterm.name)::text = 'copy_number_change'::text)) OR ((cvterm.name)::text = 'gene_variant'::text)) OR ((cvterm.name)::text = 'regulatory_region_variant'::text)) OR ((cvterm.name)::text = 'intergenic_variant'::text)) OR ((cvterm.name)::text = 'upstream_gene_variant'::text)) OR ((cvterm.name)::text = 'downstream_gene_variant'::text)) OR ((cvterm.name)::text = 'gene_fusion'::text)) OR ((cvterm.name)::text = 'splicing_variant'::text)) OR ((cvterm.name)::text = 'transcript_variant'::text)) OR ((cvterm.name)::text = 'translational_product_structure_variant'::text)) OR ((cvterm.name)::text = 'cryptic_splice_site_variant'::text)) OR ((cvterm.name)::text = 'exon_loss'::text)) OR ((cvterm.name)::text = 'intron_gain'::text)) OR ((cvterm.name)::text = 'splice_region_variant'::text)) OR ((cvterm.name)::text = 'cryptic_splice_acceptor'::text)) OR ((cvterm.name)::text = 'cryptic_splice_donor'::text)) OR ((cvterm.name)::text = 'complex_change_in_transcript'::text)) OR ((cvterm.name)::text = 'transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'nc_transcript_variant'::text)) OR ((cvterm.name)::text = 'NMD_transcript_variant'::text)) OR ((cvterm.name)::text = 'UTR_variant'::text)) OR ((cvterm.name)::text = 'intron_variant'::text)) OR ((cvterm.name)::text = 'exon_variant'::text)) OR ((cvterm.name)::text = 'compensatory_transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'mature_miRNA_variant'::text)) OR ((cvterm.name)::text = '5_prime_UTR_variant'::text)) OR ((cvterm.name)::text = '3_prime_UTR_variant'::text)) OR ((cvterm.name)::text = 'splice_site_variant'::text)) OR ((cvterm.name)::text = 'splice_acceptor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_5th_base_variant'::text)) OR ((cvterm.name)::text = 'coding_sequence_variant'::text)) OR ((cvterm.name)::text = 'non_coding_exon_variant'::text)) OR ((cvterm.name)::text = 'codon_variant'::text)) OR ((cvterm.name)::text = 'frameshift_variant'::text)) OR ((cvterm.name)::text = 'inframe_variant'::text)) OR ((cvterm.name)::text = 'initiator_codon_change'::text)) OR ((cvterm.name)::text = 'non_synonymous_codon'::text)) OR ((cvterm.name)::text = 'synonymous_codon'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_gained'::text)) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text)) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'frame_restoring_variant'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_2_frameshift variant'::text)) OR ((cvterm.name)::text = 'inframe_codon_gain'::text)) OR ((cvterm.name)::text = 'inframe_codon_loss'::text)) OR ((cvterm.name)::text = '3D_polypeptide_structure_variant'::text)) OR ((cvterm.name)::text = 'complex_change_of_translational_product_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_sequence_variant'::text)) OR ((cvterm.name)::text = 'complex_3D_structural_variant'::text)) OR ((cvterm.name)::text = 'conformational_change_variant'::text)) OR ((cvterm.name)::text = 'amino_acid_deletion'::text)) OR ((cvterm.name)::text = 'amino_acid_insertion'::text)) OR ((cvterm.name)::text = 'amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide'::text)) OR ((cvterm.name)::text = 'polypeptide_fusion'::text)) OR ((cvterm.name)::text = 'polypeptide_truncation'::text)) OR ((cvterm.name)::text = 'conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'non_conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'TF_binding_site_variant'::text)) OR ((cvterm.name)::text = '5KB_upstream_variant'::text)) OR ((cvterm.name)::text = '2KB_upstream_variant'::text)) OR ((cvterm.name)::text = '5KB_downstream_variant'::text)) OR ((cvterm.name)::text = '500B_downstream_variant'::text)) OR ((cvterm.name)::text = 'structural_variant'::text));
- --
- -- Name: sts; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sts AS
- SELECT feature.feature_id AS sts_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'STS'::text);
- --
- -- Name: sts_map; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sts_map AS
- SELECT feature.feature_id AS sts_map_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'STS_map'::text);
- --
- -- Name: substitution; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW substitution AS
- SELECT feature.feature_id AS substitution_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((cvterm.name)::text = 'sequence_length_variation'::text) OR ((cvterm.name)::text = 'MNP'::text)) OR ((cvterm.name)::text = 'SNV'::text)) OR ((cvterm.name)::text = 'complex_substitution'::text)) OR ((cvterm.name)::text = 'simple_sequence_length_variation'::text)) OR ((cvterm.name)::text = 'SNP'::text)) OR ((cvterm.name)::text = 'point_mutation'::text)) OR ((cvterm.name)::text = 'transition'::text)) OR ((cvterm.name)::text = 'transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'substitution'::text));
- --
- -- Name: sugar_edge_base_pair; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW sugar_edge_base_pair AS
- SELECT feature.feature_id AS sugar_edge_base_pair_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'sugar_edge_base_pair'::text);
- --
- -- Name: supercontig; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW supercontig AS
- SELECT feature.feature_id AS supercontig_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'supercontig'::text);
- --
- -- Name: supported_by_domain_match; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW supported_by_domain_match AS
- SELECT feature.feature_id AS supported_by_domain_match_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'supported_by_domain_match'::text);
- --
- -- Name: supported_by_est_or_cdna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW supported_by_est_or_cdna AS
- SELECT feature.feature_id AS supported_by_est_or_cdna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'supported_by_EST_or_cDNA'::text);
- --
- -- Name: supported_by_sequence_similarity; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW supported_by_sequence_similarity AS
- SELECT feature.feature_id AS supported_by_sequence_similarity_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'supported_by_domain_match'::text) OR ((cvterm.name)::text = 'supported_by_EST_or_cDNA'::text)) OR ((cvterm.name)::text = 'supported_by_sequence_similarity'::text));
- --
- -- Name: symbiosis_island; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW symbiosis_island AS
- SELECT feature.feature_id AS symbiosis_island_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'symbiosis_island'::text);
- --
- -- Name: symmetric_rna_internal_loop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW symmetric_rna_internal_loop AS
- SELECT feature.feature_id AS symmetric_rna_internal_loop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text);
- --
- -- Name: synonymous_codon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW synonymous_codon AS
- SELECT feature.feature_id AS synonymous_codon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'synonymous_codon'::text);
- --
- -- Name: syntenic; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW syntenic AS
- SELECT feature.feature_id AS syntenic_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'syntenic'::text);
- --
- -- Name: syntenic_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW syntenic_region AS
- SELECT feature.feature_id AS syntenic_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'syntenic_region'::text);
- --
- -- Name: synthetic_oligo; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW synthetic_oligo AS
- SELECT feature.feature_id AS synthetic_oligo_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'morpholino_oligo'::text) OR ((cvterm.name)::text = 'PNA_oligo'::text)) OR ((cvterm.name)::text = 'LNA_oligo'::text)) OR ((cvterm.name)::text = 'TNA_oligo'::text)) OR ((cvterm.name)::text = 'GNA_oligo'::text)) OR ((cvterm.name)::text = 'R_GNA_oligo'::text)) OR ((cvterm.name)::text = 'S_GNA_oligo'::text)) OR ((cvterm.name)::text = 'synthetic_oligo'::text));
- --
- -- Name: synthetic_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW synthetic_sequence AS
- SELECT feature.feature_id AS synthetic_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'random_sequence'::text) OR ((cvterm.name)::text = 'designed_sequence'::text)) OR ((cvterm.name)::text = 'synthetic_sequence'::text));
- --
- -- Name: t3_rna_polymerase_promoter; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW t3_rna_polymerase_promoter AS
- SELECT feature.feature_id AS t3_rna_polymerase_promoter_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text);
- --
- -- Name: t7_rna_polymerase_promoter; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW t7_rna_polymerase_promoter AS
- SELECT feature.feature_id AS t7_rna_polymerase_promoter_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text);
- --
- -- Name: t_loop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW t_loop AS
- SELECT feature.feature_id AS t_loop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'T_loop'::text);
- --
- -- Name: t_to_a_transversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW t_to_a_transversion AS
- SELECT feature.feature_id AS t_to_a_transversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'T_to_A_transversion'::text);
- --
- -- Name: t_to_c_transition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW t_to_c_transition AS
- SELECT feature.feature_id AS t_to_c_transition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'T_to_C_transition'::text);
- --
- -- Name: t_to_g_transversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW t_to_g_transversion AS
- SELECT feature.feature_id AS t_to_g_transversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'T_to_G_transversion'::text);
- --
- -- Name: tag; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tag AS
- SELECT feature.feature_id AS tag_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((cvterm.name)::text = 'SAGE_tag'::text) OR ((cvterm.name)::text = 'STS'::text)) OR ((cvterm.name)::text = 'EST'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'five_prime_EST'::text)) OR ((cvterm.name)::text = 'three_prime_EST'::text)) OR ((cvterm.name)::text = 'UST'::text)) OR ((cvterm.name)::text = 'RST'::text)) OR ((cvterm.name)::text = 'three_prime_UST'::text)) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'three_prime_RST'::text)) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'tag'::text));
- --
- -- Name: tandem; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tandem AS
- SELECT feature.feature_id AS tandem_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tandem'::text);
- --
- -- Name: tandem_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tandem_duplication AS
- SELECT feature.feature_id AS tandem_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'direct_tandem_duplication'::text) OR ((cvterm.name)::text = 'inverted_tandem_duplication'::text)) OR ((cvterm.name)::text = 'tandem_duplication'::text));
- --
- -- Name: tandem_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tandem_repeat AS
- SELECT feature.feature_id AS tandem_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'satellite_DNA'::text) OR ((cvterm.name)::text = 'microsatellite'::text)) OR ((cvterm.name)::text = 'minisatellite'::text)) OR ((cvterm.name)::text = 'dinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'trinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'tetranucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'tandem_repeat'::text));
- --
- -- Name: target_site_duplication; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW target_site_duplication AS
- SELECT feature.feature_id AS target_site_duplication_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'target_site_duplication'::text);
- --
- -- Name: targeting_vector; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW targeting_vector AS
- SELECT feature.feature_id AS targeting_vector_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'targeting_vector'::text);
- --
- -- Name: tasirna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tasirna AS
- SELECT feature.feature_id AS tasirna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tasiRNA'::text);
- --
- -- Name: tasirna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tasirna_primary_transcript AS
- SELECT feature.feature_id AS tasirna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tasiRNA_primary_transcript'::text);
- --
- -- Name: tata_box; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tata_box AS
- SELECT feature.feature_id AS tata_box_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'TATA_box'::text));
- --
- -- Name: telomerase_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW telomerase_rna AS
- SELECT feature.feature_id AS telomerase_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'telomerase_RNA'::text);
- --
- -- Name: telomerase_rna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW telomerase_rna_gene AS
- SELECT feature.feature_id AS telomerase_rna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'telomerase_RNA_gene'::text);
- --
- -- Name: telomere; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW telomere AS
- SELECT feature.feature_id AS telomere_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'telomere'::text);
- --
- -- Name: telomeric_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW telomeric_repeat AS
- SELECT feature.feature_id AS telomeric_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'telomeric_repeat'::text);
- --
- -- Name: template_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW template_region AS
- SELECT feature.feature_id AS template_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'template_region'::text);
- --
- -- Name: terminal_codon_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW terminal_codon_variant AS
- SELECT feature.feature_id AS terminal_codon_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'terminator_codon_variant'::text) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text));
- --
- -- Name: terminal_inverted_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW terminal_inverted_repeat AS
- SELECT feature.feature_id AS terminal_inverted_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'five_prime_terminal_inverted_repeat'::text) OR ((cvterm.name)::text = 'three_prime_terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat'::text));
- --
- -- Name: terminal_inverted_repeat_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW terminal_inverted_repeat_element AS
- SELECT feature.feature_id AS terminal_inverted_repeat_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'MITE'::text) OR ((cvterm.name)::text = 'insertion_sequence'::text)) OR ((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat_element'::text));
- --
- -- Name: terminator; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW terminator AS
- SELECT feature.feature_id AS terminator_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'bacterial_terminator'::text) OR ((cvterm.name)::text = 'eukaryotic_terminator'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'terminator_of_type_2_RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'terminator'::text));
- --
- -- Name: terminator_codon_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW terminator_codon_variant AS
- SELECT feature.feature_id AS terminator_codon_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'stop_retained_variant'::text) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text));
- --
- -- Name: terminator_of_type_2_rnapol_iii_promoter; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW terminator_of_type_2_rnapol_iii_promoter AS
- SELECT feature.feature_id AS terminator_of_type_2_rnapol_iii_promoter_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'terminator_of_type_2_RNApol_III_promoter'::text);
- --
- -- Name: tetraloop; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tetraloop AS
- SELECT feature.feature_id AS tetraloop_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tetraloop'::text);
- --
- -- Name: tetranuc_repeat_microsat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tetranuc_repeat_microsat AS
- SELECT feature.feature_id AS tetranuc_repeat_microsat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tetranucleotide_repeat_microsatellite_feature'::text);
- --
- -- Name: tf_binding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tf_binding_site AS
- SELECT feature.feature_id AS tf_binding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'TF_binding_site'::text);
- --
- -- Name: tf_binding_site_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tf_binding_site_variant AS
- SELECT feature.feature_id AS tf_binding_site_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'TF_binding_site_variant'::text);
- --
- -- Name: thr_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW thr_trna_primary_transcript AS
- SELECT feature.feature_id AS thr_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'threonine_tRNA_primary_transcript'::text);
- --
- -- Name: three_methylcytidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_methylcytidine AS
- SELECT feature.feature_id AS three_methylcytidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_methylcytidine'::text);
- --
- -- Name: three_methylpseudouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_methylpseudouridine AS
- SELECT feature.feature_id AS three_methylpseudouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_methylpseudouridine'::text);
- --
- -- Name: three_methyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_methyluridine AS
- SELECT feature.feature_id AS three_methyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_methyluridine'::text);
- --
- -- Name: three_prime_cis_splice_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_cis_splice_site AS
- SELECT feature.feature_id AS three_prime_cis_splice_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'canonical_three_prime_splice_site'::text) OR ((cvterm.name)::text = 'non_canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'three_prime_cis_splice_site'::text));
- --
- -- Name: three_prime_clip; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_clip AS
- SELECT feature.feature_id AS three_prime_clip_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_clip'::text);
- --
- -- Name: three_prime_coding_exon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_coding_exon AS
- SELECT feature.feature_id AS three_prime_coding_exon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_coding_exon'::text);
- --
- -- Name: three_prime_coding_exon_coding_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_coding_exon_coding_region AS
- SELECT feature.feature_id AS three_prime_coding_exon_coding_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_coding_exon_coding_region'::text);
- --
- -- Name: three_prime_coding_exon_noncoding_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_coding_exon_noncoding_region AS
- SELECT feature.feature_id AS three_prime_coding_exon_noncoding_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_coding_exon_noncoding_region'::text);
- --
- -- Name: three_prime_d_heptamer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_d_heptamer AS
- SELECT feature.feature_id AS three_prime_d_heptamer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_D_heptamer'::text);
- --
- -- Name: three_prime_d_nonamer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_d_nonamer AS
- SELECT feature.feature_id AS three_prime_d_nonamer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_D_nonamer'::text);
- --
- -- Name: three_prime_d_recombination_signal_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_d_recombination_signal_sequence AS
- SELECT feature.feature_id AS three_prime_d_recombination_signal_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text);
- --
- -- Name: three_prime_d_spacer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_d_spacer AS
- SELECT feature.feature_id AS three_prime_d_spacer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_D_spacer'::text);
- --
- -- Name: three_prime_est; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_est AS
- SELECT feature.feature_id AS three_prime_est_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_EST'::text);
- --
- -- Name: three_prime_five_prime_overlap; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_five_prime_overlap AS
- SELECT feature.feature_id AS three_prime_five_prime_overlap_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_five_prime_overlap'::text);
- --
- -- Name: three_prime_flanking_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_flanking_region AS
- SELECT feature.feature_id AS three_prime_flanking_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_flanking_region'::text);
- --
- -- Name: three_prime_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_intron AS
- SELECT feature.feature_id AS three_prime_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_intron'::text);
- --
- -- Name: three_prime_ltr; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_ltr AS
- SELECT feature.feature_id AS three_prime_ltr_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_LTR'::text);
- --
- -- Name: three_prime_ltr_component; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_ltr_component AS
- SELECT feature.feature_id AS three_prime_ltr_component_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'R_three_prime_LTR_region'::text) OR ((cvterm.name)::text = 'U3_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'three_prime_LTR_component'::text));
- --
- -- Name: three_prime_noncoding_exon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_noncoding_exon AS
- SELECT feature.feature_id AS three_prime_noncoding_exon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_noncoding_exon'::text);
- --
- -- Name: three_prime_race_clone; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_race_clone AS
- SELECT feature.feature_id AS three_prime_race_clone_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_RACE_clone'::text);
- --
- -- Name: three_prime_recoding_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_recoding_site AS
- SELECT feature.feature_id AS three_prime_recoding_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'three_prime_stem_loop_structure'::text) OR ((cvterm.name)::text = 'flanking_three_prime_quadruplet_recoding_signal'::text)) OR ((cvterm.name)::text = 'three_prime_repeat_recoding_signal'::text)) OR ((cvterm.name)::text = 'distant_three_prime_recoding_signal'::text)) OR ((cvterm.name)::text = 'three_prime_recoding_site'::text));
- --
- -- Name: three_prime_repeat_recoding_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_repeat_recoding_signal AS
- SELECT feature.feature_id AS three_prime_repeat_recoding_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_repeat_recoding_signal'::text);
- --
- -- Name: three_prime_restriction_enzyme_junction; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_restriction_enzyme_junction AS
- SELECT feature.feature_id AS three_prime_restriction_enzyme_junction_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_restriction_enzyme_junction'::text);
- --
- -- Name: three_prime_rst; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_rst AS
- SELECT feature.feature_id AS three_prime_rst_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_RST'::text);
- --
- -- Name: three_prime_stem_loop_structure; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_stem_loop_structure AS
- SELECT feature.feature_id AS three_prime_stem_loop_structure_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_stem_loop_structure'::text);
- --
- -- Name: three_prime_terminal_inverted_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_terminal_inverted_repeat AS
- SELECT feature.feature_id AS three_prime_terminal_inverted_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_terminal_inverted_repeat'::text);
- --
- -- Name: three_prime_three_prime_overlap; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_three_prime_overlap AS
- SELECT feature.feature_id AS three_prime_three_prime_overlap_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_three_prime_overlap'::text);
- --
- -- Name: three_prime_ust; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_ust AS
- SELECT feature.feature_id AS three_prime_ust_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_UST'::text);
- --
- -- Name: three_prime_utr; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_utr AS
- SELECT feature.feature_id AS three_prime_utr_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_UTR'::text);
- --
- -- Name: three_prime_utr_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_utr_intron AS
- SELECT feature.feature_id AS three_prime_utr_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_prime_UTR_intron'::text);
- --
- -- Name: three_prime_utr_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_prime_utr_variant AS
- SELECT feature.feature_id AS three_prime_utr_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = '3_prime_UTR_variant'::text);
- --
- -- Name: three_ten_helix; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_ten_helix AS
- SELECT feature.feature_id AS three_ten_helix_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_ten_helix'::text);
- --
- -- Name: three_three_amino_three_carboxypropyl_uridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_three_amino_three_carboxypropyl_uridine AS
- SELECT feature.feature_id AS three_three_amino_three_carboxypropyl_uridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_three_amino_three_carboxypropyl_uridine'::text);
- --
- -- Name: three_two_prime_o_dimethyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW three_two_prime_o_dimethyluridine AS
- SELECT feature.feature_id AS three_two_prime_o_dimethyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'three_two_prime_O_dimethyluridine'::text);
- --
- -- Name: threed_polypeptide_structure_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW threed_polypeptide_structure_variant AS
- SELECT feature.feature_id AS threed_polypeptide_structure_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'complex_3D_structural_variant'::text) OR ((cvterm.name)::text = 'conformational_change_variant'::text)) OR ((cvterm.name)::text = '3D_polypeptide_structure_variant'::text));
- --
- -- Name: threonine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW threonine AS
- SELECT feature.feature_id AS threonine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'threonine'::text);
- --
- -- Name: threonyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW threonyl_trna AS
- SELECT feature.feature_id AS threonyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'threonyl_tRNA'::text);
- --
- -- Name: tiling_path; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tiling_path AS
- SELECT feature.feature_id AS tiling_path_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tiling_path'::text);
- --
- -- Name: tiling_path_clone; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tiling_path_clone AS
- SELECT feature.feature_id AS tiling_path_clone_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tiling_path_clone'::text);
- --
- -- Name: tiling_path_fragment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tiling_path_fragment AS
- SELECT feature.feature_id AS tiling_path_fragment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'tiling_path_clone'::text) OR ((cvterm.name)::text = 'tiling_path_fragment'::text));
- --
- -- Name: tmrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tmrna AS
- SELECT feature.feature_id AS tmrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tmRNA'::text);
- --
- -- Name: tmrna_acceptor_piece; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tmrna_acceptor_piece AS
- SELECT feature.feature_id AS tmrna_acceptor_piece_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tmRNA_acceptor_piece'::text);
- --
- -- Name: tmrna_coding_piece; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tmrna_coding_piece AS
- SELECT feature.feature_id AS tmrna_coding_piece_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tmRNA_coding_piece'::text);
- --
- -- Name: tmrna_encoding; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tmrna_encoding AS
- SELECT feature.feature_id AS tmrna_encoding_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tmRNA_encoding'::text);
- --
- -- Name: tmrna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tmrna_gene AS
- SELECT feature.feature_id AS tmrna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tmRNA_gene'::text);
- --
- -- Name: tmrna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tmrna_primary_transcript AS
- SELECT feature.feature_id AS tmrna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tmRNA_primary_transcript'::text);
- --
- -- Name: tmrna_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tmrna_region AS
- SELECT feature.feature_id AS tmrna_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'tmRNA_coding_piece'::text) OR ((cvterm.name)::text = 'tmRNA_acceptor_piece'::text)) OR ((cvterm.name)::text = 'tmRNA_region'::text));
- --
- -- Name: tna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tna AS
- SELECT feature.feature_id AS tna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'TNA'::text);
- --
- -- Name: tna_oligo; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tna_oligo AS
- SELECT feature.feature_id AS tna_oligo_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'TNA_oligo'::text);
- --
- -- Name: topologically_defined_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW topologically_defined_region AS
- SELECT feature.feature_id AS topologically_defined_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((cvterm.name)::text = 'flanking_region'::text) OR ((cvterm.name)::text = 'repeat_component'::text)) OR ((cvterm.name)::text = 'transposable_element_flanking_region'::text)) OR ((cvterm.name)::text = 'five_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'three_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon_polymeric_tract'::text)) OR ((cvterm.name)::text = 'LTR_component'::text)) OR ((cvterm.name)::text = 'repeat_fragment'::text)) OR ((cvterm.name)::text = 'transposon_fragment'::text)) OR ((cvterm.name)::text = 'U5_LTR_region'::text)) OR ((cvterm.name)::text = 'R_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_LTR_region'::text)) OR ((cvterm.name)::text = 'three_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'five_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'topologically_defined_region'::text));
- --
- -- Name: topology_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW topology_attribute AS
- SELECT feature.feature_id AS topology_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'linear'::text) OR ((cvterm.name)::text = 'circular'::text)) OR ((cvterm.name)::text = 'topology_attribute'::text));
- --
- -- Name: trans_splice_acceptor_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW trans_splice_acceptor_site AS
- SELECT feature.feature_id AS trans_splice_acceptor_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((cvterm.name)::text = 'SL1_acceptor_site'::text) OR ((cvterm.name)::text = 'SL2_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL3_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL4_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL5_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL6_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL7_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL8_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL9_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL10_accceptor_site'::text)) OR ((cvterm.name)::text = 'SL11_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL12_acceptor_site'::text)) OR ((cvterm.name)::text = 'trans_splice_acceptor_site'::text));
- --
- -- Name: trans_splice_donor_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW trans_splice_donor_site AS
- SELECT feature.feature_id AS trans_splice_donor_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'trans_splice_donor_site'::text);
- --
- -- Name: trans_splice_junction; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW trans_splice_junction AS
- SELECT feature.feature_id AS trans_splice_junction_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'trans_splice_junction'::text);
- --
- -- Name: trans_splice_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW trans_splice_site AS
- SELECT feature.feature_id AS trans_splice_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((cvterm.name)::text = 'trans_splice_acceptor_site'::text) OR ((cvterm.name)::text = 'trans_splice_donor_site'::text)) OR ((cvterm.name)::text = 'SL1_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL2_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL3_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL4_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL5_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL6_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL7_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL8_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL9_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL10_accceptor_site'::text)) OR ((cvterm.name)::text = 'SL11_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL12_acceptor_site'::text)) OR ((cvterm.name)::text = 'trans_splice_site'::text));
- --
- -- Name: trans_spliced; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW trans_spliced AS
- SELECT feature.feature_id AS trans_spliced_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'trans_spliced'::text);
- --
- -- Name: trans_spliced_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW trans_spliced_mrna AS
- SELECT feature.feature_id AS trans_spliced_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'trans_spliced_mRNA'::text);
- --
- -- Name: trans_spliced_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW trans_spliced_transcript AS
- SELECT feature.feature_id AS trans_spliced_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'trans_spliced_mRNA'::text) OR ((cvterm.name)::text = 'trans_spliced_transcript'::text));
- --
- -- Name: transcribed_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcribed_cluster AS
- SELECT feature.feature_id AS transcribed_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'unigene_cluster'::text) OR ((cvterm.name)::text = 'transcribed_cluster'::text));
- --
- -- Name: transcribed_fragment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcribed_fragment AS
- SELECT feature.feature_id AS transcribed_fragment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'transcribed_fragment'::text);
- --
- -- Name: transcribed_spacer_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcribed_spacer_region AS
- SELECT feature.feature_id AS transcribed_spacer_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'internal_transcribed_spacer_region'::text) OR ((cvterm.name)::text = 'external_transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'transcribed_spacer_region'::text));
- --
- -- Name: transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcript AS
- SELECT feature.feature_id AS transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'polycistronic_transcript'::text) OR ((cvterm.name)::text = 'transcript_with_translational_frameshift'::text)) OR ((cvterm.name)::text = 'primary_transcript'::text)) OR ((cvterm.name)::text = 'mature_transcript'::text)) OR ((cvterm.name)::text = 'transcript_bound_by_nucleic_acid'::text)) OR ((cvterm.name)::text = 'transcript_bound_by_protein'::text)) OR ((cvterm.name)::text = 'enzymatic_RNA'::text)) OR ((cvterm.name)::text = 'trans_spliced_transcript'::text)) OR ((cvterm.name)::text = 'monocistronic_transcript'::text)) OR ((cvterm.name)::text = 'aberrant_processed_transcript'::text)) OR ((cvterm.name)::text = 'edited_transcript'::text)) OR ((cvterm.name)::text = 'processed_transcript'::text)) OR ((cvterm.name)::text = 'alternatively_spliced_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'protein_coding_primary_transcript'::text)) OR ((cvterm.name)::text = 'nc_primary_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'monocistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'mini_exon_donor_RNA'::text)) OR ((cvterm.name)::text = 'antisense_primary_transcript'::text)) OR ((cvterm.name)::text = 'capped_primary_transcript'::text)) OR ((cvterm.name)::text = 'pre_edited_mRNA'::text)) OR ((cvterm.name)::text = 'scRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tmRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'SRP_RNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'miRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tasiRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_small_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_large_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'alanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'arginine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'asparagine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'aspartic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'cysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glycine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'histidine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'isoleucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'leucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'lysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methionine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'phenylalanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'proline_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'serine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'threonine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tryptophan_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tyrosine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'valine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'pyrrolysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'selenocysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'U14_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'stRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'mRNA'::text)) OR ((cvterm.name)::text = 'ncRNA'::text)) OR ((cvterm.name)::text = 'mRNA_with_frameshift'::text)) OR ((cvterm.name)::text = 'monocistronic_mRNA'::text)) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'exemplar_mRNA'::text)) OR ((cvterm.name)::text = 'capped_mRNA'::text)) OR ((cvterm.name)::text = 'polyadenylated_mRNA'::text)) OR ((cvterm.name)::text = 'trans_spliced_mRNA'::text)) OR ((cvterm.name)::text = 'edited_mRNA'::text)) OR ((cvterm.name)::text = 'consensus_mRNA'::text)) OR ((cvterm.name)::text = 'recoded_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_2_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_codon_redefinition'::text)) OR ((cvterm.name)::text = 'scRNA'::text)) OR ((cvterm.name)::text = 'rRNA'::text)) OR ((cvterm.name)::text = 'tRNA'::text)) OR ((cvterm.name)::text = 'snRNA'::text)) OR ((cvterm.name)::text = 'snoRNA'::text)) OR ((cvterm.name)::text = 'small_regulatory_ncRNA'::text)) OR ((cvterm.name)::text = 'RNase_MRP_RNA'::text)) OR ((cvterm.name)::text = 'RNase_P_RNA'::text)) OR ((cvterm.name)::text = 'telomerase_RNA'::text)) OR ((cvterm.name)::text = 'vault_RNA'::text)) OR ((cvterm.name)::text = 'Y_RNA'::text)) OR ((cvterm.name)::text = 'rasiRNA'::text)) OR ((cvterm.name)::text = 'SRP_RNA'::text)) OR ((cvterm.name)::text = 'guide_RNA'::text)) OR ((cvterm.name)::text = 'antisense_RNA'::text)) OR ((cvterm.name)::text = 'siRNA'::text)) OR ((cvterm.name)::text = 'stRNA'::text)) OR ((cvterm.name)::text = 'class_II_RNA'::text)) OR ((cvterm.name)::text = 'class_I_RNA'::text)) OR ((cvterm.name)::text = 'piRNA'::text)) OR ((cvterm.name)::text = 'lincRNA'::text)) OR ((cvterm.name)::text = 'tasiRNA'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_RNA'::text)) OR ((cvterm.name)::text = 'small_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'large_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'rRNA_18S'::text)) OR ((cvterm.name)::text = 'rRNA_16S'::text)) OR ((cvterm.name)::text = 'rRNA_5_8S'::text)) OR ((cvterm.name)::text = 'rRNA_5S'::text)) OR ((cvterm.name)::text = 'rRNA_28S'::text)) OR ((cvterm.name)::text = 'rRNA_23S'::text)) OR ((cvterm.name)::text = 'rRNA_25S'::text)) OR ((cvterm.name)::text = 'rRNA_21S'::text)) OR ((cvterm.name)::text = 'alanyl_tRNA'::text)) OR ((cvterm.name)::text = 'asparaginyl_tRNA'::text)) OR ((cvterm.name)::text = 'aspartyl_tRNA'::text)) OR ((cvterm.name)::text = 'cysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutaminyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutamyl_tRNA'::text)) OR ((cvterm.name)::text = 'glycyl_tRNA'::text)) OR ((cvterm.name)::text = 'histidyl_tRNA'::text)) OR ((cvterm.name)::text = 'isoleucyl_tRNA'::text)) OR ((cvterm.name)::text = 'leucyl_tRNA'::text)) OR ((cvterm.name)::text = 'lysyl_tRNA'::text)) OR ((cvterm.name)::text = 'methionyl_tRNA'::text)) OR ((cvterm.name)::text = 'phenylalanyl_tRNA'::text)) OR ((cvterm.name)::text = 'prolyl_tRNA'::text)) OR ((cvterm.name)::text = 'seryl_tRNA'::text)) OR ((cvterm.name)::text = 'threonyl_tRNA'::text)) OR ((cvterm.name)::text = 'tryptophanyl_tRNA'::text)) OR ((cvterm.name)::text = 'tyrosyl_tRNA'::text)) OR ((cvterm.name)::text = 'valyl_tRNA'::text)) OR ((cvterm.name)::text = 'pyrrolysyl_tRNA'::text)) OR ((cvterm.name)::text = 'arginyl_tRNA'::text)) OR ((cvterm.name)::text = 'selenocysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'U1_snRNA'::text)) OR ((cvterm.name)::text = 'U2_snRNA'::text)) OR ((cvterm.name)::text = 'U4_snRNA'::text)) OR ((cvterm.name)::text = 'U4atac_snRNA'::text)) OR ((cvterm.name)::text = 'U5_snRNA'::text)) OR ((cvterm.name)::text = 'U6_snRNA'::text)) OR ((cvterm.name)::text = 'U6atac_snRNA'::text)) OR ((cvterm.name)::text = 'U11_snRNA'::text)) OR ((cvterm.name)::text = 'U12_snRNA'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA'::text)) OR ((cvterm.name)::text = 'U14_snoRNA'::text)) OR ((cvterm.name)::text = 'U3_snoRNA'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'pseudouridylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'miRNA'::text)) OR ((cvterm.name)::text = 'RNA_6S'::text)) OR ((cvterm.name)::text = 'CsrB_RsmB_RNA'::text)) OR ((cvterm.name)::text = 'DsrA_RNA'::text)) OR ((cvterm.name)::text = 'OxyS_RNA'::text)) OR ((cvterm.name)::text = 'RprA_RNA'::text)) OR ((cvterm.name)::text = 'RRE_RNA'::text)) OR ((cvterm.name)::text = 'spot_42_RNA'::text)) OR ((cvterm.name)::text = 'tmRNA'::text)) OR ((cvterm.name)::text = 'GcvB_RNA'::text)) OR ((cvterm.name)::text = 'MicF_RNA'::text)) OR ((cvterm.name)::text = 'ribozyme'::text)) OR ((cvterm.name)::text = 'trans_spliced_mRNA'::text)) OR ((cvterm.name)::text = 'monocistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'monocistronic_mRNA'::text)) OR ((cvterm.name)::text = 'edited_transcript_by_A_to_I_substitution'::text)) OR ((cvterm.name)::text = 'edited_mRNA'::text)) OR ((cvterm.name)::text = 'transcript'::text));
- --
- -- Name: transcript_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcript_attribute AS
- SELECT feature.feature_id AS transcript_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((cvterm.name)::text = 'edited'::text) OR ((cvterm.name)::text = 'capped'::text)) OR ((cvterm.name)::text = 'mRNA_attribute'::text)) OR ((cvterm.name)::text = 'trans_spliced'::text)) OR ((cvterm.name)::text = 'alternatively_spliced'::text)) OR ((cvterm.name)::text = 'monocistronic'::text)) OR ((cvterm.name)::text = 'polycistronic'::text)) OR ((cvterm.name)::text = 'polyadenylated'::text)) OR ((cvterm.name)::text = 'exemplar'::text)) OR ((cvterm.name)::text = 'frameshift'::text)) OR ((cvterm.name)::text = 'recoded'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_framshift'::text)) OR ((cvterm.name)::text = 'codon_redefined'::text)) OR ((cvterm.name)::text = 'recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'minus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'plus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'dicistronic'::text)) OR ((cvterm.name)::text = 'transcript_attribute'::text));
- --
- -- Name: transcript_bound_by_nucleic_acid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcript_bound_by_nucleic_acid AS
- SELECT feature.feature_id AS transcript_bound_by_nucleic_acid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'transcript_bound_by_nucleic_acid'::text);
- --
- -- Name: transcript_bound_by_protein; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcript_bound_by_protein AS
- SELECT feature.feature_id AS transcript_bound_by_protein_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'transcript_bound_by_protein'::text);
- --
- -- Name: transcript_function_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcript_function_variant AS
- SELECT feature.feature_id AS transcript_function_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((cvterm.name)::text = 'level_of_transcript_variant'::text) OR ((cvterm.name)::text = 'transcript_processing_variant'::text)) OR ((cvterm.name)::text = 'transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'transcription_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcript_level_variant'::text)) OR ((cvterm.name)::text = 'increased_transcript_level_variant'::text)) OR ((cvterm.name)::text = 'editing_variant'::text)) OR ((cvterm.name)::text = 'polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'increased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'decreased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'increased_transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'rate_of_transcription_variant'::text)) OR ((cvterm.name)::text = 'increased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'transcript_function_variant'::text));
- --
- -- Name: transcript_processing_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcript_processing_variant AS
- SELECT feature.feature_id AS transcript_processing_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'editing_variant'::text) OR ((cvterm.name)::text = 'polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'increased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'decreased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'transcript_processing_variant'::text));
- --
- -- Name: transcript_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcript_region AS
- SELECT feature.feature_id AS transcript_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'exon'::text) OR ((cvterm.name)::text = 'edited_transcript_feature'::text)) OR ((cvterm.name)::text = 'mature_transcript_region'::text)) OR ((cvterm.name)::text = 'primary_transcript_region'::text)) OR ((cvterm.name)::text = 'exon_region'::text)) OR ((cvterm.name)::text = 'anchor_binding_site'::text)) OR ((cvterm.name)::text = 'coding_exon'::text)) OR ((cvterm.name)::text = 'noncoding_exon'::text)) OR ((cvterm.name)::text = 'interior_exon'::text)) OR ((cvterm.name)::text = 'exon_of_single_exon_gene'::text)) OR ((cvterm.name)::text = 'interior_coding_exon'::text)) OR ((cvterm.name)::text = 'five_prime_coding_exon'::text)) OR ((cvterm.name)::text = 'three_prime_coding_exon'::text)) OR ((cvterm.name)::text = 'three_prime_noncoding_exon'::text)) OR ((cvterm.name)::text = 'five_prime_noncoding_exon'::text)) OR ((cvterm.name)::text = 'pre_edited_region'::text)) OR ((cvterm.name)::text = 'editing_block'::text)) OR ((cvterm.name)::text = 'editing_domain'::text)) OR ((cvterm.name)::text = 'unedited_region'::text)) OR ((cvterm.name)::text = 'mRNA_region'::text)) OR ((cvterm.name)::text = 'tmRNA_region'::text)) OR ((cvterm.name)::text = 'guide_RNA_region'::text)) OR ((cvterm.name)::text = 'tRNA_region'::text)) OR ((cvterm.name)::text = 'riboswitch'::text)) OR ((cvterm.name)::text = 'ribosome_entry_site'::text)) OR ((cvterm.name)::text = 'UTR'::text)) OR ((cvterm.name)::text = 'CDS'::text)) OR ((cvterm.name)::text = 'five_prime_open_reading_frame'::text)) OR ((cvterm.name)::text = 'UTR_region'::text)) OR ((cvterm.name)::text = 'CDS_region'::text)) OR ((cvterm.name)::text = 'translational_frameshift'::text)) OR ((cvterm.name)::text = 'recoding_stimulatory_region'::text)) OR ((cvterm.name)::text = 'internal_ribosome_entry_site'::text)) OR ((cvterm.name)::text = 'Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'kozak_sequence'::text)) OR ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'five_prime_UTR'::text)) OR ((cvterm.name)::text = 'three_prime_UTR'::text)) OR ((cvterm.name)::text = 'internal_UTR'::text)) OR ((cvterm.name)::text = 'untranslated_region_polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'edited_CDS'::text)) OR ((cvterm.name)::text = 'CDS_fragment'::text)) OR ((cvterm.name)::text = 'CDS_independently_known'::text)) OR ((cvterm.name)::text = 'CDS_predicted'::text)) OR ((cvterm.name)::text = 'orphan_CDS'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_sequence_similarity_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_domain_match_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_EST_or_cDNA_data'::text)) OR ((cvterm.name)::text = 'upstream_AUG_codon'::text)) OR ((cvterm.name)::text = 'AU_rich_element'::text)) OR ((cvterm.name)::text = 'Bruno_response_element'::text)) OR ((cvterm.name)::text = 'iron_responsive_element'::text)) OR ((cvterm.name)::text = 'coding_start'::text)) OR ((cvterm.name)::text = 'coding_end'::text)) OR ((cvterm.name)::text = 'codon'::text)) OR ((cvterm.name)::text = 'recoded_codon'::text)) OR ((cvterm.name)::text = 'start_codon'::text)) OR ((cvterm.name)::text = 'stop_codon'::text)) OR ((cvterm.name)::text = 'stop_codon_read_through'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'non_canonical_start_codon'::text)) OR ((cvterm.name)::text = 'four_bp_start_codon'::text)) OR ((cvterm.name)::text = 'CTG_start_codon'::text)) OR ((cvterm.name)::text = 'plus_1_translational_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_translational_frameshift'::text)) OR ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'SECIS_element'::text)) OR ((cvterm.name)::text = 'three_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'five_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'stop_codon_signal'::text)) OR ((cvterm.name)::text = 'three_prime_stem_loop_structure'::text)) OR ((cvterm.name)::text = 'flanking_three_prime_quadruplet_recoding_signal'::text)) OR ((cvterm.name)::text = 'three_prime_repeat_recoding_signal'::text)) OR ((cvterm.name)::text = 'distant_three_prime_recoding_signal'::text)) OR ((cvterm.name)::text = 'UAG_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UAA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UGA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'tmRNA_coding_piece'::text)) OR ((cvterm.name)::text = 'tmRNA_acceptor_piece'::text)) OR ((cvterm.name)::text = 'anchor_region'::text)) OR ((cvterm.name)::text = 'template_region'::text)) OR ((cvterm.name)::text = 'anticodon_loop'::text)) OR ((cvterm.name)::text = 'anticodon'::text)) OR ((cvterm.name)::text = 'CCA_tail'::text)) OR ((cvterm.name)::text = 'DHU_loop'::text)) OR ((cvterm.name)::text = 'T_loop'::text)) OR ((cvterm.name)::text = 'splice_site'::text)) OR ((cvterm.name)::text = 'intron'::text)) OR ((cvterm.name)::text = 'clip'::text)) OR ((cvterm.name)::text = 'TSS'::text)) OR ((cvterm.name)::text = 'transcription_end_site'::text)) OR ((cvterm.name)::text = 'spliced_leader_RNA'::text)) OR ((cvterm.name)::text = 'rRNA_primary_transcript_region'::text)) OR ((cvterm.name)::text = 'spliceosomal_intron_region'::text)) OR ((cvterm.name)::text = 'intron_domain'::text)) OR ((cvterm.name)::text = 'miRNA_primary_transcript_region'::text)) OR ((cvterm.name)::text = 'outron'::text)) OR ((cvterm.name)::text = 'cis_splice_site'::text)) OR ((cvterm.name)::text = 'trans_splice_site'::text)) OR ((cvterm.name)::text = 'cryptic_splice_site'::text)) OR ((cvterm.name)::text = 'five_prime_cis_splice_site'::text)) OR ((cvterm.name)::text = 'three_prime_cis_splice_site'::text)) OR ((cvterm.name)::text = 'recursive_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'trans_splice_acceptor_site'::text)) OR ((cvterm.name)::text = 'trans_splice_donor_site'::text)) OR ((cvterm.name)::text = 'SL1_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL2_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL3_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL4_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL5_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL6_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL7_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL8_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL9_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL10_accceptor_site'::text)) OR ((cvterm.name)::text = 'SL11_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL12_acceptor_site'::text)) OR ((cvterm.name)::text = 'five_prime_intron'::text)) OR ((cvterm.name)::text = 'interior_intron'::text)) OR ((cvterm.name)::text = 'three_prime_intron'::text)) OR ((cvterm.name)::text = 'twintron'::text)) OR ((cvterm.name)::text = 'UTR_intron'::text)) OR ((cvterm.name)::text = 'autocatalytically_spliced_intron'::text)) OR ((cvterm.name)::text = 'spliceosomal_intron'::text)) OR ((cvterm.name)::text = 'mobile_intron'::text)) OR ((cvterm.name)::text = 'endonuclease_spliced_intron'::text)) OR ((cvterm.name)::text = 'five_prime_UTR_intron'::text)) OR ((cvterm.name)::text = 'three_prime_UTR_intron'::text)) OR ((cvterm.name)::text = 'group_I_intron'::text)) OR ((cvterm.name)::text = 'group_II_intron'::text)) OR ((cvterm.name)::text = 'group_III_intron'::text)) OR ((cvterm.name)::text = 'group_IIA_intron'::text)) OR ((cvterm.name)::text = 'group_IIB_intron'::text)) OR ((cvterm.name)::text = 'U2_intron'::text)) OR ((cvterm.name)::text = 'U12_intron'::text)) OR ((cvterm.name)::text = 'archaeal_intron'::text)) OR ((cvterm.name)::text = 'tRNA_intron'::text)) OR ((cvterm.name)::text = 'five_prime_clip'::text)) OR ((cvterm.name)::text = 'three_prime_clip'::text)) OR ((cvterm.name)::text = 'major_TSS'::text)) OR ((cvterm.name)::text = 'minor_TSS'::text)) OR ((cvterm.name)::text = 'transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'internal_transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'external_transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'intronic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'branch_site'::text)) OR ((cvterm.name)::text = 'polypyrimidine_tract'::text)) OR ((cvterm.name)::text = 'internal_guide_sequence'::text)) OR ((cvterm.name)::text = 'mirtron'::text)) OR ((cvterm.name)::text = 'pre_miRNA'::text)) OR ((cvterm.name)::text = 'miRNA_stem'::text)) OR ((cvterm.name)::text = 'miRNA_loop'::text)) OR ((cvterm.name)::text = 'miRNA_antiguide'::text)) OR ((cvterm.name)::text = 'noncoding_region_of_exon'::text)) OR ((cvterm.name)::text = 'coding_region_of_exon'::text)) OR ((cvterm.name)::text = 'three_prime_coding_exon_noncoding_region'::text)) OR ((cvterm.name)::text = 'five_prime_coding_exon_noncoding_region'::text)) OR ((cvterm.name)::text = 'five_prime_coding_exon_coding_region'::text)) OR ((cvterm.name)::text = 'three_prime_coding_exon_coding_region'::text)) OR ((cvterm.name)::text = 'transcript_region'::text));
- --
- -- Name: transcript_secondary_structure_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcript_secondary_structure_variant AS
- SELECT feature.feature_id AS transcript_secondary_structure_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'compensatory_transcript_secondary_structure_variant'::text) OR ((cvterm.name)::text = 'transcript_secondary_structure_variant'::text));
- --
- -- Name: transcript_stability_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcript_stability_variant AS
- SELECT feature.feature_id AS transcript_stability_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'decreased_transcript_stability_variant'::text) OR ((cvterm.name)::text = 'increased_transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'transcript_stability_variant'::text));
- --
- -- Name: transcript_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcript_variant AS
- SELECT feature.feature_id AS transcript_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'complex_change_in_transcript'::text) OR ((cvterm.name)::text = 'transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'nc_transcript_variant'::text)) OR ((cvterm.name)::text = 'NMD_transcript_variant'::text)) OR ((cvterm.name)::text = 'UTR_variant'::text)) OR ((cvterm.name)::text = 'intron_variant'::text)) OR ((cvterm.name)::text = 'exon_variant'::text)) OR ((cvterm.name)::text = 'compensatory_transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'mature_miRNA_variant'::text)) OR ((cvterm.name)::text = '5_prime_UTR_variant'::text)) OR ((cvterm.name)::text = '3_prime_UTR_variant'::text)) OR ((cvterm.name)::text = 'splice_site_variant'::text)) OR ((cvterm.name)::text = 'splice_acceptor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_5th_base_variant'::text)) OR ((cvterm.name)::text = 'coding_sequence_variant'::text)) OR ((cvterm.name)::text = 'non_coding_exon_variant'::text)) OR ((cvterm.name)::text = 'codon_variant'::text)) OR ((cvterm.name)::text = 'frameshift_variant'::text)) OR ((cvterm.name)::text = 'inframe_variant'::text)) OR ((cvterm.name)::text = 'initiator_codon_change'::text)) OR ((cvterm.name)::text = 'non_synonymous_codon'::text)) OR ((cvterm.name)::text = 'synonymous_codon'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_gained'::text)) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text)) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'frame_restoring_variant'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_2_frameshift variant'::text)) OR ((cvterm.name)::text = 'inframe_codon_gain'::text)) OR ((cvterm.name)::text = 'inframe_codon_loss'::text)) OR ((cvterm.name)::text = 'transcript_variant'::text));
- --
- -- Name: transcript_with_translational_frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcript_with_translational_frameshift AS
- SELECT feature.feature_id AS transcript_with_translational_frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'transcript_with_translational_frameshift'::text);
- --
- -- Name: transcription_end_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcription_end_site AS
- SELECT feature.feature_id AS transcription_end_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'transcription_end_site'::text);
- --
- -- Name: transcription_regulatory_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcription_regulatory_region AS
- SELECT feature.feature_id AS transcription_regulatory_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'terminator'::text) OR ((cvterm.name)::text = 'TF_binding_site'::text)) OR ((cvterm.name)::text = 'polyA_signal_sequence'::text)) OR ((cvterm.name)::text = 'gene_group_regulatory_region'::text)) OR ((cvterm.name)::text = 'transcriptional_cis_regulatory_region'::text)) OR ((cvterm.name)::text = 'splicing_regulatory_region'::text)) OR ((cvterm.name)::text = 'cis_regulatory_frameshift_element'::text)) OR ((cvterm.name)::text = 'intronic_regulatory_region'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text)) OR ((cvterm.name)::text = 'eukaryotic_terminator'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'terminator_of_type_2_RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'operator'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'promoter'::text)) OR ((cvterm.name)::text = 'insulator'::text)) OR ((cvterm.name)::text = 'CRM'::text)) OR ((cvterm.name)::text = 'promoter_targeting_sequence'::text)) OR ((cvterm.name)::text = 'ISRE'::text)) OR ((cvterm.name)::text = 'bidirectional_promoter'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_I_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'Phage_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_core_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'locus_control_region'::text)) OR ((cvterm.name)::text = 'enhancer'::text)) OR ((cvterm.name)::text = 'silencer'::text)) OR ((cvterm.name)::text = 'enhancer_bound_by_factor'::text)) OR ((cvterm.name)::text = 'shadow_enhancer'::text)) OR ((cvterm.name)::text = 'splice_enhancer'::text)) OR ((cvterm.name)::text = 'intronic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'exonic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'transcription_regulatory_region'::text));
- --
- -- Name: transcription_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcription_variant AS
- SELECT feature.feature_id AS transcription_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((cvterm.name)::text = 'rate_of_transcription_variant'::text) OR ((cvterm.name)::text = 'increased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'transcription_variant'::text));
- --
- -- Name: transcriptional_cis_regulatory_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcriptional_cis_regulatory_region AS
- SELECT feature.feature_id AS transcriptional_cis_regulatory_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((((((cvterm.name)::text = 'promoter'::text) OR ((cvterm.name)::text = 'insulator'::text)) OR ((cvterm.name)::text = 'CRM'::text)) OR ((cvterm.name)::text = 'promoter_targeting_sequence'::text)) OR ((cvterm.name)::text = 'ISRE'::text)) OR ((cvterm.name)::text = 'bidirectional_promoter'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_I_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'Phage_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_core_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'locus_control_region'::text)) OR ((cvterm.name)::text = 'enhancer'::text)) OR ((cvterm.name)::text = 'silencer'::text)) OR ((cvterm.name)::text = 'enhancer_bound_by_factor'::text)) OR ((cvterm.name)::text = 'shadow_enhancer'::text)) OR ((cvterm.name)::text = 'transcriptional_cis_regulatory_region'::text));
- --
- -- Name: transcriptionally_constitutive; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcriptionally_constitutive AS
- SELECT feature.feature_id AS transcriptionally_constitutive_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'transcriptionally_constitutive'::text);
- --
- -- Name: transcriptionally_induced; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcriptionally_induced AS
- SELECT feature.feature_id AS transcriptionally_induced_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'positively_autoregulated'::text) OR ((cvterm.name)::text = 'transcriptionally_induced'::text));
- --
- -- Name: transcriptionally_regulated; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcriptionally_regulated AS
- SELECT feature.feature_id AS transcriptionally_regulated_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((cvterm.name)::text = 'transcriptionally_constitutive'::text) OR ((cvterm.name)::text = 'transcriptionally_induced'::text)) OR ((cvterm.name)::text = 'transcriptionally_repressed'::text)) OR ((cvterm.name)::text = 'autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'silenced'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'transcriptionally_regulated'::text));
- --
- -- Name: transcriptionally_repressed; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transcriptionally_repressed AS
- SELECT feature.feature_id AS transcriptionally_repressed_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((cvterm.name)::text = 'negatively_autoregulated'::text) OR ((cvterm.name)::text = 'silenced'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'transcriptionally_repressed'::text));
- --
- -- Name: transgene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transgene AS
- SELECT feature.feature_id AS transgene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'floxed_gene'::text) OR ((cvterm.name)::text = 'transgene'::text));
- --
- -- Name: transgenic; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transgenic AS
- SELECT feature.feature_id AS transgenic_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'transgenic'::text);
- --
- -- Name: transgenic_insertion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transgenic_insertion AS
- SELECT feature.feature_id AS transgenic_insertion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'transgenic_insertion'::text);
- --
- -- Name: transgenic_transposable_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transgenic_transposable_element AS
- SELECT feature.feature_id AS transgenic_transposable_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'transgenic_transposable_element'::text);
- --
- -- Name: transit_peptide; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transit_peptide AS
- SELECT feature.feature_id AS transit_peptide_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'transit_peptide'::text);
- --
- -- Name: transition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transition AS
- SELECT feature.feature_id AS transition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'pyrimidine_transition'::text) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'transition'::text));
- --
- -- Name: translated_nucleotide_match; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW translated_nucleotide_match AS
- SELECT feature.feature_id AS translated_nucleotide_match_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'translated_nucleotide_match'::text);
- --
- -- Name: translation_regulatory_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW translation_regulatory_region AS
- SELECT feature.feature_id AS translation_regulatory_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'attenuator'::text) OR ((cvterm.name)::text = 'translation_regulatory_region'::text));
- --
- -- Name: translational_frameshift; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW translational_frameshift AS
- SELECT feature.feature_id AS translational_frameshift_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'plus_1_translational_frameshift'::text) OR ((cvterm.name)::text = 'plus_2_translational_frameshift'::text)) OR ((cvterm.name)::text = 'translational_frameshift'::text));
- --
- -- Name: translational_product_function_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW translational_product_function_variant AS
- SELECT feature.feature_id AS translational_product_function_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((cvterm.name)::text = 'translational_product_level_variant'::text) OR ((cvterm.name)::text = 'polypeptide_function_variant'::text)) OR ((cvterm.name)::text = 'decreased_translational_product_level'::text)) OR ((cvterm.name)::text = 'increased_translational_product_level'::text)) OR ((cvterm.name)::text = 'polypeptide_gain_of_function_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_localization_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_loss_of_function_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_post_translational_processing_variant'::text)) OR ((cvterm.name)::text = 'inactive_ligand_binding_site'::text)) OR ((cvterm.name)::text = 'polypeptide_partial_loss_of_function'::text)) OR ((cvterm.name)::text = 'inactive_catalytic_site'::text)) OR ((cvterm.name)::text = 'translational_product_function_variant'::text));
- --
- -- Name: translational_product_level_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW translational_product_level_variant AS
- SELECT feature.feature_id AS translational_product_level_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'decreased_translational_product_level'::text) OR ((cvterm.name)::text = 'increased_translational_product_level'::text)) OR ((cvterm.name)::text = 'translational_product_level_variant'::text));
- --
- -- Name: translational_product_structure_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW translational_product_structure_variant AS
- SELECT feature.feature_id AS translational_product_structure_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((cvterm.name)::text = '3D_polypeptide_structure_variant'::text) OR ((cvterm.name)::text = 'complex_change_of_translational_product_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_sequence_variant'::text)) OR ((cvterm.name)::text = 'complex_3D_structural_variant'::text)) OR ((cvterm.name)::text = 'conformational_change_variant'::text)) OR ((cvterm.name)::text = 'amino_acid_deletion'::text)) OR ((cvterm.name)::text = 'amino_acid_insertion'::text)) OR ((cvterm.name)::text = 'amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide'::text)) OR ((cvterm.name)::text = 'polypeptide_fusion'::text)) OR ((cvterm.name)::text = 'polypeptide_truncation'::text)) OR ((cvterm.name)::text = 'conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'non_conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'translational_product_structure_variant'::text));
- --
- -- Name: translationally_frameshifted; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW translationally_frameshifted AS
- SELECT feature.feature_id AS translationally_frameshifted_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'minus_1_translationally_frameshifted'::text) OR ((cvterm.name)::text = 'plus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'translationally_frameshifted'::text));
- --
- -- Name: translationally_regulated; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW translationally_regulated AS
- SELECT feature.feature_id AS translationally_regulated_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'translationally_regulated'::text);
- --
- -- Name: translationally_regulated_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW translationally_regulated_gene AS
- SELECT feature.feature_id AS translationally_regulated_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'translationally_regulated_gene'::text);
- --
- -- Name: translocation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW translocation AS
- SELECT feature.feature_id AS translocation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'translocation'::text);
- --
- -- Name: translocation_breakpoint; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW translocation_breakpoint AS
- SELECT feature.feature_id AS translocation_breakpoint_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'translocation_breakpoint'::text);
- --
- -- Name: translocation_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW translocation_element AS
- SELECT feature.feature_id AS translocation_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'translocation_element'::text);
- --
- -- Name: translocaton_attribute; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW translocaton_attribute AS
- SELECT feature.feature_id AS translocaton_attribute_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'reciprocal'::text) OR ((cvterm.name)::text = 'insertional'::text)) OR ((cvterm.name)::text = 'translocaton_attribute'::text));
- --
- -- Name: transmembrane_polypeptide_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transmembrane_polypeptide_region AS
- SELECT feature.feature_id AS transmembrane_polypeptide_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'transmembrane_polypeptide_region'::text);
- --
- -- Name: transposable_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transposable_element AS
- SELECT feature.feature_id AS transposable_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((cvterm.name)::text = 'retrotransposon'::text) OR ((cvterm.name)::text = 'DNA_transposon'::text)) OR ((cvterm.name)::text = 'foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'transgenic_transposable_element'::text)) OR ((cvterm.name)::text = 'natural_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'nested_transposon'::text)) OR ((cvterm.name)::text = 'LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'LINE_element'::text)) OR ((cvterm.name)::text = 'SINE_element'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat_element'::text)) OR ((cvterm.name)::text = 'foldback_element'::text)) OR ((cvterm.name)::text = 'conjugative_transposon'::text)) OR ((cvterm.name)::text = 'helitron'::text)) OR ((cvterm.name)::text = 'p_element'::text)) OR ((cvterm.name)::text = 'MITE'::text)) OR ((cvterm.name)::text = 'insertion_sequence'::text)) OR ((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'transposable_element'::text));
- --
- -- Name: transposable_element_flanking_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transposable_element_flanking_region AS
- SELECT feature.feature_id AS transposable_element_flanking_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'transposable_element_flanking_region'::text);
- --
- -- Name: transposable_element_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transposable_element_gene AS
- SELECT feature.feature_id AS transposable_element_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text) OR ((cvterm.name)::text = 'transposable_element_gene'::text));
- --
- -- Name: transposable_element_insertion_site; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transposable_element_insertion_site AS
- SELECT feature.feature_id AS transposable_element_insertion_site_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'transposable_element_insertion_site'::text);
- --
- -- Name: transposon_fragment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transposon_fragment AS
- SELECT feature.feature_id AS transposon_fragment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'transposon_fragment'::text);
- --
- -- Name: transversion; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW transversion AS
- SELECT feature.feature_id AS transversion_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'transversion'::text));
- --
- -- Name: trinuc_repeat_microsat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW trinuc_repeat_microsat AS
- SELECT feature.feature_id AS trinuc_repeat_microsat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'trinucleotide_repeat_microsatellite_feature'::text);
- --
- -- Name: trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW trna AS
- SELECT feature.feature_id AS trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((cvterm.name)::text = 'alanyl_tRNA'::text) OR ((cvterm.name)::text = 'asparaginyl_tRNA'::text)) OR ((cvterm.name)::text = 'aspartyl_tRNA'::text)) OR ((cvterm.name)::text = 'cysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutaminyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutamyl_tRNA'::text)) OR ((cvterm.name)::text = 'glycyl_tRNA'::text)) OR ((cvterm.name)::text = 'histidyl_tRNA'::text)) OR ((cvterm.name)::text = 'isoleucyl_tRNA'::text)) OR ((cvterm.name)::text = 'leucyl_tRNA'::text)) OR ((cvterm.name)::text = 'lysyl_tRNA'::text)) OR ((cvterm.name)::text = 'methionyl_tRNA'::text)) OR ((cvterm.name)::text = 'phenylalanyl_tRNA'::text)) OR ((cvterm.name)::text = 'prolyl_tRNA'::text)) OR ((cvterm.name)::text = 'seryl_tRNA'::text)) OR ((cvterm.name)::text = 'threonyl_tRNA'::text)) OR ((cvterm.name)::text = 'tryptophanyl_tRNA'::text)) OR ((cvterm.name)::text = 'tyrosyl_tRNA'::text)) OR ((cvterm.name)::text = 'valyl_tRNA'::text)) OR ((cvterm.name)::text = 'pyrrolysyl_tRNA'::text)) OR ((cvterm.name)::text = 'arginyl_tRNA'::text)) OR ((cvterm.name)::text = 'selenocysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'tRNA'::text));
- --
- -- Name: trna_encoding; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW trna_encoding AS
- SELECT feature.feature_id AS trna_encoding_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tRNA_encoding'::text);
- --
- -- Name: trna_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW trna_gene AS
- SELECT feature.feature_id AS trna_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tRNA_gene'::text);
- --
- -- Name: trna_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW trna_intron AS
- SELECT feature.feature_id AS trna_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tRNA_intron'::text);
- --
- -- Name: trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW trna_primary_transcript AS
- SELECT feature.feature_id AS trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((((cvterm.name)::text = 'alanine_tRNA_primary_transcript'::text) OR ((cvterm.name)::text = 'arginine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'asparagine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'aspartic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'cysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glycine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'histidine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'isoleucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'leucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'lysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methionine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'phenylalanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'proline_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'serine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'threonine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tryptophan_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tyrosine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'valine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'pyrrolysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'selenocysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tRNA_primary_transcript'::text));
- --
- -- Name: trna_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW trna_region AS
- SELECT feature.feature_id AS trna_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'anticodon_loop'::text) OR ((cvterm.name)::text = 'anticodon'::text)) OR ((cvterm.name)::text = 'CCA_tail'::text)) OR ((cvterm.name)::text = 'DHU_loop'::text)) OR ((cvterm.name)::text = 'T_loop'::text)) OR ((cvterm.name)::text = 'tRNA_region'::text));
- --
- -- Name: try_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW try_trna_primary_transcript AS
- SELECT feature.feature_id AS try_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tryptophan_tRNA_primary_transcript'::text);
- --
- -- Name: tryptophan; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tryptophan AS
- SELECT feature.feature_id AS tryptophan_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tryptophan'::text);
- --
- -- Name: tryptophanyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tryptophanyl_trna AS
- SELECT feature.feature_id AS tryptophanyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tryptophanyl_tRNA'::text);
- --
- -- Name: tss; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tss AS
- SELECT feature.feature_id AS tss_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'major_TSS'::text) OR ((cvterm.name)::text = 'minor_TSS'::text)) OR ((cvterm.name)::text = 'TSS'::text));
- --
- -- Name: tss_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tss_region AS
- SELECT feature.feature_id AS tss_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'TSS_region'::text);
- --
- -- Name: twintron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW twintron AS
- SELECT feature.feature_id AS twintron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'twintron'::text);
- --
- -- Name: two_methyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_methyladenosine AS
- SELECT feature.feature_id AS two_methyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_methyladenosine'::text);
- --
- -- Name: two_methylthio_n6_cis_hydroxyisopentenyl_adenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_methylthio_n6_cis_hydroxyisopentenyl_adenosine AS
- SELECT feature.feature_id AS two_methylthio_n6_cis_hydroxyisopentenyl_adenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine'::text);
- --
- -- Name: two_methylthio_n6_hydroxynorvalyl_carbamoyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_methylthio_n6_hydroxynorvalyl_carbamoyladenosine AS
- SELECT feature.feature_id AS two_methylthio_n6_hydroxynorvalyl_carbamoyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine'::text);
- --
- -- Name: two_methylthio_n6_isopentenyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_methylthio_n6_isopentenyladenosine AS
- SELECT feature.feature_id AS two_methylthio_n6_isopentenyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_methylthio_N6_isopentenyladenosine'::text);
- --
- -- Name: two_methylthio_n6_methyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_methylthio_n6_methyladenosine AS
- SELECT feature.feature_id AS two_methylthio_n6_methyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_methylthio_N6_methyladenosine'::text);
- --
- -- Name: two_methylthio_n6_threonyl_carbamoyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_methylthio_n6_threonyl_carbamoyladenosine AS
- SELECT feature.feature_id AS two_methylthio_n6_threonyl_carbamoyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_methylthio_N6_threonyl_carbamoyladenosine'::text);
- --
- -- Name: two_prime_o_methyladenosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_prime_o_methyladenosine AS
- SELECT feature.feature_id AS two_prime_o_methyladenosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_prime_O_methyladenosine'::text);
- --
- -- Name: two_prime_o_methylcytidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_prime_o_methylcytidine AS
- SELECT feature.feature_id AS two_prime_o_methylcytidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_prime_O_methylcytidine'::text);
- --
- -- Name: two_prime_o_methylguanosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_prime_o_methylguanosine AS
- SELECT feature.feature_id AS two_prime_o_methylguanosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_prime_O_methylguanosine'::text);
- --
- -- Name: two_prime_o_methylinosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_prime_o_methylinosine AS
- SELECT feature.feature_id AS two_prime_o_methylinosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_prime_O_methylinosine'::text);
- --
- -- Name: two_prime_o_methylpseudouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_prime_o_methylpseudouridine AS
- SELECT feature.feature_id AS two_prime_o_methylpseudouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_prime_O_methylpseudouridine'::text);
- --
- -- Name: two_prime_o_methyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_prime_o_methyluridine AS
- SELECT feature.feature_id AS two_prime_o_methyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_prime_O_methyluridine'::text);
- --
- -- Name: two_prime_o_riboa_phosphate; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_prime_o_riboa_phosphate AS
- SELECT feature.feature_id AS two_prime_o_riboa_phosphate_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_prime_O_ribosyladenosine_phosphate'::text);
- --
- -- Name: two_prime_o_ribosylguanosine_phosphate; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_prime_o_ribosylguanosine_phosphate AS
- SELECT feature.feature_id AS two_prime_o_ribosylguanosine_phosphate_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_prime_O_ribosylguanosine_phosphate'::text);
- --
- -- Name: two_thio_two_prime_o_methyluridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_thio_two_prime_o_methyluridine AS
- SELECT feature.feature_id AS two_thio_two_prime_o_methyluridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_thio_two_prime_O_methyluridine'::text);
- --
- -- Name: two_thiocytidine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_thiocytidine AS
- SELECT feature.feature_id AS two_thiocytidine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_thiocytidine'::text);
- --
- -- Name: two_thiouridine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW two_thiouridine AS
- SELECT feature.feature_id AS two_thiouridine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'two_thiouridine'::text);
- --
- -- Name: twokb_upstream_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW twokb_upstream_variant AS
- SELECT feature.feature_id AS twokb_upstream_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = '2KB_upstream_variant'::text);
- --
- -- Name: tyrosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tyrosine AS
- SELECT feature.feature_id AS tyrosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tyrosine'::text);
- --
- -- Name: tyrosine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tyrosine_trna_primary_transcript AS
- SELECT feature.feature_id AS tyrosine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tyrosine_tRNA_primary_transcript'::text);
- --
- -- Name: tyrosyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW tyrosyl_trna AS
- SELECT feature.feature_id AS tyrosyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'tyrosyl_tRNA'::text);
- --
- -- Name: u11_snrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u11_snrna AS
- SELECT feature.feature_id AS u11_snrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U11_snRNA'::text);
- --
- -- Name: u12_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u12_intron AS
- SELECT feature.feature_id AS u12_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U12_intron'::text);
- --
- -- Name: u12_snrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u12_snrna AS
- SELECT feature.feature_id AS u12_snrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U12_snRNA'::text);
- --
- -- Name: u14_snorna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u14_snorna AS
- SELECT feature.feature_id AS u14_snorna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U14_snoRNA'::text);
- --
- -- Name: u14_snorna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u14_snorna_primary_transcript AS
- SELECT feature.feature_id AS u14_snorna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U14_snoRNA_primary_transcript'::text);
- --
- -- Name: u1_snrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u1_snrna AS
- SELECT feature.feature_id AS u1_snrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U1_snRNA'::text);
- --
- -- Name: u2_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u2_intron AS
- SELECT feature.feature_id AS u2_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U2_intron'::text);
- --
- -- Name: u2_snrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u2_snrna AS
- SELECT feature.feature_id AS u2_snrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U2_snRNA'::text);
- --
- -- Name: u3_five_prime_ltr_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u3_five_prime_ltr_region AS
- SELECT feature.feature_id AS u3_five_prime_ltr_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text);
- --
- -- Name: u3_ltr_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u3_ltr_region AS
- SELECT feature.feature_id AS u3_ltr_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'U3_five_prime_LTR_region'::text) OR ((cvterm.name)::text = 'U3_LTR_region'::text));
- --
- -- Name: u3_snorna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u3_snorna AS
- SELECT feature.feature_id AS u3_snorna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U3_snoRNA'::text);
- --
- -- Name: u3_three_prime_ltr_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u3_three_prime_ltr_region AS
- SELECT feature.feature_id AS u3_three_prime_ltr_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U3_three_prime_LTR_region'::text);
- --
- -- Name: u4_snrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u4_snrna AS
- SELECT feature.feature_id AS u4_snrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U4_snRNA'::text);
- --
- -- Name: u4atac_snrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u4atac_snrna AS
- SELECT feature.feature_id AS u4atac_snrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U4atac_snRNA'::text);
- --
- -- Name: u5_five_prime_ltr_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u5_five_prime_ltr_region AS
- SELECT feature.feature_id AS u5_five_prime_ltr_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text);
- --
- -- Name: u5_ltr_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u5_ltr_region AS
- SELECT feature.feature_id AS u5_ltr_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'U5_five_prime_LTR_region'::text) OR ((cvterm.name)::text = 'U5_LTR_region'::text));
- --
- -- Name: u5_snrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u5_snrna AS
- SELECT feature.feature_id AS u5_snrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U5_snRNA'::text);
- --
- -- Name: u5_three_prime_ltr_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u5_three_prime_ltr_region AS
- SELECT feature.feature_id AS u5_three_prime_ltr_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U5_three_prime_LTR_region'::text);
- --
- -- Name: u6_snrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u6_snrna AS
- SELECT feature.feature_id AS u6_snrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U6_snRNA'::text);
- --
- -- Name: u6atac_snrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u6atac_snrna AS
- SELECT feature.feature_id AS u6atac_snrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U6atac_snRNA'::text);
- --
- -- Name: u_box; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW u_box AS
- SELECT feature.feature_id AS u_box_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'U_box'::text);
- --
- -- Name: uaa_stop_codon_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW uaa_stop_codon_signal AS
- SELECT feature.feature_id AS uaa_stop_codon_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'UAA_stop_codon_signal'::text);
- --
- -- Name: uag_stop_codon_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW uag_stop_codon_signal AS
- SELECT feature.feature_id AS uag_stop_codon_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'UAG_stop_codon_signal'::text);
- --
- -- Name: uga_stop_codon_signal; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW uga_stop_codon_signal AS
- SELECT feature.feature_id AS uga_stop_codon_signal_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'UGA_stop_codon_signal'::text);
- --
- -- Name: ultracontig; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ultracontig AS
- SELECT feature.feature_id AS ultracontig_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'ultracontig'::text);
- --
- -- Name: uncharacterised_chromosomal_mutation; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW uncharacterised_chromosomal_mutation AS
- SELECT feature.feature_id AS uncharacterised_chromosomal_mutation_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'partially_characterised_chromosomal_mutation'::text) OR ((cvterm.name)::text = 'uncharacterised_chromosomal_mutation'::text));
- --
- -- Name: undermodified_hydroxywybutosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW undermodified_hydroxywybutosine AS
- SELECT feature.feature_id AS undermodified_hydroxywybutosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'undermodified_hydroxywybutosine'::text);
- --
- -- Name: unedited_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW unedited_region AS
- SELECT feature.feature_id AS unedited_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'unedited_region'::text);
- --
- -- Name: unigene_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW unigene_cluster AS
- SELECT feature.feature_id AS unigene_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'unigene_cluster'::text);
- --
- -- Name: uninvert_insert_dup; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW uninvert_insert_dup AS
- SELECT feature.feature_id AS uninvert_insert_dup_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'uninverted_insertional_duplication'::text);
- --
- -- Name: uninvert_inter_transposition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW uninvert_inter_transposition AS
- SELECT feature.feature_id AS uninvert_inter_transposition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text);
- --
- -- Name: uninvert_intra_transposition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW uninvert_intra_transposition AS
- SELECT feature.feature_id AS uninvert_intra_transposition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text);
- --
- -- Name: unique_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW unique_variant AS
- SELECT feature.feature_id AS unique_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'unique_variant'::text);
- --
- -- Name: unitary_pseudogene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW unitary_pseudogene AS
- SELECT feature.feature_id AS unitary_pseudogene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'unitary_pseudogene'::text);
- --
- -- Name: unorient_insert_dup; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW unorient_insert_dup AS
- SELECT feature.feature_id AS unorient_insert_dup_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'unoriented_insertional_duplication'::text);
- --
- -- Name: unoriented_interchromosomal_transposition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW unoriented_interchromosomal_transposition AS
- SELECT feature.feature_id AS unoriented_interchromosomal_transposition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text);
- --
- -- Name: unoriented_intrachromosomal_transposition; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW unoriented_intrachromosomal_transposition AS
- SELECT feature.feature_id AS unoriented_intrachromosomal_transposition_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text);
- --
- -- Name: untranslated_region_polycistronic_mrna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW untranslated_region_polycistronic_mrna AS
- SELECT feature.feature_id AS untranslated_region_polycistronic_mrna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'untranslated_region_polycistronic_mRNA'::text);
- --
- -- Name: upd; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW upd AS
- SELECT feature.feature_id AS upd_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'maternal_uniparental_disomy'::text) OR ((cvterm.name)::text = 'paternal_uniparental_disomy'::text)) OR ((cvterm.name)::text = 'UPD'::text));
- --
- -- Name: upstream_aug_codon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW upstream_aug_codon AS
- SELECT feature.feature_id AS upstream_aug_codon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'upstream_AUG_codon'::text);
- --
- -- Name: upstream_gene_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW upstream_gene_variant AS
- SELECT feature.feature_id AS upstream_gene_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = '5KB_upstream_variant'::text) OR ((cvterm.name)::text = '2KB_upstream_variant'::text)) OR ((cvterm.name)::text = 'upstream_gene_variant'::text));
- --
- -- Name: uridine_five_oxyacetic_acid; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW uridine_five_oxyacetic_acid AS
- SELECT feature.feature_id AS uridine_five_oxyacetic_acid_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'uridine_five_oxyacetic_acid'::text);
- --
- -- Name: uridine_five_oxyacetic_acid_methyl_ester; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW uridine_five_oxyacetic_acid_methyl_ester AS
- SELECT feature.feature_id AS uridine_five_oxyacetic_acid_methyl_ester_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'uridine_five_oxyacetic_acid_methyl_ester'::text);
- --
- -- Name: ust; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ust AS
- SELECT feature.feature_id AS ust_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'three_prime_UST'::text) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'UST'::text));
- --
- -- Name: ust_match; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW ust_match AS
- SELECT feature.feature_id AS ust_match_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'UST_match'::text);
- --
- -- Name: utr; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW utr AS
- SELECT feature.feature_id AS utr_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'five_prime_UTR'::text) OR ((cvterm.name)::text = 'three_prime_UTR'::text)) OR ((cvterm.name)::text = 'internal_UTR'::text)) OR ((cvterm.name)::text = 'untranslated_region_polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'UTR'::text));
- --
- -- Name: utr_intron; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW utr_intron AS
- SELECT feature.feature_id AS utr_intron_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = 'five_prime_UTR_intron'::text) OR ((cvterm.name)::text = 'three_prime_UTR_intron'::text)) OR ((cvterm.name)::text = 'UTR_intron'::text));
- --
- -- Name: utr_region; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW utr_region AS
- SELECT feature.feature_id AS utr_region_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'upstream_AUG_codon'::text) OR ((cvterm.name)::text = 'AU_rich_element'::text)) OR ((cvterm.name)::text = 'Bruno_response_element'::text)) OR ((cvterm.name)::text = 'iron_responsive_element'::text)) OR ((cvterm.name)::text = 'UTR_region'::text));
- --
- -- Name: utr_variant; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW utr_variant AS
- SELECT feature.feature_id AS utr_variant_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((cvterm.name)::text = '5_prime_UTR_variant'::text) OR ((cvterm.name)::text = '3_prime_UTR_variant'::text)) OR ((cvterm.name)::text = 'UTR_variant'::text));
- --
- -- Name: v_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_cluster AS
- SELECT feature.feature_id AS v_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_cluster'::text);
- --
- -- Name: v_d_dj_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_d_dj_c_cluster AS
- SELECT feature.feature_id AS v_d_dj_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text);
- --
- -- Name: v_d_dj_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_d_dj_cluster AS
- SELECT feature.feature_id AS v_d_dj_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_D_DJ_cluster'::text);
- --
- -- Name: v_d_dj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_d_dj_j_c_cluster AS
- SELECT feature.feature_id AS v_d_dj_j_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text);
- --
- -- Name: v_d_dj_j_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_d_dj_j_cluster AS
- SELECT feature.feature_id AS v_d_dj_j_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text);
- --
- -- Name: v_d_j_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_d_j_c_cluster AS
- SELECT feature.feature_id AS v_d_j_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_D_J_C_cluster'::text);
- --
- -- Name: v_d_j_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_d_j_cluster AS
- SELECT feature.feature_id AS v_d_j_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_D_J_cluster'::text);
- --
- -- Name: v_dj_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_dj_c_cluster AS
- SELECT feature.feature_id AS v_dj_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_DJ_C_cluster'::text);
- --
- -- Name: v_dj_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_dj_cluster AS
- SELECT feature.feature_id AS v_dj_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_DJ_cluster'::text);
- --
- -- Name: v_dj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_dj_j_c_cluster AS
- SELECT feature.feature_id AS v_dj_j_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text);
- --
- -- Name: v_dj_j_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_dj_j_cluster AS
- SELECT feature.feature_id AS v_dj_j_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_DJ_J_cluster'::text);
- --
- -- Name: v_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_gene AS
- SELECT feature.feature_id AS v_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_gene'::text);
- --
- -- Name: v_gene_recombination_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_gene_recombination_feature AS
- SELECT feature.feature_id AS v_gene_recombination_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_gene_recombination_feature'::text);
- --
- -- Name: v_heptamer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_heptamer AS
- SELECT feature.feature_id AS v_heptamer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_heptamer'::text);
- --
- -- Name: v_j_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_j_c_cluster AS
- SELECT feature.feature_id AS v_j_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_J_C_cluster'::text);
- --
- -- Name: v_j_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_j_cluster AS
- SELECT feature.feature_id AS v_j_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_J_cluster'::text);
- --
- -- Name: v_nonamer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_nonamer AS
- SELECT feature.feature_id AS v_nonamer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_nonamer'::text);
- --
- -- Name: v_spacer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_spacer AS
- SELECT feature.feature_id AS v_spacer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_spacer'::text);
- --
- -- Name: v_vdj_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_vdj_c_cluster AS
- SELECT feature.feature_id AS v_vdj_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_VDJ_C_cluster'::text);
- --
- -- Name: v_vdj_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_vdj_cluster AS
- SELECT feature.feature_id AS v_vdj_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_VDJ_cluster'::text);
- --
- -- Name: v_vdj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_vdj_j_c_cluster AS
- SELECT feature.feature_id AS v_vdj_j_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text);
- --
- -- Name: v_vdj_j_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_vdj_j_cluster AS
- SELECT feature.feature_id AS v_vdj_j_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_VDJ_J_cluster'::text);
- --
- -- Name: v_vj_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_vj_c_cluster AS
- SELECT feature.feature_id AS v_vj_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_VJ_C_cluster'::text);
- --
- -- Name: v_vj_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_vj_cluster AS
- SELECT feature.feature_id AS v_vj_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_VJ_cluster'::text);
- --
- -- Name: v_vj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_vj_j_c_cluster AS
- SELECT feature.feature_id AS v_vj_j_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text);
- --
- -- Name: v_vj_j_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW v_vj_j_cluster AS
- SELECT feature.feature_id AS v_vj_j_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'V_VJ_J_cluster'::text);
- --
- -- Name: validated; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW validated AS
- SELECT feature.feature_id AS validated_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'experimentally_determined'::text) OR ((cvterm.name)::text = 'validated'::text));
- --
- -- Name: validated_cdna_clone; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW validated_cdna_clone AS
- SELECT feature.feature_id AS validated_cdna_clone_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'validated_cDNA_clone'::text);
- --
- -- Name: valine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW valine AS
- SELECT feature.feature_id AS valine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'valine'::text);
- --
- -- Name: valine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW valine_trna_primary_transcript AS
- SELECT feature.feature_id AS valine_trna_primary_transcript_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'valine_tRNA_primary_transcript'::text);
- --
- -- Name: valyl_trna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW valyl_trna AS
- SELECT feature.feature_id AS valyl_trna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'valyl_tRNA'::text);
- --
- -- Name: variant_collection; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW variant_collection AS
- SELECT feature.feature_id AS variant_collection_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'chromosome_variation'::text) OR ((cvterm.name)::text = 'allele'::text)) OR ((cvterm.name)::text = 'haplotype'::text)) OR ((cvterm.name)::text = 'genotype'::text)) OR ((cvterm.name)::text = 'diplotype'::text)) OR ((cvterm.name)::text = 'assortment_derived_variation'::text)) OR ((cvterm.name)::text = 'chromosome_number_variation'::text)) OR ((cvterm.name)::text = 'chromosome_structure_variation'::text)) OR ((cvterm.name)::text = 'assortment_derived_duplication'::text)) OR ((cvterm.name)::text = 'assortment_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'assortment_derived_deficiency'::text)) OR ((cvterm.name)::text = 'assortment_derived_aneuploid'::text)) OR ((cvterm.name)::text = 'aneuploid'::text)) OR ((cvterm.name)::text = 'polyploid'::text)) OR ((cvterm.name)::text = 'hyperploid'::text)) OR ((cvterm.name)::text = 'hypoploid'::text)) OR ((cvterm.name)::text = 'autopolyploid'::text)) OR ((cvterm.name)::text = 'allopolyploid'::text)) OR ((cvterm.name)::text = 'free_chromosome_arm'::text)) OR ((cvterm.name)::text = 'chromosomal_transposition'::text)) OR ((cvterm.name)::text = 'aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'intrachromosomal_mutation'::text)) OR ((cvterm.name)::text = 'interchromosomal_mutation'::text)) OR ((cvterm.name)::text = 'chromosomal_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome'::text)) OR ((cvterm.name)::text = 'autosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'complex_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'uncharacterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'chromosomal_deletion'::text)) OR ((cvterm.name)::text = 'chromosomal_inversion'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'ring_chromosome'::text)) OR ((cvterm.name)::text = 'chromosome_fission'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_deficiency'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'pericentric_inversion'::text)) OR ((cvterm.name)::text = 'paracentric_inversion'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'translocation_element'::text)) OR ((cvterm.name)::text = 'Robertsonian_fusion'::text)) OR ((cvterm.name)::text = 'reciprocal_chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'cyclic_translocation'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_duplication'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'free_duplication'::text)) OR ((cvterm.name)::text = 'insertional_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'uninverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'inverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'unoriented_insertional_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome_arm'::text)) OR ((cvterm.name)::text = 'homo_compound_chromosome'::text)) OR ((cvterm.name)::text = 'hetero_compound_chromosome'::text)) OR ((cvterm.name)::text = 'dexstrosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'laevosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'partially_characterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'polymorphic_sequence_variant'::text)) OR ((cvterm.name)::text = 'variant_collection'::text));
- --
- -- Name: variant_frequency; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW variant_frequency AS
- SELECT feature.feature_id AS variant_frequency_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'unique_variant'::text) OR ((cvterm.name)::text = 'rare_variant'::text)) OR ((cvterm.name)::text = 'polymorphic_variant'::text)) OR ((cvterm.name)::text = 'common_variant'::text)) OR ((cvterm.name)::text = 'fixed_variant'::text)) OR ((cvterm.name)::text = 'variant_frequency'::text));
- --
- -- Name: variant_genome; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW variant_genome AS
- SELECT feature.feature_id AS variant_genome_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((cvterm.name)::text = 'chromosomally_aberrant_genome'::text) OR ((cvterm.name)::text = 'variant_genome'::text));
- --
- -- Name: variant_origin; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW variant_origin AS
- SELECT feature.feature_id AS variant_origin_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'maternal_variant'::text) OR ((cvterm.name)::text = 'paternal_variant'::text)) OR ((cvterm.name)::text = 'somatic_variant'::text)) OR ((cvterm.name)::text = 'germline_variant'::text)) OR ((cvterm.name)::text = 'pedigree_specific_variant'::text)) OR ((cvterm.name)::text = 'population_specific_variant'::text)) OR ((cvterm.name)::text = 'de_novo_variant'::text)) OR ((cvterm.name)::text = 'variant_origin'::text));
- --
- -- Name: variant_phenotype; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW variant_phenotype AS
- SELECT feature.feature_id AS variant_phenotype_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((cvterm.name)::text = 'benign_variant'::text) OR ((cvterm.name)::text = 'disease_associated_variant'::text)) OR ((cvterm.name)::text = 'disease_causing_variant'::text)) OR ((cvterm.name)::text = 'lethal_variant'::text)) OR ((cvterm.name)::text = 'quantitative_variant'::text)) OR ((cvterm.name)::text = 'variant_phenotype'::text));
- --
- -- Name: variant_quality; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW variant_quality AS
- SELECT feature.feature_id AS variant_quality_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((((((((((((((((cvterm.name)::text = 'variant_origin'::text) OR ((cvterm.name)::text = 'variant_frequency'::text)) OR ((cvterm.name)::text = 'variant_phenotype'::text)) OR ((cvterm.name)::text = 'maternal_variant'::text)) OR ((cvterm.name)::text = 'paternal_variant'::text)) OR ((cvterm.name)::text = 'somatic_variant'::text)) OR ((cvterm.name)::text = 'germline_variant'::text)) OR ((cvterm.name)::text = 'pedigree_specific_variant'::text)) OR ((cvterm.name)::text = 'population_specific_variant'::text)) OR ((cvterm.name)::text = 'de_novo_variant'::text)) OR ((cvterm.name)::text = 'unique_variant'::text)) OR ((cvterm.name)::text = 'rare_variant'::text)) OR ((cvterm.name)::text = 'polymorphic_variant'::text)) OR ((cvterm.name)::text = 'common_variant'::text)) OR ((cvterm.name)::text = 'fixed_variant'::text)) OR ((cvterm.name)::text = 'benign_variant'::text)) OR ((cvterm.name)::text = 'disease_associated_variant'::text)) OR ((cvterm.name)::text = 'disease_causing_variant'::text)) OR ((cvterm.name)::text = 'lethal_variant'::text)) OR ((cvterm.name)::text = 'quantitative_variant'::text)) OR ((cvterm.name)::text = 'variant_quality'::text));
- --
- -- Name: vault_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vault_rna AS
- SELECT feature.feature_id AS vault_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'vault_RNA'::text);
- --
- -- Name: vd_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vd_gene AS
- SELECT feature.feature_id AS vd_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'VD_gene'::text);
- --
- -- Name: vdj_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vdj_c_cluster AS
- SELECT feature.feature_id AS vdj_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'VDJ_C_cluster'::text);
- --
- -- Name: vdj_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vdj_gene AS
- SELECT feature.feature_id AS vdj_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'VDJ_gene'::text);
- --
- -- Name: vdj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vdj_j_c_cluster AS
- SELECT feature.feature_id AS vdj_j_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'VDJ_J_C_cluster'::text);
- --
- -- Name: vdj_j_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vdj_j_cluster AS
- SELECT feature.feature_id AS vdj_j_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'VDJ_J_cluster'::text);
- --
- -- Name: vector_replicon; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vector_replicon AS
- SELECT feature.feature_id AS vector_replicon_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((cvterm.name)::text = 'YAC'::text) OR ((cvterm.name)::text = 'BAC'::text)) OR ((cvterm.name)::text = 'PAC'::text)) OR ((cvterm.name)::text = 'cosmid'::text)) OR ((cvterm.name)::text = 'phagemid'::text)) OR ((cvterm.name)::text = 'fosmid'::text)) OR ((cvterm.name)::text = 'lambda_vector'::text)) OR ((cvterm.name)::text = 'plasmid_vector'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'vector_replicon'::text));
- --
- -- Name: vertebrate_ig_t_cell_receptor_rearranged_gene_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vertebrate_ig_t_cell_receptor_rearranged_gene_cluster AS
- SELECT feature.feature_id AS vertebrate_ig_t_cell_receptor_rearranged_gene_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((cvterm.name)::text = 'DJ_J_cluster'::text) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text));
- --
- -- Name: vertebrate_immune_system_gene_recombination_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vertebrate_immune_system_gene_recombination_feature AS
- SELECT feature.feature_id AS vertebrate_immune_system_gene_recombination_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text)) OR ((cvterm.name)::text = 'D_gene'::text)) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'three_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'VD_gene'::text)) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_feature'::text));
- --
- -- Name: vertebrate_immune_system_gene_recombination_signal_feature; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vertebrate_immune_system_gene_recombination_signal_feature AS
- SELECT feature.feature_id AS vertebrate_immune_system_gene_recombination_signal_feature_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((((((((cvterm.name)::text = 'J_gene_recombination_feature'::text) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text));
- --
- -- Name: vertebrate_immune_system_gene_recombination_spacer; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vertebrate_immune_system_gene_recombination_spacer AS
- SELECT feature.feature_id AS vertebrate_immune_system_gene_recombination_spacer_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'three_prime_D_spacer'::text) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text));
- --
- -- Name: vertebrate_immunoglobulin_t_cell_receptor_gene_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vertebrate_immunoglobulin_t_cell_receptor_gene_cluster AS
- SELECT feature.feature_id AS vertebrate_immunoglobulin_t_cell_receptor_gene_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((((cvterm.name)::text = 'D_J_C_cluster'::text) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text));
- --
- -- Name: vertebrate_immunoglobulin_t_cell_receptor_rearranged_segment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vertebrate_immunoglobulin_t_cell_receptor_rearranged_segment AS
- SELECT feature.feature_id AS vertebrate_immunoglobulin_t_cell_receptor_rearranged_segment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'VD_gene'::text) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text));
- --
- -- Name: vertebrate_immunoglobulin_t_cell_receptor_segment; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vertebrate_immunoglobulin_t_cell_receptor_segment AS
- SELECT feature.feature_id AS vertebrate_immunoglobulin_t_cell_receptor_segment_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((cvterm.name)::text = 'D_gene'::text) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text));
- --
- -- Name: viral_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW viral_sequence AS
- SELECT feature.feature_id AS viral_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE (((((((((cvterm.name)::text = 'phage_sequence'::text) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'viral_sequence'::text));
- --
- -- Name: virtual_sequence; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW virtual_sequence AS
- SELECT feature.feature_id AS virtual_sequence_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'virtual_sequence'::text);
- --
- -- Name: vj_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vj_c_cluster AS
- SELECT feature.feature_id AS vj_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'VJ_C_cluster'::text);
- --
- -- Name: vj_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vj_gene AS
- SELECT feature.feature_id AS vj_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'VJ_gene'::text);
- --
- -- Name: vj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vj_j_c_cluster AS
- SELECT feature.feature_id AS vj_j_c_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'VJ_J_C_cluster'::text);
- --
- -- Name: vj_j_cluster; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW vj_j_cluster AS
- SELECT feature.feature_id AS vj_j_cluster_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'VJ_J_cluster'::text);
- --
- -- Name: wc_base_pair; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW wc_base_pair AS
- SELECT feature.feature_id AS wc_base_pair_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'WC_base_pair'::text);
- --
- -- Name: whole_genome_sequence_status; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW whole_genome_sequence_status AS
- SELECT feature.feature_id AS whole_genome_sequence_status_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((((((((cvterm.name)::text = 'standard_draft'::text) OR ((cvterm.name)::text = 'high_quality_draft'::text)) OR ((cvterm.name)::text = 'improved_high_quality_draft'::text)) OR ((cvterm.name)::text = 'annotation_directed_improved_draft'::text)) OR ((cvterm.name)::text = 'noncontiguous_finished'::text)) OR ((cvterm.name)::text = 'finished_genome'::text)) OR ((cvterm.name)::text = 'whole_genome_sequence_status'::text));
- --
- -- Name: wild_type; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW wild_type AS
- SELECT feature.feature_id AS wild_type_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'wild_type'::text);
- --
- -- Name: wild_type_rescue_gene; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW wild_type_rescue_gene AS
- SELECT feature.feature_id AS wild_type_rescue_gene_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'wild_type_rescue_gene'::text);
- --
- -- Name: wobble_base_pair; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW wobble_base_pair AS
- SELECT feature.feature_id AS wobble_base_pair_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'wobble_base_pair'::text);
- --
- -- Name: wybutosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW wybutosine AS
- SELECT feature.feature_id AS wybutosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'wybutosine'::text);
- --
- -- Name: wyosine; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW wyosine AS
- SELECT feature.feature_id AS wyosine_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'wyosine'::text);
- --
- -- Name: x_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW x_element AS
- SELECT feature.feature_id AS x_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'X_element'::text);
- --
- -- Name: x_element_combinatorial_repeat; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW x_element_combinatorial_repeat AS
- SELECT feature.feature_id AS x_element_combinatorial_repeat_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'X_element_combinatorial_repeat'::text);
- --
- -- Name: y_prime_element; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW y_prime_element AS
- SELECT feature.feature_id AS y_prime_element_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'Y_prime_element'::text);
- --
- -- Name: y_rna; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW y_rna AS
- SELECT feature.feature_id AS y_rna_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'Y_RNA'::text);
- --
- -- Name: yac; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW yac AS
- SELECT feature.feature_id AS yac_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'YAC'::text);
- --
- -- Name: yac_end; Type: VIEW; Schema: so; Owner: -
- --
- CREATE VIEW yac_end AS
- SELECT feature.feature_id AS yac_end_id,
- feature.feature_id,
- feature.dbxref_id,
- feature.organism_id,
- feature.name,
- feature.uniquename,
- feature.residues,
- feature.seqlen,
- feature.md5checksum,
- feature.type_id,
- feature.is_analysis,
- feature.is_obsolete,
- feature.timeaccessioned,
- feature.timelastmodified
- FROM (feature
- JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
- WHERE ((cvterm.name)::text = 'YAC_end'::text);
- SET search_path = public, pg_catalog;
- --
- -- Name: cv_root; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW cv_root AS
- SELECT cvterm.cv_id,
- cvterm.cvterm_id AS root_cvterm_id
- FROM cvterm
- WHERE ((NOT (cvterm.cvterm_id IN ( SELECT cvterm_relationship.subject_id
- FROM cvterm_relationship))) AND (cvterm.is_obsolete = 0));
- --
- -- Name: VIEW cv_root; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW cv_root IS 'the roots of a cv are the set of terms
- which have no parents (terms that are not the subject of a
- relation). Most cvs will have a single root, some may have >1. All
- will have at least 1';
- --
- -- Name: stats_paths_to_root; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW stats_paths_to_root AS
- SELECT cvtermpath.subject_id AS cvterm_id,
- count(DISTINCT cvtermpath.cvtermpath_id) AS total_paths,
- avg(cvtermpath.pathdistance) AS avg_distance,
- min(cvtermpath.pathdistance) AS min_distance,
- max(cvtermpath.pathdistance) AS max_distance
- FROM (cvtermpath
- JOIN cv_root ON ((cvtermpath.object_id = cv_root.root_cvterm_id)))
- GROUP BY cvtermpath.subject_id;
- --
- -- Name: VIEW stats_paths_to_root; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW stats_paths_to_root IS 'per-cvterm statistics on its
- placement in the DAG relative to the root. There may be multiple paths
- from any term to the root. This gives the total number of paths, and
- the average minimum and maximum distances. Here distance is defined by
- cvtermpath.pathdistance';
- --
- -- Name: INDEX cvterm_c1; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON INDEX cvterm_c1 IS 'A name can mean different things in
- different contexts; for example "chromosome" in SO and GO. A name
- should be unique within an ontology or cv. A name may exist twice in a
- cv, in both obsolete and non-obsolete forms - these will be for
- different cvterms with different OBO identifiers; so GO documentation
- for more details on obsoletion. Note that occasionally multiple
- obsolete terms with the same name will exist in the same cv. If this
- is a possibility for the ontology under consideration (e.g. GO) then the
- ID should be appended to the name to ensure uniqueness.';
- --
- -- Name: INDEX cvterm_c2; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON INDEX cvterm_c2 IS 'The OBO identifier is globally unique.';
- COMMENT ON INDEX featureprop_c1 IS 'For any one feature, multivalued
- property-value pairs must be differentiated by rank.';
- --
- -- gmod_materialized_view_tool.pl --create_view --view_name all_feature_names --table_name public.all_feature_names --refresh_time daily --column_def "feature_id bigint,name varchar(255),organism_id bigint,searchable_name tsvector" --sql_query "SELECT feature_id, CAST(substring(uniquename FROM 0 FOR 255) AS varchar(255)) AS name, organism_id, to_tsvector('english', CAST(substring(uniquename FROM 0 FOR 255) AS varchar(255))) AS searchable_name FROM feature UNION SELECT feature_id, name, organism_id, to_tsvector('english', name) AS searchable_name FROM feature WHERE name IS NOT NULL UNION SELECT fs.feature_id, s.name, f.organism_id, to_tsvector('english', s.name) AS searchable_name FROM feature_synonym fs, synonym s, feature f WHERE fs.synonym_id = s.synonym_id AND fs.feature_id = f.feature_id UNION SELECT fp.feature_id, CAST(substring(fp.value FROM 0 FOR 255) AS varchar(255)) AS name, f.organism_id, to_tsvector('english',CAST(substring(fp.value FROM 0 FOR 255) AS varchar(255))) AS searchable_name FROM featureprop fp, feature f WHERE f.feature_id = fp.feature_id UNION SELECT fd.feature_id, d.accession, f.organism_id,to_tsvector('english',d.accession) AS searchable_name FROM feature_dbxref fd, dbxref d,feature f WHERE fd.dbxref_id = d.dbxref_id AND fd.feature_id = f.feature_id" --index_fields "feature_id,name" --special_index "CREATE INDEX searchable_all_feature_names_idx ON all_feature_names USING gin(searchable_name)" --yes
- --
- CREATE OR REPLACE VIEW all_feature_names (
- feature_id,
- name,
- organism_id
- ) AS
- SELECT feature_id,CAST(substring(uniquename from 0 for 255) as varchar(255)) as name,organism_id FROM feature
- UNION
- SELECT feature_id, name, organism_id FROM feature where name is not null
- UNION
- SELECT fs.feature_id,s.name,f.organism_id FROM feature_synonym fs, synonym s, feature f
- WHERE fs.synonym_id = s.synonym_id AND fs.feature_id = f.feature_id
- UNION
- SELECT fp.feature_id, CAST(substring(fp.value from 0 for 255) as varchar(255)) as name,f.organism_id FROM featureprop fp, feature f
- WHERE f.feature_id = fp.feature_id
- UNION
- SELECT fd.feature_id, d.accession, f.organism_id FROM feature_dbxref fd, dbxref d,feature f
- WHERE fd.dbxref_id = d.dbxref_id AND fd.feature_id = f.feature_id;
- --
- -- Name: common_ancestor_cvterm; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW common_ancestor_cvterm AS
- SELECT p1.subject_id AS cvterm1_id,
- p2.subject_id AS cvterm2_id,
- p1.object_id AS ancestor_cvterm_id,
- p1.pathdistance AS pathdistance1,
- p2.pathdistance AS pathdistance2,
- (p1.pathdistance + p2.pathdistance) AS total_pathdistance
- FROM cvtermpath p1,
- cvtermpath p2
- WHERE (p1.object_id = p2.object_id);
- --
- -- Name: VIEW common_ancestor_cvterm; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW common_ancestor_cvterm IS 'The common ancestor of any
- two terms is the intersection of both terms ancestors. Two terms can
- have multiple common ancestors. Use total_pathdistance to get the
- least common ancestor';
- --
- -- Name: common_descendant_cvterm; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW common_descendant_cvterm AS
- SELECT p1.object_id AS cvterm1_id,
- p2.object_id AS cvterm2_id,
- p1.subject_id AS ancestor_cvterm_id,
- p1.pathdistance AS pathdistance1,
- p2.pathdistance AS pathdistance2,
- (p1.pathdistance + p2.pathdistance) AS total_pathdistance
- FROM cvtermpath p1,
- cvtermpath p2
- WHERE (p1.subject_id = p2.subject_id);
- --
- -- Name: VIEW common_descendant_cvterm; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW common_descendant_cvterm IS 'The common descendant of
- any two terms is the intersection of both terms descendants. Two terms
- can have multiple common descendants. Use total_pathdistance to get
- the least common ancestor';
- --
- -- Name: cv_cvterm_count; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW cv_cvterm_count AS
- SELECT cv.name,
- count(*) AS num_terms_excl_obs
- FROM (cv
- JOIN cvterm USING (cv_id))
- WHERE (cvterm.is_obsolete = 0)
- GROUP BY cv.name;
- --
- -- Name: VIEW cv_cvterm_count; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW cv_cvterm_count IS 'per-cv terms counts (excludes obsoletes)';
- --
- -- Name: cv_cvterm_count_with_obs; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW cv_cvterm_count_with_obs AS
- SELECT cv.name,
- count(*) AS num_terms_incl_obs
- FROM (cv
- JOIN cvterm USING (cv_id))
- GROUP BY cv.name;
- --
- -- Name: VIEW cv_cvterm_count_with_obs; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW cv_cvterm_count_with_obs IS 'per-cv terms counts (includes obsoletes)';
- --
- -- Name: cv_leaf; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW cv_leaf AS
- SELECT cvterm.cv_id,
- cvterm.cvterm_id
- FROM cvterm
- WHERE (NOT (cvterm.cvterm_id IN ( SELECT cvterm_relationship.object_id
- FROM cvterm_relationship)));
- --
- -- Name: VIEW cv_leaf; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW cv_leaf IS 'the leaves of a cv are the set of terms
- which have no children (terms that are not the object of a
- relation). All cvs will have at least 1 leaf';
- --
- -- Name: cv_link_count; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW cv_link_count AS
- SELECT cv.name AS cv_name,
- relation.name AS relation_name,
- relation_cv.name AS relation_cv_name,
- count(*) AS num_links
- FROM ((((cv
- JOIN cvterm ON ((cvterm.cv_id = cv.cv_id)))
- JOIN cvterm_relationship ON ((cvterm.cvterm_id = cvterm_relationship.subject_id)))
- JOIN cvterm relation ON ((cvterm_relationship.type_id = relation.cvterm_id)))
- JOIN cv relation_cv ON ((relation.cv_id = relation_cv.cv_id)))
- GROUP BY cv.name, relation.name, relation_cv.name;
- --
- -- Name: VIEW cv_link_count; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW cv_link_count IS 'per-cv summary of number of
- links (cvterm_relationships) broken down by
- relationship_type. num_links is the total # of links of the specified
- type in which the subject_id of the link is in the named cv';
- --
- -- Name: cv_path_count; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW cv_path_count AS
- SELECT cv.name AS cv_name,
- relation.name AS relation_name,
- relation_cv.name AS relation_cv_name,
- count(*) AS num_paths
- FROM ((((cv
- JOIN cvterm ON ((cvterm.cv_id = cv.cv_id)))
- JOIN cvtermpath ON ((cvterm.cvterm_id = cvtermpath.subject_id)))
- JOIN cvterm relation ON ((cvtermpath.type_id = relation.cvterm_id)))
- JOIN cv relation_cv ON ((relation.cv_id = relation_cv.cv_id)))
- GROUP BY cv.name, relation.name, relation_cv.name;
- --
- -- Name: VIEW cv_path_count; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW cv_path_count IS 'per-cv summary of number of
- paths (cvtermpaths) broken down by relationship_type. num_paths is the
- total # of paths of the specified type in which the subject_id of the
- path is in the named cv. See also: cv_distinct_relations';
- --
- -- Name: db_dbxref_count; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW db_dbxref_count AS
- SELECT db.name,
- count(*) AS num_dbxrefs
- FROM (db
- JOIN dbxref USING (db_id))
- GROUP BY db.name;
- --
- -- Name: VIEW db_dbxref_count; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW db_dbxref_count IS 'per-db dbxref counts';
- --
- -- Name: dfeatureloc; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW dfeatureloc AS
- SELECT featureloc.featureloc_id,
- featureloc.feature_id,
- featureloc.srcfeature_id,
- featureloc.fmin AS nbeg,
- featureloc.is_fmin_partial AS is_nbeg_partial,
- featureloc.fmax AS nend,
- featureloc.is_fmax_partial AS is_nend_partial,
- featureloc.strand,
- featureloc.phase,
- featureloc.residue_info,
- featureloc.locgroup,
- featureloc.rank
- FROM featureloc
- WHERE ((featureloc.strand < 0) OR (featureloc.phase < 0))
- UNION
- SELECT featureloc.featureloc_id,
- featureloc.feature_id,
- featureloc.srcfeature_id,
- featureloc.fmax AS nbeg,
- featureloc.is_fmax_partial AS is_nbeg_partial,
- featureloc.fmin AS nend,
- featureloc.is_fmin_partial AS is_nend_partial,
- featureloc.strand,
- featureloc.phase,
- featureloc.residue_info,
- featureloc.locgroup,
- featureloc.rank
- FROM featureloc
- WHERE (((featureloc.strand IS NULL) OR (featureloc.strand >= 0)) OR (featureloc.phase >= 0));
- --
- -- Name: feature_contains; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW feature_contains AS
- SELECT x.feature_id AS subject_id,
- y.feature_id AS object_id
- FROM featureloc x,
- featureloc y
- WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((y.fmin >= x.fmin) AND (y.fmin <= x.fmax)));
- --
- -- Name: VIEW feature_contains; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW feature_contains IS 'subject intervals contains (or is
- same as) object interval. transitive,reflexive';
- --
- -- Name: feature_difference; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW feature_difference AS
- SELECT x.feature_id AS subject_id,
- y.feature_id AS object_id,
- x.strand AS srcfeature_id,
- x.srcfeature_id AS fmin,
- x.fmin AS fmax,
- y.fmin AS strand
- FROM featureloc x,
- featureloc y
- WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((x.fmin < y.fmin) AND (x.fmax >= y.fmax)))
- UNION
- SELECT x.feature_id AS subject_id,
- y.feature_id AS object_id,
- x.strand AS srcfeature_id,
- x.srcfeature_id AS fmin,
- y.fmax,
- x.fmax AS strand
- FROM featureloc x,
- featureloc y
- WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((x.fmax > y.fmax) AND (x.fmin <= y.fmin)));
- --
- -- Name: VIEW feature_difference; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW feature_difference IS 'size of gap between two features. must be abutting or disjoint';
- --
- -- Name: feature_disjoint; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW feature_disjoint AS
- SELECT x.feature_id AS subject_id,
- y.feature_id AS object_id
- FROM featureloc x,
- featureloc y
- WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((x.fmax < y.fmin) AND (x.fmin > y.fmax)));
- --
- -- Name: VIEW feature_disjoint; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW feature_disjoint IS 'featurelocs do not meet. symmetric';
- --
- -- Name: feature_distance; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW feature_distance AS
- SELECT x.feature_id AS subject_id,
- y.feature_id AS object_id,
- x.srcfeature_id,
- x.strand AS subject_strand,
- y.strand AS object_strand,
- CASE
- WHEN (x.fmax <= y.fmin) THEN (x.fmax - y.fmin)
- ELSE (y.fmax - x.fmin)
- END AS distance
- FROM featureloc x,
- featureloc y
- WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((x.fmax <= y.fmin) OR (x.fmin >= y.fmax)));
- --
- -- Name: feature_intersection; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW feature_intersection AS
- SELECT x.feature_id AS subject_id,
- y.feature_id AS object_id,
- x.srcfeature_id,
- x.strand AS subject_strand,
- y.strand AS object_strand,
- CASE
- WHEN (x.fmin < y.fmin) THEN y.fmin
- ELSE x.fmin
- END AS fmin,
- CASE
- WHEN (x.fmax > y.fmax) THEN y.fmax
- ELSE x.fmax
- END AS fmax
- FROM featureloc x,
- featureloc y
- WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((x.fmax >= y.fmin) AND (x.fmin <= y.fmax)));
- --
- -- Name: VIEW feature_intersection; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW feature_intersection IS 'set-intersection on interval defined by featureloc. featurelocs must meet';
- --
- -- Name: feature_meets; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW feature_meets AS
- SELECT x.feature_id AS subject_id,
- y.feature_id AS object_id
- FROM featureloc x,
- featureloc y
- WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((x.fmax >= y.fmin) AND (x.fmin <= y.fmax)));
- --
- -- Name: VIEW feature_meets; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW feature_meets IS 'intervals have at least one
- interbase point in common (ie overlap OR abut). symmetric,reflexive';
- --
- -- Name: feature_meets_on_same_strand; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW feature_meets_on_same_strand AS
- SELECT x.feature_id AS subject_id,
- y.feature_id AS object_id
- FROM featureloc x,
- featureloc y
- WHERE (((x.srcfeature_id = y.srcfeature_id) AND (x.strand = y.strand)) AND ((x.fmax >= y.fmin) AND (x.fmin <= y.fmax)));
- --
- -- Name: VIEW feature_meets_on_same_strand; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW feature_meets_on_same_strand IS 'as feature_meets, but
- featurelocs must be on the same strand. symmetric,reflexive';
- --
- -- Name: featureset_meets; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW featureset_meets AS
- SELECT x.object_id AS subject_id,
- y.object_id
- FROM ((feature_meets r
- JOIN feature_relationship x ON ((r.subject_id = x.subject_id)))
- JOIN feature_relationship y ON ((r.object_id = y.subject_id)));
- --
- -- Name: feature_union; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW feature_union AS
- SELECT x.feature_id AS subject_id,
- y.feature_id AS object_id,
- x.srcfeature_id,
- x.strand AS subject_strand,
- y.strand AS object_strand,
- CASE
- WHEN (x.fmin < y.fmin) THEN x.fmin
- ELSE y.fmin
- END AS fmin,
- CASE
- WHEN (x.fmax > y.fmax) THEN x.fmax
- ELSE y.fmax
- END AS fmax
- FROM featureloc x,
- featureloc y
- WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((x.fmax >= y.fmin) AND (x.fmin <= y.fmax)));
- --
- -- Name: VIEW feature_union; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW feature_union IS 'set-union on interval defined by featureloc. featurelocs must meet';
- --
- -- Name: f_type; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW f_type AS
- SELECT f.feature_id,
- f.name,
- f.dbxref_id,
- c.name AS type,
- f.residues,
- f.seqlen,
- f.md5checksum,
- f.type_id,
- f.timeaccessioned,
- f.timelastmodified
- FROM feature f,
- cvterm c
- WHERE (f.type_id = c.cvterm_id);
- --
- -- Name: f_loc; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW f_loc AS
- SELECT f.feature_id,
- f.name,
- f.dbxref_id,
- fl.nbeg,
- fl.nend,
- fl.strand
- FROM dfeatureloc fl,
- f_type f
- WHERE (f.feature_id = fl.feature_id);
- --
- -- Name: fnr_type; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW fnr_type AS
- SELECT f.feature_id,
- f.name,
- f.dbxref_id,
- c.name AS type,
- f.residues,
- f.seqlen,
- f.md5checksum,
- f.type_id,
- f.timeaccessioned,
- f.timelastmodified
- FROM (feature f
- LEFT JOIN analysisfeature af ON ((f.feature_id = af.feature_id))),
- cvterm c
- WHERE ((f.type_id = c.cvterm_id) AND (af.feature_id IS NULL));
- --
- -- Name: fp_key; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW fp_key AS
- SELECT fp.feature_id,
- c.name AS pkey,
- fp.value
- FROM featureprop fp,
- cvterm c
- WHERE (fp.featureprop_id = c.cvterm_id);
- --
- -- Name: gff3view; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW gff3view AS
- SELECT f.feature_id,
- sf.name AS ref,
- COALESCE(gffdbx.accession, '.'::character varying(255)) AS source,
- cv.name AS type,
- (fl.fmin + 1) AS fstart,
- fl.fmax AS fend,
- COALESCE((af.significance)::text, '.'::text) AS score,
- CASE
- WHEN (fl.strand = (-1)) THEN '-'::text
- WHEN (fl.strand = 1) THEN '+'::text
- ELSE '.'::text
- END AS strand,
- COALESCE((fl.phase)::text, '.'::text) AS phase,
- f.seqlen,
- f.name,
- f.organism_id
- FROM (((((feature f
- LEFT JOIN featureloc fl ON ((f.feature_id = fl.feature_id)))
- LEFT JOIN feature sf ON ((fl.srcfeature_id = sf.feature_id)))
- LEFT JOIN ( SELECT fd.feature_id,
- d.accession
- FROM ((feature_dbxref fd
- JOIN dbxref d USING (dbxref_id))
- JOIN db USING (db_id))
- WHERE ((db.name)::text = 'GFF_source'::text)) gffdbx ON ((f.feature_id = gffdbx.feature_id)))
- LEFT JOIN cvterm cv ON ((f.type_id = cv.cvterm_id)))
- LEFT JOIN analysisfeature af ON ((f.feature_id = af.feature_id)));
- --
- -- Name: intron_combined_view; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW intron_combined_view AS
- SELECT x1.feature_id AS exon1_id,
- x2.feature_id AS exon2_id,
- CASE
- WHEN (l1.strand = (-1)) THEN l2.fmax
- ELSE l1.fmax
- END AS fmin,
- CASE
- WHEN (l1.strand = (-1)) THEN l1.fmin
- ELSE l2.fmin
- END AS fmax,
- l1.strand,
- l1.srcfeature_id,
- r1.rank AS intron_rank,
- r1.object_id AS transcript_id
- FROM ((((((cvterm
- JOIN feature x1 ON ((x1.type_id = cvterm.cvterm_id)))
- JOIN feature_relationship r1 ON ((x1.feature_id = r1.subject_id)))
- JOIN featureloc l1 ON ((x1.feature_id = l1.feature_id)))
- JOIN feature x2 ON ((x2.type_id = cvterm.cvterm_id)))
- JOIN feature_relationship r2 ON ((x2.feature_id = r2.subject_id)))
- JOIN featureloc l2 ON ((x2.feature_id = l2.feature_id)))
- WHERE ((((((((cvterm.name)::text = 'exon'::text) AND ((r2.rank - r1.rank) = 1)) AND (r1.object_id = r2.object_id)) AND (l1.strand = l2.strand)) AND (l1.srcfeature_id = l2.srcfeature_id)) AND (l1.locgroup = 0)) AND (l2.locgroup = 0));
- --
- -- Name: intronloc_view; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW intronloc_view AS
- SELECT DISTINCT intron_combined_view.exon1_id,
- intron_combined_view.exon2_id,
- intron_combined_view.fmin,
- intron_combined_view.fmax,
- intron_combined_view.strand,
- intron_combined_view.srcfeature_id
- FROM intron_combined_view;
- --
- -- Name: type_feature_count; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW type_feature_count AS
- SELECT t.name AS type,
- count(*) AS num_features
- FROM (cvterm t
- JOIN feature ON ((feature.type_id = t.cvterm_id)))
- GROUP BY t.name;
- --
- -- Name: VIEW type_feature_count; Type: COMMENT; Schema: public; Owner: -
- --
- COMMENT ON VIEW type_feature_count IS 'per-feature-type feature counts';
- --
- -- Name: gffatts; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW gffatts AS
- SELECT fs.feature_id,
- 'Ontology_term'::text AS type,
- s.name AS attribute
- FROM cvterm s,
- feature_cvterm fs
- WHERE (fs.cvterm_id = s.cvterm_id)
- UNION ALL
- SELECT fs.feature_id,
- 'Dbxref'::text AS type,
- (((d.name)::text || ':'::text) || (s.accession)::text) AS attribute
- FROM dbxref s,
- feature_dbxref fs,
- db d
- WHERE ((fs.dbxref_id = s.dbxref_id) AND (s.db_id = d.db_id))
- UNION ALL
- SELECT fs.feature_id,
- 'Alias'::text AS type,
- s.name AS attribute
- FROM synonym s,
- feature_synonym fs
- WHERE (fs.synonym_id = s.synonym_id)
- UNION ALL
- SELECT fp.feature_id,
- cv.name AS type,
- fp.value AS attribute
- FROM featureprop fp,
- cvterm cv
- WHERE (fp.type_id = cv.cvterm_id)
- UNION ALL
- SELECT fs.feature_id,
- 'pub'::text AS type,
- (((s.series_name)::text || ':'::text) || s.title) AS attribute
- FROM pub s,
- feature_pub fs
- WHERE (fs.pub_id = s.pub_id);
- --
- -- Name: gff3atts; Type: VIEW; Schema: public; Owner: -
- --
- CREATE VIEW gff3atts AS
- SELECT fs.feature_id,
- 'Ontology_term'::text AS type,
- CASE
- WHEN ((db.name)::text ~~ '%Gene Ontology%'::text) THEN (('GO:'::text || (dbx.accession)::text))::character varying
- WHEN ((db.name)::text ~~ 'Sequence Ontology%'::text) THEN (('SO:'::text || (dbx.accession)::text))::character varying
- ELSE ((((db.name)::text || ':'::text) || (dbx.accession)::text))::character varying
- END AS attribute
- FROM cvterm s,
- dbxref dbx,
- feature_cvterm fs,
- db
- WHERE (((fs.cvterm_id = s.cvterm_id) AND (s.dbxref_id = dbx.dbxref_id)) AND (db.db_id = dbx.db_id))
- UNION ALL
- SELECT fs.feature_id,
- 'Dbxref'::text AS type,
- (((d.name)::text || ':'::text) || (s.accession)::text) AS attribute
- FROM dbxref s,
- feature_dbxref fs,
- db d
- WHERE (((fs.dbxref_id = s.dbxref_id) AND (s.db_id = d.db_id)) AND ((d.name)::text <> 'GFF_source'::text))
- UNION ALL
- SELECT f.feature_id,
- 'Alias'::text AS type,
- s.name AS attribute
- FROM synonym s,
- feature_synonym fs,
- feature f
- WHERE ((((fs.synonym_id = s.synonym_id) AND (f.feature_id = fs.feature_id)) AND ((f.name)::text <> (s.name)::text)) AND (f.uniquename <> (s.name)::text))
- UNION ALL
- SELECT fp.feature_id,
- cv.name AS type,
- fp.value AS attribute
- FROM featureprop fp,
- cvterm cv
- WHERE (fp.type_id = cv.cvterm_id)
- UNION ALL
- SELECT fs.feature_id,
- 'pub'::text AS type,
- (((s.series_name)::text || ':'::text) || s.title) AS attribute
- FROM pub s,
- feature_pub fs
- WHERE (fs.pub_id = s.pub_id)
- UNION ALL
- SELECT fr.subject_id AS feature_id,
- 'Parent'::text AS type,
- parent.uniquename AS attribute
- FROM feature_relationship fr,
- feature parent
- WHERE ((fr.object_id = parent.feature_id) AND (fr.type_id = ( SELECT cvterm.cvterm_id
- FROM cvterm
- WHERE (((cvterm.name)::text = 'part_of'::text) AND (cvterm.cv_id IN ( SELECT cv.cv_id
- FROM cv
- WHERE ((cv.name)::text = 'relationship'::text)))))))
- UNION ALL
- SELECT fr.subject_id AS feature_id,
- 'Derives_from'::text AS type,
- parent.uniquename AS attribute
- FROM feature_relationship fr,
- feature parent
- WHERE ((fr.object_id = parent.feature_id) AND (fr.type_id = ( SELECT cvterm.cvterm_id
- FROM cvterm
- WHERE (((cvterm.name)::text = 'derives_from'::text) AND (cvterm.cv_id IN ( SELECT cv.cv_id
- FROM cv
- WHERE ((cv.name)::text = 'relationship'::text)))))))
- UNION ALL
- SELECT fl.feature_id,
- 'Target'::text AS type,
- (((((((target.name)::text || ' '::text) || (fl.fmin + 1)) || ' '::text) || fl.fmax) || ' '::text) || fl.strand) AS attribute
- FROM featureloc fl,
- feature target
- WHERE ((fl.srcfeature_id = target.feature_id) AND (fl.rank <> 0))
- UNION ALL
- SELECT feature.feature_id,
- 'ID'::text AS type,
- feature.uniquename AS attribute
- FROM feature
- WHERE (NOT (feature.type_id IN ( SELECT cvterm.cvterm_id
- FROM cvterm
- WHERE ((cvterm.name)::text = 'CDS'::text))))
- UNION ALL
- SELECT feature.feature_id,
- 'chado_feature_id'::text AS type,
- (feature.feature_id)::character varying AS attribute
- FROM feature
- UNION ALL
- SELECT feature.feature_id,
- 'Name'::text AS type,
- feature.name AS attribute
- FROM feature;
- CREATE OR REPLACE VIEW common_descendant_cvterm AS
- SELECT
- p1.object_id AS cvterm1_id,
- p2.object_id AS cvterm2_id,
- p1.subject_id AS ancestor_cvterm_id,
- p1.pathdistance AS pathdistance1,
- p2.pathdistance AS pathdistance2,
- p1.pathdistance + p2.pathdistance
- AS total_pathdistance
- FROM
- cvtermpath AS p1,
- cvtermpath AS p2
- WHERE
- p1.subject_id = p2.subject_id;
- --
- -- Name: gfffeatureatts(integer); Type: FUNCTION; Schema: public; Owner: chado
- --
- CREATE FUNCTION gfffeatureatts(integer) RETURNS SETOF gffatts
- LANGUAGE sql
- AS $_$
- SELECT feature_id, 'Ontology_term' AS type, s.name AS attribute
- FROM cvterm s, feature_cvterm fs
- WHERE fs.feature_id= $1 AND fs.cvterm_id = s.cvterm_id
- UNION
- SELECT feature_id, 'Dbxref' AS type, d.name || ':' || s.accession AS attribute
- FROM dbxref s, feature_dbxref fs, db d
- WHERE fs.feature_id= $1 AND fs.dbxref_id = s.dbxref_id AND s.db_id = d.db_id
- UNION
- SELECT feature_id, 'Alias' AS type, s.name AS attribute
- FROM synonym s, feature_synonym fs
- WHERE fs.feature_id= $1 AND fs.synonym_id = s.synonym_id
- UNION
- SELECT fp.feature_id,cv.name,fp.value
- FROM featureprop fp, cvterm cv
- WHERE fp.feature_id= $1 AND fp.type_id = cv.cvterm_id
- UNION
- SELECT feature_id, 'pub' AS type, s.series_name || ':' || s.title AS attribute
- FROM pub s, feature_pub fs
- WHERE fs.feature_id= $1 AND fs.pub_id = s.pub_id
- $_$;
- create index feature_relationship_idx1b on feature_relationship (object_id, subject_id, type_id);
- create index featureloc_idx1b on featureloc (feature_id, fmin, fmax);
- create index feature_idx1b on feature (feature_id, dbxref_id) where dbxref_id is not null;
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