default_schema-1.2-1.3-diff.sql 2.0 MB

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  1. set search_path=public,so,frange,genetic_code;
  2. DROP FUNCTION IF EXISTS gfffeatureatts(integer);
  3. DROP VIEW IF EXISTS db_dbxref_count CASCADE;
  4. DROP VIEW IF EXISTS stats_paths_to_root CASCADE;
  5. DROP VIEW IF EXISTS cv_root CASCADE;
  6. DROP VIEW IF EXISTS cv_leaf CASCADE;
  7. DROP VIEW IF EXISTS common_ancestor_cvterm CASCADE;
  8. DROP VIEW IF EXISTS common_descendant_cvterm CASCADE;
  9. DROP VIEW IF EXISTS cv_cvterm_count CASCADE;
  10. DROP VIEW IF EXISTS cv_cvterm_count_with_obs CASCADE;
  11. DROP VIEW IF EXISTS cv_link_count CASCADE;
  12. DROP VIEW IF EXISTS cv_path_count CASCADE;
  13. DROP VIEW IF EXISTS type_feature_count CASCADE;
  14. DROP VIEW IF EXISTS region CASCADE;
  15. DROP VIEW IF EXISTS sequence_secondary_structure CASCADE;
  16. DROP VIEW IF EXISTS g_quartet CASCADE;
  17. DROP VIEW IF EXISTS interior_coding_exon CASCADE;
  18. DROP VIEW IF EXISTS satellite_dna CASCADE;
  19. DROP VIEW IF EXISTS pcr_product CASCADE;
  20. DROP VIEW IF EXISTS read_pair CASCADE;
  21. DROP VIEW IF EXISTS protein_coding CASCADE;
  22. DROP VIEW IF EXISTS non_protein_coding CASCADE;
  23. DROP VIEW IF EXISTS scrna_primary_transcript CASCADE;
  24. DROP VIEW IF EXISTS scrna CASCADE;
  25. DROP VIEW IF EXISTS inr_motif CASCADE;
  26. DROP VIEW IF EXISTS dpe_motif CASCADE;
  27. DROP VIEW IF EXISTS breu_motif CASCADE;
  28. DROP VIEW IF EXISTS pse_motif CASCADE;
  29. DROP VIEW IF EXISTS linkage_group CASCADE;
  30. DROP VIEW IF EXISTS rna_internal_loop CASCADE;
  31. DROP VIEW IF EXISTS asymmetric_rna_internal_loop CASCADE;
  32. DROP VIEW IF EXISTS a_minor_rna_motif CASCADE;
  33. DROP VIEW IF EXISTS k_turn_rna_motif CASCADE;
  34. DROP VIEW IF EXISTS sarcin_like_rna_motif CASCADE;
  35. DROP VIEW IF EXISTS symmetric_rna_internal_loop CASCADE;
  36. DROP VIEW IF EXISTS rna_junction_loop CASCADE;
  37. DROP VIEW IF EXISTS rna_hook_turn CASCADE;
  38. DROP VIEW IF EXISTS base_pair CASCADE;
  39. DROP VIEW IF EXISTS wc_base_pair CASCADE;
  40. DROP VIEW IF EXISTS sugar_edge_base_pair CASCADE;
  41. DROP VIEW IF EXISTS aptamer CASCADE;
  42. DROP VIEW IF EXISTS dna_aptamer CASCADE;
  43. DROP VIEW IF EXISTS rna_aptamer CASCADE;
  44. DROP VIEW IF EXISTS morpholino_oligo CASCADE;
  45. DROP VIEW IF EXISTS riboswitch CASCADE;
  46. DROP VIEW IF EXISTS matrix_attachment_site CASCADE;
  47. DROP VIEW IF EXISTS locus_control_region CASCADE;
  48. DROP VIEW IF EXISTS match_part CASCADE;
  49. DROP VIEW IF EXISTS genomic_clone CASCADE;
  50. DROP VIEW IF EXISTS processed_pseudogene CASCADE;
  51. DROP VIEW IF EXISTS pseudogene_by_unequal_crossing_over CASCADE;
  52. DROP VIEW IF EXISTS probe CASCADE;
  53. DROP VIEW IF EXISTS aneuploid CASCADE;
  54. DROP VIEW IF EXISTS hyperploid CASCADE;
  55. DROP VIEW IF EXISTS hypoploid CASCADE;
  56. DROP VIEW IF EXISTS operator CASCADE;
  57. DROP VIEW IF EXISTS nuclease_binding_site CASCADE;
  58. DROP VIEW IF EXISTS compound_chromosome_arm CASCADE;
  59. DROP VIEW IF EXISTS restriction_enzyme_binding_site CASCADE;
  60. DROP VIEW IF EXISTS d_intrachr_transposition CASCADE;
  61. DROP VIEW IF EXISTS d_interchr_transposition CASCADE;
  62. DROP VIEW IF EXISTS free_chromosome_arm CASCADE;
  63. DROP VIEW IF EXISTS gene_to_gene_feature CASCADE;
  64. DROP VIEW IF EXISTS overlapping CASCADE;
  65. DROP VIEW IF EXISTS inside_intron CASCADE;
  66. DROP VIEW IF EXISTS inside_intron_antiparallel CASCADE;
  67. DROP VIEW IF EXISTS inside_intron_parallel CASCADE;
  68. DROP VIEW IF EXISTS five_prime_three_prime_overlap CASCADE;
  69. DROP VIEW IF EXISTS five_prime_five_prime_overlap CASCADE;
  70. DROP VIEW IF EXISTS three_prime_three_prime_overlap CASCADE;
  71. DROP VIEW IF EXISTS three_prime_five_prime_overlap CASCADE;
  72. DROP VIEW IF EXISTS antisense CASCADE;
  73. DROP VIEW IF EXISTS polycistronic_transcript CASCADE;
  74. DROP VIEW IF EXISTS dicistronic_transcript CASCADE;
  75. DROP VIEW IF EXISTS operon_member CASCADE;
  76. DROP VIEW IF EXISTS gene_array_member CASCADE;
  77. DROP VIEW IF EXISTS macronuclear_sequence CASCADE;
  78. DROP VIEW IF EXISTS micronuclear_sequence CASCADE;
  79. DROP VIEW IF EXISTS nuclear_gene CASCADE;
  80. DROP VIEW IF EXISTS mt_gene CASCADE;
  81. DROP VIEW IF EXISTS kinetoplast_gene CASCADE;
  82. DROP VIEW IF EXISTS plastid_gene CASCADE;
  83. DROP VIEW IF EXISTS apicoplast_gene CASCADE;
  84. DROP VIEW IF EXISTS ct_gene CASCADE;
  85. DROP VIEW IF EXISTS chromoplast_gene CASCADE;
  86. DROP VIEW IF EXISTS cyanelle_gene CASCADE;
  87. DROP VIEW IF EXISTS leucoplast_gene CASCADE;
  88. DROP VIEW IF EXISTS proplastid_gene CASCADE;
  89. DROP VIEW IF EXISTS nucleomorph_gene CASCADE;
  90. DROP VIEW IF EXISTS plasmid_gene CASCADE;
  91. DROP VIEW IF EXISTS proviral_gene CASCADE;
  92. DROP VIEW IF EXISTS endogenous_retroviral_gene CASCADE;
  93. DROP VIEW IF EXISTS transposable_element CASCADE;
  94. DROP VIEW IF EXISTS expressed_sequence_match CASCADE;
  95. DROP VIEW IF EXISTS clone_insert_end CASCADE;
  96. DROP VIEW IF EXISTS polypeptide CASCADE;
  97. DROP VIEW IF EXISTS chromosome_arm CASCADE;
  98. DROP VIEW IF EXISTS sequencing_primer CASCADE;
  99. DROP VIEW IF EXISTS mrna_with_frameshift CASCADE;
  100. DROP VIEW IF EXISTS sequence_feature CASCADE;
  101. DROP VIEW IF EXISTS transposable_element_gene CASCADE;
  102. DROP VIEW IF EXISTS primer CASCADE;
  103. DROP VIEW IF EXISTS proviral_region CASCADE;
  104. DROP VIEW IF EXISTS methylated_c CASCADE;
  105. DROP VIEW IF EXISTS edited CASCADE;
  106. DROP VIEW IF EXISTS transcript_with_translational_frameshift CASCADE;
  107. DROP VIEW IF EXISTS regulated CASCADE;
  108. DROP VIEW IF EXISTS protein_coding_primary_transcript CASCADE;
  109. DROP VIEW IF EXISTS forward_primer CASCADE;
  110. DROP VIEW IF EXISTS rna_sequence_secondary_structure CASCADE;
  111. DROP VIEW IF EXISTS transcriptionally_regulated CASCADE;
  112. DROP VIEW IF EXISTS transcriptionally_constitutive CASCADE;
  113. DROP VIEW IF EXISTS transcriptionally_induced CASCADE;
  114. DROP VIEW IF EXISTS transcriptionally_repressed CASCADE;
  115. DROP VIEW IF EXISTS silenced_gene CASCADE;
  116. DROP VIEW IF EXISTS gene_silenced_by_dna_modification CASCADE;
  117. DROP VIEW IF EXISTS gene_silenced_by_dna_methylation CASCADE;
  118. DROP VIEW IF EXISTS post_translationally_regulated CASCADE;
  119. DROP VIEW IF EXISTS translationally_regulated CASCADE;
  120. DROP VIEW IF EXISTS reverse_primer CASCADE;
  121. DROP VIEW IF EXISTS epigenetically_modified CASCADE;
  122. DROP VIEW IF EXISTS imprinted CASCADE;
  123. DROP VIEW IF EXISTS maternally_imprinted CASCADE;
  124. DROP VIEW IF EXISTS paternally_imprinted CASCADE;
  125. DROP VIEW IF EXISTS allelically_excluded CASCADE;
  126. DROP VIEW IF EXISTS gene_rearranged_at_dna_level CASCADE;
  127. DROP VIEW IF EXISTS ribosome_entry_site CASCADE;
  128. DROP VIEW IF EXISTS attenuator CASCADE;
  129. DROP VIEW IF EXISTS terminator CASCADE;
  130. DROP VIEW IF EXISTS dna_sequence_secondary_structure CASCADE;
  131. DROP VIEW IF EXISTS assembly_component CASCADE;
  132. DROP VIEW IF EXISTS recoded_codon CASCADE;
  133. DROP VIEW IF EXISTS capped CASCADE;
  134. DROP VIEW IF EXISTS exon CASCADE;
  135. DROP VIEW IF EXISTS supercontig CASCADE;
  136. DROP VIEW IF EXISTS contig CASCADE;
  137. DROP VIEW IF EXISTS read CASCADE;
  138. DROP VIEW IF EXISTS clone CASCADE;
  139. DROP VIEW IF EXISTS yac CASCADE;
  140. DROP VIEW IF EXISTS bac CASCADE;
  141. DROP VIEW IF EXISTS pac CASCADE;
  142. DROP VIEW IF EXISTS plasmid CASCADE;
  143. DROP VIEW IF EXISTS cosmid CASCADE;
  144. DROP VIEW IF EXISTS phagemid CASCADE;
  145. DROP VIEW IF EXISTS fosmid CASCADE;
  146. DROP VIEW IF EXISTS deletion CASCADE;
  147. DROP VIEW IF EXISTS methylated_a CASCADE;
  148. DROP VIEW IF EXISTS splice_site CASCADE;
  149. DROP VIEW IF EXISTS five_prime_cis_splice_site CASCADE;
  150. DROP VIEW IF EXISTS three_prime_cis_splice_site CASCADE;
  151. DROP VIEW IF EXISTS enhancer CASCADE;
  152. DROP VIEW IF EXISTS enhancer_bound_by_factor CASCADE;
  153. DROP VIEW IF EXISTS promoter CASCADE;
  154. DROP VIEW IF EXISTS rnapol_i_promoter CASCADE;
  155. DROP VIEW IF EXISTS rnapol_ii_promoter CASCADE;
  156. DROP VIEW IF EXISTS rnapol_iii_promoter CASCADE;
  157. DROP VIEW IF EXISTS caat_signal CASCADE;
  158. DROP VIEW IF EXISTS gc_rich_promoter_region CASCADE;
  159. DROP VIEW IF EXISTS tata_box CASCADE;
  160. DROP VIEW IF EXISTS minus_10_signal CASCADE;
  161. DROP VIEW IF EXISTS minus_35_signal CASCADE;
  162. DROP VIEW IF EXISTS cross_genome_match CASCADE;
  163. DROP VIEW IF EXISTS operon CASCADE;
  164. DROP VIEW IF EXISTS clone_insert_start CASCADE;
  165. DROP VIEW IF EXISTS retrotransposon CASCADE;
  166. DROP VIEW IF EXISTS translated_nucleotide_match CASCADE;
  167. DROP VIEW IF EXISTS dna_transposon CASCADE;
  168. DROP VIEW IF EXISTS non_transcribed_region CASCADE;
  169. DROP VIEW IF EXISTS u2_intron CASCADE;
  170. DROP VIEW IF EXISTS primary_transcript CASCADE;
  171. DROP VIEW IF EXISTS ltr_retrotransposon CASCADE;
  172. DROP VIEW IF EXISTS intron CASCADE;
  173. DROP VIEW IF EXISTS non_ltr_retrotransposon CASCADE;
  174. DROP VIEW IF EXISTS five_prime_intron CASCADE;
  175. DROP VIEW IF EXISTS interior_intron CASCADE;
  176. DROP VIEW IF EXISTS three_prime_intron CASCADE;
  177. DROP VIEW IF EXISTS rflp_fragment CASCADE;
  178. DROP VIEW IF EXISTS line_element CASCADE;
  179. DROP VIEW IF EXISTS coding_exon CASCADE;
  180. DROP VIEW IF EXISTS five_prime_coding_exon_coding_region CASCADE;
  181. DROP VIEW IF EXISTS three_prime_coding_exon_coding_region CASCADE;
  182. DROP VIEW IF EXISTS noncoding_exon CASCADE;
  183. DROP VIEW IF EXISTS translocation CASCADE;
  184. DROP VIEW IF EXISTS five_prime_coding_exon CASCADE;
  185. DROP VIEW IF EXISTS interior_exon CASCADE;
  186. DROP VIEW IF EXISTS three_prime_coding_exon CASCADE;
  187. DROP VIEW IF EXISTS utr CASCADE;
  188. DROP VIEW IF EXISTS five_prime_utr CASCADE;
  189. DROP VIEW IF EXISTS three_prime_utr CASCADE;
  190. DROP VIEW IF EXISTS sine_element CASCADE;
  191. DROP VIEW IF EXISTS simple_sequence_length_variation CASCADE;
  192. DROP VIEW IF EXISTS terminal_inverted_repeat_element CASCADE;
  193. DROP VIEW IF EXISTS rrna_primary_transcript CASCADE;
  194. DROP VIEW IF EXISTS trna_primary_transcript CASCADE;
  195. DROP VIEW IF EXISTS alanine_trna_primary_transcript CASCADE;
  196. DROP VIEW IF EXISTS arg_trna_primary_transcript CASCADE;
  197. DROP VIEW IF EXISTS asparagine_trna_primary_transcript CASCADE;
  198. DROP VIEW IF EXISTS aspartic_acid_trna_primary_transcript CASCADE;
  199. DROP VIEW IF EXISTS cysteine_trna_primary_transcript CASCADE;
  200. DROP VIEW IF EXISTS glutamic_acid_trna_primary_transcript CASCADE;
  201. DROP VIEW IF EXISTS glutamine_trna_primary_transcript CASCADE;
  202. DROP VIEW IF EXISTS glycine_trna_primary_transcript CASCADE;
  203. DROP VIEW IF EXISTS histidine_trna_primary_transcript CASCADE;
  204. DROP VIEW IF EXISTS isoleucine_trna_primary_transcript CASCADE;
  205. DROP VIEW IF EXISTS leucine_trna_primary_transcript CASCADE;
  206. DROP VIEW IF EXISTS lysine_trna_primary_transcript CASCADE;
  207. DROP VIEW IF EXISTS methionine_trna_primary_transcript CASCADE;
  208. DROP VIEW IF EXISTS phe_trna_primary_transcript CASCADE;
  209. DROP VIEW IF EXISTS proline_trna_primary_transcript CASCADE;
  210. DROP VIEW IF EXISTS serine_trna_primary_transcript CASCADE;
  211. DROP VIEW IF EXISTS thr_trna_primary_transcript CASCADE;
  212. DROP VIEW IF EXISTS try_trna_primary_transcript CASCADE;
  213. DROP VIEW IF EXISTS tyrosine_trna_primary_transcript CASCADE;
  214. DROP VIEW IF EXISTS valine_trna_primary_transcript CASCADE;
  215. DROP VIEW IF EXISTS snrna_primary_transcript CASCADE;
  216. DROP VIEW IF EXISTS snorna_primary_transcript CASCADE;
  217. DROP VIEW IF EXISTS mature_transcript CASCADE;
  218. DROP VIEW IF EXISTS protein_coding_gene CASCADE;
  219. DROP VIEW IF EXISTS mrna CASCADE;
  220. DROP VIEW IF EXISTS tf_binding_site CASCADE;
  221. DROP VIEW IF EXISTS orf CASCADE;
  222. DROP VIEW IF EXISTS transcript_attribute CASCADE;
  223. DROP VIEW IF EXISTS foldback_element CASCADE;
  224. DROP VIEW IF EXISTS flanking_region CASCADE;
  225. DROP VIEW IF EXISTS chromosome_variation CASCADE;
  226. DROP VIEW IF EXISTS internal_utr CASCADE;
  227. DROP VIEW IF EXISTS untranslated_region_polycistronic_mrna CASCADE;
  228. DROP VIEW IF EXISTS internal_ribosome_entry_site CASCADE;
  229. DROP VIEW IF EXISTS polyadenylated CASCADE;
  230. DROP VIEW IF EXISTS sequence_length_variation CASCADE;
  231. DROP VIEW IF EXISTS modified_rna_base_feature CASCADE;
  232. DROP VIEW IF EXISTS rrna CASCADE;
  233. DROP VIEW IF EXISTS trna CASCADE;
  234. DROP VIEW IF EXISTS alanyl_trna CASCADE;
  235. DROP VIEW IF EXISTS rrna_small_subunit_primary_transcript CASCADE;
  236. DROP VIEW IF EXISTS asparaginyl_trna CASCADE;
  237. DROP VIEW IF EXISTS aspartyl_trna CASCADE;
  238. DROP VIEW IF EXISTS cysteinyl_trna CASCADE;
  239. DROP VIEW IF EXISTS glutaminyl_trna CASCADE;
  240. DROP VIEW IF EXISTS glutamyl_trna CASCADE;
  241. DROP VIEW IF EXISTS glycyl_trna CASCADE;
  242. DROP VIEW IF EXISTS histidyl_trna CASCADE;
  243. DROP VIEW IF EXISTS isoleucyl_trna CASCADE;
  244. DROP VIEW IF EXISTS leucyl_trna CASCADE;
  245. DROP VIEW IF EXISTS lysyl_trna CASCADE;
  246. DROP VIEW IF EXISTS methionyl_trna CASCADE;
  247. DROP VIEW IF EXISTS phenylalanyl_trna CASCADE;
  248. DROP VIEW IF EXISTS prolyl_trna CASCADE;
  249. DROP VIEW IF EXISTS seryl_trna CASCADE;
  250. DROP VIEW IF EXISTS threonyl_trna CASCADE;
  251. DROP VIEW IF EXISTS tryptophanyl_trna CASCADE;
  252. DROP VIEW IF EXISTS tyrosyl_trna CASCADE;
  253. DROP VIEW IF EXISTS valyl_trna CASCADE;
  254. DROP VIEW IF EXISTS snrna CASCADE;
  255. DROP VIEW IF EXISTS snorna CASCADE;
  256. DROP VIEW IF EXISTS mirna CASCADE;
  257. DROP VIEW IF EXISTS bound_by_factor CASCADE;
  258. DROP VIEW IF EXISTS transcript_bound_by_nucleic_acid CASCADE;
  259. DROP VIEW IF EXISTS transcript_bound_by_protein CASCADE;
  260. DROP VIEW IF EXISTS engineered_gene CASCADE;
  261. DROP VIEW IF EXISTS engineered_foreign_gene CASCADE;
  262. DROP VIEW IF EXISTS mrna_with_minus_1_frameshift CASCADE;
  263. DROP VIEW IF EXISTS engineered_foreign_transposable_element_gene CASCADE;
  264. DROP VIEW IF EXISTS foreign_gene CASCADE;
  265. DROP VIEW IF EXISTS long_terminal_repeat CASCADE;
  266. DROP VIEW IF EXISTS fusion_gene CASCADE;
  267. DROP VIEW IF EXISTS engineered_fusion_gene CASCADE;
  268. DROP VIEW IF EXISTS microsatellite CASCADE;
  269. DROP VIEW IF EXISTS dinucleotide_repeat_microsatellite_feature CASCADE;
  270. DROP VIEW IF EXISTS trinuc_repeat_microsat CASCADE;
  271. DROP VIEW IF EXISTS engineered_foreign_repetitive_element CASCADE;
  272. DROP VIEW IF EXISTS inverted_repeat CASCADE;
  273. DROP VIEW IF EXISTS u12_intron CASCADE;
  274. DROP VIEW IF EXISTS origin_of_replication CASCADE;
  275. DROP VIEW IF EXISTS d_loop CASCADE;
  276. DROP VIEW IF EXISTS recombination_feature CASCADE;
  277. DROP VIEW IF EXISTS specific_recombination_site CASCADE;
  278. DROP VIEW IF EXISTS recombination_feature_of_rearranged_gene CASCADE;
  279. DROP VIEW IF EXISTS vertebrate_immune_system_gene_recombination_feature CASCADE;
  280. DROP VIEW IF EXISTS j_gene_recombination_feature CASCADE;
  281. DROP VIEW IF EXISTS clip CASCADE;
  282. DROP VIEW IF EXISTS modified_base CASCADE;
  283. DROP VIEW IF EXISTS methylated_base_feature CASCADE;
  284. DROP VIEW IF EXISTS cpg_island CASCADE;
  285. DROP VIEW IF EXISTS experimentally_determined CASCADE;
  286. DROP VIEW IF EXISTS stem_loop CASCADE;
  287. DROP VIEW IF EXISTS direct_repeat CASCADE;
  288. DROP VIEW IF EXISTS tss CASCADE;
  289. DROP VIEW IF EXISTS cds CASCADE;
  290. DROP VIEW IF EXISTS cdna_clone CASCADE;
  291. DROP VIEW IF EXISTS start_codon CASCADE;
  292. DROP VIEW IF EXISTS stop_codon CASCADE;
  293. DROP VIEW IF EXISTS intronic_splice_enhancer CASCADE;
  294. DROP VIEW IF EXISTS mrna_with_plus_1_frameshift CASCADE;
  295. DROP VIEW IF EXISTS nuclease_hypersensitive_site CASCADE;
  296. DROP VIEW IF EXISTS coding_start CASCADE;
  297. DROP VIEW IF EXISTS tag CASCADE;
  298. DROP VIEW IF EXISTS rrna_large_subunit_primary_transcript CASCADE;
  299. DROP VIEW IF EXISTS sage_tag CASCADE;
  300. DROP VIEW IF EXISTS coding_end CASCADE;
  301. DROP VIEW IF EXISTS microarray_oligo CASCADE;
  302. DROP VIEW IF EXISTS mrna_with_plus_2_frameshift CASCADE;
  303. DROP VIEW IF EXISTS conserved_region CASCADE;
  304. DROP VIEW IF EXISTS sts CASCADE;
  305. DROP VIEW IF EXISTS coding_conserved_region CASCADE;
  306. DROP VIEW IF EXISTS exon_junction CASCADE;
  307. DROP VIEW IF EXISTS nc_conserved_region CASCADE;
  308. DROP VIEW IF EXISTS mrna_with_minus_2_frameshift CASCADE;
  309. DROP VIEW IF EXISTS pseudogene CASCADE;
  310. DROP VIEW IF EXISTS rnai_reagent CASCADE;
  311. DROP VIEW IF EXISTS mite CASCADE;
  312. DROP VIEW IF EXISTS recombination_hotspot CASCADE;
  313. DROP VIEW IF EXISTS chromosome CASCADE;
  314. DROP VIEW IF EXISTS chromosome_band CASCADE;
  315. DROP VIEW IF EXISTS site_specific_recombination_target_region CASCADE;
  316. DROP VIEW IF EXISTS match CASCADE;
  317. DROP VIEW IF EXISTS splice_enhancer CASCADE;
  318. DROP VIEW IF EXISTS est CASCADE;
  319. DROP VIEW IF EXISTS loxp_site CASCADE;
  320. DROP VIEW IF EXISTS nucleotide_match CASCADE;
  321. DROP VIEW IF EXISTS nucleic_acid CASCADE;
  322. DROP VIEW IF EXISTS protein_match CASCADE;
  323. DROP VIEW IF EXISTS frt_site CASCADE;
  324. DROP VIEW IF EXISTS synthetic_sequence CASCADE;
  325. DROP VIEW IF EXISTS dna CASCADE;
  326. DROP VIEW IF EXISTS sequence_assembly CASCADE;
  327. DROP VIEW IF EXISTS group_1_intron_homing_endonuclease_target_region CASCADE;
  328. DROP VIEW IF EXISTS haplotype_block CASCADE;
  329. DROP VIEW IF EXISTS rna CASCADE;
  330. DROP VIEW IF EXISTS flanked CASCADE;
  331. DROP VIEW IF EXISTS floxed CASCADE;
  332. DROP VIEW IF EXISTS codon CASCADE;
  333. DROP VIEW IF EXISTS frt_flanked CASCADE;
  334. DROP VIEW IF EXISTS invalidated_by_chimeric_cdna CASCADE;
  335. DROP VIEW IF EXISTS floxed_gene CASCADE;
  336. DROP VIEW IF EXISTS transposable_element_flanking_region CASCADE;
  337. DROP VIEW IF EXISTS integron CASCADE;
  338. DROP VIEW IF EXISTS insertion_site CASCADE;
  339. DROP VIEW IF EXISTS atti_site CASCADE;
  340. DROP VIEW IF EXISTS transposable_element_insertion_site CASCADE;
  341. DROP VIEW IF EXISTS small_regulatory_ncrna CASCADE;
  342. DROP VIEW IF EXISTS conjugative_transposon CASCADE;
  343. DROP VIEW IF EXISTS enzymatic_rna CASCADE;
  344. DROP VIEW IF EXISTS recombinationally_inverted_gene CASCADE;
  345. DROP VIEW IF EXISTS ribozyme CASCADE;
  346. DROP VIEW IF EXISTS rrna_5_8s CASCADE;
  347. DROP VIEW IF EXISTS rna_6s CASCADE;
  348. DROP VIEW IF EXISTS csrb_rsmb_rna CASCADE;
  349. DROP VIEW IF EXISTS dsra_rna CASCADE;
  350. DROP VIEW IF EXISTS gcvb_rna CASCADE;
  351. DROP VIEW IF EXISTS hammerhead_ribozyme CASCADE;
  352. DROP VIEW IF EXISTS group_iia_intron CASCADE;
  353. DROP VIEW IF EXISTS group_iib_intron CASCADE;
  354. DROP VIEW IF EXISTS micf_rna CASCADE;
  355. DROP VIEW IF EXISTS oxys_rna CASCADE;
  356. DROP VIEW IF EXISTS rnase_mrp_rna CASCADE;
  357. DROP VIEW IF EXISTS rnase_p_rna CASCADE;
  358. DROP VIEW IF EXISTS rpra_rna CASCADE;
  359. DROP VIEW IF EXISTS rre_rna CASCADE;
  360. DROP VIEW IF EXISTS spot_42_rna CASCADE;
  361. DROP VIEW IF EXISTS telomerase_rna CASCADE;
  362. DROP VIEW IF EXISTS u1_snrna CASCADE;
  363. DROP VIEW IF EXISTS u2_snrna CASCADE;
  364. DROP VIEW IF EXISTS u4_snrna CASCADE;
  365. DROP VIEW IF EXISTS u4atac_snrna CASCADE;
  366. DROP VIEW IF EXISTS u5_snrna CASCADE;
  367. DROP VIEW IF EXISTS u6_snrna CASCADE;
  368. DROP VIEW IF EXISTS u6atac_snrna CASCADE;
  369. DROP VIEW IF EXISTS u11_snrna CASCADE;
  370. DROP VIEW IF EXISTS u12_snrna CASCADE;
  371. DROP VIEW IF EXISTS sequence_attribute CASCADE;
  372. DROP VIEW IF EXISTS gene_attribute CASCADE;
  373. DROP VIEW IF EXISTS u14_snorna CASCADE;
  374. DROP VIEW IF EXISTS vault_rna CASCADE;
  375. DROP VIEW IF EXISTS y_rna CASCADE;
  376. DROP VIEW IF EXISTS twintron CASCADE;
  377. DROP VIEW IF EXISTS rrna_18s CASCADE;
  378. DROP VIEW IF EXISTS binding_site CASCADE;
  379. DROP VIEW IF EXISTS protein_binding_site CASCADE;
  380. DROP VIEW IF EXISTS rescue_region CASCADE;
  381. DROP VIEW IF EXISTS restriction_fragment CASCADE;
  382. DROP VIEW IF EXISTS sequence_difference CASCADE;
  383. DROP VIEW IF EXISTS invalidated_by_genomic_contamination CASCADE;
  384. DROP VIEW IF EXISTS invalidated_by_genomic_polya_primed_cdna CASCADE;
  385. DROP VIEW IF EXISTS invalidated_by_partial_processing CASCADE;
  386. DROP VIEW IF EXISTS polypeptide_domain CASCADE;
  387. DROP VIEW IF EXISTS signal_peptide CASCADE;
  388. DROP VIEW IF EXISTS mature_protein_region CASCADE;
  389. DROP VIEW IF EXISTS five_prime_terminal_inverted_repeat CASCADE;
  390. DROP VIEW IF EXISTS three_prime_terminal_inverted_repeat CASCADE;
  391. DROP VIEW IF EXISTS u5_ltr_region CASCADE;
  392. DROP VIEW IF EXISTS r_ltr_region CASCADE;
  393. DROP VIEW IF EXISTS u3_ltr_region CASCADE;
  394. DROP VIEW IF EXISTS five_prime_ltr CASCADE;
  395. DROP VIEW IF EXISTS three_prime_ltr CASCADE;
  396. DROP VIEW IF EXISTS r_five_prime_ltr_region CASCADE;
  397. DROP VIEW IF EXISTS u5_five_prime_ltr_region CASCADE;
  398. DROP VIEW IF EXISTS u3_five_prime_ltr_region CASCADE;
  399. DROP VIEW IF EXISTS r_three_prime_ltr_region CASCADE;
  400. DROP VIEW IF EXISTS u3_three_prime_ltr_region CASCADE;
  401. DROP VIEW IF EXISTS u5_three_prime_ltr_region CASCADE;
  402. DROP VIEW IF EXISTS non_ltr_retrotransposon_polymeric_tract CASCADE;
  403. DROP VIEW IF EXISTS target_site_duplication CASCADE;
  404. DROP VIEW IF EXISTS rr_tract CASCADE;
  405. DROP VIEW IF EXISTS ars CASCADE;
  406. DROP VIEW IF EXISTS inverted_ring_chromosome CASCADE;
  407. DROP VIEW IF EXISTS vector_replicon CASCADE;
  408. DROP VIEW IF EXISTS ss_oligo CASCADE;
  409. DROP VIEW IF EXISTS ds_oligo CASCADE;
  410. DROP VIEW IF EXISTS polymer_attribute CASCADE;
  411. DROP VIEW IF EXISTS three_prime_noncoding_exon CASCADE;
  412. DROP VIEW IF EXISTS five_prime_noncoding_exon CASCADE;
  413. DROP VIEW IF EXISTS utr_intron CASCADE;
  414. DROP VIEW IF EXISTS five_prime_utr_intron CASCADE;
  415. DROP VIEW IF EXISTS three_prime_utr_intron CASCADE;
  416. DROP VIEW IF EXISTS random_sequence CASCADE;
  417. DROP VIEW IF EXISTS interband CASCADE;
  418. DROP VIEW IF EXISTS gene_with_polyadenylated_mrna CASCADE;
  419. DROP VIEW IF EXISTS chromosomal_transposition CASCADE;
  420. DROP VIEW IF EXISTS rasirna CASCADE;
  421. DROP VIEW IF EXISTS gene_with_mrna_with_frameshift CASCADE;
  422. DROP VIEW IF EXISTS recombinationally_rearranged_gene CASCADE;
  423. DROP VIEW IF EXISTS interchromosomal_duplication CASCADE;
  424. DROP VIEW IF EXISTS d_gene CASCADE;
  425. DROP VIEW IF EXISTS gene_with_trans_spliced_transcript CASCADE;
  426. DROP VIEW IF EXISTS vertebrate_immunoglobulin_t_cell_receptor_segment CASCADE;
  427. DROP VIEW IF EXISTS inversion_derived_bipartite_deficiency CASCADE;
  428. DROP VIEW IF EXISTS pseudogenic_region CASCADE;
  429. DROP VIEW IF EXISTS encodes_alternately_spliced_transcripts CASCADE;
  430. DROP VIEW IF EXISTS decayed_exon CASCADE;
  431. DROP VIEW IF EXISTS inversion_derived_deficiency_plus_duplication CASCADE;
  432. DROP VIEW IF EXISTS v_gene CASCADE;
  433. DROP VIEW IF EXISTS post_translationally_regulated_by_protein_stability CASCADE;
  434. DROP VIEW IF EXISTS golden_path_fragment CASCADE;
  435. DROP VIEW IF EXISTS post_translationally_regulated_by_protein_modification CASCADE;
  436. DROP VIEW IF EXISTS j_gene CASCADE;
  437. DROP VIEW IF EXISTS autoregulated CASCADE;
  438. DROP VIEW IF EXISTS tiling_path CASCADE;
  439. DROP VIEW IF EXISTS negatively_autoregulated CASCADE;
  440. DROP VIEW IF EXISTS tiling_path_fragment CASCADE;
  441. DROP VIEW IF EXISTS positively_autoregulated CASCADE;
  442. DROP VIEW IF EXISTS contig_read CASCADE;
  443. DROP VIEW IF EXISTS c_gene CASCADE;
  444. DROP VIEW IF EXISTS trans_spliced_transcript CASCADE;
  445. DROP VIEW IF EXISTS tiling_path_clone CASCADE;
  446. DROP VIEW IF EXISTS terminal_inverted_repeat CASCADE;
  447. DROP VIEW IF EXISTS vertebrate_immunoglobulin_t_cell_receptor_gene_cluster CASCADE;
  448. DROP VIEW IF EXISTS nc_primary_transcript CASCADE;
  449. DROP VIEW IF EXISTS three_prime_coding_exon_noncoding_region CASCADE;
  450. DROP VIEW IF EXISTS dj_j_cluster CASCADE;
  451. DROP VIEW IF EXISTS five_prime_coding_exon_noncoding_region CASCADE;
  452. DROP VIEW IF EXISTS vdj_j_c_cluster CASCADE;
  453. DROP VIEW IF EXISTS vdj_j_cluster CASCADE;
  454. DROP VIEW IF EXISTS vj_c_cluster CASCADE;
  455. DROP VIEW IF EXISTS vj_j_c_cluster CASCADE;
  456. DROP VIEW IF EXISTS vj_j_cluster CASCADE;
  457. DROP VIEW IF EXISTS d_gene_recombination_feature CASCADE;
  458. DROP VIEW IF EXISTS three_prime_d_heptamer CASCADE;
  459. DROP VIEW IF EXISTS three_prime_d_nonamer CASCADE;
  460. DROP VIEW IF EXISTS three_prime_d_spacer CASCADE;
  461. DROP VIEW IF EXISTS five_prime_d_heptamer CASCADE;
  462. DROP VIEW IF EXISTS five_prime_d_nonamer CASCADE;
  463. DROP VIEW IF EXISTS five_prime_d_spacer CASCADE;
  464. DROP VIEW IF EXISTS virtual_sequence CASCADE;
  465. DROP VIEW IF EXISTS hoogsteen_base_pair CASCADE;
  466. DROP VIEW IF EXISTS reverse_hoogsteen_base_pair CASCADE;
  467. DROP VIEW IF EXISTS d_dj_c_cluster CASCADE;
  468. DROP VIEW IF EXISTS d_dj_cluster CASCADE;
  469. DROP VIEW IF EXISTS d_dj_j_c_cluster CASCADE;
  470. DROP VIEW IF EXISTS pseudogenic_exon CASCADE;
  471. DROP VIEW IF EXISTS d_dj_j_cluster CASCADE;
  472. DROP VIEW IF EXISTS d_j_c_cluster CASCADE;
  473. DROP VIEW IF EXISTS vd_gene CASCADE;
  474. DROP VIEW IF EXISTS j_c_cluster CASCADE;
  475. DROP VIEW IF EXISTS inversion_derived_deficiency_plus_aneuploid CASCADE;
  476. DROP VIEW IF EXISTS j_cluster CASCADE;
  477. DROP VIEW IF EXISTS j_nonamer CASCADE;
  478. DROP VIEW IF EXISTS j_heptamer CASCADE;
  479. DROP VIEW IF EXISTS pseudogenic_transcript CASCADE;
  480. DROP VIEW IF EXISTS j_spacer CASCADE;
  481. DROP VIEW IF EXISTS v_dj_cluster CASCADE;
  482. DROP VIEW IF EXISTS v_dj_j_cluster CASCADE;
  483. DROP VIEW IF EXISTS v_vdj_c_cluster CASCADE;
  484. DROP VIEW IF EXISTS v_vdj_cluster CASCADE;
  485. DROP VIEW IF EXISTS v_vdj_j_cluster CASCADE;
  486. DROP VIEW IF EXISTS v_vj_c_cluster CASCADE;
  487. DROP VIEW IF EXISTS v_vj_cluster CASCADE;
  488. DROP VIEW IF EXISTS v_vj_j_cluster CASCADE;
  489. DROP VIEW IF EXISTS v_cluster CASCADE;
  490. DROP VIEW IF EXISTS v_d_dj_c_cluster CASCADE;
  491. DROP VIEW IF EXISTS v_d_dj_cluster CASCADE;
  492. DROP VIEW IF EXISTS v_d_dj_j_c_cluster CASCADE;
  493. DROP VIEW IF EXISTS v_d_dj_j_cluster CASCADE;
  494. DROP VIEW IF EXISTS v_d_j_c_cluster CASCADE;
  495. DROP VIEW IF EXISTS v_d_j_cluster CASCADE;
  496. DROP VIEW IF EXISTS v_heptamer CASCADE;
  497. DROP VIEW IF EXISTS v_j_cluster CASCADE;
  498. DROP VIEW IF EXISTS v_j_c_cluster CASCADE;
  499. DROP VIEW IF EXISTS v_nonamer CASCADE;
  500. DROP VIEW IF EXISTS v_spacer CASCADE;
  501. DROP VIEW IF EXISTS v_gene_recombination_feature CASCADE;
  502. DROP VIEW IF EXISTS dj_c_cluster CASCADE;
  503. DROP VIEW IF EXISTS dj_j_c_cluster CASCADE;
  504. DROP VIEW IF EXISTS vdj_c_cluster CASCADE;
  505. DROP VIEW IF EXISTS v_dj_c_cluster CASCADE;
  506. DROP VIEW IF EXISTS helitron CASCADE;
  507. DROP VIEW IF EXISTS recoding_pseudoknot CASCADE;
  508. DROP VIEW IF EXISTS designed_sequence CASCADE;
  509. DROP VIEW IF EXISTS inversion_derived_bipartite_duplication CASCADE;
  510. DROP VIEW IF EXISTS gene_with_edited_transcript CASCADE;
  511. DROP VIEW IF EXISTS inversion_derived_duplication_plus_aneuploid CASCADE;
  512. DROP VIEW IF EXISTS aneuploid_chromosome CASCADE;
  513. DROP VIEW IF EXISTS polya_signal_sequence CASCADE;
  514. DROP VIEW IF EXISTS shine_dalgarno_sequence CASCADE;
  515. DROP VIEW IF EXISTS polya_site CASCADE;
  516. DROP VIEW IF EXISTS five_prime_clip CASCADE;
  517. DROP VIEW IF EXISTS five_prime_d_recombination_signal_sequence CASCADE;
  518. DROP VIEW IF EXISTS three_prime_clip CASCADE;
  519. DROP VIEW IF EXISTS c_cluster CASCADE;
  520. DROP VIEW IF EXISTS d_cluster CASCADE;
  521. DROP VIEW IF EXISTS d_j_cluster CASCADE;
  522. DROP VIEW IF EXISTS heptamer_of_recombination_feature_of_vertebrate_im_sys_gene CASCADE;
  523. DROP VIEW IF EXISTS nonamer_of_recombination_feature_of_vertebrate_im_sys_gene CASCADE;
  524. DROP VIEW IF EXISTS vertebrate_immune_system_gene_recombination_spacer CASCADE;
  525. DROP VIEW IF EXISTS v_dj_j_c_cluster CASCADE;
  526. DROP VIEW IF EXISTS v_vdj_j_c_cluster CASCADE;
  527. DROP VIEW IF EXISTS v_vj_j_c_cluster CASCADE;
  528. DROP VIEW IF EXISTS inversion_derived_aneuploid_chromosome CASCADE;
  529. DROP VIEW IF EXISTS bidirectional_promoter CASCADE;
  530. DROP VIEW IF EXISTS retrotransposed CASCADE;
  531. DROP VIEW IF EXISTS three_prime_d_recombination_signal_sequence CASCADE;
  532. DROP VIEW IF EXISTS mirna_encoding CASCADE;
  533. DROP VIEW IF EXISTS dj_gene CASCADE;
  534. DROP VIEW IF EXISTS rrna_encoding CASCADE;
  535. DROP VIEW IF EXISTS vdj_gene CASCADE;
  536. DROP VIEW IF EXISTS scrna_encoding CASCADE;
  537. DROP VIEW IF EXISTS vj_gene CASCADE;
  538. DROP VIEW IF EXISTS centromere CASCADE;
  539. DROP VIEW IF EXISTS snorna_encoding CASCADE;
  540. DROP VIEW IF EXISTS edited_transcript_feature CASCADE;
  541. DROP VIEW IF EXISTS methylation_guide_snorna_primary_transcript CASCADE;
  542. DROP VIEW IF EXISTS cap CASCADE;
  543. DROP VIEW IF EXISTS rrna_cleavage_snorna_primary_transcript CASCADE;
  544. DROP VIEW IF EXISTS pre_edited_region CASCADE;
  545. DROP VIEW IF EXISTS tmrna CASCADE;
  546. DROP VIEW IF EXISTS c_d_box_snorna_encoding CASCADE;
  547. DROP VIEW IF EXISTS tmrna_primary_transcript CASCADE;
  548. DROP VIEW IF EXISTS group_i_intron CASCADE;
  549. DROP VIEW IF EXISTS autocatalytically_spliced_intron CASCADE;
  550. DROP VIEW IF EXISTS srp_rna_primary_transcript CASCADE;
  551. DROP VIEW IF EXISTS srp_rna CASCADE;
  552. DROP VIEW IF EXISTS pseudoknot CASCADE;
  553. DROP VIEW IF EXISTS h_pseudoknot CASCADE;
  554. DROP VIEW IF EXISTS c_d_box_snorna CASCADE;
  555. DROP VIEW IF EXISTS h_aca_box_snorna CASCADE;
  556. DROP VIEW IF EXISTS c_d_box_snorna_primary_transcript CASCADE;
  557. DROP VIEW IF EXISTS h_aca_box_snorna_primary_transcript CASCADE;
  558. DROP VIEW IF EXISTS guide_rna CASCADE;
  559. DROP VIEW IF EXISTS group_ii_intron CASCADE;
  560. DROP VIEW IF EXISTS editing_block CASCADE;
  561. DROP VIEW IF EXISTS intergenic_region CASCADE;
  562. DROP VIEW IF EXISTS editing_domain CASCADE;
  563. DROP VIEW IF EXISTS unedited_region CASCADE;
  564. DROP VIEW IF EXISTS h_aca_box_snorna_encoding CASCADE;
  565. DROP VIEW IF EXISTS oligo_u_tail CASCADE;
  566. DROP VIEW IF EXISTS polya_sequence CASCADE;
  567. DROP VIEW IF EXISTS branch_site CASCADE;
  568. DROP VIEW IF EXISTS polypyrimidine_tract CASCADE;
  569. DROP VIEW IF EXISTS bacterial_rnapol_promoter CASCADE;
  570. DROP VIEW IF EXISTS bacterial_terminator CASCADE;
  571. DROP VIEW IF EXISTS terminator_of_type_2_rnapol_iii_promoter CASCADE;
  572. DROP VIEW IF EXISTS transcription_end_site CASCADE;
  573. DROP VIEW IF EXISTS rnapol_iii_promoter_type_1 CASCADE;
  574. DROP VIEW IF EXISTS rnapol_iii_promoter_type_2 CASCADE;
  575. DROP VIEW IF EXISTS a_box CASCADE;
  576. DROP VIEW IF EXISTS b_box CASCADE;
  577. DROP VIEW IF EXISTS rnapol_iii_promoter_type_3 CASCADE;
  578. DROP VIEW IF EXISTS c_box CASCADE;
  579. DROP VIEW IF EXISTS snrna_encoding CASCADE;
  580. DROP VIEW IF EXISTS telomere CASCADE;
  581. DROP VIEW IF EXISTS silencer CASCADE;
  582. DROP VIEW IF EXISTS chromosomal_regulatory_element CASCADE;
  583. DROP VIEW IF EXISTS insulator CASCADE;
  584. DROP VIEW IF EXISTS chromosomal_structural_element CASCADE;
  585. DROP VIEW IF EXISTS five_prime_open_reading_frame CASCADE;
  586. DROP VIEW IF EXISTS upstream_aug_codon CASCADE;
  587. DROP VIEW IF EXISTS polycistronic_primary_transcript CASCADE;
  588. DROP VIEW IF EXISTS monocistronic_primary_transcript CASCADE;
  589. DROP VIEW IF EXISTS monocistronic_mrna CASCADE;
  590. DROP VIEW IF EXISTS polycistronic_mrna CASCADE;
  591. DROP VIEW IF EXISTS mini_exon_donor_rna CASCADE;
  592. DROP VIEW IF EXISTS spliced_leader_rna CASCADE;
  593. DROP VIEW IF EXISTS engineered_plasmid CASCADE;
  594. DROP VIEW IF EXISTS transcribed_spacer_region CASCADE;
  595. DROP VIEW IF EXISTS internal_transcribed_spacer_region CASCADE;
  596. DROP VIEW IF EXISTS external_transcribed_spacer_region CASCADE;
  597. DROP VIEW IF EXISTS tetranuc_repeat_microsat CASCADE;
  598. DROP VIEW IF EXISTS srp_rna_encoding CASCADE;
  599. DROP VIEW IF EXISTS minisatellite CASCADE;
  600. DROP VIEW IF EXISTS antisense_rna CASCADE;
  601. DROP VIEW IF EXISTS antisense_primary_transcript CASCADE;
  602. DROP VIEW IF EXISTS sirna CASCADE;
  603. DROP VIEW IF EXISTS mirna_primary_transcript CASCADE;
  604. DROP VIEW IF EXISTS strna_primary_transcript CASCADE;
  605. DROP VIEW IF EXISTS strna CASCADE;
  606. DROP VIEW IF EXISTS small_subunit_rrna CASCADE;
  607. DROP VIEW IF EXISTS large_subunit_rrna CASCADE;
  608. DROP VIEW IF EXISTS rrna_5s CASCADE;
  609. DROP VIEW IF EXISTS rrna_28s CASCADE;
  610. DROP VIEW IF EXISTS maxicircle_gene CASCADE;
  611. DROP VIEW IF EXISTS ncrna CASCADE;
  612. DROP VIEW IF EXISTS strna_encoding CASCADE;
  613. DROP VIEW IF EXISTS repeat_region CASCADE;
  614. DROP VIEW IF EXISTS dispersed_repeat CASCADE;
  615. DROP VIEW IF EXISTS tmrna_encoding CASCADE;
  616. DROP VIEW IF EXISTS spliceosomal_intron CASCADE;
  617. DROP VIEW IF EXISTS trna_encoding CASCADE;
  618. DROP VIEW IF EXISTS introgressed_chromosome_region CASCADE;
  619. DROP VIEW IF EXISTS monocistronic_transcript CASCADE;
  620. DROP VIEW IF EXISTS mobile_intron CASCADE;
  621. DROP VIEW IF EXISTS insertion CASCADE;
  622. DROP VIEW IF EXISTS est_match CASCADE;
  623. DROP VIEW IF EXISTS sequence_rearrangement_feature CASCADE;
  624. DROP VIEW IF EXISTS chromosome_breakage_sequence CASCADE;
  625. DROP VIEW IF EXISTS internal_eliminated_sequence CASCADE;
  626. DROP VIEW IF EXISTS macronucleus_destined_segment CASCADE;
  627. DROP VIEW IF EXISTS transcript CASCADE;
  628. DROP VIEW IF EXISTS canonical_three_prime_splice_site CASCADE;
  629. DROP VIEW IF EXISTS canonical_five_prime_splice_site CASCADE;
  630. DROP VIEW IF EXISTS non_canonical_three_prime_splice_site CASCADE;
  631. DROP VIEW IF EXISTS non_canonical_five_prime_splice_site CASCADE;
  632. DROP VIEW IF EXISTS non_canonical_start_codon CASCADE;
  633. DROP VIEW IF EXISTS aberrant_processed_transcript CASCADE;
  634. DROP VIEW IF EXISTS exonic_splice_enhancer CASCADE;
  635. DROP VIEW IF EXISTS nuclease_sensitive_site CASCADE;
  636. DROP VIEW IF EXISTS dnasei_hypersensitive_site CASCADE;
  637. DROP VIEW IF EXISTS translocation_element CASCADE;
  638. DROP VIEW IF EXISTS deletion_junction CASCADE;
  639. DROP VIEW IF EXISTS golden_path CASCADE;
  640. DROP VIEW IF EXISTS cdna_match CASCADE;
  641. DROP VIEW IF EXISTS gene_with_polycistronic_transcript CASCADE;
  642. DROP VIEW IF EXISTS cleaved_initiator_methionine CASCADE;
  643. DROP VIEW IF EXISTS gene_with_dicistronic_transcript CASCADE;
  644. DROP VIEW IF EXISTS gene_with_recoded_mrna CASCADE;
  645. DROP VIEW IF EXISTS snp CASCADE;
  646. DROP VIEW IF EXISTS reagent CASCADE;
  647. DROP VIEW IF EXISTS oligo CASCADE;
  648. DROP VIEW IF EXISTS gene_with_stop_codon_read_through CASCADE;
  649. DROP VIEW IF EXISTS gene_with_stop_codon_redefined_as_pyrrolysine CASCADE;
  650. DROP VIEW IF EXISTS junction CASCADE;
  651. DROP VIEW IF EXISTS remark CASCADE;
  652. DROP VIEW IF EXISTS possible_base_call_error CASCADE;
  653. DROP VIEW IF EXISTS possible_assembly_error CASCADE;
  654. DROP VIEW IF EXISTS experimental_result_region CASCADE;
  655. DROP VIEW IF EXISTS gene CASCADE;
  656. DROP VIEW IF EXISTS tandem_repeat CASCADE;
  657. DROP VIEW IF EXISTS trans_splice_acceptor_site CASCADE;
  658. DROP VIEW IF EXISTS trans_splice_donor_site CASCADE;
  659. DROP VIEW IF EXISTS sl1_acceptor_site CASCADE;
  660. DROP VIEW IF EXISTS sl2_acceptor_site CASCADE;
  661. DROP VIEW IF EXISTS gene_with_stop_codon_redefined_as_selenocysteine CASCADE;
  662. DROP VIEW IF EXISTS gene_with_mrna_recoded_by_translational_bypass CASCADE;
  663. DROP VIEW IF EXISTS gene_with_transcript_with_translational_frameshift CASCADE;
  664. DROP VIEW IF EXISTS dna_motif CASCADE;
  665. DROP VIEW IF EXISTS nucleotide_motif CASCADE;
  666. DROP VIEW IF EXISTS rna_motif CASCADE;
  667. DROP VIEW IF EXISTS dicistronic_mrna CASCADE;
  668. DROP VIEW IF EXISTS reading_frame CASCADE;
  669. DROP VIEW IF EXISTS blocked_reading_frame CASCADE;
  670. DROP VIEW IF EXISTS ultracontig CASCADE;
  671. DROP VIEW IF EXISTS foreign_transposable_element CASCADE;
  672. DROP VIEW IF EXISTS gene_with_dicistronic_primary_transcript CASCADE;
  673. DROP VIEW IF EXISTS gene_with_dicistronic_mrna CASCADE;
  674. DROP VIEW IF EXISTS idna CASCADE;
  675. DROP VIEW IF EXISTS orit CASCADE;
  676. DROP VIEW IF EXISTS transit_peptide CASCADE;
  677. DROP VIEW IF EXISTS repeat_unit CASCADE;
  678. DROP VIEW IF EXISTS crm CASCADE;
  679. DROP VIEW IF EXISTS intein CASCADE;
  680. DROP VIEW IF EXISTS intein_containing CASCADE;
  681. DROP VIEW IF EXISTS gap CASCADE;
  682. DROP VIEW IF EXISTS fragmentary CASCADE;
  683. DROP VIEW IF EXISTS predicted CASCADE;
  684. DROP VIEW IF EXISTS feature_attribute CASCADE;
  685. DROP VIEW IF EXISTS exemplar_mrna CASCADE;
  686. DROP VIEW IF EXISTS sequence_location CASCADE;
  687. DROP VIEW IF EXISTS organelle_sequence CASCADE;
  688. DROP VIEW IF EXISTS mitochondrial_sequence CASCADE;
  689. DROP VIEW IF EXISTS nuclear_sequence CASCADE;
  690. DROP VIEW IF EXISTS nucleomorphic_sequence CASCADE;
  691. DROP VIEW IF EXISTS plastid_sequence CASCADE;
  692. DROP VIEW IF EXISTS kinetoplast CASCADE;
  693. DROP VIEW IF EXISTS maxicircle CASCADE;
  694. DROP VIEW IF EXISTS apicoplast_sequence CASCADE;
  695. DROP VIEW IF EXISTS chromoplast_sequence CASCADE;
  696. DROP VIEW IF EXISTS chloroplast_sequence CASCADE;
  697. DROP VIEW IF EXISTS cyanelle_sequence CASCADE;
  698. DROP VIEW IF EXISTS leucoplast_sequence CASCADE;
  699. DROP VIEW IF EXISTS proplastid_sequence CASCADE;
  700. DROP VIEW IF EXISTS plasmid_location CASCADE;
  701. DROP VIEW IF EXISTS amplification_origin CASCADE;
  702. DROP VIEW IF EXISTS proviral_location CASCADE;
  703. DROP VIEW IF EXISTS gene_group_regulatory_region CASCADE;
  704. DROP VIEW IF EXISTS clone_insert CASCADE;
  705. DROP VIEW IF EXISTS lambda_vector CASCADE;
  706. DROP VIEW IF EXISTS plasmid_vector CASCADE;
  707. DROP VIEW IF EXISTS cdna CASCADE;
  708. DROP VIEW IF EXISTS single_stranded_cdna CASCADE;
  709. DROP VIEW IF EXISTS double_stranded_cdna CASCADE;
  710. DROP VIEW IF EXISTS pyrrolysyl_trna CASCADE;
  711. DROP VIEW IF EXISTS episome CASCADE;
  712. DROP VIEW IF EXISTS tmrna_coding_piece CASCADE;
  713. DROP VIEW IF EXISTS tmrna_acceptor_piece CASCADE;
  714. DROP VIEW IF EXISTS qtl CASCADE;
  715. DROP VIEW IF EXISTS genomic_island CASCADE;
  716. DROP VIEW IF EXISTS pathogenic_island CASCADE;
  717. DROP VIEW IF EXISTS metabolic_island CASCADE;
  718. DROP VIEW IF EXISTS adaptive_island CASCADE;
  719. DROP VIEW IF EXISTS symbiosis_island CASCADE;
  720. DROP VIEW IF EXISTS pseudogenic_rrna CASCADE;
  721. DROP VIEW IF EXISTS pseudogenic_trna CASCADE;
  722. DROP VIEW IF EXISTS engineered_episome CASCADE;
  723. DROP VIEW IF EXISTS transgenic CASCADE;
  724. DROP VIEW IF EXISTS so_natural CASCADE;
  725. DROP VIEW IF EXISTS engineered CASCADE;
  726. DROP VIEW IF EXISTS so_foreign CASCADE;
  727. DROP VIEW IF EXISTS cloned_region CASCADE;
  728. DROP VIEW IF EXISTS validated CASCADE;
  729. DROP VIEW IF EXISTS invalidated CASCADE;
  730. DROP VIEW IF EXISTS engineered_rescue_region CASCADE;
  731. DROP VIEW IF EXISTS rescue_mini_gene CASCADE;
  732. DROP VIEW IF EXISTS transgenic_transposable_element CASCADE;
  733. DROP VIEW IF EXISTS natural_transposable_element CASCADE;
  734. DROP VIEW IF EXISTS engineered_transposable_element CASCADE;
  735. DROP VIEW IF EXISTS engineered_foreign_transposable_element CASCADE;
  736. DROP VIEW IF EXISTS assortment_derived_duplication CASCADE;
  737. DROP VIEW IF EXISTS assortment_derived_deficiency_plus_duplication CASCADE;
  738. DROP VIEW IF EXISTS assortment_derived_deficiency CASCADE;
  739. DROP VIEW IF EXISTS assortment_derived_aneuploid CASCADE;
  740. DROP VIEW IF EXISTS engineered_region CASCADE;
  741. DROP VIEW IF EXISTS engineered_foreign_region CASCADE;
  742. DROP VIEW IF EXISTS fusion CASCADE;
  743. DROP VIEW IF EXISTS engineered_tag CASCADE;
  744. DROP VIEW IF EXISTS validated_cdna_clone CASCADE;
  745. DROP VIEW IF EXISTS invalidated_cdna_clone CASCADE;
  746. DROP VIEW IF EXISTS chimeric_cdna_clone CASCADE;
  747. DROP VIEW IF EXISTS genomically_contaminated_cdna_clone CASCADE;
  748. DROP VIEW IF EXISTS polya_primed_cdna_clone CASCADE;
  749. DROP VIEW IF EXISTS partially_processed_cdna_clone CASCADE;
  750. DROP VIEW IF EXISTS rescue CASCADE;
  751. DROP VIEW IF EXISTS mini_gene CASCADE;
  752. DROP VIEW IF EXISTS rescue_gene CASCADE;
  753. DROP VIEW IF EXISTS wild_type CASCADE;
  754. DROP VIEW IF EXISTS wild_type_rescue_gene CASCADE;
  755. DROP VIEW IF EXISTS mitochondrial_chromosome CASCADE;
  756. DROP VIEW IF EXISTS chloroplast_chromosome CASCADE;
  757. DROP VIEW IF EXISTS chromoplast_chromosome CASCADE;
  758. DROP VIEW IF EXISTS cyanelle_chromosome CASCADE;
  759. DROP VIEW IF EXISTS leucoplast_chromosome CASCADE;
  760. DROP VIEW IF EXISTS macronuclear_chromosome CASCADE;
  761. DROP VIEW IF EXISTS micronuclear_chromosome CASCADE;
  762. DROP VIEW IF EXISTS nuclear_chromosome CASCADE;
  763. DROP VIEW IF EXISTS nucleomorphic_chromosome CASCADE;
  764. DROP VIEW IF EXISTS chromosome_part CASCADE;
  765. DROP VIEW IF EXISTS gene_member_region CASCADE;
  766. DROP VIEW IF EXISTS transcript_region CASCADE;
  767. DROP VIEW IF EXISTS mature_transcript_region CASCADE;
  768. DROP VIEW IF EXISTS primary_transcript_region CASCADE;
  769. DROP VIEW IF EXISTS mrna_region CASCADE;
  770. DROP VIEW IF EXISTS utr_region CASCADE;
  771. DROP VIEW IF EXISTS rrna_primary_transcript_region CASCADE;
  772. DROP VIEW IF EXISTS polypeptide_region CASCADE;
  773. DROP VIEW IF EXISTS repeat_component CASCADE;
  774. DROP VIEW IF EXISTS spliceosomal_intron_region CASCADE;
  775. DROP VIEW IF EXISTS gene_component_region CASCADE;
  776. DROP VIEW IF EXISTS tmrna_region CASCADE;
  777. DROP VIEW IF EXISTS ltr_component CASCADE;
  778. DROP VIEW IF EXISTS three_prime_ltr_component CASCADE;
  779. DROP VIEW IF EXISTS five_prime_ltr_component CASCADE;
  780. DROP VIEW IF EXISTS cds_region CASCADE;
  781. DROP VIEW IF EXISTS exon_region CASCADE;
  782. DROP VIEW IF EXISTS homologous_region CASCADE;
  783. DROP VIEW IF EXISTS paralogous_region CASCADE;
  784. DROP VIEW IF EXISTS orthologous_region CASCADE;
  785. DROP VIEW IF EXISTS conserved CASCADE;
  786. DROP VIEW IF EXISTS homologous CASCADE;
  787. DROP VIEW IF EXISTS orthologous CASCADE;
  788. DROP VIEW IF EXISTS paralogous CASCADE;
  789. DROP VIEW IF EXISTS syntenic CASCADE;
  790. DROP VIEW IF EXISTS capped_primary_transcript CASCADE;
  791. DROP VIEW IF EXISTS capped_mrna CASCADE;
  792. DROP VIEW IF EXISTS mrna_attribute CASCADE;
  793. DROP VIEW IF EXISTS exemplar CASCADE;
  794. DROP VIEW IF EXISTS frameshift CASCADE;
  795. DROP VIEW IF EXISTS minus_1_frameshift CASCADE;
  796. DROP VIEW IF EXISTS minus_2_frameshift CASCADE;
  797. DROP VIEW IF EXISTS plus_1_frameshift CASCADE;
  798. DROP VIEW IF EXISTS plus_2_framshift CASCADE;
  799. DROP VIEW IF EXISTS trans_spliced CASCADE;
  800. DROP VIEW IF EXISTS polyadenylated_mrna CASCADE;
  801. DROP VIEW IF EXISTS trans_spliced_mrna CASCADE;
  802. DROP VIEW IF EXISTS edited_transcript CASCADE;
  803. DROP VIEW IF EXISTS edited_transcript_by_a_to_i_substitution CASCADE;
  804. DROP VIEW IF EXISTS bound_by_protein CASCADE;
  805. DROP VIEW IF EXISTS bound_by_nucleic_acid CASCADE;
  806. DROP VIEW IF EXISTS alternatively_spliced CASCADE;
  807. DROP VIEW IF EXISTS monocistronic CASCADE;
  808. DROP VIEW IF EXISTS dicistronic CASCADE;
  809. DROP VIEW IF EXISTS polycistronic CASCADE;
  810. DROP VIEW IF EXISTS recoded CASCADE;
  811. DROP VIEW IF EXISTS codon_redefined CASCADE;
  812. DROP VIEW IF EXISTS stop_codon_read_through CASCADE;
  813. DROP VIEW IF EXISTS stop_codon_redefined_as_pyrrolysine CASCADE;
  814. DROP VIEW IF EXISTS stop_codon_redefined_as_selenocysteine CASCADE;
  815. DROP VIEW IF EXISTS recoded_by_translational_bypass CASCADE;
  816. DROP VIEW IF EXISTS translationally_frameshifted CASCADE;
  817. DROP VIEW IF EXISTS maternally_imprinted_gene CASCADE;
  818. DROP VIEW IF EXISTS paternally_imprinted_gene CASCADE;
  819. DROP VIEW IF EXISTS post_translationally_regulated_gene CASCADE;
  820. DROP VIEW IF EXISTS negatively_autoregulated_gene CASCADE;
  821. DROP VIEW IF EXISTS positively_autoregulated_gene CASCADE;
  822. DROP VIEW IF EXISTS silenced CASCADE;
  823. DROP VIEW IF EXISTS silenced_by_dna_modification CASCADE;
  824. DROP VIEW IF EXISTS silenced_by_dna_methylation CASCADE;
  825. DROP VIEW IF EXISTS translationally_regulated_gene CASCADE;
  826. DROP VIEW IF EXISTS allelically_excluded_gene CASCADE;
  827. DROP VIEW IF EXISTS epigenetically_modified_gene CASCADE;
  828. DROP VIEW IF EXISTS transgene CASCADE;
  829. DROP VIEW IF EXISTS endogenous_retroviral_sequence CASCADE;
  830. DROP VIEW IF EXISTS rearranged_at_dna_level CASCADE;
  831. DROP VIEW IF EXISTS status CASCADE;
  832. DROP VIEW IF EXISTS independently_known CASCADE;
  833. DROP VIEW IF EXISTS supported_by_sequence_similarity CASCADE;
  834. DROP VIEW IF EXISTS supported_by_domain_match CASCADE;
  835. DROP VIEW IF EXISTS supported_by_est_or_cdna CASCADE;
  836. DROP VIEW IF EXISTS orphan CASCADE;
  837. DROP VIEW IF EXISTS predicted_by_ab_initio_computation CASCADE;
  838. DROP VIEW IF EXISTS asx_turn CASCADE;
  839. DROP VIEW IF EXISTS cloned_cdna_insert CASCADE;
  840. DROP VIEW IF EXISTS cloned_genomic_insert CASCADE;
  841. DROP VIEW IF EXISTS engineered_insert CASCADE;
  842. DROP VIEW IF EXISTS edited_mrna CASCADE;
  843. DROP VIEW IF EXISTS guide_rna_region CASCADE;
  844. DROP VIEW IF EXISTS anchor_region CASCADE;
  845. DROP VIEW IF EXISTS pre_edited_mrna CASCADE;
  846. DROP VIEW IF EXISTS intermediate CASCADE;
  847. DROP VIEW IF EXISTS mirna_target_site CASCADE;
  848. DROP VIEW IF EXISTS edited_cds CASCADE;
  849. DROP VIEW IF EXISTS vertebrate_immunoglobulin_t_cell_receptor_rearranged_segment CASCADE;
  850. DROP VIEW IF EXISTS vertebrate_ig_t_cell_receptor_rearranged_gene_cluster CASCADE;
  851. DROP VIEW IF EXISTS vertebrate_immune_system_gene_recombination_signal_feature CASCADE;
  852. DROP VIEW IF EXISTS recombinationally_rearranged CASCADE;
  853. DROP VIEW IF EXISTS recombinationally_rearranged_vertebrate_immune_system_gene CASCADE;
  854. DROP VIEW IF EXISTS attp_site CASCADE;
  855. DROP VIEW IF EXISTS attb_site CASCADE;
  856. DROP VIEW IF EXISTS attl_site CASCADE;
  857. DROP VIEW IF EXISTS attr_site CASCADE;
  858. DROP VIEW IF EXISTS integration_excision_site CASCADE;
  859. DROP VIEW IF EXISTS resolution_site CASCADE;
  860. DROP VIEW IF EXISTS inversion_site CASCADE;
  861. DROP VIEW IF EXISTS dif_site CASCADE;
  862. DROP VIEW IF EXISTS attc_site CASCADE;
  863. DROP VIEW IF EXISTS eukaryotic_terminator CASCADE;
  864. DROP VIEW IF EXISTS oriv CASCADE;
  865. DROP VIEW IF EXISTS oric CASCADE;
  866. DROP VIEW IF EXISTS dna_chromosome CASCADE;
  867. DROP VIEW IF EXISTS double_stranded_dna_chromosome CASCADE;
  868. DROP VIEW IF EXISTS single_stranded_dna_chromosome CASCADE;
  869. DROP VIEW IF EXISTS linear_double_stranded_dna_chromosome CASCADE;
  870. DROP VIEW IF EXISTS circular_double_stranded_dna_chromosome CASCADE;
  871. DROP VIEW IF EXISTS linear_single_stranded_dna_chromosome CASCADE;
  872. DROP VIEW IF EXISTS circular_single_stranded_dna_chromosome CASCADE;
  873. DROP VIEW IF EXISTS rna_chromosome CASCADE;
  874. DROP VIEW IF EXISTS single_stranded_rna_chromosome CASCADE;
  875. DROP VIEW IF EXISTS linear_single_stranded_rna_chromosome CASCADE;
  876. DROP VIEW IF EXISTS linear_double_stranded_rna_chromosome CASCADE;
  877. DROP VIEW IF EXISTS double_stranded_rna_chromosome CASCADE;
  878. DROP VIEW IF EXISTS circular_single_stranded_rna_chromosome CASCADE;
  879. DROP VIEW IF EXISTS circular_double_stranded_rna_chromosome CASCADE;
  880. DROP VIEW IF EXISTS insertion_sequence CASCADE;
  881. DROP VIEW IF EXISTS minicircle_gene CASCADE;
  882. DROP VIEW IF EXISTS cryptic CASCADE;
  883. DROP VIEW IF EXISTS anchor_binding_site CASCADE;
  884. DROP VIEW IF EXISTS template_region CASCADE;
  885. DROP VIEW IF EXISTS grna_encoding CASCADE;
  886. DROP VIEW IF EXISTS minicircle CASCADE;
  887. DROP VIEW IF EXISTS rho_dependent_bacterial_terminator CASCADE;
  888. DROP VIEW IF EXISTS rho_independent_bacterial_terminator CASCADE;
  889. DROP VIEW IF EXISTS strand_attribute CASCADE;
  890. DROP VIEW IF EXISTS single CASCADE;
  891. DROP VIEW IF EXISTS double CASCADE;
  892. DROP VIEW IF EXISTS topology_attribute CASCADE;
  893. DROP VIEW IF EXISTS linear CASCADE;
  894. DROP VIEW IF EXISTS circular CASCADE;
  895. DROP VIEW IF EXISTS class_ii_rna CASCADE;
  896. DROP VIEW IF EXISTS class_i_rna CASCADE;
  897. DROP VIEW IF EXISTS genomic_dna CASCADE;
  898. DROP VIEW IF EXISTS bac_cloned_genomic_insert CASCADE;
  899. DROP VIEW IF EXISTS consensus CASCADE;
  900. DROP VIEW IF EXISTS consensus_region CASCADE;
  901. DROP VIEW IF EXISTS consensus_mrna CASCADE;
  902. DROP VIEW IF EXISTS predicted_gene CASCADE;
  903. DROP VIEW IF EXISTS gene_fragment CASCADE;
  904. DROP VIEW IF EXISTS recursive_splice_site CASCADE;
  905. DROP VIEW IF EXISTS bac_end CASCADE;
  906. DROP VIEW IF EXISTS rrna_16s CASCADE;
  907. DROP VIEW IF EXISTS rrna_23s CASCADE;
  908. DROP VIEW IF EXISTS rrna_25s CASCADE;
  909. DROP VIEW IF EXISTS solo_ltr CASCADE;
  910. DROP VIEW IF EXISTS low_complexity CASCADE;
  911. DROP VIEW IF EXISTS low_complexity_region CASCADE;
  912. DROP VIEW IF EXISTS prophage CASCADE;
  913. DROP VIEW IF EXISTS cryptic_prophage CASCADE;
  914. DROP VIEW IF EXISTS tetraloop CASCADE;
  915. DROP VIEW IF EXISTS dna_constraint_sequence CASCADE;
  916. DROP VIEW IF EXISTS i_motif CASCADE;
  917. DROP VIEW IF EXISTS pna_oligo CASCADE;
  918. DROP VIEW IF EXISTS dnazyme CASCADE;
  919. DROP VIEW IF EXISTS mnp CASCADE;
  920. DROP VIEW IF EXISTS intron_domain CASCADE;
  921. DROP VIEW IF EXISTS wobble_base_pair CASCADE;
  922. DROP VIEW IF EXISTS internal_guide_sequence CASCADE;
  923. DROP VIEW IF EXISTS silent_mutation CASCADE;
  924. DROP VIEW IF EXISTS epitope CASCADE;
  925. DROP VIEW IF EXISTS copy_number_variation CASCADE;
  926. DROP VIEW IF EXISTS chromosome_breakpoint CASCADE;
  927. DROP VIEW IF EXISTS inversion_breakpoint CASCADE;
  928. DROP VIEW IF EXISTS allele CASCADE;
  929. DROP VIEW IF EXISTS haplotype CASCADE;
  930. DROP VIEW IF EXISTS polymorphic_sequence_variant CASCADE;
  931. DROP VIEW IF EXISTS genome CASCADE;
  932. DROP VIEW IF EXISTS so_genotype CASCADE;
  933. DROP VIEW IF EXISTS diplotype CASCADE;
  934. DROP VIEW IF EXISTS direction_attribute CASCADE;
  935. DROP VIEW IF EXISTS forward CASCADE;
  936. DROP VIEW IF EXISTS reverse CASCADE;
  937. DROP VIEW IF EXISTS mitochondrial_dna CASCADE;
  938. DROP VIEW IF EXISTS chloroplast_dna CASCADE;
  939. DROP VIEW IF EXISTS mirtron CASCADE;
  940. DROP VIEW IF EXISTS pirna CASCADE;
  941. DROP VIEW IF EXISTS arginyl_trna CASCADE;
  942. DROP VIEW IF EXISTS mobile_genetic_element CASCADE;
  943. DROP VIEW IF EXISTS extrachromosomal_mobile_genetic_element CASCADE;
  944. DROP VIEW IF EXISTS integrated_mobile_genetic_element CASCADE;
  945. DROP VIEW IF EXISTS integrated_plasmid CASCADE;
  946. DROP VIEW IF EXISTS viral_sequence CASCADE;
  947. DROP VIEW IF EXISTS phage_sequence CASCADE;
  948. DROP VIEW IF EXISTS attctn_site CASCADE;
  949. DROP VIEW IF EXISTS nuclear_mt_pseudogene CASCADE;
  950. DROP VIEW IF EXISTS cointegrated_plasmid CASCADE;
  951. DROP VIEW IF EXISTS irlinv_site CASCADE;
  952. DROP VIEW IF EXISTS irrinv_site CASCADE;
  953. DROP VIEW IF EXISTS inversion_site_part CASCADE;
  954. DROP VIEW IF EXISTS defective_conjugative_transposon CASCADE;
  955. DROP VIEW IF EXISTS repeat_fragment CASCADE;
  956. DROP VIEW IF EXISTS transposon_fragment CASCADE;
  957. DROP VIEW IF EXISTS transcriptional_cis_regulatory_region CASCADE;
  958. DROP VIEW IF EXISTS splicing_regulatory_region CASCADE;
  959. DROP VIEW IF EXISTS promoter_targeting_sequence CASCADE;
  960. DROP VIEW IF EXISTS sequence_alteration CASCADE;
  961. DROP VIEW IF EXISTS sequence_variant CASCADE;
  962. DROP VIEW IF EXISTS propeptide_cleavage_site CASCADE;
  963. DROP VIEW IF EXISTS propeptide CASCADE;
  964. DROP VIEW IF EXISTS immature_peptide_region CASCADE;
  965. DROP VIEW IF EXISTS active_peptide CASCADE;
  966. DROP VIEW IF EXISTS compositionally_biased_region_of_peptide CASCADE;
  967. DROP VIEW IF EXISTS polypeptide_motif CASCADE;
  968. DROP VIEW IF EXISTS polypeptide_repeat CASCADE;
  969. DROP VIEW IF EXISTS polypeptide_structural_region CASCADE;
  970. DROP VIEW IF EXISTS membrane_structure CASCADE;
  971. DROP VIEW IF EXISTS extramembrane_polypeptide_region CASCADE;
  972. DROP VIEW IF EXISTS cytoplasmic_polypeptide_region CASCADE;
  973. DROP VIEW IF EXISTS non_cytoplasmic_polypeptide_region CASCADE;
  974. DROP VIEW IF EXISTS intramembrane_polypeptide_region CASCADE;
  975. DROP VIEW IF EXISTS membrane_peptide_loop CASCADE;
  976. DROP VIEW IF EXISTS transmembrane_polypeptide_region CASCADE;
  977. DROP VIEW IF EXISTS polypeptide_secondary_structure CASCADE;
  978. DROP VIEW IF EXISTS polypeptide_structural_motif CASCADE;
  979. DROP VIEW IF EXISTS coiled_coil CASCADE;
  980. DROP VIEW IF EXISTS helix_turn_helix CASCADE;
  981. DROP VIEW IF EXISTS polypeptide_sequencing_information CASCADE;
  982. DROP VIEW IF EXISTS non_adjacent_residues CASCADE;
  983. DROP VIEW IF EXISTS non_terminal_residue CASCADE;
  984. DROP VIEW IF EXISTS sequence_conflict CASCADE;
  985. DROP VIEW IF EXISTS sequence_uncertainty CASCADE;
  986. DROP VIEW IF EXISTS post_translationally_modified_region CASCADE;
  987. DROP VIEW IF EXISTS polypeptide_metal_contact CASCADE;
  988. DROP VIEW IF EXISTS protein_protein_contact CASCADE;
  989. DROP VIEW IF EXISTS polypeptide_calcium_ion_contact_site CASCADE;
  990. DROP VIEW IF EXISTS polypeptide_cobalt_ion_contact_site CASCADE;
  991. DROP VIEW IF EXISTS polypeptide_copper_ion_contact_site CASCADE;
  992. DROP VIEW IF EXISTS polypeptide_iron_ion_contact_site CASCADE;
  993. DROP VIEW IF EXISTS polypeptide_magnesium_ion_contact_site CASCADE;
  994. DROP VIEW IF EXISTS polypeptide_manganese_ion_contact_site CASCADE;
  995. DROP VIEW IF EXISTS polypeptide_molybdenum_ion_contact_site CASCADE;
  996. DROP VIEW IF EXISTS polypeptide_nickel_ion_contact_site CASCADE;
  997. DROP VIEW IF EXISTS polypeptide_tungsten_ion_contact_site CASCADE;
  998. DROP VIEW IF EXISTS polypeptide_zinc_ion_contact_site CASCADE;
  999. DROP VIEW IF EXISTS catalytic_residue CASCADE;
  1000. DROP VIEW IF EXISTS polypeptide_ligand_contact CASCADE;
  1001. DROP VIEW IF EXISTS asx_motif CASCADE;
  1002. DROP VIEW IF EXISTS beta_bulge CASCADE;
  1003. DROP VIEW IF EXISTS beta_bulge_loop CASCADE;
  1004. DROP VIEW IF EXISTS beta_bulge_loop_five CASCADE;
  1005. DROP VIEW IF EXISTS beta_bulge_loop_six CASCADE;
  1006. DROP VIEW IF EXISTS beta_strand CASCADE;
  1007. DROP VIEW IF EXISTS antiparallel_beta_strand CASCADE;
  1008. DROP VIEW IF EXISTS parallel_beta_strand CASCADE;
  1009. DROP VIEW IF EXISTS peptide_helix CASCADE;
  1010. DROP VIEW IF EXISTS left_handed_peptide_helix CASCADE;
  1011. DROP VIEW IF EXISTS right_handed_peptide_helix CASCADE;
  1012. DROP VIEW IF EXISTS alpha_helix CASCADE;
  1013. DROP VIEW IF EXISTS pi_helix CASCADE;
  1014. DROP VIEW IF EXISTS three_ten_helix CASCADE;
  1015. DROP VIEW IF EXISTS polypeptide_nest_motif CASCADE;
  1016. DROP VIEW IF EXISTS polypeptide_nest_left_right_motif CASCADE;
  1017. DROP VIEW IF EXISTS polypeptide_nest_right_left_motif CASCADE;
  1018. DROP VIEW IF EXISTS schellmann_loop CASCADE;
  1019. DROP VIEW IF EXISTS schellmann_loop_seven CASCADE;
  1020. DROP VIEW IF EXISTS schellmann_loop_six CASCADE;
  1021. DROP VIEW IF EXISTS serine_threonine_motif CASCADE;
  1022. DROP VIEW IF EXISTS serine_threonine_staple_motif CASCADE;
  1023. DROP VIEW IF EXISTS polypeptide_turn_motif CASCADE;
  1024. DROP VIEW IF EXISTS asx_turn_left_handed_type_one CASCADE;
  1025. DROP VIEW IF EXISTS asx_turn_left_handed_type_two CASCADE;
  1026. DROP VIEW IF EXISTS asx_turn_right_handed_type_two CASCADE;
  1027. DROP VIEW IF EXISTS asx_turn_right_handed_type_one CASCADE;
  1028. DROP VIEW IF EXISTS beta_turn CASCADE;
  1029. DROP VIEW IF EXISTS beta_turn_left_handed_type_one CASCADE;
  1030. DROP VIEW IF EXISTS beta_turn_left_handed_type_two CASCADE;
  1031. DROP VIEW IF EXISTS beta_turn_right_handed_type_one CASCADE;
  1032. DROP VIEW IF EXISTS beta_turn_right_handed_type_two CASCADE;
  1033. DROP VIEW IF EXISTS gamma_turn CASCADE;
  1034. DROP VIEW IF EXISTS gamma_turn_classic CASCADE;
  1035. DROP VIEW IF EXISTS gamma_turn_inverse CASCADE;
  1036. DROP VIEW IF EXISTS serine_threonine_turn CASCADE;
  1037. DROP VIEW IF EXISTS st_turn_left_handed_type_one CASCADE;
  1038. DROP VIEW IF EXISTS st_turn_left_handed_type_two CASCADE;
  1039. DROP VIEW IF EXISTS st_turn_right_handed_type_one CASCADE;
  1040. DROP VIEW IF EXISTS st_turn_right_handed_type_two CASCADE;
  1041. DROP VIEW IF EXISTS polypeptide_variation_site CASCADE;
  1042. DROP VIEW IF EXISTS natural_variant_site CASCADE;
  1043. DROP VIEW IF EXISTS mutated_variant_site CASCADE;
  1044. DROP VIEW IF EXISTS alternate_sequence_site CASCADE;
  1045. DROP VIEW IF EXISTS beta_turn_type_six CASCADE;
  1046. DROP VIEW IF EXISTS beta_turn_type_six_a CASCADE;
  1047. DROP VIEW IF EXISTS beta_turn_type_six_a_one CASCADE;
  1048. DROP VIEW IF EXISTS beta_turn_type_six_a_two CASCADE;
  1049. DROP VIEW IF EXISTS beta_turn_type_six_b CASCADE;
  1050. DROP VIEW IF EXISTS beta_turn_type_eight CASCADE;
  1051. DROP VIEW IF EXISTS dre_motif CASCADE;
  1052. DROP VIEW IF EXISTS dmv4_motif CASCADE;
  1053. DROP VIEW IF EXISTS e_box_motif CASCADE;
  1054. DROP VIEW IF EXISTS dmv5_motif CASCADE;
  1055. DROP VIEW IF EXISTS dmv3_motif CASCADE;
  1056. DROP VIEW IF EXISTS dmv2_motif CASCADE;
  1057. DROP VIEW IF EXISTS mte CASCADE;
  1058. DROP VIEW IF EXISTS inr1_motif CASCADE;
  1059. DROP VIEW IF EXISTS dpe1_motif CASCADE;
  1060. DROP VIEW IF EXISTS dmv1_motif CASCADE;
  1061. DROP VIEW IF EXISTS gaga_motif CASCADE;
  1062. DROP VIEW IF EXISTS ndm2_motif CASCADE;
  1063. DROP VIEW IF EXISTS ndm3_motif CASCADE;
  1064. DROP VIEW IF EXISTS ds_rna_viral_sequence CASCADE;
  1065. DROP VIEW IF EXISTS polinton CASCADE;
  1066. DROP VIEW IF EXISTS rrna_21s CASCADE;
  1067. DROP VIEW IF EXISTS trna_region CASCADE;
  1068. DROP VIEW IF EXISTS anticodon_loop CASCADE;
  1069. DROP VIEW IF EXISTS anticodon CASCADE;
  1070. DROP VIEW IF EXISTS cca_tail CASCADE;
  1071. DROP VIEW IF EXISTS dhu_loop CASCADE;
  1072. DROP VIEW IF EXISTS t_loop CASCADE;
  1073. DROP VIEW IF EXISTS pyrrolysine_trna_primary_transcript CASCADE;
  1074. DROP VIEW IF EXISTS u3_snorna CASCADE;
  1075. DROP VIEW IF EXISTS au_rich_element CASCADE;
  1076. DROP VIEW IF EXISTS bruno_response_element CASCADE;
  1077. DROP VIEW IF EXISTS iron_responsive_element CASCADE;
  1078. DROP VIEW IF EXISTS morpholino_backbone CASCADE;
  1079. DROP VIEW IF EXISTS pna CASCADE;
  1080. DROP VIEW IF EXISTS enzymatic CASCADE;
  1081. DROP VIEW IF EXISTS ribozymic CASCADE;
  1082. DROP VIEW IF EXISTS pseudouridylation_guide_snorna CASCADE;
  1083. DROP VIEW IF EXISTS lna CASCADE;
  1084. DROP VIEW IF EXISTS lna_oligo CASCADE;
  1085. DROP VIEW IF EXISTS tna CASCADE;
  1086. DROP VIEW IF EXISTS tna_oligo CASCADE;
  1087. DROP VIEW IF EXISTS gna CASCADE;
  1088. DROP VIEW IF EXISTS gna_oligo CASCADE;
  1089. DROP VIEW IF EXISTS r_gna CASCADE;
  1090. DROP VIEW IF EXISTS r_gna_oligo CASCADE;
  1091. DROP VIEW IF EXISTS s_gna CASCADE;
  1092. DROP VIEW IF EXISTS s_gna_oligo CASCADE;
  1093. DROP VIEW IF EXISTS ds_dna_viral_sequence CASCADE;
  1094. DROP VIEW IF EXISTS ss_rna_viral_sequence CASCADE;
  1095. DROP VIEW IF EXISTS negative_sense_ssrna_viral_sequence CASCADE;
  1096. DROP VIEW IF EXISTS positive_sense_ssrna_viral_sequence CASCADE;
  1097. DROP VIEW IF EXISTS ambisense_ssrna_viral_sequence CASCADE;
  1098. DROP VIEW IF EXISTS rna_polymerase_promoter CASCADE;
  1099. DROP VIEW IF EXISTS phage_rna_polymerase_promoter CASCADE;
  1100. DROP VIEW IF EXISTS sp6_rna_polymerase_promoter CASCADE;
  1101. DROP VIEW IF EXISTS t3_rna_polymerase_promoter CASCADE;
  1102. DROP VIEW IF EXISTS t7_rna_polymerase_promoter CASCADE;
  1103. DROP VIEW IF EXISTS five_prime_est CASCADE;
  1104. DROP VIEW IF EXISTS three_prime_est CASCADE;
  1105. DROP VIEW IF EXISTS translational_frameshift CASCADE;
  1106. DROP VIEW IF EXISTS plus_1_translational_frameshift CASCADE;
  1107. DROP VIEW IF EXISTS plus_2_translational_frameshift CASCADE;
  1108. DROP VIEW IF EXISTS group_iii_intron CASCADE;
  1109. DROP VIEW IF EXISTS noncoding_region_of_exon CASCADE;
  1110. DROP VIEW IF EXISTS coding_region_of_exon CASCADE;
  1111. DROP VIEW IF EXISTS endonuclease_spliced_intron CASCADE;
  1112. DROP VIEW IF EXISTS transgenic_insertion CASCADE;
  1113. DROP VIEW IF EXISTS retrogene CASCADE;
  1114. DROP VIEW IF EXISTS silenced_by_rna_interference CASCADE;
  1115. DROP VIEW IF EXISTS silenced_by_histone_modification CASCADE;
  1116. DROP VIEW IF EXISTS silenced_by_histone_methylation CASCADE;
  1117. DROP VIEW IF EXISTS silenced_by_histone_deacetylation CASCADE;
  1118. DROP VIEW IF EXISTS gene_silenced_by_rna_interference CASCADE;
  1119. DROP VIEW IF EXISTS gene_silenced_by_histone_modification CASCADE;
  1120. DROP VIEW IF EXISTS gene_silenced_by_histone_methylation CASCADE;
  1121. DROP VIEW IF EXISTS gene_silenced_by_histone_deacetylation CASCADE;
  1122. DROP VIEW IF EXISTS dihydrouridine CASCADE;
  1123. DROP VIEW IF EXISTS pseudouridine CASCADE;
  1124. DROP VIEW IF EXISTS inosine CASCADE;
  1125. DROP VIEW IF EXISTS seven_methylguanine CASCADE;
  1126. DROP VIEW IF EXISTS ribothymidine CASCADE;
  1127. DROP VIEW IF EXISTS methylinosine CASCADE;
  1128. DROP VIEW IF EXISTS mobile CASCADE;
  1129. DROP VIEW IF EXISTS replicon CASCADE;
  1130. DROP VIEW IF EXISTS base CASCADE;
  1131. DROP VIEW IF EXISTS amino_acid CASCADE;
  1132. DROP VIEW IF EXISTS major_tss CASCADE;
  1133. DROP VIEW IF EXISTS minor_tss CASCADE;
  1134. DROP VIEW IF EXISTS tss_region CASCADE;
  1135. DROP VIEW IF EXISTS encodes_alternate_transcription_start_sites CASCADE;
  1136. DROP VIEW IF EXISTS mirna_primary_transcript_region CASCADE;
  1137. DROP VIEW IF EXISTS pre_mirna CASCADE;
  1138. DROP VIEW IF EXISTS mirna_stem CASCADE;
  1139. DROP VIEW IF EXISTS mirna_loop CASCADE;
  1140. DROP VIEW IF EXISTS synthetic_oligo CASCADE;
  1141. DROP VIEW IF EXISTS assembly CASCADE;
  1142. DROP VIEW IF EXISTS fragment_assembly CASCADE;
  1143. DROP VIEW IF EXISTS fingerprint_map CASCADE;
  1144. DROP VIEW IF EXISTS sts_map CASCADE;
  1145. DROP VIEW IF EXISTS rh_map CASCADE;
  1146. DROP VIEW IF EXISTS sonicate_fragment CASCADE;
  1147. DROP VIEW IF EXISTS polyploid CASCADE;
  1148. DROP VIEW IF EXISTS autopolyploid CASCADE;
  1149. DROP VIEW IF EXISTS allopolyploid CASCADE;
  1150. DROP VIEW IF EXISTS homing_endonuclease_binding_site CASCADE;
  1151. DROP VIEW IF EXISTS octamer_motif CASCADE;
  1152. DROP VIEW IF EXISTS apicoplast_chromosome CASCADE;
  1153. DROP VIEW IF EXISTS sequence_collection CASCADE;
  1154. DROP VIEW IF EXISTS overlapping_feature_set CASCADE;
  1155. DROP VIEW IF EXISTS overlapping_est_set CASCADE;
  1156. DROP VIEW IF EXISTS ncrna_gene CASCADE;
  1157. DROP VIEW IF EXISTS grna_gene CASCADE;
  1158. DROP VIEW IF EXISTS mirna_gene CASCADE;
  1159. DROP VIEW IF EXISTS scrna_gene CASCADE;
  1160. DROP VIEW IF EXISTS snorna_gene CASCADE;
  1161. DROP VIEW IF EXISTS snrna_gene CASCADE;
  1162. DROP VIEW IF EXISTS srp_rna_gene CASCADE;
  1163. DROP VIEW IF EXISTS strna_gene CASCADE;
  1164. DROP VIEW IF EXISTS tmrna_gene CASCADE;
  1165. DROP VIEW IF EXISTS trna_gene CASCADE;
  1166. DROP VIEW IF EXISTS modified_adenosine CASCADE;
  1167. DROP VIEW IF EXISTS modified_inosine CASCADE;
  1168. DROP VIEW IF EXISTS modified_cytidine CASCADE;
  1169. DROP VIEW IF EXISTS modified_guanosine CASCADE;
  1170. DROP VIEW IF EXISTS modified_uridine CASCADE;
  1171. DROP VIEW IF EXISTS one_methylinosine CASCADE;
  1172. DROP VIEW IF EXISTS one_two_prime_o_dimethylinosine CASCADE;
  1173. DROP VIEW IF EXISTS two_prime_o_methylinosine CASCADE;
  1174. DROP VIEW IF EXISTS three_methylcytidine CASCADE;
  1175. DROP VIEW IF EXISTS five_methylcytidine CASCADE;
  1176. DROP VIEW IF EXISTS two_prime_o_methylcytidine CASCADE;
  1177. DROP VIEW IF EXISTS two_thiocytidine CASCADE;
  1178. DROP VIEW IF EXISTS n4_acetylcytidine CASCADE;
  1179. DROP VIEW IF EXISTS five_formylcytidine CASCADE;
  1180. DROP VIEW IF EXISTS five_two_prime_o_dimethylcytidine CASCADE;
  1181. DROP VIEW IF EXISTS n4_acetyl_2_prime_o_methylcytidine CASCADE;
  1182. DROP VIEW IF EXISTS lysidine CASCADE;
  1183. DROP VIEW IF EXISTS n4_methylcytidine CASCADE;
  1184. DROP VIEW IF EXISTS n4_2_prime_o_dimethylcytidine CASCADE;
  1185. DROP VIEW IF EXISTS five_hydroxymethylcytidine CASCADE;
  1186. DROP VIEW IF EXISTS five_formyl_two_prime_o_methylcytidine CASCADE;
  1187. DROP VIEW IF EXISTS n4_n4_2_prime_o_trimethylcytidine CASCADE;
  1188. DROP VIEW IF EXISTS one_methyladenosine CASCADE;
  1189. DROP VIEW IF EXISTS two_methyladenosine CASCADE;
  1190. DROP VIEW IF EXISTS n6_methyladenosine CASCADE;
  1191. DROP VIEW IF EXISTS two_prime_o_methyladenosine CASCADE;
  1192. DROP VIEW IF EXISTS two_methylthio_n6_methyladenosine CASCADE;
  1193. DROP VIEW IF EXISTS n6_isopentenyladenosine CASCADE;
  1194. DROP VIEW IF EXISTS two_methylthio_n6_isopentenyladenosine CASCADE;
  1195. DROP VIEW IF EXISTS n6_cis_hydroxyisopentenyl_adenosine CASCADE;
  1196. DROP VIEW IF EXISTS two_methylthio_n6_cis_hydroxyisopentenyl_adenosine CASCADE;
  1197. DROP VIEW IF EXISTS n6_glycinylcarbamoyladenosine CASCADE;
  1198. DROP VIEW IF EXISTS n6_threonylcarbamoyladenosine CASCADE;
  1199. DROP VIEW IF EXISTS two_methylthio_n6_threonyl_carbamoyladenosine CASCADE;
  1200. DROP VIEW IF EXISTS n6_methyl_n6_threonylcarbamoyladenosine CASCADE;
  1201. DROP VIEW IF EXISTS n6_hydroxynorvalylcarbamoyladenosine CASCADE;
  1202. DROP VIEW IF EXISTS two_methylthio_n6_hydroxynorvalyl_carbamoyladenosine CASCADE;
  1203. DROP VIEW IF EXISTS two_prime_o_riboA_phosphate CASCADE;
  1204. DROP VIEW IF EXISTS n6_n6_dimethyladenosine CASCADE;
  1205. DROP VIEW IF EXISTS n6_2_prime_o_dimethyladenosine CASCADE;
  1206. DROP VIEW IF EXISTS n6_n6_2_prime_o_trimethyladenosine CASCADE;
  1207. DROP VIEW IF EXISTS one_two_prime_o_dimethyladenosine CASCADE;
  1208. DROP VIEW IF EXISTS n6_acetyladenosine CASCADE;
  1209. DROP VIEW IF EXISTS seven_deazaguanosine CASCADE;
  1210. DROP VIEW IF EXISTS queuosine CASCADE;
  1211. DROP VIEW IF EXISTS epoxyqueuosine CASCADE;
  1212. DROP VIEW IF EXISTS galactosyl_queuosine CASCADE;
  1213. DROP VIEW IF EXISTS mannosyl_queuosine CASCADE;
  1214. DROP VIEW IF EXISTS seven_cyano_seven_deazaguanosine CASCADE;
  1215. DROP VIEW IF EXISTS seven_aminomethyl_seven_deazaguanosine CASCADE;
  1216. DROP VIEW IF EXISTS archaeosine CASCADE;
  1217. DROP VIEW IF EXISTS one_methylguanosine CASCADE;
  1218. DROP VIEW IF EXISTS n2_methylguanosine CASCADE;
  1219. DROP VIEW IF EXISTS seven_methylguanosine CASCADE;
  1220. DROP VIEW IF EXISTS two_prime_o_methylguanosine CASCADE;
  1221. DROP VIEW IF EXISTS n2_n2_dimethylguanosine CASCADE;
  1222. DROP VIEW IF EXISTS n2_2_prime_o_dimethylguanosine CASCADE;
  1223. DROP VIEW IF EXISTS n2_n2_2_prime_o_trimethylguanosine CASCADE;
  1224. DROP VIEW IF EXISTS two_prime_o_ribosylguanosine_phosphate CASCADE;
  1225. DROP VIEW IF EXISTS wybutosine CASCADE;
  1226. DROP VIEW IF EXISTS peroxywybutosine CASCADE;
  1227. DROP VIEW IF EXISTS hydroxywybutosine CASCADE;
  1228. DROP VIEW IF EXISTS undermodified_hydroxywybutosine CASCADE;
  1229. DROP VIEW IF EXISTS wyosine CASCADE;
  1230. DROP VIEW IF EXISTS methylwyosine CASCADE;
  1231. DROP VIEW IF EXISTS n2_7_dimethylguanosine CASCADE;
  1232. DROP VIEW IF EXISTS n2_n2_7_trimethylguanosine CASCADE;
  1233. DROP VIEW IF EXISTS one_two_prime_o_dimethylguanosine CASCADE;
  1234. DROP VIEW IF EXISTS four_demethylwyosine CASCADE;
  1235. DROP VIEW IF EXISTS isowyosine CASCADE;
  1236. DROP VIEW IF EXISTS n2_7_2prirme_o_trimethylguanosine CASCADE;
  1237. DROP VIEW IF EXISTS five_methyluridine CASCADE;
  1238. DROP VIEW IF EXISTS two_prime_o_methyluridine CASCADE;
  1239. DROP VIEW IF EXISTS five_two_prime_o_dimethyluridine CASCADE;
  1240. DROP VIEW IF EXISTS one_methylpseudouridine CASCADE;
  1241. DROP VIEW IF EXISTS two_prime_o_methylpseudouridine CASCADE;
  1242. DROP VIEW IF EXISTS two_thiouridine CASCADE;
  1243. DROP VIEW IF EXISTS four_thiouridine CASCADE;
  1244. DROP VIEW IF EXISTS five_methyl_2_thiouridine CASCADE;
  1245. DROP VIEW IF EXISTS two_thio_two_prime_o_methyluridine CASCADE;
  1246. DROP VIEW IF EXISTS three_three_amino_three_carboxypropyl_uridine CASCADE;
  1247. DROP VIEW IF EXISTS five_hydroxyuridine CASCADE;
  1248. DROP VIEW IF EXISTS five_methoxyuridine CASCADE;
  1249. DROP VIEW IF EXISTS uridine_five_oxyacetic_acid CASCADE;
  1250. DROP VIEW IF EXISTS uridine_five_oxyacetic_acid_methyl_ester CASCADE;
  1251. DROP VIEW IF EXISTS five_carboxyhydroxymethyl_uridine CASCADE;
  1252. DROP VIEW IF EXISTS five_carboxyhydroxymethyl_uridine_methyl_ester CASCADE;
  1253. DROP VIEW IF EXISTS five_methoxycarbonylmethyluridine CASCADE;
  1254. DROP VIEW IF EXISTS five_methoxycarbonylmethyl_two_prime_o_methyluridine CASCADE;
  1255. DROP VIEW IF EXISTS five_mcm_2_thiouridine CASCADE;
  1256. DROP VIEW IF EXISTS five_aminomethyl_two_thiouridine CASCADE;
  1257. DROP VIEW IF EXISTS five_methylaminomethyluridine CASCADE;
  1258. DROP VIEW IF EXISTS five_mam_2_thiouridine CASCADE;
  1259. DROP VIEW IF EXISTS five_methylaminomethyl_two_selenouridine CASCADE;
  1260. DROP VIEW IF EXISTS five_carbamoylmethyluridine CASCADE;
  1261. DROP VIEW IF EXISTS five_cm_2_prime_o_methU CASCADE;
  1262. DROP VIEW IF EXISTS five_carboxymethylaminomethyluridine CASCADE;
  1263. DROP VIEW IF EXISTS five_carboxymethylaminomethyl_two_prime_o_methyluridine CASCADE;
  1264. DROP VIEW IF EXISTS five_carboxymethylaminomethyl_two_thiouridine CASCADE;
  1265. DROP VIEW IF EXISTS three_methyluridine CASCADE;
  1266. DROP VIEW IF EXISTS one_methyl_3_3_amino_three_carboxypropyl_pseudouridine CASCADE;
  1267. DROP VIEW IF EXISTS five_carboxymethyluridine CASCADE;
  1268. DROP VIEW IF EXISTS three_two_prime_o_dimethyluridine CASCADE;
  1269. DROP VIEW IF EXISTS five_methyldihydrouridine CASCADE;
  1270. DROP VIEW IF EXISTS three_methylpseudouridine CASCADE;
  1271. DROP VIEW IF EXISTS five_taurinomethyluridine CASCADE;
  1272. DROP VIEW IF EXISTS five_taurinomethyl_two_thiouridine CASCADE;
  1273. DROP VIEW IF EXISTS five_isopentenylaminomethyl_uridine CASCADE;
  1274. DROP VIEW IF EXISTS five_isopentenylaminomethyl_two_thiouridine CASCADE;
  1275. DROP VIEW IF EXISTS five_isopentenylaminomethyl_two_prime_o_methyluridine CASCADE;
  1276. DROP VIEW IF EXISTS histone_binding_site CASCADE;
  1277. DROP VIEW IF EXISTS cds_fragment CASCADE;
  1278. DROP VIEW IF EXISTS modified_amino_acid_feature CASCADE;
  1279. DROP VIEW IF EXISTS modified_glycine CASCADE;
  1280. DROP VIEW IF EXISTS modified_l_alanine CASCADE;
  1281. DROP VIEW IF EXISTS modified_l_asparagine CASCADE;
  1282. DROP VIEW IF EXISTS modified_l_aspartic_acid CASCADE;
  1283. DROP VIEW IF EXISTS modified_l_cysteine CASCADE;
  1284. DROP VIEW IF EXISTS modified_l_glutamic_acid CASCADE;
  1285. DROP VIEW IF EXISTS modified_l_threonine CASCADE;
  1286. DROP VIEW IF EXISTS modified_l_tryptophan CASCADE;
  1287. DROP VIEW IF EXISTS modified_l_glutamine CASCADE;
  1288. DROP VIEW IF EXISTS modified_l_methionine CASCADE;
  1289. DROP VIEW IF EXISTS modified_l_isoleucine CASCADE;
  1290. DROP VIEW IF EXISTS modified_l_phenylalanine CASCADE;
  1291. DROP VIEW IF EXISTS modified_l_histidine CASCADE;
  1292. DROP VIEW IF EXISTS modified_l_serine CASCADE;
  1293. DROP VIEW IF EXISTS modified_l_lysine CASCADE;
  1294. DROP VIEW IF EXISTS modified_l_leucine CASCADE;
  1295. DROP VIEW IF EXISTS modified_l_selenocysteine CASCADE;
  1296. DROP VIEW IF EXISTS modified_l_valine CASCADE;
  1297. DROP VIEW IF EXISTS modified_l_proline CASCADE;
  1298. DROP VIEW IF EXISTS modified_l_tyrosine CASCADE;
  1299. DROP VIEW IF EXISTS modified_l_arginine CASCADE;
  1300. DROP VIEW IF EXISTS peptidyl CASCADE;
  1301. DROP VIEW IF EXISTS cleaved_for_gpi_anchor_region CASCADE;
  1302. DROP VIEW IF EXISTS biomaterial_region CASCADE;
  1303. DROP VIEW IF EXISTS experimental_feature CASCADE;
  1304. DROP VIEW IF EXISTS biological_region CASCADE;
  1305. DROP VIEW IF EXISTS topologically_defined_region CASCADE;
  1306. DROP VIEW IF EXISTS translocation_breakpoint CASCADE;
  1307. DROP VIEW IF EXISTS insertion_breakpoint CASCADE;
  1308. DROP VIEW IF EXISTS deletion_breakpoint CASCADE;
  1309. DROP VIEW IF EXISTS five_prime_flanking_region CASCADE;
  1310. DROP VIEW IF EXISTS three_prime_flanking_region CASCADE;
  1311. DROP VIEW IF EXISTS transcribed_fragment CASCADE;
  1312. DROP VIEW IF EXISTS cis_splice_site CASCADE;
  1313. DROP VIEW IF EXISTS trans_splice_site CASCADE;
  1314. DROP VIEW IF EXISTS splice_junction CASCADE;
  1315. DROP VIEW IF EXISTS conformational_switch CASCADE;
  1316. DROP VIEW IF EXISTS dye_terminator_read CASCADE;
  1317. DROP VIEW IF EXISTS pyrosequenced_read CASCADE;
  1318. DROP VIEW IF EXISTS ligation_based_read CASCADE;
  1319. DROP VIEW IF EXISTS polymerase_synthesis_read CASCADE;
  1320. DROP VIEW IF EXISTS cis_regulatory_frameshift_element CASCADE;
  1321. DROP VIEW IF EXISTS expressed_sequence_assembly CASCADE;
  1322. DROP VIEW IF EXISTS dna_binding_site CASCADE;
  1323. DROP VIEW IF EXISTS cryptic_gene CASCADE;
  1324. DROP VIEW IF EXISTS three_prime_race_clone CASCADE;
  1325. DROP VIEW IF EXISTS cassette_pseudogene CASCADE;
  1326. DROP VIEW IF EXISTS alanine CASCADE;
  1327. DROP VIEW IF EXISTS valine CASCADE;
  1328. DROP VIEW IF EXISTS leucine CASCADE;
  1329. DROP VIEW IF EXISTS isoleucine CASCADE;
  1330. DROP VIEW IF EXISTS proline CASCADE;
  1331. DROP VIEW IF EXISTS tryptophan CASCADE;
  1332. DROP VIEW IF EXISTS phenylalanine CASCADE;
  1333. DROP VIEW IF EXISTS methionine CASCADE;
  1334. DROP VIEW IF EXISTS glycine CASCADE;
  1335. DROP VIEW IF EXISTS serine CASCADE;
  1336. DROP VIEW IF EXISTS threonine CASCADE;
  1337. DROP VIEW IF EXISTS tyrosine CASCADE;
  1338. DROP VIEW IF EXISTS cysteine CASCADE;
  1339. DROP VIEW IF EXISTS glutamine CASCADE;
  1340. DROP VIEW IF EXISTS asparagine CASCADE;
  1341. DROP VIEW IF EXISTS lysine CASCADE;
  1342. DROP VIEW IF EXISTS arginine CASCADE;
  1343. DROP VIEW IF EXISTS histidine CASCADE;
  1344. DROP VIEW IF EXISTS aspartic_acid CASCADE;
  1345. DROP VIEW IF EXISTS glutamic_acid CASCADE;
  1346. DROP VIEW IF EXISTS selenocysteine CASCADE;
  1347. DROP VIEW IF EXISTS pyrrolysine CASCADE;
  1348. DROP VIEW IF EXISTS transcribed_cluster CASCADE;
  1349. DROP VIEW IF EXISTS unigene_cluster CASCADE;
  1350. DROP VIEW IF EXISTS crispr CASCADE;
  1351. DROP VIEW IF EXISTS insulator_binding_site CASCADE;
  1352. DROP VIEW IF EXISTS enhancer_binding_site CASCADE;
  1353. DROP VIEW IF EXISTS contig_collection CASCADE;
  1354. DROP VIEW IF EXISTS lincrna CASCADE;
  1355. DROP VIEW IF EXISTS ust CASCADE;
  1356. DROP VIEW IF EXISTS three_prime_ust CASCADE;
  1357. DROP VIEW IF EXISTS five_prime_ust CASCADE;
  1358. DROP VIEW IF EXISTS rst CASCADE;
  1359. DROP VIEW IF EXISTS three_prime_rst CASCADE;
  1360. DROP VIEW IF EXISTS five_prime_rst CASCADE;
  1361. DROP VIEW IF EXISTS ust_match CASCADE;
  1362. DROP VIEW IF EXISTS rst_match CASCADE;
  1363. DROP VIEW IF EXISTS primer_match CASCADE;
  1364. DROP VIEW IF EXISTS mirna_antiguide CASCADE;
  1365. DROP VIEW IF EXISTS trans_splice_junction CASCADE;
  1366. DROP VIEW IF EXISTS outron CASCADE;
  1367. DROP VIEW IF EXISTS natural_plasmid CASCADE;
  1368. DROP VIEW IF EXISTS gene_trap_construct CASCADE;
  1369. DROP VIEW IF EXISTS promoter_trap_construct CASCADE;
  1370. DROP VIEW IF EXISTS enhancer_trap_construct CASCADE;
  1371. DROP VIEW IF EXISTS pac_end CASCADE;
  1372. DROP VIEW IF EXISTS rapd CASCADE;
  1373. DROP VIEW IF EXISTS shadow_enhancer CASCADE;
  1374. DROP VIEW IF EXISTS snv CASCADE;
  1375. DROP VIEW IF EXISTS x_element_combinatorial_repeat CASCADE;
  1376. DROP VIEW IF EXISTS y_prime_element CASCADE;
  1377. DROP VIEW IF EXISTS standard_draft CASCADE;
  1378. DROP VIEW IF EXISTS high_quality_draft CASCADE;
  1379. DROP VIEW IF EXISTS improved_high_quality_draft CASCADE;
  1380. DROP VIEW IF EXISTS annotation_directed_improved_draft CASCADE;
  1381. DROP VIEW IF EXISTS noncontiguous_finished CASCADE;
  1382. DROP VIEW IF EXISTS finished_genome CASCADE;
  1383. DROP VIEW IF EXISTS intronic_regulatory_region CASCADE;
  1384. DROP VIEW IF EXISTS centromere_dna_element_i CASCADE;
  1385. DROP VIEW IF EXISTS centromere_dna_element_ii CASCADE;
  1386. DROP VIEW IF EXISTS centromere_dna_element_iii CASCADE;
  1387. DROP VIEW IF EXISTS telomeric_repeat CASCADE;
  1388. DROP VIEW IF EXISTS x_element CASCADE;
  1389. DROP VIEW IF EXISTS yac_end CASCADE;
  1390. DROP VIEW IF EXISTS whole_genome_sequence_status CASCADE;
  1391. DROP VIEW IF EXISTS heritable_phenotypic_marker CASCADE;
  1392. DROP VIEW IF EXISTS peptide_collection CASCADE;
  1393. DROP VIEW IF EXISTS high_identity_region CASCADE;
  1394. DROP VIEW IF EXISTS processed_transcript CASCADE;
  1395. DROP VIEW IF EXISTS assortment_derived_variation CASCADE;
  1396. DROP VIEW IF EXISTS reference_genome CASCADE;
  1397. DROP VIEW IF EXISTS variant_genome CASCADE;
  1398. DROP VIEW IF EXISTS variant_collection CASCADE;
  1399. DROP VIEW IF EXISTS alteration_attribute CASCADE;
  1400. DROP VIEW IF EXISTS chromosomal_variation_attribute CASCADE;
  1401. DROP VIEW IF EXISTS intrachromosomal CASCADE;
  1402. DROP VIEW IF EXISTS interchromosomal CASCADE;
  1403. DROP VIEW IF EXISTS insertion_attribute CASCADE;
  1404. DROP VIEW IF EXISTS tandem CASCADE;
  1405. DROP VIEW IF EXISTS direct CASCADE;
  1406. DROP VIEW IF EXISTS inverted CASCADE;
  1407. DROP VIEW IF EXISTS free CASCADE;
  1408. DROP VIEW IF EXISTS inversion_attribute CASCADE;
  1409. DROP VIEW IF EXISTS pericentric CASCADE;
  1410. DROP VIEW IF EXISTS paracentric CASCADE;
  1411. DROP VIEW IF EXISTS translocaton_attribute CASCADE;
  1412. DROP VIEW IF EXISTS reciprocal CASCADE;
  1413. DROP VIEW IF EXISTS insertional CASCADE;
  1414. DROP VIEW IF EXISTS duplication_attribute CASCADE;
  1415. DROP VIEW IF EXISTS chromosomally_aberrant_genome CASCADE;
  1416. DROP VIEW IF EXISTS assembly_error_correction CASCADE;
  1417. DROP VIEW IF EXISTS base_call_error_correction CASCADE;
  1418. DROP VIEW IF EXISTS peptide_localization_signal CASCADE;
  1419. DROP VIEW IF EXISTS nuclear_localization_signal CASCADE;
  1420. DROP VIEW IF EXISTS endosomal_localization_signal CASCADE;
  1421. DROP VIEW IF EXISTS lysosomal_localization_signal CASCADE;
  1422. DROP VIEW IF EXISTS nuclear_export_signal CASCADE;
  1423. DROP VIEW IF EXISTS recombination_signal_sequence CASCADE;
  1424. DROP VIEW IF EXISTS cryptic_splice_site CASCADE;
  1425. DROP VIEW IF EXISTS nuclear_rim_localization_signal CASCADE;
  1426. DROP VIEW IF EXISTS p_element CASCADE;
  1427. DROP VIEW IF EXISTS functional_variant CASCADE;
  1428. DROP VIEW IF EXISTS structural_variant CASCADE;
  1429. DROP VIEW IF EXISTS transcript_function_variant CASCADE;
  1430. DROP VIEW IF EXISTS translational_product_function_variant CASCADE;
  1431. DROP VIEW IF EXISTS level_of_transcript_variant CASCADE;
  1432. DROP VIEW IF EXISTS decreased_transcript_level_variant CASCADE;
  1433. DROP VIEW IF EXISTS increased_transcript_level_variant CASCADE;
  1434. DROP VIEW IF EXISTS transcript_processing_variant CASCADE;
  1435. DROP VIEW IF EXISTS editing_variant CASCADE;
  1436. DROP VIEW IF EXISTS polyadenylation_variant CASCADE;
  1437. DROP VIEW IF EXISTS transcript_stability_variant CASCADE;
  1438. DROP VIEW IF EXISTS decreased_transcript_stability_variant CASCADE;
  1439. DROP VIEW IF EXISTS increased_transcript_stability_variant CASCADE;
  1440. DROP VIEW IF EXISTS transcription_variant CASCADE;
  1441. DROP VIEW IF EXISTS rate_of_transcription_variant CASCADE;
  1442. DROP VIEW IF EXISTS increased_transcription_rate_variant CASCADE;
  1443. DROP VIEW IF EXISTS decreased_transcription_rate_variant CASCADE;
  1444. DROP VIEW IF EXISTS translational_product_level_variant CASCADE;
  1445. DROP VIEW IF EXISTS polypeptide_function_variant CASCADE;
  1446. DROP VIEW IF EXISTS decreased_translational_product_level CASCADE;
  1447. DROP VIEW IF EXISTS increased_translational_product_level CASCADE;
  1448. DROP VIEW IF EXISTS polypeptide_gain_of_function_variant CASCADE;
  1449. DROP VIEW IF EXISTS polypeptide_localization_variant CASCADE;
  1450. DROP VIEW IF EXISTS polypeptide_loss_of_function_variant CASCADE;
  1451. DROP VIEW IF EXISTS inactive_ligand_binding_site CASCADE;
  1452. DROP VIEW IF EXISTS polypeptide_partial_loss_of_function CASCADE;
  1453. DROP VIEW IF EXISTS polypeptide_post_translational_processing_variant CASCADE;
  1454. DROP VIEW IF EXISTS copy_number_change CASCADE;
  1455. DROP VIEW IF EXISTS gene_variant CASCADE;
  1456. DROP VIEW IF EXISTS gene_fusion CASCADE;
  1457. DROP VIEW IF EXISTS regulatory_region_variant CASCADE;
  1458. DROP VIEW IF EXISTS stop_retained_variant CASCADE;
  1459. DROP VIEW IF EXISTS splicing_variant CASCADE;
  1460. DROP VIEW IF EXISTS cryptic_splice_site_variant CASCADE;
  1461. DROP VIEW IF EXISTS cryptic_splice_acceptor CASCADE;
  1462. DROP VIEW IF EXISTS cryptic_splice_donor CASCADE;
  1463. DROP VIEW IF EXISTS exon_loss CASCADE;
  1464. DROP VIEW IF EXISTS intron_gain CASCADE;
  1465. DROP VIEW IF EXISTS splice_acceptor_variant CASCADE;
  1466. DROP VIEW IF EXISTS splice_donor_variant CASCADE;
  1467. DROP VIEW IF EXISTS transcript_variant CASCADE;
  1468. DROP VIEW IF EXISTS complex_change_in_transcript CASCADE;
  1469. DROP VIEW IF EXISTS stop_lost CASCADE;
  1470. DROP VIEW IF EXISTS coding_sequence_variant CASCADE;
  1471. DROP VIEW IF EXISTS codon_variant CASCADE;
  1472. DROP VIEW IF EXISTS initiator_codon_change CASCADE;
  1473. DROP VIEW IF EXISTS non_synonymous_codon CASCADE;
  1474. DROP VIEW IF EXISTS conservative_missense_codon CASCADE;
  1475. DROP VIEW IF EXISTS non_conservative_missense_codon CASCADE;
  1476. DROP VIEW IF EXISTS stop_gained CASCADE;
  1477. DROP VIEW IF EXISTS synonymous_codon CASCADE;
  1478. DROP VIEW IF EXISTS frameshift_variant CASCADE;
  1479. DROP VIEW IF EXISTS terminator_codon_variant CASCADE;
  1480. DROP VIEW IF EXISTS frame_restoring_variant CASCADE;
  1481. DROP VIEW IF EXISTS minus_1_frameshift_variant CASCADE;
  1482. DROP VIEW IF EXISTS minus_2_frameshift_variant CASCADE;
  1483. DROP VIEW IF EXISTS plus_1_frameshift_variant CASCADE;
  1484. DROP VIEW IF EXISTS plus_2_frameshift_variant CASCADE;
  1485. DROP VIEW IF EXISTS transcript_secondary_structure_variant CASCADE;
  1486. DROP VIEW IF EXISTS compensatory_transcript_secondary_structure_variant CASCADE;
  1487. DROP VIEW IF EXISTS translational_product_structure_variant CASCADE;
  1488. DROP VIEW IF EXISTS threed_polypeptide_structure_variant CASCADE;
  1489. DROP VIEW IF EXISTS complex_3d_structural_variant CASCADE;
  1490. DROP VIEW IF EXISTS conformational_change_variant CASCADE;
  1491. DROP VIEW IF EXISTS complex_change_of_translational_product_variant CASCADE;
  1492. DROP VIEW IF EXISTS polypeptide_sequence_variant CASCADE;
  1493. DROP VIEW IF EXISTS amino_acid_deletion CASCADE;
  1494. DROP VIEW IF EXISTS amino_acid_insertion CASCADE;
  1495. DROP VIEW IF EXISTS amino_acid_substitution CASCADE;
  1496. DROP VIEW IF EXISTS conservative_amino_acid_substitution CASCADE;
  1497. DROP VIEW IF EXISTS non_conservative_amino_acid_substitution CASCADE;
  1498. DROP VIEW IF EXISTS elongated_polypeptide CASCADE;
  1499. DROP VIEW IF EXISTS elongated_polypeptide_c_terminal CASCADE;
  1500. DROP VIEW IF EXISTS elongated_polypeptide_n_terminal CASCADE;
  1501. DROP VIEW IF EXISTS elongated_in_frame_polypeptide_c_terminal CASCADE;
  1502. DROP VIEW IF EXISTS elongated_out_of_frame_polypeptide_c_terminal CASCADE;
  1503. DROP VIEW IF EXISTS elongated_in_frame_polypeptide_n_terminal_elongation CASCADE;
  1504. DROP VIEW IF EXISTS elongated_out_of_frame_polypeptide_n_terminal CASCADE;
  1505. DROP VIEW IF EXISTS polypeptide_fusion CASCADE;
  1506. DROP VIEW IF EXISTS polypeptide_truncation CASCADE;
  1507. DROP VIEW IF EXISTS inactive_catalytic_site CASCADE;
  1508. DROP VIEW IF EXISTS nc_transcript_variant CASCADE;
  1509. DROP VIEW IF EXISTS mature_mirna_variant CASCADE;
  1510. DROP VIEW IF EXISTS nmd_transcript_variant CASCADE;
  1511. DROP VIEW IF EXISTS utr_variant CASCADE;
  1512. DROP VIEW IF EXISTS five_prime_utr_variant CASCADE;
  1513. DROP VIEW IF EXISTS three_prime_utr_variant CASCADE;
  1514. DROP VIEW IF EXISTS terminal_codon_variant CASCADE;
  1515. DROP VIEW IF EXISTS incomplete_terminal_codon_variant CASCADE;
  1516. DROP VIEW IF EXISTS intron_variant CASCADE;
  1517. DROP VIEW IF EXISTS intergenic_variant CASCADE;
  1518. DROP VIEW IF EXISTS splice_site_variant CASCADE;
  1519. DROP VIEW IF EXISTS splice_region_variant CASCADE;
  1520. DROP VIEW IF EXISTS upstream_gene_variant CASCADE;
  1521. DROP VIEW IF EXISTS downstream_gene_variant CASCADE;
  1522. DROP VIEW IF EXISTS fivekb_downstream_variant CASCADE;
  1523. DROP VIEW IF EXISTS fivehundred_b_downstream_variant CASCADE;
  1524. DROP VIEW IF EXISTS fivekb_upstream_variant CASCADE;
  1525. DROP VIEW IF EXISTS twokb_upstream_variant CASCADE;
  1526. DROP VIEW IF EXISTS rrna_gene CASCADE;
  1527. DROP VIEW IF EXISTS pirna_gene CASCADE;
  1528. DROP VIEW IF EXISTS rnase_p_rna_gene CASCADE;
  1529. DROP VIEW IF EXISTS rnase_mrp_rna_gene CASCADE;
  1530. DROP VIEW IF EXISTS lincrna_gene CASCADE;
  1531. DROP VIEW IF EXISTS mathematically_defined_repeat CASCADE;
  1532. DROP VIEW IF EXISTS telomerase_rna_gene CASCADE;
  1533. DROP VIEW IF EXISTS targeting_vector CASCADE;
  1534. DROP VIEW IF EXISTS genetic_marker CASCADE;
  1535. DROP VIEW IF EXISTS dart_marker CASCADE;
  1536. DROP VIEW IF EXISTS kozak_sequence CASCADE;
  1537. DROP VIEW IF EXISTS nested_transposon CASCADE;
  1538. DROP VIEW IF EXISTS nested_repeat CASCADE;
  1539. DROP VIEW IF EXISTS inframe_variant CASCADE;
  1540. DROP VIEW IF EXISTS inframe_codon_gain CASCADE;
  1541. DROP VIEW IF EXISTS inframe_codon_loss CASCADE;
  1542. DROP VIEW IF EXISTS retinoic_acid_responsive_element CASCADE;
  1543. DROP VIEW IF EXISTS nucleotide_to_protein_binding_site CASCADE;
  1544. DROP VIEW IF EXISTS nucleotide_binding_site CASCADE;
  1545. DROP VIEW IF EXISTS metal_binding_site CASCADE;
  1546. DROP VIEW IF EXISTS ligand_binding_site CASCADE;
  1547. DROP VIEW IF EXISTS nested_tandem_repeat CASCADE;
  1548. DROP VIEW IF EXISTS promoter_element CASCADE;
  1549. DROP VIEW IF EXISTS core_promoter_element CASCADE;
  1550. DROP VIEW IF EXISTS rna_polymerase_ii_tata_box CASCADE;
  1551. DROP VIEW IF EXISTS rna_polymerase_iii_tata_box CASCADE;
  1552. DROP VIEW IF EXISTS bred_motif CASCADE;
  1553. DROP VIEW IF EXISTS dce CASCADE;
  1554. DROP VIEW IF EXISTS dce_si CASCADE;
  1555. DROP VIEW IF EXISTS dce_sii CASCADE;
  1556. DROP VIEW IF EXISTS dce_siii CASCADE;
  1557. DROP VIEW IF EXISTS proximal_promoter_element CASCADE;
  1558. DROP VIEW IF EXISTS rnapol_ii_core_promoter CASCADE;
  1559. DROP VIEW IF EXISTS distal_promoter_element CASCADE;
  1560. DROP VIEW IF EXISTS bacterial_rnapol_promoter_sigma_70 CASCADE;
  1561. DROP VIEW IF EXISTS bacterial_rnapol_promoter_sigma54 CASCADE;
  1562. DROP VIEW IF EXISTS minus_12_signal CASCADE;
  1563. DROP VIEW IF EXISTS minus_24_signal CASCADE;
  1564. DROP VIEW IF EXISTS a_box_type_1 CASCADE;
  1565. DROP VIEW IF EXISTS a_box_type_2 CASCADE;
  1566. DROP VIEW IF EXISTS intermediate_element CASCADE;
  1567. DROP VIEW IF EXISTS regulatory_promoter_element CASCADE;
  1568. DROP VIEW IF EXISTS transcription_regulatory_region CASCADE;
  1569. DROP VIEW IF EXISTS translation_regulatory_region CASCADE;
  1570. DROP VIEW IF EXISTS recombination_regulatory_region CASCADE;
  1571. DROP VIEW IF EXISTS replication_regulatory_region CASCADE;
  1572. DROP VIEW IF EXISTS sequence_motif CASCADE;
  1573. DROP VIEW IF EXISTS experimental_feature_attribute CASCADE;
  1574. DROP VIEW IF EXISTS score CASCADE;
  1575. DROP VIEW IF EXISTS quality_value CASCADE;
  1576. DROP VIEW IF EXISTS restriction_enzyme_recognition_site CASCADE;
  1577. DROP VIEW IF EXISTS restriction_enzyme_cleavage_junction CASCADE;
  1578. DROP VIEW IF EXISTS five_prime_restriction_enzyme_junction CASCADE;
  1579. DROP VIEW IF EXISTS three_prime_restriction_enzyme_junction CASCADE;
  1580. DROP VIEW IF EXISTS blunt_end_restriction_enzyme_cleavage_site CASCADE;
  1581. DROP VIEW IF EXISTS sticky_end_restriction_enzyme_cleavage_site CASCADE;
  1582. DROP VIEW IF EXISTS blunt_end_restriction_enzyme_cleavage_junction CASCADE;
  1583. DROP VIEW IF EXISTS single_strand_restriction_enzyme_cleavage_site CASCADE;
  1584. DROP VIEW IF EXISTS restriction_enzyme_single_strand_overhang CASCADE;
  1585. DROP VIEW IF EXISTS experimentally_defined_binding_region CASCADE;
  1586. DROP VIEW IF EXISTS chip_seq_region CASCADE;
  1587. DROP VIEW IF EXISTS aspe_primer CASCADE;
  1588. DROP VIEW IF EXISTS dcaps_primer CASCADE;
  1589. DROP VIEW IF EXISTS histone_modification CASCADE;
  1590. DROP VIEW IF EXISTS histone_methylation_site CASCADE;
  1591. DROP VIEW IF EXISTS histone_acetylation_site CASCADE;
  1592. DROP VIEW IF EXISTS h3k9_acetylation_site CASCADE;
  1593. DROP VIEW IF EXISTS h3k14_acetylation_site CASCADE;
  1594. DROP VIEW IF EXISTS h3k4_monomethylation_site CASCADE;
  1595. DROP VIEW IF EXISTS h3k4_trimethylation CASCADE;
  1596. DROP VIEW IF EXISTS h3k9_trimethylation_site CASCADE;
  1597. DROP VIEW IF EXISTS h3k27_monomethylation_site CASCADE;
  1598. DROP VIEW IF EXISTS h3k27_trimethylation_site CASCADE;
  1599. DROP VIEW IF EXISTS h3k79_monomethylation_site CASCADE;
  1600. DROP VIEW IF EXISTS h3k79_dimethylation_site CASCADE;
  1601. DROP VIEW IF EXISTS h3k79_trimethylation_site CASCADE;
  1602. DROP VIEW IF EXISTS h4k20_monomethylation_site CASCADE;
  1603. DROP VIEW IF EXISTS h2bk5_monomethylation_site CASCADE;
  1604. DROP VIEW IF EXISTS isre CASCADE;
  1605. DROP VIEW IF EXISTS histone_ubiqitination_site CASCADE;
  1606. DROP VIEW IF EXISTS h2b_ubiquitination_site CASCADE;
  1607. DROP VIEW IF EXISTS h3k18_acetylation_site CASCADE;
  1608. DROP VIEW IF EXISTS h3k23_acylation_site CASCADE;
  1609. DROP VIEW IF EXISTS epigenetically_modified_region CASCADE;
  1610. DROP VIEW IF EXISTS h3k27_acylation_site CASCADE;
  1611. DROP VIEW IF EXISTS h3k36_monomethylation_site CASCADE;
  1612. DROP VIEW IF EXISTS h3k36_dimethylation_site CASCADE;
  1613. DROP VIEW IF EXISTS h3k36_trimethylation_site CASCADE;
  1614. DROP VIEW IF EXISTS h3k4_dimethylation_site CASCADE;
  1615. DROP VIEW IF EXISTS h3k27_dimethylation_site CASCADE;
  1616. DROP VIEW IF EXISTS h3k9_monomethylation_site CASCADE;
  1617. DROP VIEW IF EXISTS h3k9_dimethylation_site CASCADE;
  1618. DROP VIEW IF EXISTS h4k16_acylation_site CASCADE;
  1619. DROP VIEW IF EXISTS h4k5_acylation_site CASCADE;
  1620. DROP VIEW IF EXISTS h4k8_acylation_site CASCADE;
  1621. DROP VIEW IF EXISTS h3k27_methylation_site CASCADE;
  1622. DROP VIEW IF EXISTS h3k36_methylation_site CASCADE;
  1623. DROP VIEW IF EXISTS h3k4_methylation_site CASCADE;
  1624. DROP VIEW IF EXISTS h3k79_methylation_site CASCADE;
  1625. DROP VIEW IF EXISTS h3k9_methylation_site CASCADE;
  1626. DROP VIEW IF EXISTS histone_acylation_region CASCADE;
  1627. DROP VIEW IF EXISTS h4k_acylation_region CASCADE;
  1628. DROP VIEW IF EXISTS gene_with_non_canonical_start_codon CASCADE;
  1629. DROP VIEW IF EXISTS gene_with_start_codon_cug CASCADE;
  1630. DROP VIEW IF EXISTS pseudogenic_gene_segment CASCADE;
  1631. DROP VIEW IF EXISTS copy_number_gain CASCADE;
  1632. DROP VIEW IF EXISTS copy_number_loss CASCADE;
  1633. DROP VIEW IF EXISTS upd CASCADE;
  1634. DROP VIEW IF EXISTS maternal_uniparental_disomy CASCADE;
  1635. DROP VIEW IF EXISTS paternal_uniparental_disomy CASCADE;
  1636. DROP VIEW IF EXISTS open_chromatin_region CASCADE;
  1637. DROP VIEW IF EXISTS sl3_acceptor_site CASCADE;
  1638. DROP VIEW IF EXISTS sl4_acceptor_site CASCADE;
  1639. DROP VIEW IF EXISTS sl5_acceptor_site CASCADE;
  1640. DROP VIEW IF EXISTS sl6_acceptor_site CASCADE;
  1641. DROP VIEW IF EXISTS sl7_acceptor_site CASCADE;
  1642. DROP VIEW IF EXISTS sl8_acceptor_site CASCADE;
  1643. DROP VIEW IF EXISTS sl9_acceptor_site CASCADE;
  1644. DROP VIEW IF EXISTS sl10_accceptor_site CASCADE;
  1645. DROP VIEW IF EXISTS sl11_acceptor_site CASCADE;
  1646. DROP VIEW IF EXISTS sl12_acceptor_site CASCADE;
  1647. DROP VIEW IF EXISTS duplicated_pseudogene CASCADE;
  1648. DROP VIEW IF EXISTS unitary_pseudogene CASCADE;
  1649. DROP VIEW IF EXISTS non_processed_pseudogene CASCADE;
  1650. DROP VIEW IF EXISTS variant_quality CASCADE;
  1651. DROP VIEW IF EXISTS variant_origin CASCADE;
  1652. DROP VIEW IF EXISTS variant_frequency CASCADE;
  1653. DROP VIEW IF EXISTS unique_variant CASCADE;
  1654. DROP VIEW IF EXISTS rare_variant CASCADE;
  1655. DROP VIEW IF EXISTS polymorphic_variant CASCADE;
  1656. DROP VIEW IF EXISTS common_variant CASCADE;
  1657. DROP VIEW IF EXISTS fixed_variant CASCADE;
  1658. DROP VIEW IF EXISTS variant_phenotype CASCADE;
  1659. DROP VIEW IF EXISTS benign_variant CASCADE;
  1660. DROP VIEW IF EXISTS disease_associated_variant CASCADE;
  1661. DROP VIEW IF EXISTS disease_causing_variant CASCADE;
  1662. DROP VIEW IF EXISTS lethal_variant CASCADE;
  1663. DROP VIEW IF EXISTS quantitative_variant CASCADE;
  1664. DROP VIEW IF EXISTS maternal_variant CASCADE;
  1665. DROP VIEW IF EXISTS paternal_variant CASCADE;
  1666. DROP VIEW IF EXISTS somatic_variant CASCADE;
  1667. DROP VIEW IF EXISTS germline_variant CASCADE;
  1668. DROP VIEW IF EXISTS pedigree_specific_variant CASCADE;
  1669. DROP VIEW IF EXISTS population_specific_variant CASCADE;
  1670. DROP VIEW IF EXISTS de_novo_variant CASCADE;
  1671. DROP VIEW IF EXISTS tf_binding_site_variant CASCADE;
  1672. DROP VIEW IF EXISTS missense_codon CASCADE;
  1673. DROP VIEW IF EXISTS complex_structural_alteration CASCADE;
  1674. DROP VIEW IF EXISTS structural_alteration CASCADE;
  1675. DROP VIEW IF EXISTS loss_of_heterozygosity CASCADE;
  1676. DROP VIEW IF EXISTS splice_donor_5th_base_variant CASCADE;
  1677. DROP VIEW IF EXISTS u_box CASCADE;
  1678. DROP VIEW IF EXISTS mating_type_region CASCADE;
  1679. DROP VIEW IF EXISTS paired_end_fragment CASCADE;
  1680. DROP VIEW IF EXISTS exon_variant CASCADE;
  1681. DROP VIEW IF EXISTS non_coding_exon_variant CASCADE;
  1682. DROP VIEW IF EXISTS clone_end CASCADE;
  1683. DROP VIEW IF EXISTS point_centromere CASCADE;
  1684. DROP VIEW IF EXISTS regional_centromere CASCADE;
  1685. DROP VIEW IF EXISTS regional_centromere_central_core CASCADE;
  1686. DROP VIEW IF EXISTS centromeric_repeat CASCADE;
  1687. DROP VIEW IF EXISTS regional_centromere_inner_repeat_region CASCADE;
  1688. DROP VIEW IF EXISTS regional_centromere_outer_repeat_region CASCADE;
  1689. DROP VIEW IF EXISTS tasirna CASCADE;
  1690. DROP VIEW IF EXISTS tasirna_primary_transcript CASCADE;
  1691. DROP VIEW IF EXISTS increased_polyadenylation_variant CASCADE;
  1692. DROP VIEW IF EXISTS decreased_polyadenylation_variant CASCADE;
  1693. DROP VIEW IF EXISTS regulatory_region CASCADE;
  1694. DROP VIEW IF EXISTS u14_snorna_primary_transcript CASCADE;
  1695. DROP VIEW IF EXISTS methylation_guide_snorna CASCADE;
  1696. DROP VIEW IF EXISTS rrna_cleavage_rna CASCADE;
  1697. DROP VIEW IF EXISTS exon_of_single_exon_gene CASCADE;
  1698. DROP VIEW IF EXISTS cassette_array_member CASCADE;
  1699. DROP VIEW IF EXISTS gene_cassette_member CASCADE;
  1700. DROP VIEW IF EXISTS gene_subarray_member CASCADE;
  1701. DROP VIEW IF EXISTS primer_binding_site CASCADE;
  1702. DROP VIEW IF EXISTS gene_array CASCADE;
  1703. DROP VIEW IF EXISTS gene_subarray CASCADE;
  1704. DROP VIEW IF EXISTS gene_cassette CASCADE;
  1705. DROP VIEW IF EXISTS gene_cassette_array CASCADE;
  1706. DROP VIEW IF EXISTS gene_group CASCADE;
  1707. DROP VIEW IF EXISTS selenocysteine_trna_primary_transcript CASCADE;
  1708. DROP VIEW IF EXISTS selenocysteinyl_trna CASCADE;
  1709. DROP VIEW IF EXISTS syntenic_region CASCADE;
  1710. DROP VIEW IF EXISTS biochemical_region_of_peptide CASCADE;
  1711. DROP VIEW IF EXISTS molecular_contact_region CASCADE;
  1712. DROP VIEW IF EXISTS intrinsically_unstructured_polypeptide_region CASCADE;
  1713. DROP VIEW IF EXISTS catmat_left_handed_three CASCADE;
  1714. DROP VIEW IF EXISTS catmat_left_handed_four CASCADE;
  1715. DROP VIEW IF EXISTS catmat_right_handed_three CASCADE;
  1716. DROP VIEW IF EXISTS catmat_right_handed_four CASCADE;
  1717. DROP VIEW IF EXISTS alpha_beta_motif CASCADE;
  1718. DROP VIEW IF EXISTS lipoprotein_signal_peptide CASCADE;
  1719. DROP VIEW IF EXISTS no_output CASCADE;
  1720. DROP VIEW IF EXISTS cleaved_peptide_region CASCADE;
  1721. DROP VIEW IF EXISTS peptide_coil CASCADE;
  1722. DROP VIEW IF EXISTS hydrophobic_region_of_peptide CASCADE;
  1723. DROP VIEW IF EXISTS n_terminal_region CASCADE;
  1724. DROP VIEW IF EXISTS c_terminal_region CASCADE;
  1725. DROP VIEW IF EXISTS central_hydrophobic_region_of_signal_peptide CASCADE;
  1726. DROP VIEW IF EXISTS polypeptide_conserved_motif CASCADE;
  1727. DROP VIEW IF EXISTS polypeptide_binding_motif CASCADE;
  1728. DROP VIEW IF EXISTS polypeptide_catalytic_motif CASCADE;
  1729. DROP VIEW IF EXISTS polypeptide_dna_contact CASCADE;
  1730. DROP VIEW IF EXISTS polypeptide_conserved_region CASCADE;
  1731. DROP VIEW IF EXISTS substitution CASCADE;
  1732. DROP VIEW IF EXISTS complex_substitution CASCADE;
  1733. DROP VIEW IF EXISTS point_mutation CASCADE;
  1734. DROP VIEW IF EXISTS transition CASCADE;
  1735. DROP VIEW IF EXISTS pyrimidine_transition CASCADE;
  1736. DROP VIEW IF EXISTS c_to_t_transition CASCADE;
  1737. DROP VIEW IF EXISTS c_to_t_transition_at_pcpg_site CASCADE;
  1738. DROP VIEW IF EXISTS t_to_c_transition CASCADE;
  1739. DROP VIEW IF EXISTS purine_transition CASCADE;
  1740. DROP VIEW IF EXISTS a_to_g_transition CASCADE;
  1741. DROP VIEW IF EXISTS g_to_a_transition CASCADE;
  1742. DROP VIEW IF EXISTS transversion CASCADE;
  1743. DROP VIEW IF EXISTS pyrimidine_to_purine_transversion CASCADE;
  1744. DROP VIEW IF EXISTS c_to_a_transversion CASCADE;
  1745. DROP VIEW IF EXISTS c_to_g_transversion CASCADE;
  1746. DROP VIEW IF EXISTS t_to_a_transversion CASCADE;
  1747. DROP VIEW IF EXISTS t_to_g_transversion CASCADE;
  1748. DROP VIEW IF EXISTS purine_to_pyrimidine_transversion CASCADE;
  1749. DROP VIEW IF EXISTS a_to_c_transversion CASCADE;
  1750. DROP VIEW IF EXISTS a_to_t_transversion CASCADE;
  1751. DROP VIEW IF EXISTS g_to_c_transversion CASCADE;
  1752. DROP VIEW IF EXISTS g_to_t_transversion CASCADE;
  1753. DROP VIEW IF EXISTS intrachromosomal_mutation CASCADE;
  1754. DROP VIEW IF EXISTS chromosomal_deletion CASCADE;
  1755. DROP VIEW IF EXISTS chromosomal_inversion CASCADE;
  1756. DROP VIEW IF EXISTS interchromosomal_mutation CASCADE;
  1757. DROP VIEW IF EXISTS indel CASCADE;
  1758. DROP VIEW IF EXISTS duplication CASCADE;
  1759. DROP VIEW IF EXISTS inversion CASCADE;
  1760. DROP VIEW IF EXISTS chromosomal_duplication CASCADE;
  1761. DROP VIEW IF EXISTS intrachromosomal_duplication CASCADE;
  1762. DROP VIEW IF EXISTS direct_tandem_duplication CASCADE;
  1763. DROP VIEW IF EXISTS inverted_tandem_duplication CASCADE;
  1764. DROP VIEW IF EXISTS intrachromosomal_transposition CASCADE;
  1765. DROP VIEW IF EXISTS compound_chromosome CASCADE;
  1766. DROP VIEW IF EXISTS robertsonian_fusion CASCADE;
  1767. DROP VIEW IF EXISTS chromosomal_translocation CASCADE;
  1768. DROP VIEW IF EXISTS ring_chromosome CASCADE;
  1769. DROP VIEW IF EXISTS pericentric_inversion CASCADE;
  1770. DROP VIEW IF EXISTS paracentric_inversion CASCADE;
  1771. DROP VIEW IF EXISTS reciprocal_chromosomal_translocation CASCADE;
  1772. DROP VIEW IF EXISTS autosynaptic_chromosome CASCADE;
  1773. DROP VIEW IF EXISTS homo_compound_chromosome CASCADE;
  1774. DROP VIEW IF EXISTS hetero_compound_chromosome CASCADE;
  1775. DROP VIEW IF EXISTS chromosome_fission CASCADE;
  1776. DROP VIEW IF EXISTS dexstrosynaptic_chromosome CASCADE;
  1777. DROP VIEW IF EXISTS laevosynaptic_chromosome CASCADE;
  1778. DROP VIEW IF EXISTS free_duplication CASCADE;
  1779. DROP VIEW IF EXISTS free_ring_duplication CASCADE;
  1780. DROP VIEW IF EXISTS complex_chromosomal_mutation CASCADE;
  1781. DROP VIEW IF EXISTS deficient_translocation CASCADE;
  1782. DROP VIEW IF EXISTS inversion_cum_translocation CASCADE;
  1783. DROP VIEW IF EXISTS bipartite_duplication CASCADE;
  1784. DROP VIEW IF EXISTS cyclic_translocation CASCADE;
  1785. DROP VIEW IF EXISTS bipartite_inversion CASCADE;
  1786. DROP VIEW IF EXISTS uninvert_insert_dup CASCADE;
  1787. DROP VIEW IF EXISTS inverted_insertional_duplication CASCADE;
  1788. DROP VIEW IF EXISTS insertional_duplication CASCADE;
  1789. DROP VIEW IF EXISTS interchromosomal_transposition CASCADE;
  1790. DROP VIEW IF EXISTS invert_inter_transposition CASCADE;
  1791. DROP VIEW IF EXISTS uninvert_inter_transposition CASCADE;
  1792. DROP VIEW IF EXISTS invert_intra_transposition CASCADE;
  1793. DROP VIEW IF EXISTS uninvert_intra_transposition CASCADE;
  1794. DROP VIEW IF EXISTS unorient_insert_dup CASCADE;
  1795. DROP VIEW IF EXISTS unoriented_interchromosomal_transposition CASCADE;
  1796. DROP VIEW IF EXISTS unoriented_intrachromosomal_transposition CASCADE;
  1797. DROP VIEW IF EXISTS uncharacterised_chromosomal_mutation CASCADE;
  1798. DROP VIEW IF EXISTS deficient_inversion CASCADE;
  1799. DROP VIEW IF EXISTS tandem_duplication CASCADE;
  1800. DROP VIEW IF EXISTS partially_characterised_chromosomal_mutation CASCADE;
  1801. DROP VIEW IF EXISTS chromosome_number_variation CASCADE;
  1802. DROP VIEW IF EXISTS chromosome_structure_variation CASCADE;
  1803. DROP VIEW IF EXISTS alternatively_spliced_transcript CASCADE;
  1804. DROP VIEW IF EXISTS encodes_1_polypeptide CASCADE;
  1805. DROP VIEW IF EXISTS encodes_greater_than_1_polypeptide CASCADE;
  1806. DROP VIEW IF EXISTS encodes_different_polypeptides_different_stop CASCADE;
  1807. DROP VIEW IF EXISTS encodes_overlapping_peptides_different_start CASCADE;
  1808. DROP VIEW IF EXISTS encodes_disjoint_polypeptides CASCADE;
  1809. DROP VIEW IF EXISTS encodes_overlapping_polypeptides_different_start_and_stop CASCADE;
  1810. DROP VIEW IF EXISTS encodes_overlapping_peptides CASCADE;
  1811. DROP VIEW IF EXISTS cryptogene CASCADE;
  1812. DROP VIEW IF EXISTS dicistronic_primary_transcript CASCADE;
  1813. DROP VIEW IF EXISTS member_of_regulon CASCADE;
  1814. DROP VIEW IF EXISTS cds_independently_known CASCADE;
  1815. DROP VIEW IF EXISTS orphan_cds CASCADE;
  1816. DROP VIEW IF EXISTS cds_supported_by_domain_match_data CASCADE;
  1817. DROP VIEW IF EXISTS cds_supported_by_sequence_similarity_data CASCADE;
  1818. DROP VIEW IF EXISTS cds_predicted CASCADE;
  1819. DROP VIEW IF EXISTS cds_supported_by_est_or_cdna_data CASCADE;
  1820. DROP VIEW IF EXISTS internal_shine_dalgarno_sequence CASCADE;
  1821. DROP VIEW IF EXISTS recoded_mrna CASCADE;
  1822. DROP VIEW IF EXISTS minus_1_translationally_frameshifted CASCADE;
  1823. DROP VIEW IF EXISTS plus_1_translationally_frameshifted CASCADE;
  1824. DROP VIEW IF EXISTS mrna_recoded_by_translational_bypass CASCADE;
  1825. DROP VIEW IF EXISTS mrna_recoded_by_codon_redefinition CASCADE;
  1826. DROP VIEW IF EXISTS recoding_stimulatory_region CASCADE;
  1827. DROP VIEW IF EXISTS four_bp_start_codon CASCADE;
  1828. DROP VIEW IF EXISTS archaeal_intron CASCADE;
  1829. DROP VIEW IF EXISTS trna_intron CASCADE;
  1830. DROP VIEW IF EXISTS ctg_start_codon CASCADE;
  1831. DROP VIEW IF EXISTS secis_element CASCADE;
  1832. DROP VIEW IF EXISTS retron CASCADE;
  1833. DROP VIEW IF EXISTS three_prime_recoding_site CASCADE;
  1834. DROP VIEW IF EXISTS three_prime_stem_loop_structure CASCADE;
  1835. DROP VIEW IF EXISTS five_prime_recoding_site CASCADE;
  1836. DROP VIEW IF EXISTS flanking_three_prime_quadruplet_recoding_signal CASCADE;
  1837. DROP VIEW IF EXISTS uag_stop_codon_signal CASCADE;
  1838. DROP VIEW IF EXISTS uaa_stop_codon_signal CASCADE;
  1839. DROP VIEW IF EXISTS regulon CASCADE;
  1840. DROP VIEW IF EXISTS uga_stop_codon_signal CASCADE;
  1841. DROP VIEW IF EXISTS three_prime_repeat_recoding_signal CASCADE;
  1842. DROP VIEW IF EXISTS distant_three_prime_recoding_signal CASCADE;
  1843. DROP VIEW IF EXISTS stop_codon_signal CASCADE;
  1844. DROP VIEW IF EXISTS databank_entry CASCADE;
  1845. DROP VIEW IF EXISTS gene_segment CASCADE;
  1846. DROP VIEW IF EXISTS protein_coding_gene CASCADE;
  1847. DROP VIEW IF EXISTS intronloc_view CASCADE;
  1848. DROP VIEW IF EXISTS intron_combined_view CASCADE;
  1849. DROP VIEW IF EXISTS gffatts CASCADE;
  1850. DROP VIEW IF EXISTS gff3atts CASCADE;
  1851. DROP VIEW IF EXISTS gff3view CASCADE;
  1852. DROP VIEW IF EXISTS all_feature_names CASCADE;
  1853. DROP VIEW IF EXISTS f_loc CASCADE;
  1854. DROP VIEW IF EXISTS dfeatureloc CASCADE;
  1855. DROP VIEW IF EXISTS f_type CASCADE;
  1856. DROP VIEW IF EXISTS fnr_type CASCADE;
  1857. DROP VIEW IF EXISTS fp_key CASCADE;
  1858. DROP VIEW IF EXISTS featureset_meets CASCADE;
  1859. DROP VIEW IF EXISTS feature_meets CASCADE;
  1860. DROP VIEW IF EXISTS feature_meets_on_same_strand CASCADE;
  1861. DROP VIEW IF EXISTS feature_disjoint CASCADE;
  1862. DROP VIEW IF EXISTS feature_union CASCADE;
  1863. DROP VIEW IF EXISTS feature_intersection CASCADE;
  1864. DROP VIEW IF EXISTS feature_difference CASCADE;
  1865. DROP VIEW IF EXISTS feature_distance CASCADE;
  1866. DROP VIEW IF EXISTS feature_contains CASCADE;
  1867. --
  1868. -- Name: feature_by_fx_type; Type: TYPE; Schema: public; Owner: chado
  1869. --
  1870. ALTER TYPE feature_by_fx_type ALTER ATTRIBUTE feature_id SET DATA TYPE bigint;
  1871. --
  1872. -- Name: soi_type; Type: TYPE; Schema: public; Owner: chado
  1873. --
  1874. ALTER TYPE soi_type
  1875. ALTER ATTRIBUTE type_id TYPE bigint,
  1876. ALTER ATTRIBUTE subject_id TYPE bigint,
  1877. ALTER ATTRIBUTE object_id TYPE bigint;
  1878. --
  1879. -- Name: create_point(bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
  1880. --
  1881. DROP FUNCTION IF EXISTS create_point(integer, integer);
  1882. CREATE OR REPLACE FUNCTION create_point(bigint, bigint) RETURNS point
  1883. LANGUAGE sql
  1884. AS $_$SELECT point ($1, $2)$_$;
  1885. --
  1886. -- Name: boxrange(bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
  1887. --
  1888. DROP INDEX bingroup_boxrange;
  1889. DROP INDEX binloc_boxrange;
  1890. DROP FUNCTION IF EXISTS boxrange(integer, integer);
  1891. CREATE OR REPLACE FUNCTION boxrange(bigint, bigint) RETURNS box
  1892. LANGUAGE sql IMMUTABLE
  1893. AS $_$SELECT box (create_point(CAST(0 AS bigint), $1), create_point($2,500000000))$_$;
  1894. --
  1895. -- Name: boxrange(bigint, bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
  1896. --
  1897. DROP INDEX binloc_boxrange_src;
  1898. DROP FUNCTION IF EXISTS boxrange(integer, integer, integer);
  1899. CREATE OR REPLACE FUNCTION boxrange(bigint, bigint, bigint) RETURNS box
  1900. LANGUAGE sql IMMUTABLE
  1901. AS $_$SELECT box (create_point($1, $2), create_point($1,$3))$_$;
  1902. SET search_path=frange,public,pg_catalog;
  1903. --
  1904. -- Name: featuregroup; Type: TABLE; Schema: frange; Owner: chado; Tablespace:
  1905. --
  1906. ALTER TABLE featuregroup
  1907. ALTER featuregroup_id TYPE bigint,
  1908. ALTER subject_id TYPE bigint,
  1909. ALTER object_id TYPE bigint,
  1910. ALTER group_id TYPE bigint,
  1911. ALTER srcfeature_id TYPE bigint,
  1912. ALTER fmin TYPE bigint,
  1913. ALTER fmax TYPE bigint;
  1914. CREATE INDEX bingroup_boxrange ON featuregroup USING RTREE (boxrange(fmin, fmax)) WHERE is_root = 1;
  1915. --
  1916. -- Name: _fill_featuregroup(bigint, bigint); Type: FUNCTION; Schema: frange; Owner: chado
  1917. --
  1918. DROP FUNCTION IF EXISTS _fill_featuregroup(integer, integer);
  1919. CREATE OR REPLACE FUNCTION _fill_featuregroup(bigint, bigint) RETURNS integer
  1920. LANGUAGE plpgsql
  1921. AS $_$
  1922. DECLARE
  1923. groupid alias for $1;
  1924. parentid alias for $2;
  1925. g featuregroup%ROWTYPE;
  1926. BEGIN
  1927. FOR g IN
  1928. SELECT DISTINCT 0, fr.subject_id, fr.object_id, groupid, fl.srcfeature_id, fl.fmin, fl.fmax, fl.strand, 0
  1929. FROM feature_relationship AS fr,
  1930. featureloc AS fl
  1931. WHERE fr.object_id = parentid
  1932. AND fr.subject_id = fl.feature_id
  1933. LOOP
  1934. INSERT INTO featuregroup
  1935. (subject_id, object_id, group_id, srcfeature_id, fmin, fmax, strand, is_root)
  1936. VALUES
  1937. (g.subject_id, g.object_id, g.group_id, g.srcfeature_id, g.fmin, g.fmax, g.strand, 0);
  1938. PERFORM _fill_featuregroup(groupid,g.subject_id);
  1939. END LOOP;
  1940. RETURN 1;
  1941. END;
  1942. $_$;
  1943. --
  1944. -- Name: fill_featuregroup(); Type: FUNCTION; Schema: frange; Owner: chado
  1945. --
  1946. DROP FUNCTION IF EXISTS fill_featuregroup();
  1947. CREATE OR REPLACE FUNCTION fill_featuregroup() RETURNS integer
  1948. LANGUAGE plpgsql
  1949. AS $$
  1950. DECLARE
  1951. p featuregroup%ROWTYPE;
  1952. l featureloc%ROWTYPE;
  1953. isa bigint;
  1954. -- c int; the c variable isnt used
  1955. BEGIN
  1956. TRUNCATE featuregroup;
  1957. SELECT INTO isa cvterm_id FROM cvterm WHERE (name = 'isa' OR name = 'is_a');
  1958. -- Recursion is the biggest performance killer for this function.
  1959. -- We can dodge the first round of recursion using the "fr1 / GROUP BY" approach.
  1960. -- Luckily, most feature graphs are only 2 levels deep, so most recursion is
  1961. -- avoidable.
  1962. RAISE NOTICE 'Loading root and singleton features.';
  1963. FOR p IN
  1964. SELECT DISTINCT 0, f.feature_id, f.feature_id, f.feature_id, srcfeature_id, fmin, fmax, strand, 1
  1965. FROM feature AS f
  1966. LEFT JOIN feature_relationship ON (f.feature_id = object_id)
  1967. LEFT JOIN featureloc ON (f.feature_id = featureloc.feature_id)
  1968. WHERE f.feature_id NOT IN ( SELECT subject_id FROM feature_relationship )
  1969. AND srcfeature_id IS NOT NULL
  1970. LOOP
  1971. INSERT INTO featuregroup
  1972. (subject_id, object_id, group_id, srcfeature_id, fmin, fmax, strand, is_root)
  1973. VALUES
  1974. (p.object_id, p.object_id, p.object_id, p.srcfeature_id, p.fmin, p.fmax, p.strand, 1);
  1975. END LOOP;
  1976. RAISE NOTICE 'Loading child features. If your database contains grandchild';
  1977. RAISE NOTICE 'features, they will be loaded recursively and may take a long time.';
  1978. FOR p IN
  1979. SELECT DISTINCT 0, fr0.subject_id, fr0.object_id, fr0.object_id, fl.srcfeature_id, fl.fmin, fl.fmax, fl.strand, count(fr1.subject_id)
  1980. FROM feature_relationship AS fr0
  1981. LEFT JOIN feature_relationship AS fr1 ON ( fr0.subject_id = fr1.object_id),
  1982. featureloc AS fl
  1983. WHERE fr0.subject_id = fl.feature_id
  1984. AND fr0.object_id IN (
  1985. SELECT f.feature_id
  1986. FROM feature AS f
  1987. LEFT JOIN feature_relationship ON (f.feature_id = object_id)
  1988. LEFT JOIN featureloc ON (f.feature_id = featureloc.feature_id)
  1989. WHERE f.feature_id NOT IN ( SELECT subject_id FROM feature_relationship )
  1990. AND f.feature_id IN ( SELECT object_id FROM feature_relationship )
  1991. AND srcfeature_id IS NOT NULL
  1992. )
  1993. GROUP BY fr0.subject_id, fr0.object_id, fl.srcfeature_id, fl.fmin, fl.fmax, fl.strand
  1994. LOOP
  1995. INSERT INTO featuregroup
  1996. (subject_id, object_id, group_id, srcfeature_id, fmin, fmax, strand, is_root)
  1997. VALUES
  1998. (p.subject_id, p.object_id, p.object_id, p.srcfeature_id, p.fmin, p.fmax, p.strand, 0);
  1999. IF ( p.is_root > 0 ) THEN
  2000. PERFORM _fill_featuregroup(p.subject_id,p.subject_id);
  2001. END IF;
  2002. END LOOP;
  2003. RETURN 1;
  2004. END;
  2005. $$;
  2006. SET search_path=public,frange,pg_catalog;
  2007. --
  2008. -- Name: boxquery(bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
  2009. --
  2010. DROP FUNCTION IF EXISTS boxquery(integer, integer);
  2011. CREATE OR REPLACE FUNCTION boxquery(bigint, bigint) RETURNS box
  2012. LANGUAGE sql IMMUTABLE
  2013. AS $_$SELECT box (create_point($1, $2), create_point($1, $2))$_$;
  2014. --
  2015. -- Name: boxquery(bigint, bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
  2016. --
  2017. DROP FUNCTION IF EXISTS boxquery(integer, integer, integer);
  2018. CREATE OR REPLACE FUNCTION boxquery(bigint, bigint, bigint) RETURNS box
  2019. LANGUAGE sql IMMUTABLE
  2020. AS $_$SELECT box (create_point($1, $2), create_point($1, $3))$_$;
  2021. SET search_path=frange,public,pg_catalog;
  2022. --
  2023. -- Name: groupoverlaps(bigint, bigint); Type: FUNCTION; Schema: frange; Owner: chado
  2024. --
  2025. DROP FUNCTION IF EXISTS groupoverlaps(integer, integer);
  2026. CREATE OR REPLACE FUNCTION groupoverlaps(bigint, bigint) RETURNS SETOF featuregroup
  2027. LANGUAGE sql
  2028. AS $_$
  2029. SELECT *
  2030. FROM featuregroup
  2031. WHERE is_root = 1
  2032. AND boxquery($1, $2) @ boxrange(fmin,fmax)
  2033. $_$;
  2034. --
  2035. -- Name: groupoverlaps(bigint[], bigint[], character varying[]); Type: FUNCTION; Schema: frange; Owner: chado
  2036. --
  2037. DROP FUNCTION IF EXISTS groupoverlaps(integer[], integer[], character varying[]);
  2038. CREATE OR REPLACE FUNCTION groupoverlaps(bigint[], bigint[], character varying[]) RETURNS SETOF featuregroup
  2039. LANGUAGE plpgsql
  2040. AS $_$
  2041. DECLARE
  2042. mins alias for $1;
  2043. maxs alias for $2;
  2044. srcs alias for $3;
  2045. f featuregroup%ROWTYPE;
  2046. i int;
  2047. s int;
  2048. BEGIN
  2049. i := 1;
  2050. FOR i in array_lower( mins, 1 ) .. array_upper( mins, 1 ) LOOP
  2051. SELECT INTO s feature_id FROM feature WHERE uniquename = srcs[i];
  2052. FOR f IN
  2053. SELECT *
  2054. FROM featuregroup WHERE group_id IN (
  2055. SELECT group_id FROM featuregroup
  2056. WHERE (srcfeature_id = s OR srcfeature_id IS NULL)
  2057. AND group_id IN (
  2058. SELECT group_id FROM groupoverlaps( mins[i], maxs[i] )
  2059. WHERE srcfeature_id = s
  2060. )
  2061. )
  2062. LOOP
  2063. RETURN NEXT f;
  2064. END LOOP;
  2065. END LOOP;
  2066. RETURN;
  2067. END;
  2068. $_$;
  2069. --
  2070. -- Name: groupoverlaps(bigint, bigint, character varying); Type: FUNCTION; Schema: frange; Owner: chado
  2071. --
  2072. DROP FUNCTION IF EXISTS groupoverlaps(integer, integer, character varying);
  2073. CREATE OR REPLACE FUNCTION groupoverlaps(bigint, bigint, character varying) RETURNS SETOF featuregroup
  2074. LANGUAGE sql
  2075. AS $_$
  2076. SELECT g2.*
  2077. FROM featuregroup g1,
  2078. featuregroup g2
  2079. WHERE g1.is_root = 1
  2080. AND ( g1.srcfeature_id = g2.srcfeature_id OR g2.srcfeature_id IS NULL )
  2081. AND g1.group_id = g2.group_id
  2082. AND g1.srcfeature_id = (SELECT feature_id FROM feature WHERE uniquename = $3)
  2083. AND boxquery($1, $2) @ boxrange(g1.fmin,g2.fmax)
  2084. $_$;
  2085. --
  2086. -- Name: groupcontains(bigint[], bigint[], character varying[]); Type: FUNCTION; Schema: frange; Owner: chado
  2087. --
  2088. DROP FUNCTION IF EXISTS groupcontains(integer[], integer[], character varying[]);
  2089. CREATE OR REPLACE FUNCTION groupcontains(bigint[], bigint[], character varying[]) RETURNS SETOF featuregroup
  2090. LANGUAGE plpgsql
  2091. AS $_$
  2092. DECLARE
  2093. mins alias for $1;
  2094. maxs alias for $2;
  2095. srcs alias for $3;
  2096. f featuregroup%ROWTYPE;
  2097. i int;
  2098. s int;
  2099. BEGIN
  2100. i := 1;
  2101. FOR i in array_lower( mins, 1 ) .. array_upper( mins, 1 ) LOOP
  2102. SELECT INTO s feature_id FROM feature WHERE uniquename = srcs[i];
  2103. FOR f IN
  2104. SELECT *
  2105. FROM featuregroup WHERE group_id IN (
  2106. SELECT group_id FROM featuregroup
  2107. WHERE (srcfeature_id = s OR srcfeature_id IS NULL)
  2108. AND fmin <= mins[i]
  2109. AND fmax >= maxs[i]
  2110. AND group_id IN (
  2111. SELECT group_id FROM groupoverlaps( mins[i], maxs[i] )
  2112. WHERE srcfeature_id = s
  2113. )
  2114. )
  2115. LOOP
  2116. RETURN NEXT f;
  2117. END LOOP;
  2118. END LOOP;
  2119. RETURN;
  2120. END;
  2121. $_$;
  2122. --
  2123. -- Name: groupcontains(bigint, bigint, character varying); Type: FUNCTION; Schema: frange; Owner: chado
  2124. --
  2125. DROP FUNCTION IF EXISTS groupcontains(integer, integer, character varying);
  2126. CREATE OR REPLACE FUNCTION groupcontains(bigint, bigint, character varying) RETURNS SETOF featuregroup
  2127. LANGUAGE sql
  2128. AS $_$
  2129. SELECT *
  2130. FROM groupoverlaps($1,$2,$3)
  2131. WHERE fmin <= $1 AND fmax >= $2
  2132. $_$;
  2133. --
  2134. -- Name: groupidentical(bigint[], bigint[], character varying[]); Type: FUNCTION; Schema: frange; Owner: chado
  2135. --
  2136. DROP FUNCTION IF EXISTS groupidentical(integer[], integer[], character varying[]);
  2137. CREATE OR REPLACE FUNCTION groupidentical(bigint[], bigint[], character varying[]) RETURNS SETOF featuregroup
  2138. LANGUAGE plpgsql
  2139. AS $_$
  2140. DECLARE
  2141. mins alias for $1;
  2142. maxs alias for $2;
  2143. srcs alias for $3;
  2144. f featuregroup%ROWTYPE;
  2145. i int;
  2146. s int;
  2147. BEGIN
  2148. i := 1;
  2149. FOR i in array_lower( mins, 1 ) .. array_upper( mins, 1 ) LOOP
  2150. SELECT INTO s feature_id FROM feature WHERE uniquename = srcs[i];
  2151. FOR f IN
  2152. SELECT *
  2153. FROM featuregroup WHERE group_id IN (
  2154. SELECT group_id FROM featuregroup
  2155. WHERE (srcfeature_id = s OR srcfeature_id IS NULL)
  2156. AND fmin = mins[i]
  2157. AND fmax = maxs[i]
  2158. AND group_id IN (
  2159. SELECT group_id FROM groupoverlaps( mins[i], maxs[i] )
  2160. WHERE srcfeature_id = s
  2161. )
  2162. )
  2163. LOOP
  2164. RETURN NEXT f;
  2165. END LOOP;
  2166. END LOOP;
  2167. RETURN;
  2168. END;
  2169. $_$;
  2170. --
  2171. -- Name: groupidentical(bigint, bigint, character varying); Type: FUNCTION; Schema: frange; Owner: chado
  2172. --
  2173. DROP FUNCTION IF EXISTS groupidentical(integer, integer, character varying);
  2174. CREATE OR REPLACE FUNCTION groupidentical(bigint, bigint, character varying) RETURNS SETOF featuregroup
  2175. LANGUAGE sql
  2176. AS $_$
  2177. SELECT *
  2178. FROM groupoverlaps($1,$2,$3)
  2179. WHERE fmin = $1 AND fmax = $2
  2180. $_$;
  2181. --
  2182. -- Name: groupinside(bigint[], bigint[], character varying[]); Type: FUNCTION; Schema: frange; Owner: chado
  2183. --
  2184. DROP FUNCTION IF EXISTS groupinside(integer[], integer[], character varying[]);
  2185. CREATE OR REPLACE FUNCTION groupinside(bigint[], bigint[], character varying[]) RETURNS SETOF featuregroup
  2186. LANGUAGE plpgsql
  2187. AS $_$
  2188. DECLARE
  2189. mins alias for $1;
  2190. maxs alias for $2;
  2191. srcs alias for $3;
  2192. f featuregroup%ROWTYPE;
  2193. i int;
  2194. s int;
  2195. BEGIN
  2196. i := 1;
  2197. FOR i in array_lower( mins, 1 ) .. array_upper( mins, 1 ) LOOP
  2198. SELECT INTO s feature_id FROM feature WHERE uniquename = srcs[i];
  2199. FOR f IN
  2200. SELECT *
  2201. FROM featuregroup WHERE group_id IN (
  2202. SELECT group_id FROM featuregroup
  2203. WHERE (srcfeature_id = s OR srcfeature_id IS NULL)
  2204. AND fmin >= mins[i]
  2205. AND fmax <= maxs[i]
  2206. AND group_id IN (
  2207. SELECT group_id FROM groupoverlaps( mins[i], maxs[i] )
  2208. WHERE srcfeature_id = s
  2209. )
  2210. )
  2211. LOOP
  2212. RETURN NEXT f;
  2213. END LOOP;
  2214. END LOOP;
  2215. RETURN;
  2216. END;
  2217. $_$;
  2218. --
  2219. -- Name: groupinside(bigint, bigint, character varying); Type: FUNCTION; Schema: frange; Owner: chado
  2220. --
  2221. DROP FUNCTION IF EXISTS groupinside(integer, integer, character varying);
  2222. CREATE OR REPLACE FUNCTION groupinside(bigint, bigint, character varying) RETURNS SETOF featuregroup
  2223. LANGUAGE sql
  2224. AS $_$
  2225. SELECT *
  2226. FROM groupoverlaps($1,$2,$3)
  2227. WHERE fmin >= $1 AND fmax <= $2
  2228. $_$;
  2229. SET search_path = public, frange,pg_catalog;
  2230. --
  2231. -- Name: cvtermpath; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2232. --
  2233. ALTER TABLE cvtermpath
  2234. ALTER cvtermpath_id TYPE bigint,
  2235. ALTER type_id TYPE bigint,
  2236. ALTER subject_id TYPE bigint,
  2237. ALTER object_id TYPE bigint,
  2238. ALTER cv_id TYPE bigint;
  2239. --
  2240. -- Name: create_soi(); Type: FUNCTION; Schema: public; Owner: chado
  2241. --
  2242. DROP FUNCTION IF EXISTS create_soi();
  2243. CREATE OR REPLACE FUNCTION create_soi() RETURNS integer
  2244. LANGUAGE plpgsql
  2245. AS $$
  2246. DECLARE
  2247. parent soi_type%ROWTYPE;
  2248. isa_id cvterm.cvterm_id%TYPE;
  2249. soi_term TEXT := 'soi';
  2250. soi_def TEXT := 'ontology of SO feature instantiated in database';
  2251. soi_cvid bigint;
  2252. soiterm_id bigint;
  2253. pcount INTEGER;
  2254. count INTEGER := 0;
  2255. cquery TEXT;
  2256. BEGIN
  2257. SELECT INTO isa_id cvterm_id FROM cvterm WHERE name = 'isa';
  2258. SELECT INTO soi_cvid cv_id FROM cv WHERE name = soi_term;
  2259. IF (soi_cvid > 0) THEN
  2260. DELETE FROM cvtermpath WHERE cv_id = soi_cvid;
  2261. DELETE FROM cvterm WHERE cv_id = soi_cvid;
  2262. ELSE
  2263. INSERT INTO cv (name, definition) VALUES(soi_term, soi_def);
  2264. END IF;
  2265. SELECT INTO soi_cvid cv_id FROM cv WHERE name = soi_term;
  2266. INSERT INTO cvterm (name, cv_id) VALUES(soi_term, soi_cvid);
  2267. SELECT INTO soiterm_id cvterm_id FROM cvterm WHERE name = soi_term;
  2268. CREATE TEMP TABLE tmpcvtr (tmp_type INT, type_id bigint, subject_id bigint, object_id bigint);
  2269. CREATE UNIQUE INDEX u_tmpcvtr ON tmpcvtr(subject_id, object_id);
  2270. INSERT INTO tmpcvtr (tmp_type, type_id, subject_id, object_id)
  2271. SELECT DISTINCT isa_id, soiterm_id, f.type_id, soiterm_id FROM feature f, cvterm t
  2272. WHERE f.type_id = t.cvterm_id AND f.type_id > 0;
  2273. EXECUTE 'select * from tmpcvtr where type_id = ' || soiterm_id || ';';
  2274. get diagnostics pcount = row_count;
  2275. raise notice 'all types in feature %',pcount;
  2276. --- do it hard way, delete any child feature type from above (NOT IN clause did not work)
  2277. FOR parent IN SELECT DISTINCT 0, t.cvterm_id, 0 FROM feature c, feature_relationship fr, cvterm t
  2278. WHERE t.cvterm_id = c.type_id AND c.feature_id = fr.subject_id LOOP
  2279. DELETE FROM tmpcvtr WHERE type_id = soiterm_id and object_id = soiterm_id
  2280. AND subject_id = parent.subject_id;
  2281. END LOOP;
  2282. EXECUTE 'select * from tmpcvtr where type_id = ' || soiterm_id || ';';
  2283. get diagnostics pcount = row_count;
  2284. raise notice 'all types in feature after delete child %',pcount;
  2285. --- create feature type relationship (store in tmpcvtr)
  2286. CREATE TEMP TABLE tmproot (cv_id bigint not null, cvterm_id bigint not null, status INTEGER DEFAULT 0);
  2287. cquery := 'SELECT * FROM tmproot tmp WHERE tmp.status = 0;';
  2288. ---temp use tmpcvtr to hold instantiated SO relationship for speed
  2289. ---use soterm_id as type_id, will delete from tmpcvtr
  2290. ---us tmproot for this as well
  2291. INSERT INTO tmproot (cv_id, cvterm_id, status) SELECT DISTINCT soi_cvid, c.subject_id, 0 FROM tmpcvtr c
  2292. WHERE c.object_id = soiterm_id;
  2293. EXECUTE cquery;
  2294. GET DIAGNOSTICS pcount = ROW_COUNT;
  2295. WHILE (pcount > 0) LOOP
  2296. RAISE NOTICE 'num child temp (to be inserted) in tmpcvtr: %',pcount;
  2297. INSERT INTO tmpcvtr (tmp_type, type_id, subject_id, object_id)
  2298. SELECT DISTINCT fr.type_id, soiterm_id, c.type_id, p.cvterm_id FROM feature c, feature_relationship fr,
  2299. tmproot p, feature pf, cvterm t WHERE c.feature_id = fr.subject_id AND fr.object_id = pf.feature_id
  2300. AND p.cvterm_id = pf.type_id AND t.cvterm_id = c.type_id AND p.status = 0;
  2301. UPDATE tmproot SET status = 1 WHERE status = 0;
  2302. INSERT INTO tmproot (cv_id, cvterm_id, status)
  2303. SELECT DISTINCT soi_cvid, c.type_id, 0 FROM feature c, feature_relationship fr,
  2304. tmproot tmp, feature p, cvterm t WHERE c.feature_id = fr.subject_id AND fr.object_id = p.feature_id
  2305. AND tmp.cvterm_id = p.type_id AND t.cvterm_id = c.type_id AND tmp.status = 1;
  2306. UPDATE tmproot SET status = 2 WHERE status = 1;
  2307. EXECUTE cquery;
  2308. GET DIAGNOSTICS pcount = ROW_COUNT;
  2309. END LOOP;
  2310. DELETE FROM tmproot;
  2311. ---get transitive closure for soi
  2312. PERFORM _fill_cvtermpath4soi(soiterm_id, soi_cvid);
  2313. DROP TABLE tmpcvtr;
  2314. DROP TABLE tmproot;
  2315. RETURN 1;
  2316. END;
  2317. $$;
  2318. --
  2319. -- Name: feature; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2320. --
  2321. ALTER TABLE feature
  2322. ALTER feature_id TYPE bigint,
  2323. ALTER dbxref_id TYPE bigint,
  2324. ALTER organism_id TYPE bigint,
  2325. ALTER seqlen TYPE bigint,
  2326. ALTER type_id TYPE bigint;
  2327. --
  2328. -- Name: feature_disjoint_from(bigint); Type: FUNCTION; Schema: public; Owner: chado
  2329. --
  2330. DROP FUNCTION IF EXISTS feature_disjoint_from(integer);
  2331. CREATE OR REPLACE FUNCTION feature_disjoint_from(bigint) RETURNS SETOF feature
  2332. LANGUAGE sql
  2333. AS $_$SELECT feature.*
  2334. FROM feature
  2335. INNER JOIN featureloc AS x ON (x.feature_id=feature.feature_id)
  2336. INNER JOIN featureloc AS y ON (y.feature_id = $1)
  2337. WHERE
  2338. x.srcfeature_id = y.srcfeature_id AND
  2339. ( x.fmax < y.fmin OR x.fmin > y.fmax ) $_$;
  2340. --
  2341. -- Name: feature_overlaps(bigint); Type: FUNCTION; Schema: public; Owner: chado
  2342. --
  2343. DROP FUNCTION IF EXISTS feature_overlaps(integer);
  2344. CREATE OR REPLACE FUNCTION feature_overlaps(bigint) RETURNS SETOF feature
  2345. LANGUAGE sql
  2346. AS $_$SELECT feature.*
  2347. FROM feature
  2348. INNER JOIN featureloc AS x ON (x.feature_id=feature.feature_id)
  2349. INNER JOIN featureloc AS y ON (y.feature_id = $1)
  2350. WHERE
  2351. x.srcfeature_id = y.srcfeature_id AND
  2352. ( x.fmax >= y.fmin AND x.fmin <= y.fmax ) $_$;
  2353. --
  2354. -- Name: featureloc; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2355. --
  2356. ALTER TABLE FEATURELOC
  2357. ALTER featureloc_id TYPE bigint,
  2358. ALTER feature_id TYPE bigint,
  2359. ALTER srcfeature_id TYPE bigint,
  2360. ALTER fmin TYPE bigint,
  2361. ALTER fmax TYPE bigint;
  2362. CREATE INDEX binloc_boxrange_src ON featureloc USING RTREE (boxrange(srcfeature_id,fmin, fmax));
  2363. --
  2364. -- Name: featureloc_slice(bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
  2365. --
  2366. DROP FUNCTION IF EXISTS featureloc_slice(integer, integer);
  2367. CREATE OR REPLACE FUNCTION featureloc_slice(bigint, bigint) RETURNS SETOF featureloc
  2368. LANGUAGE sql
  2369. AS $_$SELECT * from featureloc where boxquery($1, $2) @ boxrange(fmin,fmax)$_$;
  2370. --
  2371. -- Name: featureloc_slice(integer, bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
  2372. --
  2373. DROP FUNCTION IF EXISTS featureloc_slice(integer, integer, integer);
  2374. CREATE OR REPLACE FUNCTION featureloc_slice(integer, bigint, bigint) RETURNS SETOF featureloc
  2375. LANGUAGE sql
  2376. AS $_$SELECT *
  2377. FROM featureloc
  2378. WHERE boxquery($2, $3) @ boxrange(fmin,fmax)
  2379. AND srcfeature_id = $1 $_$;
  2380. --
  2381. -- Name: featureloc_slice(bigint, bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
  2382. --
  2383. CREATE OR REPLACE FUNCTION featureloc_slice(bigint, bigint, bigint) RETURNS SETOF featureloc
  2384. LANGUAGE sql
  2385. AS $_$SELECT *
  2386. FROM featureloc
  2387. WHERE boxquery($1, $2, $3) && boxrange(srcfeature_id,fmin,fmax)$_$;
  2388. --
  2389. -- Name: featureloc_slice(character varying, bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
  2390. --
  2391. DROP FUNCTION IF EXISTS featureloc_slice(character varying, integer, integer);
  2392. CREATE OR REPLACE FUNCTION featureloc_slice(character varying, bigint, bigint) RETURNS SETOF featureloc
  2393. LANGUAGE sql
  2394. AS $_$SELECT featureloc.*
  2395. FROM featureloc
  2396. INNER JOIN feature AS srcf ON (srcf.feature_id = featureloc.srcfeature_id)
  2397. WHERE boxquery($2, $3) @ boxrange(fmin,fmax)
  2398. AND srcf.name = $1 $_$;
  2399. --
  2400. -- Name: cv; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2401. --
  2402. ALTER TABLE cv ALTER cv_id TYPE bigint;
  2403. --
  2404. -- Name: cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2405. --
  2406. ALTER TABLE cvterm
  2407. ALTER cvterm_id TYPE bigint,
  2408. ALTER cv_id TYPE bigint,
  2409. ALTER dbxref_id TYPE bigint;
  2410. --
  2411. -- Name: organism; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2412. --
  2413. ALTER TABLE organism
  2414. ALTER organism_id TYPE bigint,
  2415. ADD infraspecific_name character varying(1024),
  2416. ADD type_id bigint;
  2417. --
  2418. -- Name: get_cv_id_for_feature(); Type: FUNCTION; Schema: public; Owner: chado
  2419. --
  2420. DROP FUNCTION IF EXISTS get_cv_id_for_feature();
  2421. CREATE OR REPLACE FUNCTION get_cv_id_for_feature() RETURNS bigint
  2422. LANGUAGE sql
  2423. AS $$SELECT cv_id FROM cv WHERE name='sequence'$$;
  2424. --
  2425. -- Name: get_cv_id_for_feature_relationsgip(); Type: FUNCTION; Schema: public; Owner: chado
  2426. --
  2427. DROP FUNCTION IF EXISTS get_cv_id_for_feature_relationsgip();
  2428. CREATE OR REPLACE FUNCTION get_cv_id_for_feature_relationsgip() RETURNS bigint
  2429. LANGUAGE sql
  2430. AS $$SELECT cv_id FROM cv WHERE name='relationship'$$;
  2431. --
  2432. -- Name: get_cv_id_for_featureprop(); Type: FUNCTION; Schema: public; Owner: chado
  2433. --
  2434. DROP FUNCTION IF EXISTS get_cv_id_for_featureprop();
  2435. CREATE OR REPLACE FUNCTION get_cv_id_for_featureprop() RETURNS bigint
  2436. LANGUAGE sql
  2437. AS $$SELECT cv_id FROM cv WHERE name='feature_property'$$;
  2438. --
  2439. -- Name: get_cycle_cvterm_id(integer); Type: FUNCTION; Schema: public; Owner: chado
  2440. --
  2441. DROP FUNCTION IF EXISTS get_cycle_cvterm_id(integer);
  2442. CREATE OR REPLACE FUNCTION get_cycle_cvterm_id(integer) RETURNS integer
  2443. LANGUAGE plpgsql
  2444. AS $_$
  2445. DECLARE
  2446. cvid alias for $1;
  2447. root cvterm%ROWTYPE;
  2448. rtn int;
  2449. BEGIN
  2450. CREATE TEMP TABLE tmpcvtermpath(object_id bigint, subject_id bigint, cv_id bigint, type_id bigint, pathdistance int);
  2451. CREATE INDEX tmp_cvtpath1 ON tmpcvtermpath(object_id, subject_id);
  2452. FOR root IN SELECT DISTINCT t.* from cvterm t LEFT JOIN cvterm_relationship r ON (t.cvterm_id = r.subject_id) INNER JOIN cvterm_relationship r2 ON (t.cvterm_id = r2.object_id) WHERE t.cv_id = cvid AND r.subject_id is null LOOP
  2453. SELECT INTO rtn _fill_cvtermpath4root2detect_cycle(root.cvterm_id, root.cv_id);
  2454. IF (rtn > 0) THEN
  2455. DROP TABLE tmpcvtermpath;
  2456. RETURN rtn;
  2457. END IF;
  2458. END LOOP;
  2459. DROP TABLE tmpcvtermpath;
  2460. RETURN 0;
  2461. END;
  2462. $_$;
  2463. --
  2464. -- Name: get_cycle_cvterm_id(character varying); Type: FUNCTION; Schema: public; Owner: chado
  2465. --
  2466. DROP FUNCTION IF EXISTS get_cycle_cvterm_id(character varying);
  2467. CREATE OR REPLACE FUNCTION get_cycle_cvterm_id(character varying) RETURNS integer
  2468. LANGUAGE plpgsql
  2469. AS $_$
  2470. DECLARE
  2471. cvname alias for $1;
  2472. cv_id bigint;
  2473. rtn int;
  2474. BEGIN
  2475. SELECT INTO cv_id cv.cv_id from cv WHERE cv.name = cvname;
  2476. SELECT INTO rtn get_cycle_cvterm_id(cv_id);
  2477. RETURN rtn;
  2478. END;
  2479. $_$;
  2480. --
  2481. -- Name: get_cycle_cvterm_id(integer, integer); Type: FUNCTION; Schema: public; Owner: chado
  2482. --
  2483. DROP FUNCTION IF EXISTS get_cycle_cvterm_id(integer, integer);
  2484. CREATE OR REPLACE FUNCTION get_cycle_cvterm_id(integer, integer) RETURNS integer
  2485. LANGUAGE plpgsql
  2486. AS $_$
  2487. DECLARE
  2488. cvid alias for $1;
  2489. rootid alias for $2;
  2490. rtn int;
  2491. BEGIN
  2492. CREATE TEMP TABLE tmpcvtermpath(object_id bigint, subject_id bigint, cv_id bigint, type_id bigint, pathdistance int);
  2493. CREATE INDEX tmp_cvtpath1 ON tmpcvtermpath(object_id, subject_id);
  2494. SELECT INTO rtn _fill_cvtermpath4root2detect_cycle(rootid, cvid);
  2495. IF (rtn > 0) THEN
  2496. DROP TABLE tmpcvtermpath;
  2497. RETURN rtn;
  2498. END IF;
  2499. DROP TABLE tmpcvtermpath;
  2500. RETURN 0;
  2501. END;
  2502. $_$;
  2503. --
  2504. -- Name: get_feature_id(character varying, character varying, character varying); Type: FUNCTION; Schema: public; Owner: chado
  2505. --
  2506. DROP FUNCTION IF EXISTS get_feature_id(character varying, character varying, character varying);
  2507. CREATE OR REPLACE FUNCTION get_feature_id(character varying, character varying, character varying) RETURNS bigint
  2508. LANGUAGE sql
  2509. AS $_$
  2510. SELECT feature_id
  2511. FROM feature
  2512. WHERE uniquename=$1
  2513. AND type_id=get_feature_type_id($2)
  2514. AND organism_id=get_organism_id($3)
  2515. $_$;
  2516. --
  2517. -- Name: get_feature_relationship_type_id(character varying); Type: FUNCTION; Schema: public; Owner: chado
  2518. --
  2519. DROP FUNCTION IF EXISTS get_feature_relationship_type_id(character varying);
  2520. CREATE OR REPLACE FUNCTION get_feature_relationship_type_id(character varying) RETURNS bigint
  2521. LANGUAGE sql
  2522. AS $_$
  2523. SELECT cvterm_id
  2524. FROM cv INNER JOIN cvterm USING (cv_id)
  2525. WHERE cvterm.name=$1 AND cv.name='relationship'
  2526. $_$;
  2527. --
  2528. -- Name: get_feature_type_id(character varying); Type: FUNCTION; Schema: public; Owner: chado
  2529. --
  2530. DROP FUNCTION IF EXISTS get_feature_type_id(character varying);
  2531. CREATE OR REPLACE FUNCTION get_feature_type_id(character varying) RETURNS bigint
  2532. LANGUAGE sql
  2533. AS $_$
  2534. SELECT cvterm_id
  2535. FROM cv INNER JOIN cvterm USING (cv_id)
  2536. WHERE cvterm.name=$1 AND cv.name='sequence'
  2537. $_$;
  2538. --
  2539. -- Name: get_featureprop_type_id(character varying); Type: FUNCTION; Schema: public; Owner: chado
  2540. --
  2541. DROP FUNCTION IF EXISTS get_featureprop_type_id(character varying);
  2542. CREATE OR REPLACE FUNCTION get_featureprop_type_id(character varying) RETURNS bigint
  2543. LANGUAGE sql
  2544. AS $_$
  2545. SELECT cvterm_id
  2546. FROM cv INNER JOIN cvterm USING (cv_id)
  2547. WHERE cvterm.name=$1 AND cv.name='feature_property'
  2548. $_$;
  2549. --
  2550. -- Name: get_organism_id(character varying); Type: FUNCTION; Schema: public; Owner: chado
  2551. --
  2552. DROP FUNCTION IF EXISTS get_organism_id(character varying);
  2553. CREATE OR REPLACE FUNCTION get_organism_id(character varying) RETURNS bigint
  2554. LANGUAGE sql
  2555. AS $_$
  2556. SELECT organism_id
  2557. FROM organism
  2558. WHERE genus=substring($1,1,position(' ' IN $1)-1)
  2559. AND species=substring($1,position(' ' IN $1)+1)
  2560. $_$;
  2561. --
  2562. -- Name: get_organism_id(character varying, character varying); Type: FUNCTION; Schema: public; Owner: chado
  2563. --
  2564. DROP FUNCTION IF EXISTS get_organism_id(character varying, character varying);
  2565. CREATE OR REPLACE FUNCTION get_organism_id(character varying, character varying) RETURNS bigint
  2566. LANGUAGE sql
  2567. AS $_$
  2568. SELECT organism_id
  2569. FROM organism
  2570. WHERE genus=$1
  2571. AND species=$2
  2572. $_$;
  2573. --
  2574. -- Name: get_organism_id_abbrev(character varying); Type: FUNCTION; Schema: public; Owner: chado
  2575. --
  2576. DROP FUNCTION IF EXISTS get_organism_id_abbrev(character varying);
  2577. CREATE OR REPLACE FUNCTION get_organism_id_abbrev(character varying) RETURNS bigint
  2578. LANGUAGE sql
  2579. AS $_$
  2580. SELECT organism_id
  2581. FROM organism
  2582. WHERE substr(genus,1,1)=substring($1,1,1)
  2583. AND species=substring($1,position(' ' IN $1)+1)
  2584. $_$;
  2585. --
  2586. -- Name: db; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2587. --
  2588. ALTER TABLE db ALTER db_id TYPE bigint;
  2589. --
  2590. -- Name: dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2591. --
  2592. ALTER TABLE dbxref
  2593. ALTER dbxref_id TYPE bigint,
  2594. ALTER db_id TYPE bigint,
  2595. ALTER accession TYPE character varying(1024);
  2596. --
  2597. -- Name: feature_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2598. --
  2599. ALTER TABLE feature_cvterm
  2600. ALTER feature_cvterm_id TYPE bigint,
  2601. ALTER feature_id TYPE bigint,
  2602. ALTER cvterm_id TYPE bigint,
  2603. ALTER pub_id TYPE bigint;
  2604. --
  2605. -- Name: feature_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2606. --
  2607. ALTER TABLE feature_dbxref
  2608. ALTER feature_dbxref_id TYPE bigint,
  2609. ALTER feature_id TYPE bigint,
  2610. ALTER dbxref_id TYPE bigint;
  2611. --
  2612. -- Name: TABLE feature_dbxref; Type: COMMENT; Schema: public; Owner: chado
  2613. --
  2614. COMMENT ON TABLE feature_dbxref IS 'Links a feature to dbxrefs.';
  2615. --
  2616. -- Name: COLUMN feature_dbxref.is_current; Type: COMMENT; Schema: public; Owner: chado
  2617. --
  2618. COMMENT ON COLUMN feature_dbxref.is_current IS 'True if this secondary dbxref is
  2619. the most up to date accession in the corresponding db. Retired accessions
  2620. should set this field to false';
  2621. --
  2622. -- Name: feature_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2623. --
  2624. ALTER TABLE feature_pub
  2625. ALTER feature_pub_id TYPE bigint,
  2626. ALTER feature_id TYPE bigint,
  2627. ALTER pub_id TYPE bigint;
  2628. --
  2629. -- Name: feature_synonym; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2630. --
  2631. ALTER TABLE feature_synonym
  2632. ALTER feature_synonym_id TYPE bigint,
  2633. ALTER synonym_id TYPE bigint,
  2634. ALTER feature_id TYPE bigint,
  2635. ALTER pub_id TYPE bigint;
  2636. --
  2637. -- Name: featureprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2638. --
  2639. ALTER TABLE featureprop
  2640. ALTER featureprop_id TYPE bigint,
  2641. ALTER feature_id TYPE bigint,
  2642. ALTER type_id TYPE bigint;
  2643. --
  2644. -- Name: pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2645. --
  2646. ALTER TABLE pub
  2647. ALTER pub_id TYPE bigint,
  2648. ALTER type_id TYPE bigint;
  2649. --
  2650. -- Name: synonym; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2651. --
  2652. ALTER TABLE synonym
  2653. ALTER synonym_id TYPE bigint,
  2654. ALTER type_id TYPE bigint;
  2655. --
  2656. -- Name: phylonode_depth(bigint); Type: FUNCTION; Schema: public; Owner: chado
  2657. --
  2658. DROP FUNCTION IF EXISTS phylonode_depth(integer);
  2659. CREATE OR REPLACE FUNCTION phylonode_depth(bigint) RETURNS double precision
  2660. LANGUAGE plpgsql
  2661. AS $_$DECLARE id ALIAS FOR $1;
  2662. DECLARE depth FLOAT := 0;
  2663. DECLARE curr_node phylonode%ROWTYPE;
  2664. BEGIN
  2665. SELECT INTO curr_node *
  2666. FROM phylonode
  2667. WHERE phylonode_id=id;
  2668. depth = depth + curr_node.distance;
  2669. IF curr_node.parent_phylonode_id IS NULL
  2670. THEN RETURN depth;
  2671. ELSE RETURN depth + phylonode_depth(curr_node.parent_phylonode_id);
  2672. END IF;
  2673. END
  2674. $_$;
  2675. --
  2676. -- Name: phylonode_height(bigint); Type: FUNCTION; Schema: public; Owner: chado
  2677. --
  2678. DROP FUNCTION IF EXISTS phylonode_height(integer);
  2679. CREATE OR REPLACE FUNCTION phylonode_height(bigint) RETURNS double precision
  2680. LANGUAGE sql
  2681. AS $_$
  2682. SELECT coalesce(max(phylonode_height(phylonode_id) + distance), 0.0)
  2683. FROM phylonode
  2684. WHERE parent_phylonode_id = $1
  2685. $_$;
  2686. --
  2687. -- Name: subsequence(bigint, bigint, bigint, integer); Type: FUNCTION; Schema: public; Owner: chado
  2688. --
  2689. DROP FUNCTION IF EXISTS subsequence(integer, integer, integer, integer);
  2690. CREATE OR REPLACE FUNCTION subsequence(bigint, bigint, bigint, integer) RETURNS text
  2691. LANGUAGE sql
  2692. AS $_$SELECT
  2693. CASE WHEN $4<0
  2694. THEN reverse_complement(substring(srcf.residues,CAST(($2+1) as int),CAST(($3-$2) as int)))
  2695. ELSE substring(residues,CAST(($2+1) as int),CAST(($3-$2) as int))
  2696. END AS residues
  2697. FROM feature AS srcf
  2698. WHERE
  2699. srcf.feature_id=$1$_$;
  2700. --
  2701. -- Name: subsequence_by_feature(bigint, integer, integer); Type: FUNCTION; Schema: public; Owner: chado
  2702. --
  2703. DROP FUNCTION IF EXISTS subsequence_by_feature(integer, integer, integer);
  2704. CREATE OR REPLACE FUNCTION subsequence_by_feature(bigint, integer, integer) RETURNS text
  2705. LANGUAGE sql
  2706. AS $_$SELECT
  2707. CASE WHEN strand<0
  2708. THEN reverse_complement(substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int)))
  2709. ELSE substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int))
  2710. END AS residues
  2711. FROM feature AS srcf
  2712. INNER JOIN featureloc ON (srcf.feature_id=featureloc.srcfeature_id)
  2713. WHERE
  2714. featureloc.feature_id=$1 AND
  2715. featureloc.rank=$2 AND
  2716. featureloc.locgroup=$3$_$;
  2717. --
  2718. -- Name: subsequence_by_feature(bigint); Type: FUNCTION; Schema: public; Owner: chado
  2719. --
  2720. DROP FUNCTION IF EXISTS subsequence_by_feature(integer);
  2721. CREATE OR REPLACE FUNCTION subsequence_by_feature(bigint) RETURNS text
  2722. LANGUAGE sql
  2723. AS $_$SELECT subsequence_by_feature($1,0,0)$_$;
  2724. --
  2725. -- Name: subsequence_by_featureloc(bigint); Type: FUNCTION; Schema: public; Owner: chado
  2726. --
  2727. DROP FUNCTION IF EXISTS subsequence_by_featureloc(integer);
  2728. CREATE OR REPLACE FUNCTION subsequence_by_featureloc(bigint) RETURNS text
  2729. LANGUAGE sql
  2730. AS $_$SELECT
  2731. CASE WHEN strand<0
  2732. THEN reverse_complement(substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int)))
  2733. ELSE substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int))
  2734. END AS residues
  2735. FROM feature AS srcf
  2736. INNER JOIN featureloc ON (srcf.feature_id=featureloc.srcfeature_id)
  2737. WHERE
  2738. featureloc_id=$1$_$;
  2739. --
  2740. -- Name: subsequence_by_subfeatures(bigint, bigint, integer, integer); Type: FUNCTION; Schema: public; Owner: chado
  2741. --
  2742. DROP FUNCTION IF EXISTS subsequence_by_subfeatures(integer, integer, integer, integer);
  2743. CREATE OR REPLACE FUNCTION subsequence_by_subfeatures(bigint, bigint, integer, integer) RETURNS text
  2744. LANGUAGE plpgsql
  2745. AS $_$
  2746. DECLARE v_feature_id ALIAS FOR $1;
  2747. DECLARE v_rtype_id ALIAS FOR $2;
  2748. DECLARE v_rank ALIAS FOR $3;
  2749. DECLARE v_locgroup ALIAS FOR $4;
  2750. DECLARE subseq TEXT;
  2751. DECLARE seqrow RECORD;
  2752. BEGIN
  2753. subseq = '';
  2754. FOR seqrow IN
  2755. SELECT
  2756. CASE WHEN strand<0
  2757. THEN reverse_complement(substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int)))
  2758. ELSE substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int))
  2759. END AS residues
  2760. FROM feature AS srcf
  2761. INNER JOIN featureloc ON (srcf.feature_id=featureloc.srcfeature_id)
  2762. INNER JOIN feature_relationship AS fr
  2763. ON (fr.subject_id=featureloc.feature_id)
  2764. WHERE
  2765. fr.object_id=v_feature_id AND
  2766. fr.type_id=v_rtype_id AND
  2767. featureloc.rank=v_rank AND
  2768. featureloc.locgroup=v_locgroup
  2769. ORDER BY fr.rank
  2770. LOOP
  2771. subseq = subseq || seqrow.residues;
  2772. END LOOP;
  2773. RETURN subseq;
  2774. END
  2775. $_$;
  2776. --
  2777. -- Name: subsequence_by_subfeatures(bigint); Type: FUNCTION; Schema: public; Owner: chado
  2778. --
  2779. DROP FUNCTION IF EXISTS subsequence_by_subfeatures(integer);
  2780. CREATE OR REPLACE FUNCTION subsequence_by_subfeatures(bigint) RETURNS text
  2781. LANGUAGE sql
  2782. AS $_$
  2783. SELECT subsequence_by_subfeatures($1,get_feature_relationship_type_id('part_of'),0,0)
  2784. $_$;
  2785. --
  2786. -- Name: subsequence_by_subfeatures(bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
  2787. --
  2788. DROP FUNCTION IF EXISTS subsequence_by_subfeatures(integer, integer);
  2789. CREATE OR REPLACE FUNCTION subsequence_by_subfeatures(bigint, bigint) RETURNS text
  2790. LANGUAGE sql
  2791. AS $_$SELECT subsequence_by_subfeatures($1,$2,0,0)$_$;
  2792. --
  2793. -- Name: subsequence_by_typed_subfeatures(bigint, bigint, integer, integer); Type: FUNCTION; Schema: public; Owner: chado
  2794. --
  2795. DROP FUNCTION IF EXISTS subsequence_by_typed_subfeatures(integer, integer, integer, integer);
  2796. CREATE OR REPLACE FUNCTION subsequence_by_typed_subfeatures(bigint, bigint, integer, integer) RETURNS text
  2797. LANGUAGE plpgsql
  2798. AS $_$
  2799. DECLARE v_feature_id ALIAS FOR $1;
  2800. DECLARE v_ftype_id ALIAS FOR $2;
  2801. DECLARE v_rank ALIAS FOR $3;
  2802. DECLARE v_locgroup ALIAS FOR $4;
  2803. DECLARE subseq TEXT;
  2804. DECLARE seqrow RECORD;
  2805. BEGIN
  2806. subseq = '';
  2807. FOR seqrow IN
  2808. SELECT
  2809. CASE WHEN strand<0
  2810. THEN reverse_complement(substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int)))
  2811. ELSE substring(srcf.residues,CAST(fmin+1 as int),CAST((fmax-fmin) as int))
  2812. END AS residues
  2813. FROM feature AS srcf
  2814. INNER JOIN featureloc ON (srcf.feature_id=featureloc.srcfeature_id)
  2815. INNER JOIN feature AS subf ON (subf.feature_id=featureloc.feature_id)
  2816. INNER JOIN feature_relationship AS fr ON (fr.subject_id=subf.feature_id)
  2817. WHERE
  2818. fr.object_id=v_feature_id AND
  2819. subf.type_id=v_ftype_id AND
  2820. featureloc.rank=v_rank AND
  2821. featureloc.locgroup=v_locgroup
  2822. ORDER BY fr.rank
  2823. LOOP
  2824. subseq = subseq || seqrow.residues;
  2825. END LOOP;
  2826. RETURN subseq;
  2827. END
  2828. $_$;
  2829. --
  2830. -- Name: subsequence_by_typed_subfeatures(bigint, bigint); Type: FUNCTION; Schema: public; Owner: chado
  2831. --
  2832. DROP FUNCTION IF EXISTS subsequence_by_typed_subfeatures(integer, integer);
  2833. CREATE OR REPLACE FUNCTION subsequence_by_typed_subfeatures(bigint, bigint) RETURNS text
  2834. LANGUAGE sql
  2835. AS $_$SELECT subsequence_by_typed_subfeatures($1,$2,0,0)$_$;
  2836. --
  2837. -- Name: acquisition; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2838. --
  2839. ALTER TABLE acquisition
  2840. ALTER acquisition_id TYPE bigint,
  2841. ALTER assay_id TYPE bigint,
  2842. ALTER protocol_id TYPE bigint,
  2843. ALTER channel_id TYPE bigint;
  2844. --
  2845. -- Name: acquisition_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2846. --
  2847. ALTER TABLE acquisition_relationship
  2848. ALTER acquisition_relationship_id TYPE bigint,
  2849. ALTER subject_id TYPE bigint,
  2850. ALTER type_id TYPE bigint,
  2851. ALTER object_id TYPE bigint;
  2852. --
  2853. -- Name: acquisitionprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2854. --
  2855. ALTER TABLE acquisitionprop
  2856. ALTER acquisitionprop_id TYPE bigint,
  2857. ALTER acquisition_id TYPE bigint,
  2858. ALTER type_id TYPE bigint;
  2859. --
  2860. -- Name: analysis; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2861. --
  2862. ALTER TABLE analysis ALTER analysis_id TYPE bigint;
  2863. --
  2864. -- Name: analysis_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2865. --
  2866. CREATE TABLE analysis_cvterm (
  2867. analysis_cvterm_id bigint NOT NULL,
  2868. analysis_id bigint NOT NULL,
  2869. cvterm_id bigint NOT NULL,
  2870. is_not boolean DEFAULT false NOT NULL,
  2871. rank integer DEFAULT 0 NOT NULL
  2872. );
  2873. --
  2874. -- Name: TABLE analysis_cvterm; Type: COMMENT; Schema: public; Owner: chado
  2875. --
  2876. COMMENT ON TABLE analysis_cvterm IS 'Associate a term from a cv with an analysis.';
  2877. --
  2878. -- Name: COLUMN analysis_cvterm.is_not; Type: COMMENT; Schema: public; Owner: chado
  2879. --
  2880. COMMENT ON COLUMN analysis_cvterm.is_not IS 'If this is set to true, then this
  2881. annotation is interpreted as a NEGATIVE annotation - i.e. the analysis does
  2882. NOT have the specified term.';
  2883. --
  2884. -- Name: analysis_cvterm_analysis_cvterm_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  2885. --
  2886. CREATE SEQUENCE analysis_cvterm_analysis_cvterm_id_seq
  2887. START WITH 1
  2888. INCREMENT BY 1
  2889. NO MINVALUE
  2890. NO MAXVALUE
  2891. CACHE 1;
  2892. --
  2893. -- Name: analysis_cvterm_analysis_cvterm_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  2894. --
  2895. ALTER SEQUENCE analysis_cvterm_analysis_cvterm_id_seq OWNED BY analysis_cvterm.analysis_cvterm_id;
  2896. --
  2897. -- Name: analysis_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2898. --
  2899. CREATE TABLE analysis_dbxref (
  2900. analysis_dbxref_id bigint NOT NULL,
  2901. analysis_id bigint NOT NULL,
  2902. dbxref_id bigint NOT NULL,
  2903. is_current boolean DEFAULT true NOT NULL
  2904. );
  2905. --
  2906. -- Name: TABLE analysis_dbxref; Type: COMMENT; Schema: public; Owner: chado
  2907. --
  2908. COMMENT ON TABLE analysis_dbxref IS 'Links an analysis to dbxrefs.';
  2909. --
  2910. -- Name: COLUMN analysis_dbxref.is_current; Type: COMMENT; Schema: public; Owner: chado
  2911. --
  2912. COMMENT ON COLUMN analysis_dbxref.is_current IS 'True if this dbxref
  2913. is the most up to date accession in the corresponding db. Retired
  2914. accessions should set this field to false';
  2915. --
  2916. -- Name: analysis_dbxref_analysis_dbxref_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  2917. --
  2918. CREATE SEQUENCE analysis_dbxref_analysis_dbxref_id_seq
  2919. START WITH 1
  2920. INCREMENT BY 1
  2921. NO MINVALUE
  2922. NO MAXVALUE
  2923. CACHE 1;
  2924. --
  2925. -- Name: analysis_dbxref_analysis_dbxref_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  2926. --
  2927. ALTER SEQUENCE analysis_dbxref_analysis_dbxref_id_seq OWNED BY analysis_dbxref.analysis_dbxref_id;
  2928. --
  2929. -- Name: analysis_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2930. --
  2931. CREATE TABLE analysis_pub (
  2932. analysis_pub_id bigint NOT NULL,
  2933. analysis_id bigint NOT NULL,
  2934. pub_id bigint NOT NULL
  2935. );
  2936. --
  2937. -- Name: TABLE analysis_pub; Type: COMMENT; Schema: public; Owner: chado
  2938. --
  2939. COMMENT ON TABLE analysis_pub IS 'Provenance. Linking table between analyses and the publications that mention them.';
  2940. --
  2941. -- Name: analysis_pub_analysis_pub_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  2942. --
  2943. CREATE SEQUENCE analysis_pub_analysis_pub_id_seq
  2944. START WITH 1
  2945. INCREMENT BY 1
  2946. NO MINVALUE
  2947. NO MAXVALUE
  2948. CACHE 1;
  2949. --
  2950. -- Name: analysis_pub_analysis_pub_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  2951. --
  2952. ALTER SEQUENCE analysis_pub_analysis_pub_id_seq OWNED BY analysis_pub.analysis_pub_id;
  2953. --
  2954. -- Name: analysis_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  2955. --
  2956. CREATE TABLE analysis_relationship (
  2957. analysis_relationship_id bigint NOT NULL,
  2958. subject_id bigint NOT NULL,
  2959. object_id bigint NOT NULL,
  2960. type_id bigint NOT NULL,
  2961. value text,
  2962. rank integer DEFAULT 0 NOT NULL
  2963. );
  2964. --
  2965. -- Name: COLUMN analysis_relationship.subject_id; Type: COMMENT; Schema: public; Owner: chado
  2966. --
  2967. COMMENT ON COLUMN analysis_relationship.subject_id IS 'analysis_relationship.subject_id i
  2968. s the subject of the subj-predicate-obj sentence.';
  2969. --
  2970. -- Name: COLUMN analysis_relationship.object_id; Type: COMMENT; Schema: public; Owner: chado
  2971. --
  2972. COMMENT ON COLUMN analysis_relationship.object_id IS 'analysis_relationship.object_id
  2973. is the object of the subj-predicate-obj sentence.';
  2974. --
  2975. -- Name: COLUMN analysis_relationship.type_id; Type: COMMENT; Schema: public; Owner: chado
  2976. --
  2977. COMMENT ON COLUMN analysis_relationship.type_id IS 'analysis_relationship.type_id
  2978. is relationship type between subject and object. This is a cvterm, typically
  2979. from the OBO relationship ontology, although other relationship types are allowed.';
  2980. --
  2981. -- Name: COLUMN analysis_relationship.value; Type: COMMENT; Schema: public; Owner: chado
  2982. --
  2983. COMMENT ON COLUMN analysis_relationship.value IS 'analysis_relationship.value
  2984. is for additional notes or comments.';
  2985. --
  2986. -- Name: COLUMN analysis_relationship.rank; Type: COMMENT; Schema: public; Owner: chado
  2987. --
  2988. COMMENT ON COLUMN analysis_relationship.rank IS 'analysis_relationship.rank is
  2989. the ordering of subject analysiss with respect to the object analysis may be
  2990. important where rank is used to order these; starts from zero.';
  2991. --
  2992. -- Name: analysis_relationship_analysis_relationship_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  2993. --
  2994. CREATE SEQUENCE analysis_relationship_analysis_relationship_id_seq
  2995. START WITH 1
  2996. INCREMENT BY 1
  2997. NO MINVALUE
  2998. NO MAXVALUE
  2999. CACHE 1;
  3000. --
  3001. -- Name: analysis_relationship_analysis_relationship_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3002. --
  3003. ALTER SEQUENCE analysis_relationship_analysis_relationship_id_seq OWNED BY analysis_relationship.analysis_relationship_id;
  3004. --
  3005. -- Name: analysisfeature; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3006. --
  3007. ALTER TABLE analysisfeature
  3008. ALTER analysisfeature_id TYPE bigint,
  3009. ALTER feature_id TYPE bigint,
  3010. ALTER analysis_id TYPE bigint;
  3011. --
  3012. -- Name: analysisfeatureprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3013. --
  3014. ALTER TABLE analysisfeatureprop
  3015. ALTER analysisfeatureprop_id TYPE bigint,
  3016. ALTER analysisfeature_id TYPE bigint,
  3017. ALTER type_id TYPE bigint;
  3018. --
  3019. -- Name: analysisprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3020. --
  3021. ALTER TABLE analysisprop
  3022. ALTER analysisprop_id TYPE bigint,
  3023. ALTER analysis_id TYPE bigint,
  3024. ALTER type_id TYPE bigint;
  3025. --
  3026. -- Name: arraydesign; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3027. --
  3028. ALTER TABLE arraydesign
  3029. ALTER arraydesign_id TYPE bigint,
  3030. ALTER manufacturer_id TYPE bigint,
  3031. ALTER platformtype_id TYPE bigint,
  3032. ALTER substratetype_id TYPE bigint,
  3033. ALTER protocol_id TYPE bigint,
  3034. ALTER dbxref_id TYPE bigint;
  3035. --
  3036. -- Name: arraydesignprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3037. --
  3038. ALTER TABLE arraydesignprop
  3039. ALTER arraydesignprop_id TYPE bigint,
  3040. ALTER arraydesign_id TYPE bigint,
  3041. ALTER type_id TYPE bigint;
  3042. --
  3043. -- Name: assay; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3044. --
  3045. ALTER TABLE assay
  3046. ALTER assay_id TYPE bigint,
  3047. ALTER arraydesign_id TYPE bigint,
  3048. ALTER protocol_id TYPE bigint,
  3049. ALTER operator_id TYPE bigint,
  3050. ALTER dbxref_id TYPE bigint;
  3051. --
  3052. -- Name: assay_biomaterial; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3053. --
  3054. ALTER TABLE assay_biomaterial
  3055. ALTER assay_biomaterial_id TYPE bigint,
  3056. ALTER assay_id TYPE bigint,
  3057. ALTER biomaterial_id TYPE bigint,
  3058. ALTER channel_id TYPE bigint;
  3059. --
  3060. -- Name: assay_project; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3061. --
  3062. ALTER TABLE assay_project
  3063. ALTER assay_project_id TYPE bigint,
  3064. ALTER assay_id TYPE bigint,
  3065. ALTER project_id TYPE bigint;
  3066. --
  3067. -- Name: assayprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3068. --
  3069. ALTER TABLE assayprop
  3070. ALTER assayprop_id TYPE bigint,
  3071. ALTER assay_id TYPE bigint,
  3072. ALTER type_id TYPE bigint;
  3073. --
  3074. -- Name: biomaterial; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3075. --
  3076. ALTER TABLE biomaterial
  3077. ALTER biomaterial_id TYPE bigint,
  3078. ALTER taxon_id TYPE bigint,
  3079. ALTER biosourceprovider_id TYPE bigint,
  3080. ALTER dbxref_id TYPE bigint;
  3081. --
  3082. -- Name: biomaterial_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3083. --
  3084. ALTER TABLE biomaterial_dbxref
  3085. ALTER biomaterial_dbxref_id TYPE bigint,
  3086. ALTER biomaterial_id TYPE bigint,
  3087. ALTER dbxref_id TYPE bigint;
  3088. --
  3089. -- Name: biomaterial_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3090. --
  3091. ALTER TABLE biomaterial_dbxref
  3092. ALTER biomaterial_dbxref_id TYPE bigint,
  3093. ALTER biomaterial_id TYPE bigint,
  3094. ALTER dbxref_id TYPE bigint;
  3095. --
  3096. -- Name: biomaterial_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3097. --
  3098. ALTER TABLE biomaterial_relationship
  3099. ALTER biomaterial_relationship_id TYPE bigint,
  3100. ALTER subject_id TYPE bigint,
  3101. ALTER type_id TYPE bigint,
  3102. ALTER object_id TYPE bigint;
  3103. --
  3104. -- Name: biomaterial_treatment; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3105. --
  3106. ALTER TABLE biomaterial_treatment
  3107. ALTER biomaterial_treatment_id TYPE bigint,
  3108. ALTER biomaterial_id TYPE bigint,
  3109. ALTER treatment_id TYPE bigint,
  3110. ALTER unittype_id TYPE bigint;
  3111. --
  3112. -- Name: biomaterialprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3113. --
  3114. ALTER TABLE biomaterialprop
  3115. ALTER biomaterialprop_id TYPE bigint,
  3116. ALTER biomaterial_id TYPE bigint,
  3117. ALTER type_id TYPE bigint;
  3118. --
  3119. -- Name: cell_line; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3120. --
  3121. ALTER TABLE cell_line
  3122. ALTER cell_line_id TYPE bigint,
  3123. ALTER organism_id TYPE bigint;
  3124. --
  3125. -- Name: cell_line_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3126. --
  3127. ALTER TABLE cell_line_cvterm
  3128. ALTER cell_line_cvterm_id TYPE bigint,
  3129. ALTER cell_line_id TYPE bigint,
  3130. ALTER cvterm_id TYPE bigint,
  3131. ALTER pub_id TYPE bigint;
  3132. --
  3133. -- Name: cell_line_cvtermprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3134. --
  3135. ALTER TABLE cell_line_cvtermprop
  3136. ALTER cell_line_cvtermprop_id TYPE bigint,
  3137. ALTER cell_line_cvterm_id TYPE bigint,
  3138. ALTER type_id TYPE bigint;
  3139. --
  3140. -- Name: cell_line_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3141. --
  3142. ALTER TABLE cell_line_dbxref
  3143. ALTER cell_line_dbxref_id TYPE bigint,
  3144. ALTER cell_line_id TYPE bigint,
  3145. ALTER dbxref_id TYPE bigint;
  3146. --
  3147. -- Name: cell_line_feature; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3148. --
  3149. ALTER TABLE cell_line_feature
  3150. ALTER cell_line_feature_id TYPE bigint,
  3151. ALTER cell_line_id TYPE bigint,
  3152. ALTER feature_id TYPE bigint,
  3153. ALTER pub_id TYPE bigint;
  3154. --
  3155. -- Name: cell_line_library; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3156. --
  3157. ALTER TABLE cell_line_library
  3158. ALTER cell_line_library_id TYPE bigint,
  3159. ALTER cell_line_id TYPE bigint,
  3160. ALTER library_id TYPE bigint,
  3161. ALTER pub_id TYPE bigint;
  3162. --
  3163. -- Name: cell_line_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3164. --
  3165. ALTER TABLE cell_line_pub
  3166. ALTER cell_line_pub_id TYPE bigint,
  3167. ALTER cell_line_id TYPE bigint,
  3168. ALTER pub_id TYPE bigint;
  3169. --
  3170. -- Name: cell_line_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3171. --
  3172. ALTER TABLE cell_line_relationship
  3173. ALTER cell_line_relationship_id TYPE bigint,
  3174. ALTER subject_id TYPE bigint,
  3175. ALTER object_id TYPE bigint,
  3176. ALTER type_id TYPE bigint;
  3177. --
  3178. -- Name: cell_line_synonym; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3179. --
  3180. ALTER TABLE cell_line_synonym
  3181. ALTER cell_line_synonym_id TYPE bigint,
  3182. ALTER cell_line_id TYPE bigint,
  3183. ALTER synonym_id TYPE bigint,
  3184. ALTER pub_id TYPE bigint;
  3185. --
  3186. -- Name: cell_lineprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3187. --
  3188. ALTER TABLE cell_lineprop
  3189. ALTER cell_lineprop_id TYPE bigint,
  3190. ALTER cell_line_id TYPE bigint,
  3191. ALTER type_id TYPE bigint;
  3192. --
  3193. -- Name: cell_lineprop_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3194. --
  3195. ALTER TABLE cell_lineprop_pub
  3196. ALTER cell_lineprop_pub_id TYPE bigint,
  3197. ALTER cell_lineprop_id TYPE bigint,
  3198. ALTER pub_id TYPE bigint;
  3199. --
  3200. -- Name: chadoprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3201. --
  3202. ALTER TABLE chadoprop
  3203. ALTER chadoprop_id TYPE bigint,
  3204. ALTER type_id TYPE bigint;
  3205. --
  3206. -- Name: channel; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3207. --
  3208. ALTER TABLE channel ALTER channel_id TYPE bigint;
  3209. --
  3210. -- Name: contact; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3211. --
  3212. ALTER TABLE contact
  3213. ALTER contact_id TYPE bigint,
  3214. ALTER type_id TYPE bigint;
  3215. --
  3216. -- Name: contact_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3217. --
  3218. ALTER TABLE contact_relationship
  3219. ALTER contact_relationship_id TYPE bigint,
  3220. ALTER type_id TYPE bigint,
  3221. ALTER subject_id TYPE bigint,
  3222. ALTER object_id TYPE bigint;
  3223. --
  3224. -- Name: contactprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3225. --
  3226. CREATE TABLE contactprop (
  3227. contactprop_id bigint NOT NULL,
  3228. contact_id bigint NOT NULL,
  3229. type_id bigint NOT NULL,
  3230. value text,
  3231. rank integer DEFAULT 0 NOT NULL
  3232. );
  3233. --
  3234. -- Name: TABLE contactprop; Type: COMMENT; Schema: public; Owner: chado
  3235. --
  3236. COMMENT ON TABLE contactprop IS 'A contact can have any number of slot-value property
  3237. tags attached to it. This is an alternative to hardcoding a list of columns in the
  3238. relational schema, and is completely extensible.';
  3239. --
  3240. -- Name: contactprop_contactprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  3241. --
  3242. CREATE SEQUENCE contactprop_contactprop_id_seq
  3243. START WITH 1
  3244. INCREMENT BY 1
  3245. NO MINVALUE
  3246. NO MAXVALUE
  3247. CACHE 1;
  3248. --
  3249. -- Name: contactprop_contactprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3250. --
  3251. ALTER SEQUENCE contactprop_contactprop_id_seq OWNED BY contactprop.contactprop_id;
  3252. --
  3253. -- Name: control; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3254. --
  3255. ALTER TABLE control
  3256. ALTER control_id TYPE bigint,
  3257. ALTER type_id TYPE bigint,
  3258. ALTER assay_id TYPE bigint,
  3259. ALTER tableinfo_id TYPE bigint;
  3260. --
  3261. -- Name: cvterm_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3262. --
  3263. ALTER TABLE cvterm_relationship
  3264. ALTER cvterm_relationship_id TYPE bigint,
  3265. ALTER type_id TYPE bigint,
  3266. ALTER subject_id TYPE bigint,
  3267. ALTER object_id TYPE bigint;
  3268. --
  3269. -- Name: cvprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3270. --
  3271. ALTER TABLE cvprop
  3272. ALTER cvprop_id TYPE bigint,
  3273. ALTER cv_id TYPE bigint,
  3274. ALTER type_id TYPE bigint;
  3275. --
  3276. -- Name: cvterm_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3277. --
  3278. ALTER TABLE cvterm_dbxref
  3279. ALTER cvterm_dbxref_id TYPE bigint,
  3280. ALTER cvterm_id TYPE bigint,
  3281. ALTER dbxref_id TYPE bigint;
  3282. --
  3283. -- Name: cvtermprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3284. --
  3285. ALTER TABLE cvtermprop
  3286. ALTER cvtermprop_id TYPE bigint,
  3287. ALTER cvterm_id TYPE bigint,
  3288. ALTER type_id TYPE bigint;
  3289. --
  3290. -- Name: cvtermsynonym; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3291. --
  3292. ALTER TABLE cvtermsynonym
  3293. ALTER cvtermsynonym_id TYPE bigint,
  3294. ALTER cvterm_id TYPE bigint,
  3295. ALTER type_id TYPE bigint;
  3296. --
  3297. -- Name: dbprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3298. --
  3299. CREATE TABLE dbprop (
  3300. dbprop_id bigint NOT NULL,
  3301. db_id bigint NOT NULL,
  3302. type_id bigint NOT NULL,
  3303. value text,
  3304. rank integer DEFAULT 0 NOT NULL
  3305. );
  3306. --
  3307. -- Name: TABLE dbprop; Type: COMMENT; Schema: public; Owner: chado
  3308. --
  3309. COMMENT ON TABLE dbprop IS 'An external database can have any number of
  3310. slot-value property tags attached to it. This is an alternative to
  3311. hardcoding a list of columns in the relational schema, and is
  3312. completely extensible. There is a unique constraint, dbprop_c1, for
  3313. the combination of db_id, rank, and type_id. Multivalued property-value pairs must be differentiated by rank.';
  3314. --
  3315. -- Name: dbprop_dbprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  3316. --
  3317. CREATE SEQUENCE dbprop_dbprop_id_seq
  3318. START WITH 1
  3319. INCREMENT BY 1
  3320. NO MINVALUE
  3321. NO MAXVALUE
  3322. CACHE 1;
  3323. --
  3324. -- Name: dbprop_dbprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3325. --
  3326. ALTER SEQUENCE dbprop_dbprop_id_seq OWNED BY dbprop.dbprop_id;
  3327. --
  3328. -- Name: dbxrefprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3329. --
  3330. ALTER TABLE dbxrefprop
  3331. ALTER dbxrefprop_id TYPE bigint,
  3332. ALTER dbxref_id TYPE bigint,
  3333. ALTER type_id TYPE bigint;
  3334. --
  3335. -- Name: eimage; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3336. --
  3337. ALTER TABLE eimage ALTER eimage_id TYPE bigint;
  3338. --
  3339. -- Name: element; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3340. --
  3341. ALTER TABLE element
  3342. ALTER element_id TYPE bigint,
  3343. ALTER feature_id TYPE bigint,
  3344. ALTER arraydesign_id TYPE bigint,
  3345. ALTER type_id TYPE bigint,
  3346. ALTER dbxref_id TYPE bigint;
  3347. --
  3348. -- Name: element_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3349. --
  3350. ALTER TABLE element_relationship
  3351. ALTER element_relationship_id TYPE bigint,
  3352. ALTER subject_id TYPE bigint,
  3353. ALTER type_id TYPE bigint,
  3354. ALTER object_id TYPE bigint;
  3355. --
  3356. -- Name: elementresult; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3357. --
  3358. ALTER TABLE elementresult
  3359. ALTER elementresult_id TYPE bigint,
  3360. ALTER element_id TYPE bigint,
  3361. ALTER quantification_id TYPE bigint;
  3362. --
  3363. -- Name: elementresult_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3364. --
  3365. ALTER TABLE elementresult_relationship
  3366. ALTER elementresult_relationship_id TYPE bigint,
  3367. ALTER subject_id TYPE bigint,
  3368. ALTER type_id TYPE bigint,
  3369. ALTER object_id TYPE bigint;
  3370. --
  3371. -- Name: environment; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3372. --
  3373. ALTER TABLE environment ALTER environment_id TYPE bigint;
  3374. --
  3375. -- Name: environment_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3376. --
  3377. ALTER TABLE environment_cvterm
  3378. ALTER environment_cvterm_id TYPE bigint,
  3379. ALTER environment_id TYPE bigint,
  3380. ALTER cvterm_id TYPE bigint;
  3381. --
  3382. -- Name: expression; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3383. --
  3384. ALTER TABLE expression ALTER expression_id TYPE bigint;
  3385. --
  3386. -- Name: expression_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3387. --
  3388. ALTER TABLE expression_cvterm
  3389. ALTER expression_cvterm_id TYPE bigint,
  3390. ALTER expression_id TYPE bigint,
  3391. ALTER cvterm_id TYPE bigint,
  3392. ALTER cvterm_type_id TYPE bigint;
  3393. --
  3394. -- Name: expression_cvtermprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3395. --
  3396. ALTER TABLE expression_cvtermprop
  3397. ALTER expression_cvtermprop_id TYPE bigint,
  3398. ALTER expression_cvterm_id type bigint,
  3399. ALTER type_id TYPE bigint;
  3400. --
  3401. -- Name: expression_image; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3402. --
  3403. ALTER TABLE expression_image
  3404. ALTER expression_image_id TYPE bigint,
  3405. ALTER expression_id TYPE bigint,
  3406. ALTER eimage_id TYPE bigint;
  3407. --
  3408. -- Name: expression_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3409. --
  3410. ALTER TABLE expression_pub
  3411. ALTER expression_pub_id TYPE bigint,
  3412. ALTER expression_id TYPE bigint,
  3413. ALTER pub_id TYPE bigint;
  3414. --
  3415. -- Name: expressionprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3416. --
  3417. ALTER TABLE expressionprop
  3418. ALTER expressionprop_id TYPE bigint,
  3419. ALTER expression_id TYPE bigint,
  3420. ALTER type_id TYPE bigint;
  3421. --
  3422. -- Name: feature_contact; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3423. --
  3424. CREATE TABLE feature_contact (
  3425. feature_contact_id bigint NOT NULL,
  3426. feature_id bigint NOT NULL,
  3427. contact_id bigint NOT NULL
  3428. );
  3429. --
  3430. -- Name: TABLE feature_contact; Type: COMMENT; Schema: public; Owner: chado
  3431. --
  3432. COMMENT ON TABLE feature_contact IS 'Links contact(s) with a feature. Used to indicate a particular
  3433. person or organization responsible for discovery or that can provide more information on a particular feature.';
  3434. --
  3435. -- Name: feature_contact_feature_contact_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  3436. --
  3437. CREATE SEQUENCE feature_contact_feature_contact_id_seq
  3438. START WITH 1
  3439. INCREMENT BY 1
  3440. NO MINVALUE
  3441. NO MAXVALUE
  3442. CACHE 1;
  3443. --
  3444. -- Name: feature_contact_feature_contact_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3445. --
  3446. ALTER SEQUENCE feature_contact_feature_contact_id_seq OWNED BY feature_contact.feature_contact_id;
  3447. --
  3448. -- Name: feature_cvterm_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3449. --
  3450. ALTER TABLE feature_cvterm_dbxref
  3451. ALTER feature_cvterm_dbxref_id TYPE bigint,
  3452. ALTER feature_cvterm_id TYPE bigint,
  3453. ALTER dbxref_id TYPE bigint;
  3454. --
  3455. -- Name: feature_cvterm_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3456. --
  3457. ALTER TABLE feature_cvterm_pub
  3458. ALTER feature_cvterm_pub_id TYPE bigint,
  3459. ALTER feature_cvterm_id TYPE bigint,
  3460. ALTER pub_id TYPE bigint;
  3461. --
  3462. -- Name: feature_cvtermprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3463. --
  3464. ALTER TABLE feature_cvtermprop
  3465. ALTER feature_cvtermprop_id TYPE bigint,
  3466. ALTER feature_cvterm_id TYPE bigint,
  3467. ALTER type_id TYPE bigint;
  3468. --
  3469. -- Name: feature_expression; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3470. --
  3471. ALTER TABLE feature_expression
  3472. ALTER feature_expression_id TYPE bigint,
  3473. ALTER expression_id TYPE bigint,
  3474. ALTER feature_id TYPE bigint,
  3475. ALTER pub_id TYPE bigint;
  3476. --
  3477. -- Name: feature_expressionprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3478. --
  3479. ALTER TABLE feature_expressionprop
  3480. ALTER feature_expressionprop_id TYPE bigint,
  3481. ALTER feature_expression_id TYPE bigint,
  3482. ALTER type_id TYPE bigint;
  3483. --
  3484. -- Name: feature_genotype; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3485. --
  3486. ALTER TABLE feature_genotype
  3487. ALTER feature_genotype_id TYPE bigint,
  3488. ALTER feature_id TYPE bigint,
  3489. ALTER genotype_id TYPE bigint,
  3490. ALTER chromosome_id TYPE bigint,
  3491. ALTER cvterm_id TYPE bigint;
  3492. --
  3493. -- Name: feature_phenotype; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3494. --
  3495. ALTER TABLE feature_phenotype
  3496. ALTER feature_phenotype_id TYPE bigint,
  3497. ALTER feature_id TYPE bigint,
  3498. ALTER phenotype_id TYPE bigint;
  3499. --
  3500. -- Name: TABLE feature_phenotype; Type: COMMENT; Schema: public; Owner: chado
  3501. --
  3502. COMMENT ON TABLE feature_phenotype IS 'Linking table between features and phenotypes.';
  3503. --
  3504. -- Name: feature_pubprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3505. --
  3506. ALTER TABLE feature_pubprop
  3507. ALTER feature_pubprop_id TYPE bigint,
  3508. ALTER feature_pub_id TYPE bigint,
  3509. ALTER type_id TYPE bigint ;
  3510. --
  3511. -- Name: feature_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3512. --
  3513. ALTER TABLE feature_relationship
  3514. ALTER feature_relationship_id TYPE bigint,
  3515. ALTER subject_id TYPE bigint,
  3516. ALTER object_id TYPE bigint,
  3517. ALTER type_id TYPE bigint;
  3518. --
  3519. -- Name: feature_relationship_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3520. --
  3521. ALTER TABLE feature_relationship_pub
  3522. ALTER feature_relationship_pub_id TYPE bigint,
  3523. ALTER feature_relationship_id TYPE bigint,
  3524. ALTER pub_id TYPE bigint;
  3525. --
  3526. -- Name: feature_relationshipprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3527. --
  3528. ALTER TABLE feature_relationshipprop
  3529. ALTER feature_relationshipprop_id TYPE bigint,
  3530. ALTER feature_relationship_id TYPE bigint,
  3531. ALTER type_id TYPE bigint;
  3532. --
  3533. -- Name: feature_relationshipprop_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3534. --
  3535. ALTER TABLE feature_relationshipprop_pub
  3536. ALTER feature_relationshipprop_pub_id TYPE bigint,
  3537. ALTER feature_relationshipprop_id TYPE bigint,
  3538. ALTER pub_id TYPE bigint;
  3539. --
  3540. -- Name: featureloc_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3541. --
  3542. ALTER TABLE featureloc_pub
  3543. ALTER featureloc_pub_id TYPE bigint,
  3544. ALTER featureloc_id TYPE bigint,
  3545. ALTER pub_id TYPE bigint;
  3546. --
  3547. -- Name: featuremap; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3548. --
  3549. ALTER TABLE featuremap
  3550. ALTER featuremap_id TYPE bigint,
  3551. ALTER unittype_id TYPE bigint;
  3552. --
  3553. -- Name: featuremap_contact; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3554. --
  3555. CREATE TABLE featuremap_contact (
  3556. featuremap_contact_id bigint NOT NULL,
  3557. featuremap_id bigint NOT NULL,
  3558. contact_id bigint NOT NULL
  3559. );
  3560. --
  3561. -- Name: TABLE featuremap_contact; Type: COMMENT; Schema: public; Owner: chado
  3562. --
  3563. COMMENT ON TABLE featuremap_contact IS 'Links contact(s) with a featuremap. Used to
  3564. indicate a particular person or organization responsible for constrution of or
  3565. that can provide more information on a particular featuremap.';
  3566. --
  3567. -- Name: featuremap_contact_featuremap_contact_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  3568. --
  3569. CREATE SEQUENCE featuremap_contact_featuremap_contact_id_seq
  3570. START WITH 1
  3571. INCREMENT BY 1
  3572. NO MINVALUE
  3573. NO MAXVALUE
  3574. CACHE 1;
  3575. --
  3576. -- Name: featuremap_contact_featuremap_contact_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3577. --
  3578. ALTER SEQUENCE featuremap_contact_featuremap_contact_id_seq OWNED BY featuremap_contact.featuremap_contact_id;
  3579. --
  3580. -- Name: featuremap_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3581. --
  3582. CREATE TABLE featuremap_dbxref (
  3583. featuremap_dbxref_id bigint NOT NULL,
  3584. featuremap_id bigint NOT NULL,
  3585. dbxref_id bigint NOT NULL,
  3586. is_current boolean DEFAULT true NOT NULL
  3587. );
  3588. --
  3589. -- Name: featuremap_dbxref_featuremap_dbxref_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  3590. --
  3591. CREATE SEQUENCE featuremap_dbxref_featuremap_dbxref_id_seq
  3592. START WITH 1
  3593. INCREMENT BY 1
  3594. NO MINVALUE
  3595. NO MAXVALUE
  3596. CACHE 1;
  3597. --
  3598. -- Name: featuremap_dbxref_featuremap_dbxref_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3599. --
  3600. ALTER SEQUENCE featuremap_dbxref_featuremap_dbxref_id_seq OWNED BY featuremap_dbxref.featuremap_dbxref_id;
  3601. --
  3602. -- Name: featuremap_organism; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3603. --
  3604. CREATE TABLE featuremap_organism (
  3605. featuremap_organism_id bigint NOT NULL,
  3606. featuremap_id bigint NOT NULL,
  3607. organism_id bigint NOT NULL
  3608. );
  3609. --
  3610. -- Name: TABLE featuremap_organism; Type: COMMENT; Schema: public; Owner: chado
  3611. --
  3612. COMMENT ON TABLE featuremap_organism IS 'Links a featuremap to the organism(s) with which it is associated.';
  3613. --
  3614. -- Name: featuremap_organism_featuremap_organism_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  3615. --
  3616. CREATE SEQUENCE featuremap_organism_featuremap_organism_id_seq
  3617. START WITH 1
  3618. INCREMENT BY 1
  3619. NO MINVALUE
  3620. NO MAXVALUE
  3621. CACHE 1;
  3622. --
  3623. -- Name: featuremap_organism_featuremap_organism_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3624. --
  3625. ALTER SEQUENCE featuremap_organism_featuremap_organism_id_seq OWNED BY featuremap_organism.featuremap_organism_id;
  3626. --
  3627. -- Name: featuremap_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3628. --
  3629. ALTER TABLE featuremap_pub
  3630. ALTER featuremap_pub_id TYPE bigint,
  3631. ALTER featuremap_id TYPE bigint,
  3632. ALTER pub_id TYPE bigint;
  3633. --
  3634. -- Name: featuremapprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3635. --
  3636. CREATE TABLE featuremapprop (
  3637. featuremapprop_id bigint NOT NULL,
  3638. featuremap_id bigint NOT NULL,
  3639. type_id bigint NOT NULL,
  3640. value text,
  3641. rank integer DEFAULT 0 NOT NULL
  3642. );
  3643. --
  3644. -- Name: TABLE featuremapprop; Type: COMMENT; Schema: public; Owner: chado
  3645. --
  3646. COMMENT ON TABLE featuremapprop IS 'A featuremap can have any number of slot-value property
  3647. tags attached to it. This is an alternative to hardcoding a list of columns in the
  3648. relational schema, and is completely extensible.';
  3649. --
  3650. -- Name: featuremapprop_featuremapprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  3651. --
  3652. CREATE SEQUENCE featuremapprop_featuremapprop_id_seq
  3653. START WITH 1
  3654. INCREMENT BY 1
  3655. NO MINVALUE
  3656. NO MAXVALUE
  3657. CACHE 1;
  3658. --
  3659. -- Name: featuremapprop_featuremapprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3660. --
  3661. ALTER SEQUENCE featuremapprop_featuremapprop_id_seq OWNED BY featuremapprop.featuremapprop_id;
  3662. --
  3663. -- Name: featurepos; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3664. --
  3665. ALTER TABLE featurepos
  3666. ALTER featurepos_id TYPE bigint,
  3667. ALTER featuremap_id TYPE bigint,
  3668. ALTER featuremap_id DROP DEFAULT,
  3669. ALTER feature_id TYPE bigint,
  3670. ALTER map_feature_id TYPE bigint;
  3671. DROP SEQUENCE featurepos_featuremap_id_seq;
  3672. --
  3673. -- Name: featureposprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3674. --
  3675. CREATE TABLE featureposprop (
  3676. featureposprop_id bigint NOT NULL,
  3677. featurepos_id bigint NOT NULL,
  3678. type_id bigint NOT NULL,
  3679. value text,
  3680. rank integer DEFAULT 0 NOT NULL
  3681. );
  3682. --
  3683. -- Name: TABLE featureposprop; Type: COMMENT; Schema: public; Owner: chado
  3684. --
  3685. COMMENT ON TABLE featureposprop IS 'Property or attribute of a featurepos record.';
  3686. --
  3687. -- Name: featureposprop_featureposprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  3688. --
  3689. CREATE SEQUENCE featureposprop_featureposprop_id_seq
  3690. START WITH 1
  3691. INCREMENT BY 1
  3692. NO MINVALUE
  3693. NO MAXVALUE
  3694. CACHE 1;
  3695. --
  3696. -- Name: featureposprop_featureposprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3697. --
  3698. ALTER SEQUENCE featureposprop_featureposprop_id_seq OWNED BY featureposprop.featureposprop_id;
  3699. --
  3700. -- Name: featureprop_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3701. --
  3702. ALTER TABLE featureprop_pub
  3703. ALTER featureprop_pub_id TYPE bigint,
  3704. ALTER featureprop_id TYPE bigint,
  3705. ALTER pub_id TYPE bigint;
  3706. --
  3707. -- Name: featurerange; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3708. --
  3709. ALTER TABLE featurerange
  3710. ALTER featurerange_id TYPE bigint,
  3711. ALTER featuremap_id TYPE bigint,
  3712. ALTER feature_id TYPE bigint,
  3713. ALTER leftstartf_id TYPE bigint,
  3714. ALTER leftendf_id TYPE bigint,
  3715. ALTER rightstartf_id TYPE bigint,
  3716. ALTER rightendf_id TYPE bigint;
  3717. --
  3718. -- Name: genotype; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3719. --
  3720. ALTER TABLE genotype
  3721. ALTER genotype_id TYPE bigint,
  3722. ALTER description TYPE text,
  3723. ALTER type_id TYPE bigint;
  3724. --
  3725. -- Name: genotypeprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3726. --
  3727. ALTER TABLE genotypeprop
  3728. ALTER genotypeprop_id TYPE bigint,
  3729. ALTER genotype_id TYPE bigint,
  3730. ALTER type_id TYPE bigint;
  3731. --
  3732. -- Name: library; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3733. --
  3734. ALTER TABLE library
  3735. ALTER library_id TYPE bigint,
  3736. ALTER organism_id TYPE bigint,
  3737. ALTER type_id TYPE bigint;
  3738. --
  3739. -- Name: COLUMN library.type_id; Type: COMMENT; Schema: public; Owner: chado
  3740. --
  3741. COMMENT ON COLUMN library.type_id IS 'The type_id foreign key links to a controlled vocabulary of library types. Examples of this would be: "cDNA_library" or "genomic_library"';
  3742. --
  3743. -- Name: library_contact; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3744. --
  3745. CREATE TABLE library_contact (
  3746. library_contact_id bigint NOT NULL,
  3747. library_id bigint NOT NULL,
  3748. contact_id bigint NOT NULL
  3749. );
  3750. --
  3751. -- Name: TABLE library_contact; Type: COMMENT; Schema: public; Owner: chado
  3752. --
  3753. COMMENT ON TABLE library_contact IS 'Links contact(s) with a library. Used to indicate a particular person or organization responsible for creation of or that can provide more information on a particular library.';
  3754. --
  3755. -- Name: library_contact_library_contact_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  3756. --
  3757. CREATE SEQUENCE library_contact_library_contact_id_seq
  3758. START WITH 1
  3759. INCREMENT BY 1
  3760. NO MINVALUE
  3761. NO MAXVALUE
  3762. CACHE 1;
  3763. --
  3764. -- Name: library_contact_library_contact_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3765. --
  3766. ALTER SEQUENCE library_contact_library_contact_id_seq OWNED BY library_contact.library_contact_id;
  3767. --
  3768. -- Name: library_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3769. --
  3770. ALTER TABLE library_cvterm
  3771. ALTER library_cvterm_id TYPE bigint,
  3772. ALTER library_id TYPE bigint,
  3773. ALTER cvterm_id TYPE bigint,
  3774. ALTER pub_id TYPE bigint;
  3775. --
  3776. -- Name: library_dbxref; Type: TABLE; Schema: public; Owner: -; Tablespace:
  3777. --
  3778. ALTER TABLE library_dbxref
  3779. ALTER library_dbxref_id TYPE bigint,
  3780. ALTER library_id TYPE bigint,
  3781. ALTER dbxref_id TYPE bigint;
  3782. --
  3783. -- Name: TABLE library_dbxref; Type: COMMENT; Schema: public; Owner: chado
  3784. --
  3785. COMMENT ON TABLE library_dbxref IS 'Links a library to dbxrefs.';
  3786. --
  3787. -- Name: library_expression; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3788. --
  3789. CREATE TABLE library_expression (
  3790. library_expression_id bigint NOT NULL,
  3791. library_id bigint NOT NULL,
  3792. expression_id bigint NOT NULL,
  3793. pub_id bigint NOT NULL
  3794. );
  3795. --
  3796. -- Name: TABLE library_expression; Type: COMMENT; Schema: public; Owner: chado
  3797. --
  3798. COMMENT ON TABLE library_expression IS 'Links a library to expression statements.';
  3799. --
  3800. -- Name: library_expression_library_expression_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  3801. --
  3802. CREATE SEQUENCE library_expression_library_expression_id_seq
  3803. START WITH 1
  3804. INCREMENT BY 1
  3805. NO MINVALUE
  3806. NO MAXVALUE
  3807. CACHE 1;
  3808. --
  3809. -- Name: library_expression_library_expression_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3810. --
  3811. ALTER SEQUENCE library_expression_library_expression_id_seq OWNED BY library_expression.library_expression_id;
  3812. --
  3813. -- Name: library_expressionprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3814. --
  3815. CREATE TABLE library_expressionprop (
  3816. library_expressionprop_id bigint NOT NULL,
  3817. library_expression_id bigint NOT NULL,
  3818. type_id bigint NOT NULL,
  3819. value text,
  3820. rank integer DEFAULT 0 NOT NULL
  3821. );
  3822. --
  3823. -- Name: TABLE library_expressionprop; Type: COMMENT; Schema: public; Owner: chado
  3824. --
  3825. COMMENT ON TABLE library_expressionprop IS 'Attributes of a library_expression relationship.';
  3826. --
  3827. -- Name: library_expressionprop_library_expressionprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  3828. --
  3829. CREATE SEQUENCE library_expressionprop_library_expressionprop_id_seq
  3830. START WITH 1
  3831. INCREMENT BY 1
  3832. NO MINVALUE
  3833. NO MAXVALUE
  3834. CACHE 1;
  3835. --
  3836. -- Name: library_expressionprop_library_expressionprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3837. --
  3838. ALTER SEQUENCE library_expressionprop_library_expressionprop_id_seq OWNED BY library_expressionprop.library_expressionprop_id;
  3839. --
  3840. -- Name: library_feature; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3841. --
  3842. ALTER TABLE library_feature
  3843. ALTER library_feature_id TYPE bigint,
  3844. ALTER library_id TYPE bigint,
  3845. ALTER feature_id TYPE bigint;
  3846. --
  3847. -- Name: library_featureprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3848. --
  3849. CREATE TABLE library_featureprop (
  3850. library_featureprop_id bigint NOT NULL,
  3851. library_feature_id bigint NOT NULL,
  3852. type_id bigint NOT NULL,
  3853. value text,
  3854. rank integer DEFAULT 0 NOT NULL
  3855. );
  3856. --
  3857. -- Name: TABLE library_featureprop; Type: COMMENT; Schema: public; Owner: chado
  3858. --
  3859. COMMENT ON TABLE library_featureprop IS 'Attributes of a library_feature relationship.';
  3860. --
  3861. -- Name: library_featureprop_library_featureprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  3862. --
  3863. CREATE SEQUENCE library_featureprop_library_featureprop_id_seq
  3864. START WITH 1
  3865. INCREMENT BY 1
  3866. NO MINVALUE
  3867. NO MAXVALUE
  3868. CACHE 1;
  3869. --
  3870. -- Name: library_featureprop_library_featureprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3871. --
  3872. ALTER SEQUENCE library_featureprop_library_featureprop_id_seq OWNED BY library_featureprop.library_featureprop_id;
  3873. --
  3874. -- Name: library_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3875. --
  3876. ALTER TABLE library_pub
  3877. ALTER library_pub_id TYPE bigint,
  3878. ALTER library_id TYPE bigint,
  3879. ALTER pub_id TYPE bigint;
  3880. --
  3881. -- Name: TABLE library_pub; Type: COMMENT; Schema: public; Owner: chado
  3882. --
  3883. COMMENT ON TABLE library_pub IS 'Attribution for a library.';
  3884. --
  3885. -- Name: library_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3886. --
  3887. CREATE TABLE library_relationship (
  3888. library_relationship_id bigint NOT NULL,
  3889. subject_id bigint NOT NULL,
  3890. object_id bigint NOT NULL,
  3891. type_id bigint NOT NULL
  3892. );
  3893. --
  3894. -- Name: TABLE library_relationship; Type: COMMENT; Schema: public; Owner: chado
  3895. --
  3896. COMMENT ON TABLE library_relationship IS 'Relationships between libraries.';
  3897. --
  3898. -- Name: library_relationship_library_relationship_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  3899. --
  3900. CREATE SEQUENCE library_relationship_library_relationship_id_seq
  3901. START WITH 1
  3902. INCREMENT BY 1
  3903. NO MINVALUE
  3904. NO MAXVALUE
  3905. CACHE 1;
  3906. --
  3907. -- Name: library_relationship_library_relationship_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3908. --
  3909. ALTER SEQUENCE library_relationship_library_relationship_id_seq OWNED BY library_relationship.library_relationship_id;
  3910. --
  3911. -- Name: library_relationship_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3912. --
  3913. CREATE TABLE library_relationship_pub (
  3914. library_relationship_pub_id bigint NOT NULL,
  3915. library_relationship_id bigint NOT NULL,
  3916. pub_id bigint NOT NULL
  3917. );
  3918. --
  3919. -- Name: TABLE library_relationship_pub; Type: COMMENT; Schema: public; Owner: chado
  3920. --
  3921. COMMENT ON TABLE library_relationship_pub IS 'Provenance of library_relationship.';
  3922. --
  3923. -- Name: library_relationship_pub_library_relationship_pub_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  3924. --
  3925. CREATE SEQUENCE library_relationship_pub_library_relationship_pub_id_seq
  3926. START WITH 1
  3927. INCREMENT BY 1
  3928. NO MINVALUE
  3929. NO MAXVALUE
  3930. CACHE 1;
  3931. --
  3932. -- Name: library_relationship_pub_library_relationship_pub_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  3933. --
  3934. ALTER SEQUENCE library_relationship_pub_library_relationship_pub_id_seq OWNED BY library_relationship_pub.library_relationship_pub_id;
  3935. --
  3936. -- Name: library_synonym; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3937. --
  3938. ALTER TABLE library_synonym
  3939. ALTER library_synonym_id TYPE bigint,
  3940. ALTER synonym_id TYPE bigint,
  3941. ALTER library_id TYPE bigint,
  3942. ALTER pub_id TYPE bigint;
  3943. --
  3944. -- Name: TABLE library_synonym; Type: COMMENT; Schema: public; Owner: chado
  3945. --
  3946. COMMENT ON TABLE library_synonym IS 'Linking table between library and synonym.';
  3947. --
  3948. -- Name: libraryprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3949. --
  3950. ALTER TABLE libraryprop
  3951. ALTER libraryprop_id TYPE bigint,
  3952. ALTER library_id TYPE bigint,
  3953. ALTER type_id TYPE bigint;
  3954. --
  3955. -- Name: TABLE libraryprop; Type: COMMENT; Schema: public; Owner: chado
  3956. --
  3957. COMMENT ON TABLE libraryprop IS 'Tag-value properties - follows standard chado model.';
  3958. --
  3959. -- Name: libraryprop_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3960. --
  3961. ALTER TABLE libraryprop_pub
  3962. ALTER libraryprop_pub_id TYPE bigint,
  3963. ALTER libraryprop_id TYPE bigint,
  3964. ALTER pub_id TYPE bigint;
  3965. --
  3966. -- Name: TABLE libraryprop_pub; Type: COMMENT; Schema: public; Owner: chado
  3967. --
  3968. COMMENT ON TABLE libraryprop_pub IS 'Attribution for libraryprop.';
  3969. --
  3970. -- Name: magedocumentation; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3971. --
  3972. ALTER TABLE magedocumentation
  3973. ALTER magedocumentation_id TYPE bigint,
  3974. ALTER mageml_id TYPE bigint,
  3975. ALTER tableinfo_id TYPE bigint;
  3976. --
  3977. -- Name: mageml; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3978. --
  3979. ALTER TABLE mageml ALTER mageml_id TYPE bigint;
  3980. --
  3981. -- Name: nd_experiment; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3982. --
  3983. ALTER TABLE nd_experiment
  3984. ALTER nd_experiment_id TYPE bigint,
  3985. ALTER nd_geolocation_id TYPE bigint,
  3986. ALTER type_id TYPE bigint;
  3987. --
  3988. -- Name: TABLE nd_experiment; Type: COMMENT; Schema: public; Owner: chado
  3989. --
  3990. COMMENT ON TABLE nd_experiment IS 'This is the core table for the natural diversity module,
  3991. representing each individual assay that is undertaken (this is usually *not* an
  3992. entire experiment). Each nd_experiment should give rise to a single genotype or
  3993. phenotype and be described via 1 (or more) protocols. Collections of assays that
  3994. relate to each other should be linked to the same record in the project table.';
  3995. --
  3996. -- Name: nd_experiment_analysis; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  3997. --
  3998. CREATE TABLE nd_experiment_analysis (
  3999. nd_experiment_analysis_id bigint NOT NULL,
  4000. nd_experiment_id bigint NOT NULL,
  4001. analysis_id bigint NOT NULL,
  4002. type_id bigint
  4003. );
  4004. --
  4005. -- Name: TABLE nd_experiment_analysis; Type: COMMENT; Schema: public; Owner: chado
  4006. --
  4007. COMMENT ON TABLE nd_experiment_analysis IS 'An analysis that is used in an experiment';
  4008. --
  4009. -- Name: nd_experiment_analysis_nd_experiment_analysis_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4010. --
  4011. CREATE SEQUENCE nd_experiment_analysis_nd_experiment_analysis_id_seq
  4012. START WITH 1
  4013. INCREMENT BY 1
  4014. NO MINVALUE
  4015. NO MAXVALUE
  4016. CACHE 1;
  4017. --
  4018. -- Name: nd_experiment_analysis_nd_experiment_analysis_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  4019. --
  4020. ALTER SEQUENCE nd_experiment_analysis_nd_experiment_analysis_id_seq OWNED BY nd_experiment_analysis.nd_experiment_analysis_id;
  4021. --
  4022. -- Name: nd_experiment_contact; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4023. --
  4024. ALTER TABLE nd_experiment_contact
  4025. ALTER nd_experiment_contact_id TYPE bigint,
  4026. ALTER nd_experiment_id TYPE bigint,
  4027. ALTER contact_id TYPE bigint;
  4028. --
  4029. -- Name: nd_experiment_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4030. --
  4031. ALTER TABLE nd_experiment_dbxref
  4032. ALTER nd_experiment_dbxref_id TYPE bigint,
  4033. ALTER nd_experiment_id TYPE bigint,
  4034. ALTER dbxref_id TYPE bigint;
  4035. --
  4036. -- Name: nd_experiment_genotype; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4037. --
  4038. ALTER TABLE nd_experiment_genotype
  4039. ALTER nd_experiment_genotype_id TYPE bigint,
  4040. ALTER nd_experiment_id TYPE bigint,
  4041. ALTER genotype_id TYPE bigint;
  4042. --
  4043. -- Name: nd_experiment_phenotype; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4044. --
  4045. ALTER TABLE nd_experiment_phenotype
  4046. ALTER nd_experiment_phenotype_id TYPE bigint,
  4047. ALTER nd_experiment_id TYPE bigint,
  4048. ALTER phenotype_id TYPE bigint;
  4049. --
  4050. -- Name: nd_experiment_project; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4051. --
  4052. ALTER TABLE nd_experiment_project
  4053. ALTER nd_experiment_project_id TYPE bigint,
  4054. ALTER project_id TYPE bigint,
  4055. ALTER nd_experiment_id TYPE bigint;
  4056. --
  4057. -- Name: TABLE nd_experiment_project; Type: COMMENT; Schema: public; Owner: chado
  4058. --
  4059. COMMENT ON TABLE nd_experiment_project IS 'Used to group together related nd_experiment records. All nd_experiments
  4060. should be linked to at least one project.';
  4061. --
  4062. -- Name: nd_experiment_protocol; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4063. --
  4064. ALTER TABLE nd_experiment_protocol
  4065. ALTER nd_experiment_protocol_id TYPE bigint,
  4066. ALTER nd_experiment_id TYPE bigint,
  4067. ALTER nd_protocol_id TYPE bigint;
  4068. --
  4069. -- Name: nd_experiment_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4070. --
  4071. ALTER TABLE nd_experiment_pub
  4072. ALTER nd_experiment_pub_id TYPE bigint,
  4073. ALTER nd_experiment_id TYPE bigint,
  4074. ALTER pub_id TYPE bigint;
  4075. --
  4076. -- Name: nd_experiment_stock; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4077. --
  4078. ALTER TABLE nd_experiment_stock
  4079. ALTER nd_experiment_stock_id TYPE bigint,
  4080. ALTER nd_experiment_id TYPE bigint,
  4081. ALTER stock_id TYPE bigint,
  4082. ALTER type_id TYPE bigint;
  4083. --
  4084. -- Name: nd_experiment_stock_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4085. --
  4086. ALTER TABLE nd_experiment_stock_dbxref
  4087. ALTER nd_experiment_stock_dbxref_id TYPE bigint,
  4088. ALTER nd_experiment_stock_id TYPE bigint,
  4089. ALTER dbxref_id TYPE bigint;
  4090. --
  4091. -- Name: nd_experiment_stockprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4092. --
  4093. ALTER TABLE nd_experiment_stockprop
  4094. ALTER nd_experiment_stockprop_id TYPE bigint,
  4095. ALTER nd_experiment_stock_id TYPE bigint,
  4096. ALTER type_id TYPE bigint;
  4097. --
  4098. -- Name: nd_experimentprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4099. --
  4100. ALTER TABLE nd_experimentprop
  4101. ALTER nd_experimentprop_id TYPE bigint,
  4102. ALTER nd_experiment_id TYPE bigint,
  4103. ALTER type_id TYPE bigint;
  4104. --
  4105. -- Name: TABLE nd_experimentprop; Type: COMMENT; Schema: public; Owner: chado
  4106. --
  4107. COMMENT ON TABLE nd_experimentprop IS 'An nd_experiment can have any number of
  4108. slot-value property tags attached to it. This is an alternative to
  4109. hardcoding a list of columns in the relational schema, and is
  4110. completely extensible. There is a unique constraint, stockprop_c1, for
  4111. the combination of stock_id, rank, and type_id. Multivalued property-value pairs must be differentiated by rank.';
  4112. --
  4113. -- Name: nd_geolocation; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4114. --
  4115. ALTER TABLE nd_geolocation
  4116. ALTER nd_geolocation_id TYPE bigint,
  4117. ALTER description TYPE text;
  4118. --
  4119. -- Name: nd_geolocationprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4120. --
  4121. ALTER TABLE nd_geolocationprop
  4122. ALTER nd_geolocationprop_id TYPE bigint,
  4123. ALTER nd_geolocation_id TYPE bigint,
  4124. ALTER type_id TYPE bigint;
  4125. --
  4126. -- Name: nd_protocol; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4127. --
  4128. ALTER TABLE nd_protocol
  4129. ALTER nd_protocol_id TYPE bigint,
  4130. ALTER type_id TYPE bigint;
  4131. --
  4132. -- Name: nd_protocol_reagent; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4133. --
  4134. ALTER TABLE nd_protocol_reagent
  4135. ALTER nd_protocol_reagent_id TYPE bigint,
  4136. ALTER nd_protocol_id TYPE bigint,
  4137. ALTER reagent_id TYPE bigint,
  4138. ALTER type_id TYPE bigint;
  4139. --
  4140. -- Name: nd_protocolprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4141. --
  4142. ALTER TABLE nd_protocolprop
  4143. ALTER nd_protocolprop_id TYPE bigint,
  4144. ALTER nd_protocol_id TYPE bigint,
  4145. ALTER type_id TYPE bigint;
  4146. --
  4147. -- Name: nd_reagent; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4148. --
  4149. ALTER TABLE nd_reagent
  4150. ALTER nd_reagent_id TYPE bigint,
  4151. ALTER type_id TYPE bigint ,
  4152. ALTER feature_id TYPE bigint;
  4153. --
  4154. -- Name: nd_reagent_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4155. --
  4156. ALTER TABLE nd_reagent_relationship
  4157. ALTER nd_reagent_relationship_id TYPE bigint,
  4158. ALTER subject_reagent_id TYPE bigint,
  4159. ALTER object_reagent_id TYPE bigint,
  4160. ALTER type_id TYPE bigint;
  4161. --
  4162. -- Name: nd_reagentprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4163. --
  4164. ALTER TABLE nd_reagentprop
  4165. ALTER nd_reagentprop_id TYPE bigint,
  4166. ALTER nd_reagent_id TYPE bigint,
  4167. ALTER type_id TYPE bigint;
  4168. --
  4169. -- Name: COLUMN organism.infraspecific_name; Type: COMMENT; Schema: public; Owner: chado
  4170. --
  4171. COMMENT ON COLUMN organism.infraspecific_name IS 'The scientific name for any taxon
  4172. below the rank of species. The rank should be specified using the type_id field
  4173. and the name is provided here.';
  4174. --
  4175. -- Name: COLUMN organism.type_id; Type: COMMENT; Schema: public; Owner: chado
  4176. --
  4177. COMMENT ON COLUMN organism.type_id IS 'A controlled vocabulary term that
  4178. specifies the organism rank below species. It is used when an infraspecific
  4179. name is provided. Ideally, the rank should be a valid ICN name such as
  4180. subspecies, varietas, subvarietas, forma and subforma';
  4181. --
  4182. -- Name: organism_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4183. --
  4184. CREATE TABLE organism_cvterm (
  4185. organism_cvterm_id bigint NOT NULL,
  4186. organism_id bigint NOT NULL,
  4187. cvterm_id bigint NOT NULL,
  4188. rank integer DEFAULT 0 NOT NULL,
  4189. pub_id bigint NOT NULL
  4190. );
  4191. --
  4192. -- Name: TABLE organism_cvterm; Type: COMMENT; Schema: public; Owner: chado
  4193. --
  4194. COMMENT ON TABLE organism_cvterm IS 'organism to cvterm associations. Examples: taxonomic name';
  4195. --
  4196. -- Name: COLUMN organism_cvterm.rank; Type: COMMENT; Schema: public; Owner: chado
  4197. --
  4198. COMMENT ON COLUMN organism_cvterm.rank IS 'Property-Value
  4199. ordering. Any organism_cvterm can have multiple values for any particular
  4200. property type - these are ordered in a list using rank, counting from
  4201. zero. For properties that are single-valued rather than multi-valued,
  4202. the default 0 value should be used';
  4203. --
  4204. -- Name: organism_cvterm_organism_cvterm_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4205. --
  4206. CREATE SEQUENCE organism_cvterm_organism_cvterm_id_seq
  4207. START WITH 1
  4208. INCREMENT BY 1
  4209. NO MINVALUE
  4210. NO MAXVALUE
  4211. CACHE 1;
  4212. --
  4213. -- Name: organism_cvterm_organism_cvterm_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  4214. --
  4215. ALTER SEQUENCE organism_cvterm_organism_cvterm_id_seq OWNED BY organism_cvterm.organism_cvterm_id;
  4216. --
  4217. -- Name: organism_cvtermprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4218. --
  4219. CREATE TABLE organism_cvtermprop (
  4220. organism_cvtermprop_id bigint NOT NULL,
  4221. organism_cvterm_id bigint NOT NULL,
  4222. type_id bigint NOT NULL,
  4223. value text,
  4224. rank integer DEFAULT 0 NOT NULL
  4225. );
  4226. --
  4227. -- Name: TABLE organism_cvtermprop; Type: COMMENT; Schema: public; Owner: chado
  4228. --
  4229. COMMENT ON TABLE organism_cvtermprop IS 'Extensible properties for
  4230. organism to cvterm associations. Examples: qualifiers';
  4231. --
  4232. -- Name: COLUMN organism_cvtermprop.type_id; Type: COMMENT; Schema: public; Owner: chado
  4233. --
  4234. COMMENT ON COLUMN organism_cvtermprop.type_id IS 'The name of the
  4235. property/slot is a cvterm. The meaning of the property is defined in
  4236. that cvterm. ';
  4237. --
  4238. -- Name: COLUMN organism_cvtermprop.value; Type: COMMENT; Schema: public; Owner: chado
  4239. --
  4240. COMMENT ON COLUMN organism_cvtermprop.value IS 'The value of the
  4241. property, represented as text. Numeric values are converted to their
  4242. text representation. This is less efficient than using native database
  4243. types, but is easier to query.';
  4244. --
  4245. -- Name: COLUMN organism_cvtermprop.rank; Type: COMMENT; Schema: public; Owner: chado
  4246. --
  4247. COMMENT ON COLUMN organism_cvtermprop.rank IS 'Property-Value
  4248. ordering. Any organism_cvterm can have multiple values for any particular
  4249. property type - these are ordered in a list using rank, counting from
  4250. zero. For properties that are single-valued rather than multi-valued,
  4251. the default 0 value should be used';
  4252. --
  4253. -- Name: organism_cvtermprop_organism_cvtermprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4254. --
  4255. CREATE SEQUENCE organism_cvtermprop_organism_cvtermprop_id_seq
  4256. START WITH 1
  4257. INCREMENT BY 1
  4258. NO MINVALUE
  4259. NO MAXVALUE
  4260. CACHE 1;
  4261. --
  4262. -- Name: organism_cvtermprop_organism_cvtermprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  4263. --
  4264. ALTER SEQUENCE organism_cvtermprop_organism_cvtermprop_id_seq OWNED BY organism_cvtermprop.organism_cvtermprop_id;
  4265. --
  4266. -- Name: organism_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4267. --
  4268. ALTER TABLE organism_dbxref
  4269. ALTER organism_dbxref_id TYPE bigint,
  4270. ALTER organism_id TYPE bigint,
  4271. ALTER dbxref_id TYPE bigint;
  4272. --
  4273. -- Name: TABLE organism_dbxref; Type: COMMENT; Schema: public; Owner: chado
  4274. --
  4275. COMMENT ON TABLE organism_dbxref IS 'Links an organism to a dbxref.';
  4276. --
  4277. -- Name: organism_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4278. --
  4279. CREATE TABLE organism_pub (
  4280. organism_pub_id bigint NOT NULL,
  4281. organism_id bigint NOT NULL,
  4282. pub_id bigint NOT NULL
  4283. );
  4284. --
  4285. -- Name: TABLE organism_pub; Type: COMMENT; Schema: public; Owner: chado
  4286. --
  4287. COMMENT ON TABLE organism_pub IS 'Attribution for organism.';
  4288. --
  4289. -- Name: organism_pub_organism_pub_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4290. --
  4291. CREATE SEQUENCE organism_pub_organism_pub_id_seq
  4292. START WITH 1
  4293. INCREMENT BY 1
  4294. NO MINVALUE
  4295. NO MAXVALUE
  4296. CACHE 1;
  4297. --
  4298. -- Name: organism_pub_organism_pub_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  4299. --
  4300. ALTER SEQUENCE organism_pub_organism_pub_id_seq OWNED BY organism_pub.organism_pub_id;
  4301. --
  4302. -- Name: organism_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4303. --
  4304. CREATE TABLE organism_relationship (
  4305. organism_relationship_id bigint NOT NULL,
  4306. subject_id bigint NOT NULL,
  4307. object_id bigint NOT NULL,
  4308. type_id bigint NOT NULL,
  4309. rank integer DEFAULT 0 NOT NULL
  4310. );
  4311. --
  4312. -- Name: TABLE organism_relationship; Type: COMMENT; Schema: public; Owner: chado
  4313. --
  4314. COMMENT ON TABLE organism_relationship IS 'Specifies relationships between organisms
  4315. that are not taxonomic. For example, in breeding, relationships such as
  4316. "sterile_with", "incompatible_with", or "fertile_with" would be appropriate. Taxonomic
  4317. relatinoships should be housed in the phylogeny tables.';
  4318. --
  4319. -- Name: organism_relationship_organism_relationship_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4320. --
  4321. CREATE SEQUENCE organism_relationship_organism_relationship_id_seq
  4322. START WITH 1
  4323. INCREMENT BY 1
  4324. NO MINVALUE
  4325. NO MAXVALUE
  4326. CACHE 1;
  4327. --
  4328. -- Name: organism_relationship_organism_relationship_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  4329. --
  4330. ALTER SEQUENCE organism_relationship_organism_relationship_id_seq OWNED BY organism_relationship.organism_relationship_id;
  4331. --
  4332. -- Name: organismprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4333. --
  4334. ALTER TABLE organismprop
  4335. ALTER organismprop_id TYPE bigint,
  4336. ALTER organism_id TYPE bigint,
  4337. ALTER type_id TYPE bigint;
  4338. --
  4339. -- Name: organismprop_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4340. --
  4341. CREATE TABLE organismprop_pub (
  4342. organismprop_pub_id bigint NOT NULL,
  4343. organismprop_id bigint NOT NULL,
  4344. pub_id bigint NOT NULL,
  4345. value text,
  4346. rank integer DEFAULT 0 NOT NULL
  4347. );
  4348. --
  4349. -- Name: TABLE organismprop_pub; Type: COMMENT; Schema: public; Owner: chado
  4350. --
  4351. COMMENT ON TABLE organismprop_pub IS 'Attribution for organismprop.';
  4352. --
  4353. -- Name: organismprop_pub_organismprop_pub_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4354. --
  4355. CREATE SEQUENCE organismprop_pub_organismprop_pub_id_seq
  4356. START WITH 1
  4357. INCREMENT BY 1
  4358. NO MINVALUE
  4359. NO MAXVALUE
  4360. CACHE 1;
  4361. --
  4362. -- Name: organismprop_pub_organismprop_pub_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  4363. --
  4364. ALTER SEQUENCE organismprop_pub_organismprop_pub_id_seq OWNED BY organismprop_pub.organismprop_pub_id;
  4365. --
  4366. -- Name: phendesc; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4367. --
  4368. ALTER TABLE phendesc
  4369. ALTER phendesc_id TYPE bigint,
  4370. ALTER genotype_id TYPE bigint,
  4371. ALTER environment_id TYPE bigint,
  4372. ALTER type_id TYPE bigint,
  4373. ALTER pub_id TYPE bigint;
  4374. --
  4375. -- Name: phenotype; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4376. --
  4377. ALTER TABLE phenotype
  4378. ALTER phenotype_id TYPE bigint,
  4379. ALTER observable_id TYPE bigint,
  4380. ALTER attr_id TYPE bigint,
  4381. ALTER cvalue_id TYPE bigint,
  4382. ALTER assay_id TYPE bigint;
  4383. --
  4384. -- Name: phenotype_comparison; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4385. --
  4386. ALTER TABLE phenotype_comparison
  4387. ALTER phenotype_comparison_id TYPE bigint,
  4388. ALTER genotype1_id TYPE bigint,
  4389. ALTER environment1_id TYPE bigint,
  4390. ALTER genotype2_id TYPE bigint,
  4391. ALTER environment2_id TYPE bigint,
  4392. ALTER phenotype1_id TYPE bigint,
  4393. ALTER phenotype2_id TYPE bigint,
  4394. ALTER pub_id TYPE bigint,
  4395. ALTER organism_id TYPE bigint;
  4396. --
  4397. -- Name: phenotype_comparison_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4398. --
  4399. ALTER TABLE phenotype_comparison_cvterm
  4400. ALTER phenotype_comparison_cvterm_id TYPE bigint,
  4401. ALTER phenotype_comparison_id TYPE bigint,
  4402. ALTER cvterm_id TYPE bigint,
  4403. ALTER pub_id TYPE bigint;
  4404. --
  4405. -- Name: phenotype_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4406. --
  4407. ALTER TABLE phenotype_cvterm
  4408. ALTER phenotype_cvterm_id TYPE bigint,
  4409. ALTER phenotype_id TYPE bigint,
  4410. ALTER cvterm_id TYPE bigint;
  4411. --
  4412. -- Name: TABLE phenotype_cvterm; Type: COMMENT; Schema: public; Owner: chado
  4413. --
  4414. COMMENT ON TABLE phenotype_cvterm IS 'phenotype to cvterm associations.';
  4415. --
  4416. -- Name: phenotypeprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4417. --
  4418. CREATE TABLE phenotypeprop (
  4419. phenotypeprop_id bigint NOT NULL,
  4420. phenotype_id bigint NOT NULL,
  4421. type_id bigint NOT NULL,
  4422. value text,
  4423. rank integer DEFAULT 0 NOT NULL
  4424. );
  4425. --
  4426. -- Name: TABLE phenotypeprop; Type: COMMENT; Schema: public; Owner: chado
  4427. --
  4428. COMMENT ON TABLE phenotypeprop IS 'A phenotype can have any number of slot-value property tags attached to it. This is an alternative to hardcoding a list of columns in the relational schema, and is completely extensible. There is a unique constraint, phenotypeprop_c1, for the combination of phenotype_id, rank, and type_id. Multivalued property-value pairs must be differentiated by rank.';
  4429. --
  4430. -- Name: phenotypeprop_phenotypeprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4431. --
  4432. CREATE SEQUENCE phenotypeprop_phenotypeprop_id_seq
  4433. START WITH 1
  4434. INCREMENT BY 1
  4435. NO MINVALUE
  4436. NO MAXVALUE
  4437. CACHE 1;
  4438. --
  4439. -- Name: phenotypeprop_phenotypeprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  4440. --
  4441. ALTER SEQUENCE phenotypeprop_phenotypeprop_id_seq OWNED BY phenotypeprop.phenotypeprop_id;
  4442. --
  4443. -- Name: phenstatement; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4444. --
  4445. ALTER TABLE phenstatement
  4446. ALTER phenstatement_id TYPE bigint,
  4447. ALTER genotype_id TYPE bigint,
  4448. ALTER environment_id TYPE bigint,
  4449. ALTER phenotype_id TYPE bigint,
  4450. ALTER type_id TYPE bigint,
  4451. ALTER pub_id TYPE bigint;
  4452. --
  4453. -- Name: phylonode; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4454. --
  4455. ALTER TABLE phylonode
  4456. ALTER phylonode_id TYPE bigint,
  4457. ALTER phylotree_id TYPE bigint,
  4458. ALTER parent_phylonode_id TYPE bigint,
  4459. ALTER type_id TYPE bigint,
  4460. ALTER feature_id TYPE bigint;
  4461. --
  4462. -- Name: phylonode_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4463. --
  4464. ALTER TABLE phylonode_dbxref
  4465. ALTER phylonode_dbxref_id TYPE bigint,
  4466. ALTER phylonode_id TYPE bigint,
  4467. ALTER dbxref_id TYPE biginT;
  4468. --
  4469. -- Name: phylonode_organism; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4470. --
  4471. ALTER TABLE phylonode_organism
  4472. ALTER phylonode_organism_id TYPE bigint,
  4473. ALTER phylonode_id TYPE bigint,
  4474. ALTER organism_id TYPE bigint;
  4475. --
  4476. -- Name: phylonode_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4477. --
  4478. ALTER TABLE phylonode_pub
  4479. ALTER phylonode_pub_id TYPE bigint,
  4480. ALTER phylonode_id TYPE bigint,
  4481. ALTER pub_id TYPE bigint;
  4482. --
  4483. -- Name: phylonode_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4484. --
  4485. ALTER TABLE phylonode_relationship
  4486. ALTER phylonode_relationship_id TYPE bigint,
  4487. ALTER subject_id TYPE bigint,
  4488. ALTER object_id TYPE bigint,
  4489. ALTER type_id TYPE bigint,
  4490. ALTER phylotree_id TYPE bigint;
  4491. --
  4492. -- Name: phylonodeprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4493. --
  4494. ALTER TABLE phylonodeprop
  4495. ALTER phylonodeprop_id TYPE bigint,
  4496. ALTER phylonode_id TYPE bigint,
  4497. ALTER type_id TYPE bigint;
  4498. --
  4499. -- Name: phylotree; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4500. --
  4501. ALTER TABLE phylotree
  4502. ALTER phylotree_id TYPE bigint,
  4503. ALTER dbxref_id TYPE bigint,
  4504. ALTER type_id TYPE bigint,
  4505. ALTER analysis_id TYPE bigint;
  4506. --
  4507. -- Name: phylotree_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4508. --
  4509. ALTER TABLE phylotree_pub
  4510. ALTER phylotree_pub_id TYPE bigint,
  4511. ALTER phylotree_id TYPE bigint,
  4512. ALTER pub_id TYPE bigint;
  4513. --
  4514. -- Name: phylotreeprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4515. --
  4516. CREATE TABLE phylotreeprop (
  4517. phylotreeprop_id bigint NOT NULL,
  4518. phylotree_id bigint NOT NULL,
  4519. type_id bigint NOT NULL,
  4520. value text,
  4521. rank integer DEFAULT 0 NOT NULL
  4522. );
  4523. --
  4524. -- Name: TABLE phylotreeprop; Type: COMMENT; Schema: public; Owner: chado
  4525. --
  4526. COMMENT ON TABLE phylotreeprop IS 'A phylotree can have any number of slot-value property
  4527. tags attached to it. This is an alternative to hardcoding a list of columns in the
  4528. relational schema, and is completely extensible.';
  4529. --
  4530. -- Name: COLUMN phylotreeprop.type_id; Type: COMMENT; Schema: public; Owner: chado
  4531. --
  4532. COMMENT ON COLUMN phylotreeprop.type_id IS 'The name of the property/slot is a cvterm.
  4533. The meaning of the property is defined in that cvterm.';
  4534. --
  4535. -- Name: COLUMN phylotreeprop.value; Type: COMMENT; Schema: public; Owner: chado
  4536. --
  4537. COMMENT ON COLUMN phylotreeprop.value IS 'The value of the property, represented as text.
  4538. Numeric values are converted to their text representation. This is less efficient than
  4539. using native database types, but is easier to query.';
  4540. --
  4541. -- Name: COLUMN phylotreeprop.rank; Type: COMMENT; Schema: public; Owner: chado
  4542. --
  4543. COMMENT ON COLUMN phylotreeprop.rank IS 'Property-Value ordering. Any
  4544. phylotree can have multiple values for any particular property type
  4545. these are ordered in a list using rank, counting from zero. For
  4546. properties that are single-valued rather than multi-valued, the
  4547. default 0 value should be used';
  4548. --
  4549. -- Name: phylotreeprop_phylotreeprop_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4550. --
  4551. CREATE SEQUENCE phylotreeprop_phylotreeprop_id_seq
  4552. START WITH 1
  4553. INCREMENT BY 1
  4554. NO MINVALUE
  4555. NO MAXVALUE
  4556. CACHE 1;
  4557. --
  4558. -- Name: phylotreeprop_phylotreeprop_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  4559. --
  4560. ALTER SEQUENCE phylotreeprop_phylotreeprop_id_seq OWNED BY phylotreeprop.phylotreeprop_id;
  4561. --
  4562. -- Name: project; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4563. --
  4564. ALTER TABLE project
  4565. ALTER project_id TYPE bigint,
  4566. ALTER description TYPE text,
  4567. ALTER description DROP NOT NULL;
  4568. --
  4569. -- Name: TABLE project; Type: COMMENT; Schema: public; Owner: chado
  4570. --
  4571. COMMENT ON TABLE project IS 'Standard Chado flexible property table for projects.';
  4572. --
  4573. -- Name: project_analysis; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4574. --
  4575. CREATE TABLE project_analysis (
  4576. project_analysis_id bigint NOT NULL,
  4577. project_id bigint NOT NULL,
  4578. analysis_id bigint NOT NULL,
  4579. rank integer DEFAULT 0 NOT NULL
  4580. );
  4581. --
  4582. -- Name: TABLE project_analysis; Type: COMMENT; Schema: public; Owner: chado
  4583. --
  4584. COMMENT ON TABLE project_analysis IS 'Links an analysis to a project that may contain multiple analyses.
  4585. The rank column can be used to specify a simple ordering in which analyses were executed.';
  4586. --
  4587. -- Name: project_analysis_project_analysis_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4588. --
  4589. CREATE SEQUENCE project_analysis_project_analysis_id_seq
  4590. START WITH 1
  4591. INCREMENT BY 1
  4592. NO MINVALUE
  4593. NO MAXVALUE
  4594. CACHE 1;
  4595. --
  4596. -- Name: project_analysis_project_analysis_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  4597. --
  4598. ALTER SEQUENCE project_analysis_project_analysis_id_seq OWNED BY project_analysis.project_analysis_id;
  4599. --
  4600. -- Name: project_contact; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4601. --
  4602. ALTER TABLE project_contact
  4603. ALTER project_contact_id TYPE bigint,
  4604. ALTER project_id TYPE bigint,
  4605. ALTER contact_id TYPE bigint;
  4606. --
  4607. -- Name: TABLE project_contact; Type: COMMENT; Schema: public; Owner: chado
  4608. --
  4609. COMMENT ON TABLE project_contact IS 'Linking table for associating projects and contacts.';
  4610. --
  4611. -- Name: project_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4612. --
  4613. CREATE TABLE project_dbxref (
  4614. project_dbxref_id bigint NOT NULL,
  4615. project_id bigint NOT NULL,
  4616. dbxref_id bigint NOT NULL,
  4617. is_current boolean DEFAULT true NOT NULL
  4618. );
  4619. --
  4620. -- Name: TABLE project_dbxref; Type: COMMENT; Schema: public; Owner: chado
  4621. --
  4622. COMMENT ON TABLE project_dbxref IS 'project_dbxref links a project to dbxrefs.';
  4623. --
  4624. -- Name: COLUMN project_dbxref.is_current; Type: COMMENT; Schema: public; Owner: chado
  4625. --
  4626. COMMENT ON COLUMN project_dbxref.is_current IS 'The is_current boolean indicates whether the linked dbxref is the current -official- dbxref for the linked project.';
  4627. --
  4628. -- Name: project_dbxref_project_dbxref_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4629. --
  4630. CREATE SEQUENCE project_dbxref_project_dbxref_id_seq
  4631. START WITH 1
  4632. INCREMENT BY 1
  4633. NO MINVALUE
  4634. NO MAXVALUE
  4635. CACHE 1;
  4636. --
  4637. -- Name: project_dbxref_project_dbxref_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  4638. --
  4639. ALTER SEQUENCE project_dbxref_project_dbxref_id_seq OWNED BY project_dbxref.project_dbxref_id;
  4640. --
  4641. -- Name: project_feature; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4642. --
  4643. CREATE TABLE project_feature (
  4644. project_feature_id bigint NOT NULL,
  4645. feature_id bigint NOT NULL,
  4646. project_id bigint NOT NULL
  4647. );
  4648. --
  4649. -- Name: TABLE project_feature; Type: COMMENT; Schema: public; Owner: chado
  4650. --
  4651. COMMENT ON TABLE project_feature IS 'This table is intended associate records in the feature table with a project.';
  4652. --
  4653. -- Name: project_feature_project_feature_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4654. --
  4655. CREATE SEQUENCE project_feature_project_feature_id_seq
  4656. START WITH 1
  4657. INCREMENT BY 1
  4658. NO MINVALUE
  4659. NO MAXVALUE
  4660. CACHE 1;
  4661. --
  4662. -- Name: project_feature_project_feature_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  4663. --
  4664. ALTER SEQUENCE project_feature_project_feature_id_seq OWNED BY project_feature.project_feature_id;
  4665. --
  4666. -- Name: project_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4667. --
  4668. ALTER TABLE project_pub
  4669. ALTER project_pub_id TYPE bigint,
  4670. ALTER project_id TYPE bigint,
  4671. ALTER pub_id TYPE bigint;
  4672. COMMENT ON TABLE project_pub IS 'Linking table for associating projects and publications.';
  4673. --
  4674. -- Name: project_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4675. --
  4676. ALTER TABLE project_relationship
  4677. ALTER project_relationship_id TYPE bigint,
  4678. ALTER subject_project_id TYPE bigint,
  4679. ALTER object_project_id TYPE bigint,
  4680. ALTER type_id TYPE bigint;
  4681. --
  4682. -- Name: TABLE project_relationship; Type: COMMENT; Schema: public; Owner: chado
  4683. --
  4684. COMMENT ON TABLE project_relationship IS 'Linking table for relating projects to each other. For example, a
  4685. given project could be composed of several smaller subprojects';
  4686. --
  4687. -- Name: COLUMN project_relationship.type_id; Type: COMMENT; Schema: public; Owner: chado
  4688. --
  4689. COMMENT ON COLUMN project_relationship.type_id IS 'The cvterm type of the relationship being stated, such as "part of".';
  4690. --
  4691. -- Name: project_stock; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4692. --
  4693. CREATE TABLE project_stock (
  4694. project_stock_id bigint NOT NULL,
  4695. stock_id bigint NOT NULL,
  4696. project_id bigint NOT NULL
  4697. );
  4698. --
  4699. -- Name: TABLE project_stock; Type: COMMENT; Schema: public; Owner: chado
  4700. --
  4701. COMMENT ON TABLE project_stock IS 'This table is intended associate records in the stock table with a project.';
  4702. --
  4703. -- Name: project_stock_project_stock_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4704. --
  4705. CREATE SEQUENCE project_stock_project_stock_id_seq
  4706. START WITH 1
  4707. INCREMENT BY 1
  4708. NO MINVALUE
  4709. NO MAXVALUE
  4710. CACHE 1;
  4711. --
  4712. -- Name: projectprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4713. --
  4714. ALTER TABLE projectprop
  4715. ALTER projectprop_id TYPE bigint,
  4716. ALTER project_id TYPE bigint,
  4717. ALTER type_id TYPE bigint;
  4718. --
  4719. -- Name: protocol; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4720. --
  4721. ALTER TABLE protocol
  4722. ALTER protocol_id TYPE bigint,
  4723. ALTER type_id TYPE bigint,
  4724. ALTER pub_id TYPE bigint,
  4725. ALTER dbxref_id TYPE bigint;
  4726. --
  4727. -- Name: protocolparam; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4728. --
  4729. ALTER TABLE protocolparam
  4730. ALTER protocolparam_id TYPE bigint,
  4731. ALTER protocol_id TYPE bigint,
  4732. ALTER datatype_id TYPE bigint,
  4733. ALTER unittype_id TYPE bigint;
  4734. --
  4735. -- Name: pub_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4736. --
  4737. ALTER TABLE pub_dbxref
  4738. ALTER pub_dbxref_id TYPE bigint,
  4739. ALTER pub_id TYPE bigint,
  4740. ALTER dbxref_id TYPE bigint;
  4741. --
  4742. -- Name: pub_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4743. --
  4744. ALTER TABLE pub_relationship
  4745. ALTER pub_relationship_id TYPE bigint,
  4746. ALTER subject_id TYPE bigint,
  4747. ALTER object_id TYPE bigint,
  4748. ALTER type_id TYPE bigint;
  4749. --
  4750. -- Name: pubauthor; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4751. --
  4752. ALTER TABLE pubauthor
  4753. ALTER pubauthor_id TYPE bigint,
  4754. ALTER pub_id TYPE bigint;
  4755. --
  4756. -- Name: pubauthor_contact; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4757. --
  4758. CREATE TABLE pubauthor_contact (
  4759. pubauthor_contact_id bigint NOT NULL,
  4760. contact_id bigint NOT NULL,
  4761. pubauthor_id bigint NOT NULL
  4762. );
  4763. --
  4764. -- Name: TABLE pubauthor_contact; Type: COMMENT; Schema: public; Owner: chado
  4765. --
  4766. COMMENT ON TABLE pubauthor_contact IS 'An author on a publication may have a corresponding entry in the contact table and this table can link the two.';
  4767. --
  4768. -- Name: pubauthor_contact_pubauthor_contact_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4769. --
  4770. CREATE SEQUENCE pubauthor_contact_pubauthor_contact_id_seq
  4771. START WITH 1
  4772. INCREMENT BY 1
  4773. NO MINVALUE
  4774. NO MAXVALUE
  4775. CACHE 1;
  4776. --
  4777. -- Name: pubauthor_contact_pubauthor_contact_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  4778. --
  4779. ALTER SEQUENCE pubauthor_contact_pubauthor_contact_id_seq OWNED BY pubauthor_contact.pubauthor_contact_id;
  4780. --
  4781. -- Name: pubprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4782. --
  4783. ALTER TABLE pubprop
  4784. ALTER pubprop_id TYPE bigint,
  4785. ALTER pub_id TYPE bigint,
  4786. ALTER type_id TYPE bigint;
  4787. --
  4788. -- Name: quantification; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4789. --
  4790. ALTER TABLE quantification
  4791. ALTER quantification_id TYPE bigint,
  4792. ALTER acquisition_id TYPE bigint,
  4793. ALTER operator_id TYPE bigint,
  4794. ALTER protocol_id TYPE bigint,
  4795. ALTER analysis_id TYPE bigint;
  4796. --
  4797. -- Name: quantification_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4798. --
  4799. ALTER TABLE quantification_relationship
  4800. ALTER quantification_relationship_id TYPE bigint,
  4801. ALTER subject_id TYPE bigint,
  4802. ALTER type_id TYPE bigint,
  4803. ALTER object_id TYPE bigint;
  4804. --
  4805. -- Name: quantificationprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4806. --
  4807. ALTER TABLE quantificationprop
  4808. ALTER quantificationprop_id TYPE bigint,
  4809. ALTER quantification_id TYPE bigint,
  4810. ALTER type_id TYPE bigint;
  4811. --
  4812. -- Name: stock; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4813. --
  4814. ALTER TABLE stock
  4815. ALTER stock_id TYPE bigint,
  4816. ALTER dbxref_id TYPE bigint,
  4817. ALTER organism_id TYPE bigint,
  4818. ALTER type_id TYPE bigint;
  4819. --
  4820. -- Name: stock_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4821. --
  4822. ALTER TABLE stock_cvterm
  4823. ALTER stock_cvterm_id TYPE bigint,
  4824. ALTER stock_id TYPE bigint,
  4825. ALTER cvterm_id TYPE bigint,
  4826. ALTER pub_id TYPE bigint;
  4827. --
  4828. -- Name: stock_cvtermprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4829. --
  4830. ALTER TABLE stock_cvtermprop
  4831. ALTER stock_cvtermprop_id TYPE bigint,
  4832. ALTER stock_cvterm_id TYPE bigint,
  4833. ALTER type_id TYPE bigint;
  4834. --
  4835. -- Name: stock_dbxref; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4836. --
  4837. ALTER TABLE stock_dbxref
  4838. ALTER stock_dbxref_id TYPE bigint,
  4839. ALTER stock_id TYPE bigint,
  4840. ALTER dbxref_id TYPE bigint;
  4841. --
  4842. -- Name: stock_dbxrefprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4843. --
  4844. ALTER TABLE stock_dbxrefprop
  4845. ALTER stock_dbxrefprop_id TYPE bigint,
  4846. ALTER stock_dbxref_id TYPE bigint,
  4847. ALTER type_id TYPE bigint;
  4848. --
  4849. -- Name: stock_feature; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4850. --
  4851. CREATE TABLE stock_feature (
  4852. stock_feature_id bigint NOT NULL,
  4853. feature_id bigint NOT NULL,
  4854. stock_id bigint NOT NULL,
  4855. type_id bigint NOT NULL,
  4856. rank integer DEFAULT 0 NOT NULL
  4857. );
  4858. --
  4859. -- Name: TABLE stock_feature; Type: COMMENT; Schema: public; Owner: chado
  4860. --
  4861. COMMENT ON TABLE stock_feature IS 'Links a stock to a feature.';
  4862. --
  4863. -- Name: stock_feature_stock_feature_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4864. --
  4865. CREATE SEQUENCE stock_feature_stock_feature_id_seq
  4866. START WITH 1
  4867. INCREMENT BY 1
  4868. NO MINVALUE
  4869. NO MAXVALUE
  4870. CACHE 1;
  4871. --
  4872. -- Name: stock_feature_stock_feature_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: chado
  4873. --
  4874. ALTER SEQUENCE stock_feature_stock_feature_id_seq OWNED BY stock_feature.stock_feature_id;
  4875. --
  4876. -- Name: stock_featuremap; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4877. --
  4878. CREATE TABLE stock_featuremap (
  4879. stock_featuremap_id bigint NOT NULL,
  4880. featuremap_id bigint NOT NULL,
  4881. stock_id bigint NOT NULL,
  4882. type_id bigint
  4883. );
  4884. --
  4885. -- Name: TABLE stock_featuremap; Type: COMMENT; Schema: public; Owner: chado
  4886. --
  4887. COMMENT ON TABLE stock_featuremap IS 'Links a featuremap to a stock.';
  4888. --
  4889. -- Name: stock_featuremap_stock_featuremap_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4890. --
  4891. CREATE SEQUENCE stock_featuremap_stock_featuremap_id_seq
  4892. START WITH 1
  4893. INCREMENT BY 1
  4894. NO MINVALUE
  4895. NO MAXVALUE
  4896. CACHE 1;
  4897. --
  4898. -- Name: stock_genotype; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4899. --
  4900. ALTER TABLE stock_genotype
  4901. ALTER stock_genotype_id TYPE bigint,
  4902. ALTER stock_id TYPE bigint,
  4903. ALTER genotype_id TYPE bigint;
  4904. --
  4905. -- Name: stock_library; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4906. --
  4907. CREATE TABLE stock_library (
  4908. stock_library_id bigint NOT NULL,
  4909. library_id bigint NOT NULL,
  4910. stock_id bigint NOT NULL
  4911. );
  4912. --
  4913. -- Name: TABLE stock_library; Type: COMMENT; Schema: public; Owner: chado
  4914. --
  4915. COMMENT ON TABLE stock_library IS 'Links a stock with a library.';
  4916. --
  4917. -- Name: stock_library_stock_library_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4918. --
  4919. CREATE SEQUENCE stock_library_stock_library_id_seq
  4920. START WITH 1
  4921. INCREMENT BY 1
  4922. NO MINVALUE
  4923. NO MAXVALUE
  4924. CACHE 1;
  4925. --
  4926. -- Name: stock_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4927. --
  4928. ALTER TABLE stock_pub
  4929. ALTER stock_pub_id TYPE bigint,
  4930. ALTER stock_id TYPE bigint,
  4931. ALTER pub_id TYPE bigint;
  4932. --
  4933. -- Name: stock_relationship; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4934. --
  4935. ALTER TABLE stock_relationship
  4936. ALTER stock_relationship_id TYPE bigint,
  4937. ALTER subject_id TYPE bigint,
  4938. ALTER object_id TYPE bigint,
  4939. ALTER type_id TYPE bigint;
  4940. --
  4941. -- Name: stock_relationship_cvterm; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4942. --
  4943. ALTER TABLE stock_relationship_cvterm
  4944. ALTER stock_relationship_cvterm_id TYPE bigint,
  4945. ALTER stock_relationship_id TYPE bigint,
  4946. ALTER cvterm_id TYPE bigint,
  4947. ALTER pub_id TYPE bigint;
  4948. --
  4949. -- Name: stock_relationship_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4950. --
  4951. ALTER TABLE stock_relationship_pub
  4952. ALTER stock_relationship_pub_id TYPE bigint,
  4953. ALTER stock_relationship_id TYPE bigint,
  4954. ALTER pub_id TYPE bigint;
  4955. --
  4956. -- Name: stockcollection; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4957. --
  4958. ALTER TABLE stockcollection
  4959. ALTER stockcollection_id TYPE bigint,
  4960. ALTER type_id TYPE bigint,
  4961. ALTER contact_id TYPE bigint;
  4962. --
  4963. -- Name: stockcollection_db; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4964. --
  4965. CREATE TABLE stockcollection_db (
  4966. stockcollection_db_id bigint NOT NULL,
  4967. stockcollection_id bigint NOT NULL,
  4968. db_id bigint NOT NULL
  4969. );
  4970. --
  4971. -- Name: TABLE stockcollection_db; Type: COMMENT; Schema: public; Owner: chado
  4972. --
  4973. COMMENT ON TABLE stockcollection_db IS 'Stock collections may be respresented
  4974. by an external online database. This table associates a stock collection with
  4975. a database where its member stocks can be found. Individual stock that are part
  4976. of this collction should have entries in the stock_dbxref table with the same
  4977. db_id record';
  4978. --
  4979. -- Name: stockcollection_db_stockcollection_db_id_seq; Type: SEQUENCE; Schema: public; Owner: chado
  4980. --
  4981. CREATE SEQUENCE stockcollection_db_stockcollection_db_id_seq
  4982. START WITH 1
  4983. INCREMENT BY 1
  4984. NO MINVALUE
  4985. NO MAXVALUE
  4986. CACHE 1;
  4987. --
  4988. -- Name: stockcollection_stock; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4989. --
  4990. ALTER TABLE stockcollection_stock
  4991. ALTER stockcollection_stock_id TYPE bigint,
  4992. ALTER stockcollection_id TYPE bigint,
  4993. ALTER stock_id TYPE bigint;
  4994. --
  4995. -- Name: stockcollectionprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  4996. --
  4997. ALTER TABLE stockcollectionprop
  4998. ALTER stockcollectionprop_id TYPE bigint,
  4999. ALTER stockcollection_id TYPE bigint,
  5000. ALTER type_id TYPE bigint;
  5001. --
  5002. -- Name: stockprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  5003. --
  5004. ALTER TABLE stockprop
  5005. ALTER stockprop_id TYPE bigint,
  5006. ALTER stock_id TYPE bigint,
  5007. ALTER type_id TYPE bigint;
  5008. --
  5009. -- Name: stockprop_pub; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  5010. --
  5011. ALTER TABLE stockprop_pub
  5012. ALTER stockprop_pub_id TYPE biginT,
  5013. ALTER stockprop_id TYPE bigint,
  5014. ALTER pub_id TYPE bigint;
  5015. --
  5016. -- Name: study; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  5017. --
  5018. ALTER TABLE study
  5019. ALTER study_id TYPE bigint,
  5020. ALTER contact_id TYPE bigint,
  5021. ALTER pub_id TYPE bigint,
  5022. ALTER dbxref_id TYPE bigint;
  5023. --
  5024. -- Name: study_assay; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  5025. --
  5026. ALTER TABLE study_assay
  5027. ALTER study_assay_id TYPE bigint,
  5028. ALTER study_id TYPE bigint,
  5029. ALTER assay_id TYPE bigint;
  5030. --
  5031. -- Name: studydesign; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  5032. --
  5033. ALTER TABLE studydesign
  5034. ALTER studydesign_id TYPE bigint,
  5035. ALTER study_id TYPE bigint;
  5036. --
  5037. -- Name: studydesignprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  5038. --
  5039. ALTER TABLE studydesignprop
  5040. ALTER studydesignprop_id TYPE bigint,
  5041. ALTER studydesign_id TYPE bigint,
  5042. ALTER type_id TYPE bigint;
  5043. --
  5044. -- Name: studyfactor; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  5045. --
  5046. ALTER TABLE studyfactor
  5047. ALTER studyfactor_id TYPE bigint,
  5048. ALTER studydesign_id TYPE bigint,
  5049. ALTER type_id TYPE bigint;
  5050. --
  5051. -- Name: studyfactorvalue; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  5052. --
  5053. ALTER TABLE studyfactorvalue
  5054. ALTER studyfactorvalue_id TYPE bigint,
  5055. ALTER studyfactor_id TYPE bigint,
  5056. ALTER assay_id TYPE bigint;
  5057. --
  5058. -- Name: studyprop; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  5059. --
  5060. ALTER TABLE studyprop
  5061. ALTER studyprop_id TYPE bigint,
  5062. ALTER study_id TYPE bigint,
  5063. ALTER type_id TYPE bigint;
  5064. --
  5065. -- Name: studyprop_feature; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  5066. --
  5067. ALTER TABLE studyprop_feature
  5068. ALTER studyprop_feature_id TYPE bigint,
  5069. ALTER studyprop_id TYPE bigint,
  5070. ALTER feature_id TYPE bigint,
  5071. ALTER type_id TYPE bigint;
  5072. --
  5073. -- Name: tableinfo; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  5074. --
  5075. ALTER TABLE tableinfo
  5076. ALTER tableinfo_Id TYPE bigint,
  5077. ALTER view_on_table_id TYPE bigint,
  5078. ALTER superclass_table_id TYPE bigint;
  5079. --
  5080. -- Name: treatment; Type: TABLE; Schema: public; Owner: chado; Tablespace:
  5081. --
  5082. ALTER TABLE treatment
  5083. ALTER treatment_id TYPE bigint,
  5084. ALTER biomaterial_id TYPE bigint,
  5085. ALTER type_id TYPE bigint,
  5086. ALTER protocol_id TYPE bigint;
  5087. --
  5088. -- Name: analysis_cvterm_id; Type: DEFAULT; Schema: public; Owner: chado
  5089. --
  5090. ALTER TABLE ONLY analysis_cvterm ALTER COLUMN analysis_cvterm_id SET DEFAULT nextval('analysis_cvterm_analysis_cvterm_id_seq'::regclass);
  5091. --
  5092. -- Name: analysis_dbxref_id; Type: DEFAULT; Schema: public; Owner: chado
  5093. --
  5094. ALTER TABLE ONLY analysis_dbxref ALTER COLUMN analysis_dbxref_id SET DEFAULT nextval('analysis_dbxref_analysis_dbxref_id_seq'::regclass);
  5095. --
  5096. -- Name: analysis_pub_id; Type: DEFAULT; Schema: public; Owner: chado
  5097. --
  5098. ALTER TABLE ONLY analysis_pub ALTER COLUMN analysis_pub_id SET DEFAULT nextval('analysis_pub_analysis_pub_id_seq'::regclass);
  5099. --
  5100. -- Name: analysis_relationship_id; Type: DEFAULT; Schema: public; Owner: chado
  5101. --
  5102. ALTER TABLE ONLY analysis_relationship ALTER COLUMN analysis_relationship_id SET DEFAULT nextval('analysis_relationship_analysis_relationship_id_seq'::regclass);
  5103. --
  5104. -- Name: dbprop_id; Type: DEFAULT; Schema: public; Owner: chado
  5105. --
  5106. ALTER TABLE ONLY dbprop ALTER COLUMN dbprop_id SET DEFAULT nextval('dbprop_dbprop_id_seq'::regclass);
  5107. --
  5108. -- Name: feature_contact_id; Type: DEFAULT; Schema: public; Owner: chado
  5109. --
  5110. ALTER TABLE ONLY feature_contact ALTER COLUMN feature_contact_id SET DEFAULT nextval('feature_contact_feature_contact_id_seq'::regclass);
  5111. --
  5112. -- Name: featuremap_contact_id; Type: DEFAULT; Schema: public; Owner: chado
  5113. --
  5114. ALTER TABLE ONLY featuremap_contact ALTER COLUMN featuremap_contact_id SET DEFAULT nextval('featuremap_contact_featuremap_contact_id_seq'::regclass);
  5115. --
  5116. -- Name: featuremap_dbxref_id; Type: DEFAULT; Schema: public; Owner: chado
  5117. --
  5118. ALTER TABLE ONLY featuremap_dbxref ALTER COLUMN featuremap_dbxref_id SET DEFAULT nextval('featuremap_dbxref_featuremap_dbxref_id_seq'::regclass);
  5119. --
  5120. -- Name: featuremap_organism_id; Type: DEFAULT; Schema: public; Owner: chado
  5121. --
  5122. ALTER TABLE ONLY featuremap_organism ALTER COLUMN featuremap_organism_id SET DEFAULT nextval('featuremap_organism_featuremap_organism_id_seq'::regclass);
  5123. --
  5124. -- Name: featuremapprop_id; Type: DEFAULT; Schema: public; Owner: chado
  5125. --
  5126. ALTER TABLE ONLY featuremapprop ALTER COLUMN featuremapprop_id SET DEFAULT nextval('featuremapprop_featuremapprop_id_seq'::regclass);
  5127. --
  5128. -- Name: featureposprop_id; Type: DEFAULT; Schema: public; Owner: chado
  5129. --
  5130. ALTER TABLE ONLY featureposprop
  5131. ALTER COLUMN featureposprop_id SET DEFAULT nextval('featureposprop_featureposprop_id_seq'::regclass);
  5132. --
  5133. -- Name: library_contact_id; Type: DEFAULT; Schema: public; Owner: chado
  5134. --
  5135. ALTER TABLE ONLY library_contact ALTER COLUMN library_contact_id SET DEFAULT nextval('library_contact_library_contact_id_seq'::regclass);
  5136. --
  5137. -- Name: library_expression_id; Type: DEFAULT; Schema: public; Owner: chado
  5138. --
  5139. ALTER TABLE ONLY library_expression ALTER COLUMN library_expression_id SET DEFAULT nextval('library_expression_library_expression_id_seq'::regclass);
  5140. --
  5141. -- Name: library_expressionprop_id; Type: DEFAULT; Schema: public; Owner: chado
  5142. --
  5143. ALTER TABLE ONLY library_expressionprop ALTER COLUMN library_expressionprop_id SET DEFAULT nextval('library_expressionprop_library_expressionprop_id_seq'::regclass);
  5144. --
  5145. -- Name: library_featureprop_id; Type: DEFAULT; Schema: public; Owner: chado
  5146. --
  5147. ALTER TABLE ONLY library_featureprop ALTER COLUMN library_featureprop_id SET DEFAULT nextval('library_featureprop_library_featureprop_id_seq'::regclass);
  5148. --
  5149. -- Name: library_relationship_id; Type: DEFAULT; Schema: public; Owner: chado
  5150. --
  5151. ALTER TABLE ONLY library_relationship ALTER COLUMN library_relationship_id SET DEFAULT nextval('library_relationship_library_relationship_id_seq'::regclass);
  5152. --
  5153. -- Name: library_relationship_pub_id; Type: DEFAULT; Schema: public; Owner: chado
  5154. --
  5155. ALTER TABLE ONLY library_relationship_pub ALTER COLUMN library_relationship_pub_id SET DEFAULT nextval('library_relationship_pub_library_relationship_pub_id_seq'::regclass);
  5156. --
  5157. -- Name: nd_experiment_analysis_id; Type: DEFAULT; Schema: public; Owner: chado
  5158. --
  5159. ALTER TABLE ONLY nd_experiment_analysis ALTER COLUMN nd_experiment_analysis_id SET DEFAULT nextval('nd_experiment_analysis_nd_experiment_analysis_id_seq'::regclass);
  5160. --
  5161. -- Name: organism_cvterm_id; Type: DEFAULT; Schema: public; Owner: chado
  5162. --
  5163. ALTER TABLE ONLY organism_cvterm ALTER COLUMN organism_cvterm_id SET DEFAULT nextval('organism_cvterm_organism_cvterm_id_seq'::regclass);
  5164. --
  5165. -- Name: organism_cvtermprop_id; Type: DEFAULT; Schema: public; Owner: chado
  5166. --
  5167. ALTER TABLE ONLY organism_cvtermprop ALTER COLUMN organism_cvtermprop_id SET DEFAULT nextval('organism_cvtermprop_organism_cvtermprop_id_seq'::regclass);
  5168. --
  5169. -- Name: organism_pub_id; Type: DEFAULT; Schema: public; Owner: chado
  5170. --
  5171. ALTER TABLE ONLY organism_pub ALTER COLUMN organism_pub_id SET DEFAULT nextval('organism_pub_organism_pub_id_seq'::regclass);
  5172. --
  5173. -- Name: organism_relationship_id; Type: DEFAULT; Schema: public; Owner: chado
  5174. --
  5175. ALTER TABLE ONLY organism_relationship ALTER COLUMN organism_relationship_id SET DEFAULT nextval('organism_relationship_organism_relationship_id_seq'::regclass);
  5176. --
  5177. -- Name: organismprop_pub_id; Type: DEFAULT; Schema: public; Owner: chado
  5178. --
  5179. ALTER TABLE ONLY organismprop_pub ALTER COLUMN organismprop_pub_id SET DEFAULT nextval('organismprop_pub_organismprop_pub_id_seq'::regclass);
  5180. --
  5181. -- Name: phenotypeprop_id; Type: DEFAULT; Schema: public; Owner: chado
  5182. --
  5183. ALTER TABLE ONLY phenotypeprop ALTER COLUMN phenotypeprop_id SET DEFAULT nextval('phenotypeprop_phenotypeprop_id_seq'::regclass);
  5184. --
  5185. -- Name: phylotreeprop_id; Type: DEFAULT; Schema: public; Owner: chado
  5186. --
  5187. ALTER TABLE ONLY phylotreeprop ALTER COLUMN phylotreeprop_id SET DEFAULT nextval('phylotreeprop_phylotreeprop_id_seq'::regclass);
  5188. --
  5189. -- Name: project_analysis_id; Type: DEFAULT; Schema: public; Owner: chado
  5190. --
  5191. ALTER TABLE ONLY project_analysis ALTER COLUMN project_analysis_id SET DEFAULT nextval('project_analysis_project_analysis_id_seq'::regclass);
  5192. --
  5193. -- Name: project_dbxref_id; Type: DEFAULT; Schema: public; Owner: chado
  5194. --
  5195. ALTER TABLE ONLY project_dbxref ALTER COLUMN project_dbxref_id SET DEFAULT nextval('project_dbxref_project_dbxref_id_seq'::regclass);
  5196. --
  5197. -- Name: project_feature_id; Type: DEFAULT; Schema: public; Owner: chado
  5198. --
  5199. ALTER TABLE ONLY project_feature ALTER COLUMN project_feature_id SET DEFAULT nextval('project_feature_project_feature_id_seq'::regclass);
  5200. --
  5201. -- Name: project_stock_id; Type: DEFAULT; Schema: public; Owner: chado
  5202. --
  5203. ALTER TABLE ONLY project_stock ALTER COLUMN project_stock_id SET DEFAULT nextval('project_stock_project_stock_id_seq'::regclass);
  5204. --
  5205. -- Name: pubauthor_contact_id; Type: DEFAULT; Schema: public; Owner: chado
  5206. --
  5207. ALTER TABLE ONLY pubauthor_contact ALTER COLUMN pubauthor_contact_id SET DEFAULT nextval('pubauthor_contact_pubauthor_contact_id_seq'::regclass);
  5208. --
  5209. -- Name: stock_feature_id; Type: DEFAULT; Schema: public; Owner: chado
  5210. --
  5211. ALTER TABLE ONLY stock_feature ALTER COLUMN stock_feature_id SET DEFAULT nextval('stock_feature_stock_feature_id_seq'::regclass);
  5212. --
  5213. -- Name: stock_featuremap_id; Type: DEFAULT; Schema: public; Owner: chado
  5214. --
  5215. ALTER TABLE ONLY stock_featuremap ALTER COLUMN stock_featuremap_id SET DEFAULT nextval('stock_featuremap_stock_featuremap_id_seq'::regclass);
  5216. --
  5217. -- Name: stock_library_id; Type: DEFAULT; Schema: public; Owner: chado
  5218. --
  5219. ALTER TABLE ONLY stock_library ALTER COLUMN stock_library_id SET DEFAULT nextval('stock_library_stock_library_id_seq'::regclass);
  5220. --
  5221. -- Name: stockcollection_db_id; Type: DEFAULT; Schema: public; Owner: chado
  5222. --
  5223. ALTER TABLE ONLY stockcollection_db ALTER COLUMN stockcollection_db_id SET DEFAULT nextval('stockcollection_db_stockcollection_db_id_seq'::regclass);
  5224. --
  5225. -- Name: analysis_cvterm_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5226. --
  5227. ALTER TABLE ONLY analysis_cvterm
  5228. ADD CONSTRAINT analysis_cvterm_c1 UNIQUE (analysis_id, cvterm_id, rank);
  5229. --
  5230. -- Name: analysis_cvterm_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5231. --
  5232. ALTER TABLE ONLY analysis_cvterm
  5233. ADD CONSTRAINT analysis_cvterm_pkey PRIMARY KEY (analysis_cvterm_id);
  5234. --
  5235. -- Name: analysis_dbxref_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5236. --
  5237. ALTER TABLE ONLY analysis_dbxref
  5238. ADD CONSTRAINT analysis_dbxref_c1 UNIQUE (analysis_id, dbxref_id);
  5239. --
  5240. -- Name: analysis_dbxref_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5241. --
  5242. ALTER TABLE ONLY analysis_dbxref
  5243. ADD CONSTRAINT analysis_dbxref_pkey PRIMARY KEY (analysis_dbxref_id);
  5244. --
  5245. -- Name: analysis_pub_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5246. --
  5247. ALTER TABLE ONLY analysis_pub
  5248. ADD CONSTRAINT analysis_pub_c1 UNIQUE (analysis_id, pub_id);
  5249. --
  5250. -- Name: analysis_pub_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5251. --
  5252. ALTER TABLE ONLY analysis_pub
  5253. ADD CONSTRAINT analysis_pub_pkey PRIMARY KEY (analysis_pub_id);
  5254. --
  5255. -- Name: analysis_relationship_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5256. --
  5257. ALTER TABLE ONLY analysis_relationship
  5258. ADD CONSTRAINT analysis_relationship_c1 UNIQUE (subject_id, object_id, type_id, rank);
  5259. --
  5260. -- Name: analysis_relationship_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5261. --
  5262. ALTER TABLE ONLY analysis_relationship
  5263. ADD CONSTRAINT analysis_relationship_pkey PRIMARY KEY (analysis_relationship_id);
  5264. --
  5265. -- Name: contactprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5266. --
  5267. ALTER TABLE ONLY contactprop
  5268. ADD CONSTRAINT contactprop_c1 UNIQUE (contact_id, type_id, rank);
  5269. --
  5270. -- Name: contactprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5271. --
  5272. ALTER TABLE ONLY contactprop
  5273. ADD CONSTRAINT contactprop_pkey PRIMARY KEY (contactprop_id);
  5274. --
  5275. -- Name: dbprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5276. --
  5277. ALTER TABLE ONLY dbprop
  5278. ADD CONSTRAINT dbprop_c1 UNIQUE (db_id, type_id, rank);
  5279. --
  5280. -- Name: dbprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5281. --
  5282. ALTER TABLE ONLY dbprop
  5283. ADD CONSTRAINT dbprop_pkey PRIMARY KEY (dbprop_id);
  5284. --
  5285. -- Name: expression_cvterm_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5286. --
  5287. ALTER TABLE ONLY expression_cvterm
  5288. DROP CONSTRAINT expression_cvterm_c1;
  5289. ALTER TABLE ONLY expression_cvterm
  5290. ADD CONSTRAINT expression_cvterm_c1 UNIQUE (expression_id, cvterm_id, rank, cvterm_type_id);
  5291. --
  5292. -- Name: contactprop_id; Type: DEFAULT; Schema: public; Owner: chado
  5293. --
  5294. ALTER TABLE ONLY contactprop ALTER COLUMN contactprop_id SET DEFAULT nextval('contactprop_contactprop_id_seq'::regclass);
  5295. --
  5296. -- Name: feature_contact_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5297. --
  5298. ALTER TABLE ONLY feature_contact
  5299. ADD CONSTRAINT feature_contact_c1 UNIQUE (feature_id, contact_id);
  5300. --
  5301. -- Name: feature_contact_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5302. --
  5303. ALTER TABLE ONLY feature_contact
  5304. ADD CONSTRAINT feature_contact_pkey PRIMARY KEY (feature_contact_id);
  5305. --
  5306. -- Name: featuremap_contact_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5307. --
  5308. ALTER TABLE ONLY featuremap_contact
  5309. ADD CONSTRAINT featuremap_contact_c1 UNIQUE (featuremap_id, contact_id);
  5310. --
  5311. -- Name: featuremap_contact_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5312. --
  5313. ALTER TABLE ONLY featuremap_contact
  5314. ADD CONSTRAINT featuremap_contact_pkey PRIMARY KEY (featuremap_contact_id);
  5315. --
  5316. -- Name: featuremap_dbxref_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5317. --
  5318. ALTER TABLE ONLY featuremap_dbxref
  5319. ADD CONSTRAINT featuremap_dbxref_pkey PRIMARY KEY (featuremap_dbxref_id);
  5320. --
  5321. -- Name: featuremap_organism_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5322. --
  5323. ALTER TABLE ONLY featuremap_organism
  5324. ADD CONSTRAINT featuremap_organism_c1 UNIQUE (featuremap_id, organism_id);
  5325. --
  5326. -- Name: featuremap_organism_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5327. --
  5328. ALTER TABLE ONLY featuremap_organism
  5329. ADD CONSTRAINT featuremap_organism_pkey PRIMARY KEY (featuremap_organism_id);
  5330. --
  5331. -- Name: featuremapprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5332. --
  5333. ALTER TABLE ONLY featuremapprop
  5334. ADD CONSTRAINT featuremapprop_c1 UNIQUE (featuremap_id, type_id, rank);
  5335. --
  5336. -- Name: featuremapprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5337. --
  5338. ALTER TABLE ONLY featuremapprop
  5339. ADD CONSTRAINT featuremapprop_pkey PRIMARY KEY (featuremapprop_id);
  5340. --
  5341. -- Name: featureposprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5342. --
  5343. ALTER TABLE ONLY featureposprop
  5344. ADD CONSTRAINT featureposprop_c1 UNIQUE (featurepos_id, type_id, rank);
  5345. --
  5346. -- Name: featureposprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5347. --
  5348. ALTER TABLE ONLY featureposprop
  5349. ADD CONSTRAINT featureposprop_pkey PRIMARY KEY (featureposprop_id);
  5350. --
  5351. -- Name: library_contact_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5352. --
  5353. ALTER TABLE ONLY library_contact
  5354. ADD CONSTRAINT library_contact_c1 UNIQUE (library_id, contact_id);
  5355. --
  5356. -- Name: library_contact_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5357. --
  5358. ALTER TABLE ONLY library_contact
  5359. ADD CONSTRAINT library_contact_pkey PRIMARY KEY (library_contact_id);
  5360. --
  5361. -- Name: library_expression_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5362. --
  5363. ALTER TABLE ONLY library_expression
  5364. ADD CONSTRAINT library_expression_c1 UNIQUE (library_id, expression_id);
  5365. --
  5366. -- Name: library_expression_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5367. --
  5368. ALTER TABLE ONLY library_expression
  5369. ADD CONSTRAINT library_expression_pkey PRIMARY KEY (library_expression_id);
  5370. --
  5371. -- Name: library_expressionprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5372. --
  5373. ALTER TABLE ONLY library_expressionprop
  5374. ADD CONSTRAINT library_expressionprop_c1 UNIQUE (library_expression_id, type_id, rank);
  5375. --
  5376. -- Name: library_expressionprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5377. --
  5378. ALTER TABLE ONLY library_expressionprop
  5379. ADD CONSTRAINT library_expressionprop_pkey PRIMARY KEY (library_expressionprop_id);
  5380. --
  5381. -- Name: library_featureprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5382. --
  5383. ALTER TABLE ONLY library_featureprop
  5384. ADD CONSTRAINT library_featureprop_c1 UNIQUE (library_feature_id, type_id, rank);
  5385. --
  5386. -- Name: library_featureprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5387. --
  5388. ALTER TABLE ONLY library_featureprop
  5389. ADD CONSTRAINT library_featureprop_pkey PRIMARY KEY (library_featureprop_id);
  5390. --
  5391. -- Name: library_relationship_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5392. --
  5393. ALTER TABLE ONLY library_relationship
  5394. ADD CONSTRAINT library_relationship_c1 UNIQUE (subject_id, object_id, type_id);
  5395. --
  5396. -- Name: library_relationship_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5397. --
  5398. ALTER TABLE ONLY library_relationship
  5399. ADD CONSTRAINT library_relationship_pkey PRIMARY KEY (library_relationship_id);
  5400. --
  5401. -- Name: library_relationship_pub_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5402. --
  5403. ALTER TABLE ONLY library_relationship_pub
  5404. ADD CONSTRAINT library_relationship_pub_c1 UNIQUE (library_relationship_id, pub_id);
  5405. --
  5406. -- Name: library_relationship_pub_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5407. --
  5408. ALTER TABLE ONLY library_relationship_pub
  5409. ADD CONSTRAINT library_relationship_pub_pkey PRIMARY KEY (library_relationship_pub_id);
  5410. --
  5411. -- Name: nd_experiment_analysis_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5412. --
  5413. ALTER TABLE ONLY nd_experiment_analysis
  5414. ADD CONSTRAINT nd_experiment_analysis_pkey PRIMARY KEY (nd_experiment_analysis_id);
  5415. --
  5416. -- Name: nd_experiment_project_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5417. --
  5418. ALTER TABLE ONLY nd_experiment_project
  5419. ADD CONSTRAINT nd_experiment_project_c1 UNIQUE (project_id, nd_experiment_id);
  5420. ALTER TABLE ONLY organism
  5421. DROP CONSTRAINT organism_c1;
  5422. ALTER TABLE ONLY organism
  5423. ADD CONSTRAINT organism_c1 UNIQUE (genus, species, type_id, infraspecific_name);
  5424. --
  5425. -- Name: organism_cvterm_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5426. --
  5427. ALTER TABLE ONLY organism_cvterm
  5428. ADD CONSTRAINT organism_cvterm_c1 UNIQUE (organism_id, cvterm_id, pub_id);
  5429. --
  5430. -- Name: organism_cvterm_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5431. --
  5432. ALTER TABLE ONLY organism_cvterm
  5433. ADD CONSTRAINT organism_cvterm_pkey PRIMARY KEY (organism_cvterm_id);
  5434. --
  5435. -- Name: organism_cvtermprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5436. --
  5437. ALTER TABLE ONLY organism_cvtermprop
  5438. ADD CONSTRAINT organism_cvtermprop_c1 UNIQUE (organism_cvterm_id, type_id, rank);
  5439. --
  5440. -- Name: organism_cvtermprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5441. --
  5442. ALTER TABLE ONLY organism_cvtermprop
  5443. ADD CONSTRAINT organism_cvtermprop_pkey PRIMARY KEY (organism_cvtermprop_id);
  5444. --
  5445. -- Name: organism_pub_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5446. --
  5447. ALTER TABLE ONLY organism_pub
  5448. ADD CONSTRAINT organism_pub_c1 UNIQUE (organism_id, pub_id);
  5449. --
  5450. -- Name: organism_pub_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5451. --
  5452. ALTER TABLE ONLY organism_pub
  5453. ADD CONSTRAINT organism_pub_pkey PRIMARY KEY (organism_pub_id);
  5454. --
  5455. -- Name: organism_relationship_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5456. --
  5457. ALTER TABLE ONLY organism_relationship
  5458. ADD CONSTRAINT organism_relationship_c1 UNIQUE (subject_id, object_id, type_id, rank);
  5459. --
  5460. -- Name: organism_relationship_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5461. --
  5462. ALTER TABLE ONLY organism_relationship
  5463. ADD CONSTRAINT organism_relationship_pkey PRIMARY KEY (organism_relationship_id);
  5464. --
  5465. -- Name: organismprop_pub_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5466. --
  5467. ALTER TABLE ONLY organismprop_pub
  5468. ADD CONSTRAINT organismprop_pub_c1 UNIQUE (organismprop_id, pub_id);
  5469. --
  5470. -- Name: organismprop_pub_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5471. --
  5472. ALTER TABLE ONLY organismprop_pub
  5473. ADD CONSTRAINT organismprop_pub_pkey PRIMARY KEY (organismprop_pub_id);
  5474. --
  5475. -- Name: phenotypeprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5476. --
  5477. ALTER TABLE ONLY phenotypeprop
  5478. ADD CONSTRAINT phenotypeprop_c1 UNIQUE (phenotype_id, type_id, rank);
  5479. --
  5480. -- Name: phenotypeprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5481. --
  5482. ALTER TABLE ONLY phenotypeprop
  5483. ADD CONSTRAINT phenotypeprop_pkey PRIMARY KEY (phenotypeprop_id);
  5484. --
  5485. -- Name: phylotreeprop_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5486. --
  5487. ALTER TABLE ONLY phylotreeprop
  5488. ADD CONSTRAINT phylotreeprop_c1 UNIQUE (phylotree_id, type_id, rank);
  5489. --
  5490. -- Name: phylotreeprop_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5491. --
  5492. ALTER TABLE ONLY phylotreeprop
  5493. ADD CONSTRAINT phylotreeprop_pkey PRIMARY KEY (phylotreeprop_id);
  5494. --
  5495. -- Name: project_analysis_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5496. --
  5497. ALTER TABLE ONLY project_analysis
  5498. ADD CONSTRAINT project_analysis_c1 UNIQUE (project_id, analysis_id);
  5499. --
  5500. -- Name: project_analysis_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5501. --
  5502. ALTER TABLE ONLY project_analysis
  5503. ADD CONSTRAINT project_analysis_pkey PRIMARY KEY (project_analysis_id);
  5504. --
  5505. -- Name: project_dbxref_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5506. --
  5507. ALTER TABLE ONLY project_dbxref
  5508. ADD CONSTRAINT project_dbxref_c1 UNIQUE (project_id, dbxref_id);
  5509. --
  5510. -- Name: project_dbxref_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5511. --
  5512. ALTER TABLE ONLY project_dbxref
  5513. ADD CONSTRAINT project_dbxref_pkey PRIMARY KEY (project_dbxref_id);
  5514. --
  5515. -- Name: project_feature_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5516. --
  5517. ALTER TABLE ONLY project_feature
  5518. ADD CONSTRAINT project_feature_c1 UNIQUE (feature_id, project_id);
  5519. --
  5520. -- Name: project_feature_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5521. --
  5522. ALTER TABLE ONLY project_feature
  5523. ADD CONSTRAINT project_feature_pkey PRIMARY KEY (project_feature_id);
  5524. --
  5525. -- Name: project_stock_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5526. --
  5527. ALTER TABLE ONLY project_stock
  5528. ADD CONSTRAINT project_stock_c1 UNIQUE (stock_id, project_id);
  5529. --
  5530. -- Name: project_stock_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5531. --
  5532. ALTER TABLE ONLY project_stock
  5533. ADD CONSTRAINT project_stock_pkey PRIMARY KEY (project_stock_id);
  5534. --
  5535. -- Name: pubauthor_contact_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5536. --
  5537. ALTER TABLE ONLY pubauthor_contact
  5538. ADD CONSTRAINT pubauthor_contact_c1 UNIQUE (contact_id, pubauthor_id);
  5539. --
  5540. -- Name: pubauthor_contact_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5541. --
  5542. ALTER TABLE ONLY pubauthor_contact
  5543. ADD CONSTRAINT pubauthor_contact_pkey PRIMARY KEY (pubauthor_contact_id);
  5544. --
  5545. -- Name: stock_feature_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5546. --
  5547. ALTER TABLE ONLY stock_feature
  5548. ADD CONSTRAINT stock_feature_c1 UNIQUE (feature_id, stock_id, type_id, rank);
  5549. --
  5550. -- Name: stock_feature_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5551. --
  5552. ALTER TABLE ONLY stock_feature
  5553. ADD CONSTRAINT stock_feature_pkey PRIMARY KEY (stock_feature_id);
  5554. --
  5555. -- Name: stock_featuremap_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5556. --
  5557. ALTER TABLE ONLY stock_featuremap
  5558. ADD CONSTRAINT stock_featuremap_c1 UNIQUE (featuremap_id, stock_id, type_id);
  5559. --
  5560. -- Name: stock_featuremap_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5561. --
  5562. ALTER TABLE ONLY stock_featuremap
  5563. ADD CONSTRAINT stock_featuremap_pkey PRIMARY KEY (stock_featuremap_id);
  5564. --
  5565. -- Name: stock_library_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5566. --
  5567. ALTER TABLE ONLY stock_library
  5568. ADD CONSTRAINT stock_library_c1 UNIQUE (library_id, stock_id);
  5569. --
  5570. -- Name: stock_library_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5571. --
  5572. ALTER TABLE ONLY stock_library
  5573. ADD CONSTRAINT stock_library_pkey PRIMARY KEY (stock_library_id);
  5574. --
  5575. -- Name: stockcollection_db_c1; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5576. --
  5577. ALTER TABLE ONLY stockcollection_db
  5578. ADD CONSTRAINT stockcollection_db_c1 UNIQUE (stockcollection_id, db_id);
  5579. --
  5580. -- Name: stockcollection_db_pkey; Type: CONSTRAINT; Schema: public; Owner: chado; Tablespace:
  5581. --
  5582. ALTER TABLE ONLY stockcollection_db
  5583. ADD CONSTRAINT stockcollection_db_pkey PRIMARY KEY (stockcollection_db_id);
  5584. --
  5585. -- Name: analysis_cvterm_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5586. --
  5587. CREATE INDEX analysis_cvterm_idx1 ON analysis_cvterm USING btree (analysis_id);
  5588. --
  5589. -- Name: analysis_cvterm_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5590. --
  5591. CREATE INDEX analysis_cvterm_idx2 ON analysis_cvterm USING btree (cvterm_id);
  5592. --
  5593. -- Name: analysis_dbxref_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5594. --
  5595. CREATE INDEX analysis_dbxref_idx1 ON analysis_dbxref USING btree (analysis_id);
  5596. --
  5597. -- Name: analysis_dbxref_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5598. --
  5599. CREATE INDEX analysis_dbxref_idx2 ON analysis_dbxref USING btree (dbxref_id);
  5600. --
  5601. -- Name: analysis_pub_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5602. --
  5603. CREATE INDEX analysis_pub_idx1 ON analysis_pub USING btree (analysis_id);
  5604. --
  5605. -- Name: analysis_pub_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5606. --
  5607. CREATE INDEX analysis_pub_idx2 ON analysis_pub USING btree (pub_id);
  5608. --
  5609. -- Name: analysis_relationship_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5610. --
  5611. CREATE INDEX analysis_relationship_idx1 ON analysis_relationship USING btree (subject_id);
  5612. --
  5613. -- Name: analysis_relationship_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5614. --
  5615. CREATE INDEX analysis_relationship_idx2 ON analysis_relationship USING btree (object_id);
  5616. --
  5617. -- Name: analysis_relationship_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5618. --
  5619. CREATE INDEX analysis_relationship_idx3 ON analysis_relationship USING btree (type_id);
  5620. --
  5621. -- Name: analysisfeatureprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5622. --
  5623. DROP INDEX analysisfeatureprop_idx1;
  5624. CREATE INDEX analysisfeatureprop_idx1 ON analysisfeatureprop USING btree (analysisfeature_id);
  5625. --
  5626. -- Name: analysisfeatureprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5627. --
  5628. DROP INDEX analysisfeatureprop_idx2;
  5629. CREATE INDEX analysisfeatureprop_idx2 ON analysisfeatureprop USING btree (type_id);
  5630. --
  5631. -- Name: contactprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5632. --
  5633. CREATE INDEX contactprop_idx1 ON contactprop USING btree (contact_id);
  5634. --
  5635. -- Name: contactprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5636. --
  5637. CREATE INDEX contactprop_idx2 ON contactprop USING btree (type_id);
  5638. --
  5639. -- Name: dbprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5640. --
  5641. CREATE INDEX dbprop_idx1 ON dbprop USING btree (db_id);
  5642. --
  5643. -- Name: dbprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5644. --
  5645. CREATE INDEX dbprop_idx2 ON dbprop USING btree (type_id);
  5646. --
  5647. -- Name: feature_contact_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5648. --
  5649. CREATE INDEX feature_contact_idx1 ON feature_contact USING btree (feature_id);
  5650. --
  5651. -- Name: feature_contact_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5652. --
  5653. CREATE INDEX feature_contact_idx2 ON feature_contact USING btree (contact_id);
  5654. --
  5655. -- Name: featuremap_contact_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5656. --
  5657. CREATE INDEX featuremap_contact_idx1 ON featuremap_contact USING btree (featuremap_id);
  5658. --
  5659. -- Name: featuremap_contact_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5660. --
  5661. CREATE INDEX featuremap_contact_idx2 ON featuremap_contact USING btree (contact_id);
  5662. --
  5663. -- Name: featuremap_dbxref_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5664. --
  5665. CREATE INDEX featuremap_dbxref_idx1 ON featuremap_dbxref USING btree (featuremap_id);
  5666. --
  5667. -- Name: featuremap_dbxref_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5668. --
  5669. CREATE INDEX featuremap_dbxref_idx2 ON featuremap_dbxref USING btree (dbxref_id);
  5670. --
  5671. -- Name: featuremap_organism_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5672. --
  5673. CREATE INDEX featuremap_organism_idx1 ON featuremap_organism USING btree (featuremap_id);
  5674. --
  5675. -- Name: featuremap_organism_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5676. --
  5677. CREATE INDEX featuremap_organism_idx2 ON featuremap_organism USING btree (organism_id);
  5678. --
  5679. -- Name: featuremapprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5680. --
  5681. CREATE INDEX featuremapprop_idx1 ON featuremapprop USING btree (featuremap_id);
  5682. --
  5683. -- Name: featuremapprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5684. --
  5685. CREATE INDEX featuremapprop_idx2 ON featuremapprop USING btree (type_id);
  5686. --
  5687. -- Name: featureposprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5688. --
  5689. CREATE INDEX featureposprop_idx1 ON featureposprop USING btree (featurepos_id);
  5690. --
  5691. -- Name: featureposprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5692. --
  5693. CREATE INDEX featureposprop_idx2 ON featureposprop USING btree (type_id);
  5694. --
  5695. -- Name: library_contact_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5696. --
  5697. CREATE INDEX library_contact_idx1 ON library USING btree (library_id);
  5698. --
  5699. -- Name: library_contact_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5700. --
  5701. CREATE INDEX library_contact_idx2 ON contact USING btree (contact_id);
  5702. --
  5703. -- Name: library_expression_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5704. --
  5705. CREATE INDEX library_expression_idx1 ON library_expression USING btree (library_id);
  5706. --
  5707. -- Name: library_expression_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5708. --
  5709. CREATE INDEX library_expression_idx2 ON library_expression USING btree (expression_id);
  5710. --
  5711. -- Name: library_expression_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5712. --
  5713. CREATE INDEX library_expression_idx3 ON library_expression USING btree (pub_id);
  5714. --
  5715. -- Name: library_expressionprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5716. --
  5717. CREATE INDEX library_expressionprop_idx1 ON library_expressionprop USING btree (library_expression_id);
  5718. --
  5719. -- Name: library_expressionprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5720. --
  5721. CREATE INDEX library_expressionprop_idx2 ON library_expressionprop USING btree (type_id);
  5722. --
  5723. -- Name: library_featureprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5724. --
  5725. CREATE INDEX library_featureprop_idx1 ON library_featureprop USING btree (library_feature_id);
  5726. --
  5727. -- Name: library_featureprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5728. --
  5729. CREATE INDEX library_featureprop_idx2 ON library_featureprop USING btree (type_id);
  5730. --
  5731. -- Name: library_relationship_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5732. --
  5733. CREATE INDEX library_relationship_idx1 ON library_relationship USING btree (subject_id);
  5734. --
  5735. -- Name: library_relationship_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5736. --
  5737. CREATE INDEX library_relationship_idx2 ON library_relationship USING btree (object_id);
  5738. --
  5739. -- Name: library_relationship_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5740. --
  5741. CREATE INDEX library_relationship_idx3 ON library_relationship USING btree (type_id);
  5742. --
  5743. -- Name: library_relationship_pub_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5744. --
  5745. CREATE INDEX library_relationship_pub_idx1 ON library_relationship_pub USING btree (library_relationship_id);
  5746. --
  5747. -- Name: library_relationship_pub_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5748. --
  5749. CREATE INDEX library_relationship_pub_idx2 ON library_relationship_pub USING btree (pub_id);
  5750. --
  5751. -- Name: nd_experiment_analysis_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5752. --
  5753. CREATE INDEX nd_experiment_analysis_idx1 ON nd_experiment_analysis USING btree (nd_experiment_id);
  5754. --
  5755. -- Name: nd_experiment_analysis_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5756. --
  5757. CREATE INDEX nd_experiment_analysis_idx2 ON nd_experiment_analysis USING btree (analysis_id);
  5758. --
  5759. -- Name: nd_experiment_analysis_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5760. --
  5761. CREATE INDEX nd_experiment_analysis_idx3 ON nd_experiment_analysis USING btree (type_id);
  5762. --
  5763. -- Name: nd_experiment_contact_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5764. --
  5765. CREATE INDEX nd_experiment_contact_idx1 ON nd_experiment_contact USING btree (nd_experiment_id);
  5766. --
  5767. -- Name: nd_experiment_contact_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5768. --
  5769. CREATE INDEX nd_experiment_contact_idx2 ON nd_experiment_contact USING btree (contact_id);
  5770. --
  5771. -- Name: nd_experiment_dbxref_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5772. --
  5773. CREATE INDEX nd_experiment_dbxref_idx1 ON nd_experiment_dbxref USING btree (nd_experiment_id);
  5774. --
  5775. -- Name: nd_experiment_dbxref_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5776. --
  5777. CREATE INDEX nd_experiment_dbxref_idx2 ON nd_experiment_dbxref USING btree (dbxref_id);
  5778. --
  5779. -- Name: nd_experiment_genotype_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5780. --
  5781. CREATE INDEX nd_experiment_genotype_idx1 ON nd_experiment_genotype USING btree (nd_experiment_id);
  5782. --
  5783. -- Name: nd_experiment_genotype_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5784. --
  5785. CREATE INDEX nd_experiment_genotype_idx2 ON nd_experiment_genotype USING btree (genotype_id);
  5786. --
  5787. -- Name: nd_experiment_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5788. --
  5789. CREATE INDEX nd_experiment_idx1 ON nd_experiment USING btree (nd_geolocation_id);
  5790. --
  5791. -- Name: nd_experiment_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5792. --
  5793. CREATE INDEX nd_experiment_idx2 ON nd_experiment USING btree (type_id);
  5794. --
  5795. -- Name: nd_experiment_phenotype_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5796. --
  5797. CREATE INDEX nd_experiment_phenotype_idx1 ON nd_experiment_phenotype USING btree (nd_experiment_id);
  5798. --
  5799. -- Name: nd_experiment_phenotype_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5800. --
  5801. CREATE INDEX nd_experiment_phenotype_idx2 ON nd_experiment_phenotype USING btree (phenotype_id);
  5802. --
  5803. -- Name: nd_experiment_project_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5804. --
  5805. CREATE INDEX nd_experiment_project_idx1 ON nd_experiment_project USING btree (project_id);
  5806. --
  5807. -- Name: nd_experiment_project_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5808. --
  5809. CREATE INDEX nd_experiment_project_idx2 ON nd_experiment_project USING btree (nd_experiment_id);
  5810. --
  5811. -- Name: nd_experiment_protocol_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5812. --
  5813. CREATE INDEX nd_experiment_protocol_idx1 ON nd_experiment_protocol USING btree (nd_experiment_id);
  5814. --
  5815. -- Name: nd_experiment_protocol_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5816. --
  5817. CREATE INDEX nd_experiment_protocol_idx2 ON nd_experiment_protocol USING btree (nd_protocol_id);
  5818. --
  5819. -- Name: nd_experiment_stock_dbxref_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5820. --
  5821. CREATE INDEX nd_experiment_stock_dbxref_idx1 ON nd_experiment_stock_dbxref USING btree (nd_experiment_stock_id);
  5822. --
  5823. -- Name: nd_experiment_stock_dbxref_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5824. --
  5825. CREATE INDEX nd_experiment_stock_dbxref_idx2 ON nd_experiment_stock_dbxref USING btree (dbxref_id);
  5826. --
  5827. -- Name: nd_experiment_stock_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5828. --
  5829. CREATE INDEX nd_experiment_stock_idx1 ON nd_experiment_stock USING btree (nd_experiment_id);
  5830. --
  5831. -- Name: nd_experiment_stock_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5832. --
  5833. CREATE INDEX nd_experiment_stock_idx2 ON nd_experiment_stock USING btree (stock_id);
  5834. --
  5835. -- Name: nd_experiment_stock_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5836. --
  5837. CREATE INDEX nd_experiment_stock_idx3 ON nd_experiment_stock USING btree (type_id);
  5838. --
  5839. -- Name: nd_experiment_stockprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5840. --
  5841. CREATE INDEX nd_experiment_stockprop_idx1 ON nd_experiment_stockprop USING btree (nd_experiment_stock_id);
  5842. --
  5843. -- Name: nd_experiment_stockprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5844. --
  5845. CREATE INDEX nd_experiment_stockprop_idx2 ON nd_experiment_stockprop USING btree (type_id);
  5846. --
  5847. -- Name: nd_experimentprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5848. --
  5849. CREATE INDEX nd_experimentprop_idx1 ON nd_experimentprop USING btree (nd_experiment_id);
  5850. --
  5851. -- Name: nd_experimentprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5852. --
  5853. CREATE INDEX nd_experimentprop_idx2 ON nd_experimentprop USING btree (type_id);
  5854. --
  5855. -- Name: nd_geolocation_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5856. --
  5857. CREATE INDEX nd_geolocation_idx1 ON nd_geolocation USING btree (latitude);
  5858. --
  5859. -- Name: nd_geolocation_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5860. --
  5861. CREATE INDEX nd_geolocation_idx2 ON nd_geolocation USING btree (longitude);
  5862. --
  5863. -- Name: nd_geolocation_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5864. --
  5865. CREATE INDEX nd_geolocation_idx3 ON nd_geolocation USING btree (altitude);
  5866. --
  5867. -- Name: nd_geolocationprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5868. --
  5869. CREATE INDEX nd_geolocationprop_idx1 ON nd_geolocationprop USING btree (nd_geolocation_id);
  5870. --
  5871. -- Name: nd_geolocationprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5872. --
  5873. CREATE INDEX nd_geolocationprop_idx2 ON nd_geolocationprop USING btree (type_id);
  5874. --
  5875. -- Name: nd_protocol_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5876. --
  5877. CREATE INDEX nd_protocol_idx1 ON nd_protocol USING btree (type_id);
  5878. --
  5879. -- Name: nd_protocol_reagent_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5880. --
  5881. CREATE INDEX nd_protocol_reagent_idx1 ON nd_protocol_reagent USING btree (nd_protocol_id);
  5882. --
  5883. -- Name: nd_protocol_reagent_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5884. --
  5885. CREATE INDEX nd_protocol_reagent_idx2 ON nd_protocol_reagent USING btree (reagent_id);
  5886. --
  5887. -- Name: nd_protocol_reagent_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5888. --
  5889. CREATE INDEX nd_protocol_reagent_idx3 ON nd_protocol_reagent USING btree (type_id);
  5890. --
  5891. -- Name: nd_protocolprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5892. --
  5893. CREATE INDEX nd_protocolprop_idx1 ON nd_protocolprop USING btree (nd_protocol_id);
  5894. --
  5895. -- Name: nd_protocolprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5896. --
  5897. CREATE INDEX nd_protocolprop_idx2 ON nd_protocolprop USING btree (type_id);
  5898. --
  5899. -- Name: nd_reagent_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5900. --
  5901. CREATE INDEX nd_reagent_idx1 ON nd_reagent USING btree (type_id);
  5902. --
  5903. -- Name: nd_reagent_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5904. --
  5905. CREATE INDEX nd_reagent_idx2 ON nd_reagent USING btree (feature_id);
  5906. --
  5907. -- Name: nd_reagent_relationship_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5908. --
  5909. CREATE INDEX nd_reagent_relationship_idx1 ON nd_reagent_relationship USING btree (subject_reagent_id);
  5910. --
  5911. -- Name: nd_reagent_relationship_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5912. --
  5913. CREATE INDEX nd_reagent_relationship_idx2 ON nd_reagent_relationship USING btree (object_reagent_id);
  5914. --
  5915. -- Name: nd_reagent_relationship_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5916. --
  5917. CREATE INDEX nd_reagent_relationship_idx3 ON nd_reagent_relationship USING btree (type_id);
  5918. --
  5919. -- Name: nd_reagentprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5920. --
  5921. CREATE INDEX nd_reagentprop_idx1 ON nd_reagentprop USING btree (nd_reagent_id);
  5922. --
  5923. -- Name: nd_reagentprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5924. --
  5925. CREATE INDEX nd_reagentprop_idx2 ON nd_reagentprop USING btree (type_id);
  5926. --
  5927. -- Name: organism_cvterm_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5928. --
  5929. CREATE INDEX organism_cvterm_idx1 ON organism_cvterm USING btree (organism_id);
  5930. --
  5931. -- Name: organism_cvterm_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5932. --
  5933. CREATE INDEX organism_cvterm_idx2 ON organism_cvterm USING btree (cvterm_id);
  5934. --
  5935. -- Name: organism_cvtermprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5936. --
  5937. CREATE INDEX organism_cvtermprop_idx1 ON organism_cvtermprop USING btree (organism_cvterm_id);
  5938. --
  5939. -- Name: organism_cvtermprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5940. --
  5941. CREATE INDEX organism_cvtermprop_idx2 ON organism_cvtermprop USING btree (type_id);
  5942. --
  5943. -- Name: organism_pub_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5944. --
  5945. CREATE INDEX organism_pub_idx1 ON organism_pub USING btree (organism_id);
  5946. --
  5947. -- Name: organism_pub_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5948. --
  5949. CREATE INDEX organism_pub_idx2 ON organism_pub USING btree (pub_id);
  5950. --
  5951. -- Name: organism_relationship_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5952. --
  5953. CREATE INDEX organism_relationship_idx1 ON organism_relationship USING btree (subject_id);
  5954. --
  5955. -- Name: organism_relationship_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5956. --
  5957. CREATE INDEX organism_relationship_idx2 ON organism_relationship USING btree (object_id);
  5958. --
  5959. -- Name: organism_relationship_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5960. --
  5961. CREATE INDEX organism_relationship_idx3 ON organism_relationship USING btree (type_id);
  5962. --
  5963. -- Name: organismprop_pub_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5964. --
  5965. CREATE INDEX organismprop_pub_idx1 ON organismprop_pub USING btree (organismprop_id);
  5966. --
  5967. -- Name: organismprop_pub_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5968. --
  5969. CREATE INDEX organismprop_pub_idx2 ON organismprop_pub USING btree (pub_id);
  5970. --
  5971. -- Name: phenotypeprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5972. --
  5973. CREATE INDEX phenotypeprop_idx1 ON phenotypeprop USING btree (phenotype_id);
  5974. --
  5975. -- Name: phenotypeprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5976. --
  5977. CREATE INDEX phenotypeprop_idx2 ON phenotypeprop USING btree (type_id);
  5978. --
  5979. -- Name: phylonode_parent_phylonode_id_idx; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5980. --
  5981. CREATE INDEX phylonode_parent_phylonode_id_idx ON phylonode USING btree (parent_phylonode_id);
  5982. --
  5983. -- Name: INDEX phylotreeprop_c1; Type: COMMENT; Schema: public; Owner: chado
  5984. --
  5985. COMMENT ON INDEX phylotreeprop_c1 IS 'For any one phylotree, multivalued
  5986. property-value pairs must be differentiated by rank.';
  5987. --
  5988. -- Name: phylotreeprop_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5989. --
  5990. CREATE INDEX phylotreeprop_idx1 ON phylotreeprop USING btree (phylotree_id);
  5991. --
  5992. -- Name: phylotreeprop_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5993. --
  5994. CREATE INDEX phylotreeprop_idx2 ON phylotreeprop USING btree (type_id);
  5995. --
  5996. -- Name: project_analysis_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  5997. --
  5998. CREATE INDEX project_analysis_idx1 ON project_analysis USING btree (project_id);
  5999. --
  6000. -- Name: project_analysis_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6001. --
  6002. CREATE INDEX project_analysis_idx2 ON project_analysis USING btree (analysis_id);
  6003. --
  6004. -- Name: project_dbxref_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6005. --
  6006. CREATE INDEX project_dbxref_idx1 ON project_dbxref USING btree (project_id);
  6007. --
  6008. -- Name: project_dbxref_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6009. --
  6010. CREATE INDEX project_dbxref_idx2 ON project_dbxref USING btree (dbxref_id);
  6011. --
  6012. -- Name: project_feature_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6013. --
  6014. CREATE INDEX project_feature_idx1 ON project_feature USING btree (feature_id);
  6015. --
  6016. -- Name: project_feature_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6017. --
  6018. CREATE INDEX project_feature_idx2 ON project_feature USING btree (project_id);
  6019. --
  6020. -- Name: project_stock_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6021. --
  6022. CREATE INDEX project_stock_idx1 ON project_stock USING btree (stock_id);
  6023. --
  6024. -- Name: project_stock_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6025. --
  6026. CREATE INDEX project_stock_idx2 ON project_stock USING btree (project_id);
  6027. --
  6028. -- Name: pubauthor_contact_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6029. --
  6030. CREATE INDEX pubauthor_contact_idx1 ON pubauthor USING btree (pubauthor_id);
  6031. --
  6032. -- Name: pubauthor_contact_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6033. --
  6034. CREATE INDEX pubauthor_contact_idx2 ON contact USING btree (contact_id);
  6035. --
  6036. -- Name: stock_feature_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6037. --
  6038. CREATE INDEX stock_feature_idx1 ON stock_feature USING btree (stock_feature_id);
  6039. --
  6040. -- Name: stock_feature_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6041. --
  6042. CREATE INDEX stock_feature_idx2 ON stock_feature USING btree (feature_id);
  6043. --
  6044. -- Name: stock_feature_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6045. --
  6046. CREATE INDEX stock_feature_idx3 ON stock_feature USING btree (stock_id);
  6047. --
  6048. -- Name: stock_feature_idx4; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6049. --
  6050. CREATE INDEX stock_feature_idx4 ON stock_feature USING btree (type_id);
  6051. --
  6052. -- Name: stock_featuremap_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6053. --
  6054. CREATE INDEX stock_featuremap_idx1 ON stock_featuremap USING btree (featuremap_id);
  6055. --
  6056. -- Name: stock_featuremap_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6057. --
  6058. CREATE INDEX stock_featuremap_idx2 ON stock_featuremap USING btree (stock_id);
  6059. --
  6060. -- Name: stock_featuremap_idx3; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6061. --
  6062. CREATE INDEX stock_featuremap_idx3 ON stock_featuremap USING btree (type_id);
  6063. --
  6064. -- Name: stock_library_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6065. --
  6066. CREATE INDEX stock_library_idx1 ON stock_library USING btree (library_id);
  6067. --
  6068. -- Name: stock_library_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6069. --
  6070. CREATE INDEX stock_library_idx2 ON stock_library USING btree (stock_id);
  6071. --
  6072. -- Name: stockcollection_db_idx1; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6073. --
  6074. CREATE INDEX stockcollection_db_idx1 ON stockcollection_db USING btree (stockcollection_id);
  6075. --
  6076. -- Name: stockcollection_db_idx2; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6077. --
  6078. CREATE INDEX stockcollection_db_idx2 ON stockcollection_db USING btree (db_id);
  6079. --
  6080. -- Name: analysis_cvterm_analysis_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6081. --
  6082. ALTER TABLE ONLY analysis_cvterm
  6083. ADD CONSTRAINT analysis_cvterm_analysis_id_fkey FOREIGN KEY (analysis_id) REFERENCES analysis(analysis_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6084. --
  6085. -- Name: analysis_cvterm_cvterm_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6086. --
  6087. ALTER TABLE ONLY analysis_cvterm
  6088. ADD CONSTRAINT analysis_cvterm_cvterm_id_fkey FOREIGN KEY (cvterm_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6089. --
  6090. -- Name: analysis_dbxref_analysis_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6091. --
  6092. ALTER TABLE ONLY analysis_dbxref
  6093. ADD CONSTRAINT analysis_dbxref_analysis_id_fkey FOREIGN KEY (analysis_id) REFERENCES analysis(analysis_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6094. --
  6095. -- Name: analysis_dbxref_dbxref_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6096. --
  6097. ALTER TABLE ONLY analysis_dbxref
  6098. ADD CONSTRAINT analysis_dbxref_dbxref_id_fkey FOREIGN KEY (dbxref_id) REFERENCES dbxref(dbxref_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6099. --
  6100. -- Name: analysis_pub_analysis_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6101. --
  6102. ALTER TABLE ONLY analysis_pub
  6103. ADD CONSTRAINT analysis_pub_analysis_id_fkey FOREIGN KEY (analysis_id) REFERENCES analysis(analysis_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6104. --
  6105. -- Name: analysis_pub_pub_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6106. --
  6107. ALTER TABLE ONLY analysis_pub
  6108. ADD CONSTRAINT analysis_pub_pub_id_fkey FOREIGN KEY (pub_id) REFERENCES pub(pub_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6109. --
  6110. -- Name: analysis_relationship_object_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6111. --
  6112. ALTER TABLE ONLY analysis_relationship
  6113. ADD CONSTRAINT analysis_relationship_object_id_fkey FOREIGN KEY (object_id) REFERENCES analysis(analysis_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6114. --
  6115. -- Name: analysis_relationship_subject_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6116. --
  6117. ALTER TABLE ONLY analysis_relationship
  6118. ADD CONSTRAINT analysis_relationship_subject_id_fkey FOREIGN KEY (subject_id) REFERENCES analysis(analysis_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6119. --
  6120. -- Name: analysis_relationship_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6121. --
  6122. ALTER TABLE ONLY analysis_relationship
  6123. ADD CONSTRAINT analysis_relationship_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6124. --
  6125. -- Name: contactprop_contact_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6126. --
  6127. ALTER TABLE ONLY contactprop
  6128. ADD CONSTRAINT contactprop_contact_id_fkey FOREIGN KEY (contact_id) REFERENCES contact(contact_id) ON DELETE CASCADE;
  6129. --
  6130. -- Name: contactprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6131. --
  6132. ALTER TABLE ONLY contactprop
  6133. ADD CONSTRAINT contactprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE;
  6134. --
  6135. -- Name: dbprop_db_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6136. --
  6137. ALTER TABLE ONLY dbprop
  6138. ADD CONSTRAINT dbprop_db_id_fkey FOREIGN KEY (db_id) REFERENCES db(db_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6139. --
  6140. -- Name: dbprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6141. --
  6142. ALTER TABLE ONLY dbprop
  6143. ADD CONSTRAINT dbprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6144. --
  6145. -- Name: feature_contact_contact_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6146. --
  6147. ALTER TABLE ONLY feature_contact
  6148. ADD CONSTRAINT feature_contact_contact_id_fkey FOREIGN KEY (contact_id) REFERENCES contact(contact_id) ON DELETE CASCADE;
  6149. --
  6150. -- Name: feature_contact_feature_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6151. --
  6152. ALTER TABLE ONLY feature_contact
  6153. ADD CONSTRAINT feature_contact_feature_id_fkey FOREIGN KEY (feature_id) REFERENCES feature(feature_id) ON DELETE CASCADE;
  6154. --
  6155. -- Name: featuremap_contact_contact_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6156. --
  6157. ALTER TABLE ONLY featuremap_contact
  6158. ADD CONSTRAINT featuremap_contact_contact_id_fkey FOREIGN KEY (contact_id) REFERENCES contact(contact_id) ON DELETE CASCADE;
  6159. --
  6160. -- Name: featuremap_contact_featuremap_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6161. --
  6162. ALTER TABLE ONLY featuremap_contact
  6163. ADD CONSTRAINT featuremap_contact_featuremap_id_fkey FOREIGN KEY (featuremap_id) REFERENCES featuremap(featuremap_id) ON DELETE CASCADE;
  6164. --
  6165. -- Name: featuremap_dbxref_dbxref_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6166. --
  6167. ALTER TABLE ONLY featuremap_dbxref
  6168. ADD CONSTRAINT featuremap_dbxref_dbxref_id_fkey FOREIGN KEY (dbxref_id) REFERENCES dbxref(dbxref_id) ON DELETE CASCADE;
  6169. --
  6170. -- Name: featuremap_dbxref_featuremap_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6171. --
  6172. ALTER TABLE ONLY featuremap_dbxref
  6173. ADD CONSTRAINT featuremap_dbxref_featuremap_id_fkey FOREIGN KEY (featuremap_id) REFERENCES featuremap(featuremap_id) ON DELETE CASCADE;
  6174. --
  6175. -- Name: featuremap_organism_featuremap_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6176. --
  6177. ALTER TABLE ONLY featuremap_organism
  6178. ADD CONSTRAINT featuremap_organism_featuremap_id_fkey FOREIGN KEY (featuremap_id) REFERENCES featuremap(featuremap_id) ON DELETE CASCADE;
  6179. --
  6180. -- Name: featuremap_organism_organism_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6181. --
  6182. ALTER TABLE ONLY featuremap_organism
  6183. ADD CONSTRAINT featuremap_organism_organism_id_fkey FOREIGN KEY (organism_id) REFERENCES organism(organism_id) ON DELETE CASCADE;
  6184. --
  6185. -- Name: featuremapprop_featuremap_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6186. --
  6187. ALTER TABLE ONLY featuremapprop
  6188. ADD CONSTRAINT featuremapprop_featuremap_id_fkey FOREIGN KEY (featuremap_id) REFERENCES featuremap(featuremap_id) ON DELETE CASCADE;
  6189. --
  6190. -- Name: featuremapprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6191. --
  6192. ALTER TABLE ONLY featuremapprop
  6193. ADD CONSTRAINT featuremapprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE;
  6194. --
  6195. -- Name: featureposprop_featurepos_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6196. --
  6197. ALTER TABLE ONLY featureposprop
  6198. ADD CONSTRAINT featureposprop_featurepos_id_fkey FOREIGN KEY (featurepos_id) REFERENCES featurepos(featurepos_id) ON DELETE CASCADE;
  6199. --
  6200. -- Name: featureposprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6201. --
  6202. ALTER TABLE ONLY featureposprop
  6203. ADD CONSTRAINT featureposprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE;
  6204. --
  6205. -- Name: library_contact_contact_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6206. --
  6207. ALTER TABLE ONLY library_contact
  6208. ADD CONSTRAINT library_contact_contact_id_fkey FOREIGN KEY (contact_id) REFERENCES contact(contact_id) ON DELETE CASCADE;
  6209. --
  6210. -- Name: library_contact_library_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6211. --
  6212. ALTER TABLE ONLY library_contact
  6213. ADD CONSTRAINT library_contact_library_id_fkey FOREIGN KEY (library_id) REFERENCES library(library_id) ON DELETE CASCADE;
  6214. --
  6215. -- Name: library_expression_expression_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6216. --
  6217. ALTER TABLE ONLY library_expression
  6218. ADD CONSTRAINT library_expression_expression_id_fkey FOREIGN KEY (expression_id) REFERENCES expression(expression_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6219. --
  6220. -- Name: library_expression_library_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6221. --
  6222. ALTER TABLE ONLY library_expression
  6223. ADD CONSTRAINT library_expression_library_id_fkey FOREIGN KEY (library_id) REFERENCES library(library_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6224. --
  6225. -- Name: library_expression_pub_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6226. --
  6227. ALTER TABLE ONLY library_expression
  6228. ADD CONSTRAINT library_expression_pub_id_fkey FOREIGN KEY (pub_id) REFERENCES pub(pub_id);
  6229. --
  6230. -- Name: library_expressionprop_library_expression_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6231. --
  6232. ALTER TABLE ONLY library_expressionprop
  6233. ADD CONSTRAINT library_expressionprop_library_expression_id_fkey FOREIGN KEY (library_expression_id) REFERENCES library_expression(library_expression_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6234. --
  6235. -- Name: library_expressionprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6236. --
  6237. ALTER TABLE ONLY library_expressionprop
  6238. ADD CONSTRAINT library_expressionprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id);
  6239. --
  6240. -- Name: library_featureprop_library_feature_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6241. --
  6242. ALTER TABLE ONLY library_featureprop
  6243. ADD CONSTRAINT library_featureprop_library_feature_id_fkey FOREIGN KEY (library_feature_id) REFERENCES library_feature(library_feature_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6244. --
  6245. -- Name: library_featureprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6246. --
  6247. ALTER TABLE ONLY library_featureprop
  6248. ADD CONSTRAINT library_featureprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id);
  6249. --
  6250. -- Name: library_relationship_object_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6251. --
  6252. ALTER TABLE ONLY library_relationship
  6253. ADD CONSTRAINT library_relationship_object_id_fkey FOREIGN KEY (object_id) REFERENCES library(library_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6254. --
  6255. -- Name: library_relationship_pub_library_relationship_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6256. --
  6257. ALTER TABLE ONLY library_relationship_pub
  6258. ADD CONSTRAINT library_relationship_pub_library_relationship_id_fkey FOREIGN KEY (library_relationship_id) REFERENCES library_relationship(library_relationship_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6259. --
  6260. -- Name: library_relationship_pub_pub_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6261. --
  6262. ALTER TABLE ONLY library_relationship_pub
  6263. ADD CONSTRAINT library_relationship_pub_pub_id_fkey FOREIGN KEY (pub_id) REFERENCES pub(pub_id);
  6264. --
  6265. -- Name: library_relationship_subject_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6266. --
  6267. ALTER TABLE ONLY library_relationship
  6268. ADD CONSTRAINT library_relationship_subject_id_fkey FOREIGN KEY (subject_id) REFERENCES library(library_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6269. --
  6270. -- Name: library_relationship_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6271. --
  6272. ALTER TABLE ONLY library_relationship
  6273. ADD CONSTRAINT library_relationship_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id);
  6274. --
  6275. -- Name: nd_experiment_analysis_analysis_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6276. --
  6277. ALTER TABLE ONLY nd_experiment_analysis
  6278. ADD CONSTRAINT nd_experiment_analysis_analysis_id_fkey FOREIGN KEY (analysis_id) REFERENCES analysis(analysis_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6279. --
  6280. -- Name: nd_experiment_analysis_nd_experiment_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6281. --
  6282. ALTER TABLE ONLY nd_experiment_analysis
  6283. ADD CONSTRAINT nd_experiment_analysis_nd_experiment_id_fkey FOREIGN KEY (nd_experiment_id) REFERENCES nd_experiment(nd_experiment_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6284. --
  6285. -- Name: nd_experiment_analysis_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6286. --
  6287. ALTER TABLE ONLY nd_experiment_analysis
  6288. ADD CONSTRAINT nd_experiment_analysis_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6289. --
  6290. -- Name: nd_reagent_feature_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6291. --
  6292. ALTER TABLE ONLY nd_reagent
  6293. ADD CONSTRAINT nd_reagent_feature_id_fkey FOREIGN KEY (feature_id) REFERENCES feature(feature_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6294. --
  6295. -- Name: organism_cvterm_cvterm_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6296. --
  6297. ALTER TABLE ONLY organism_cvterm
  6298. ADD CONSTRAINT organism_cvterm_cvterm_id_fkey FOREIGN KEY (cvterm_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6299. --
  6300. -- Name: organism_cvterm_organism_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6301. --
  6302. ALTER TABLE ONLY organism_cvterm
  6303. ADD CONSTRAINT organism_cvterm_organism_id_fkey FOREIGN KEY (organism_id) REFERENCES organism(organism_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6304. --
  6305. -- Name: organism_cvterm_pub_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6306. --
  6307. ALTER TABLE ONLY organism_cvterm
  6308. ADD CONSTRAINT organism_cvterm_pub_id_fkey FOREIGN KEY (pub_id) REFERENCES pub(pub_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6309. --
  6310. -- Name: organism_cvtermprop_organism_cvterm_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6311. --
  6312. ALTER TABLE ONLY organism_cvtermprop
  6313. ADD CONSTRAINT organism_cvtermprop_organism_cvterm_id_fkey FOREIGN KEY (organism_cvterm_id) REFERENCES organism_cvterm(organism_cvterm_id) ON DELETE CASCADE;
  6314. --
  6315. -- Name: organism_cvtermprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6316. --
  6317. ALTER TABLE ONLY organism_cvtermprop
  6318. ADD CONSTRAINT organism_cvtermprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6319. --
  6320. -- Name: organism_pub_organism_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6321. --
  6322. ALTER TABLE ONLY organism_pub
  6323. ADD CONSTRAINT organism_pub_organism_id_fkey FOREIGN KEY (organism_id) REFERENCES organism(organism_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6324. --
  6325. -- Name: organism_pub_pub_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6326. --
  6327. ALTER TABLE ONLY organism_pub
  6328. ADD CONSTRAINT organism_pub_pub_id_fkey FOREIGN KEY (pub_id) REFERENCES pub(pub_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6329. --
  6330. -- Name: organism_relationship_object_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6331. --
  6332. ALTER TABLE ONLY organism_relationship
  6333. ADD CONSTRAINT organism_relationship_object_id_fkey FOREIGN KEY (object_id) REFERENCES organism(organism_id) ON DELETE CASCADE;
  6334. --
  6335. -- Name: organism_relationship_subject_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6336. --
  6337. ALTER TABLE ONLY organism_relationship
  6338. ADD CONSTRAINT organism_relationship_subject_id_fkey FOREIGN KEY (subject_id) REFERENCES organism(organism_id) ON DELETE CASCADE;
  6339. --
  6340. -- Name: organism_relationship_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6341. --
  6342. ALTER TABLE ONLY organism_relationship
  6343. ADD CONSTRAINT organism_relationship_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE;
  6344. --
  6345. -- Name: organism_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6346. --
  6347. ALTER TABLE ONLY organism
  6348. ADD CONSTRAINT organism_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE;
  6349. --
  6350. -- Name: organismprop_pub_organismprop_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6351. --
  6352. ALTER TABLE ONLY organismprop_pub
  6353. ADD CONSTRAINT organismprop_pub_organismprop_id_fkey FOREIGN KEY (organismprop_id) REFERENCES organismprop(organismprop_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6354. --
  6355. -- Name: organismprop_pub_pub_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6356. --
  6357. ALTER TABLE ONLY organismprop_pub
  6358. ADD CONSTRAINT organismprop_pub_pub_id_fkey FOREIGN KEY (pub_id) REFERENCES pub(pub_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6359. --
  6360. -- Name: phenotypeprop_phenotype_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6361. --
  6362. ALTER TABLE ONLY phenotypeprop
  6363. ADD CONSTRAINT phenotypeprop_phenotype_id_fkey FOREIGN KEY (phenotype_id) REFERENCES phenotype(phenotype_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6364. --
  6365. -- Name: phenotypeprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6366. --
  6367. ALTER TABLE ONLY phenotypeprop
  6368. ADD CONSTRAINT phenotypeprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6369. --
  6370. -- Name: phylotreeprop_phylotree_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6371. --
  6372. ALTER TABLE ONLY phylotreeprop
  6373. ADD CONSTRAINT phylotreeprop_phylotree_id_fkey FOREIGN KEY (phylotree_id) REFERENCES phylotree(phylotree_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6374. --
  6375. -- Name: phylotreeprop_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6376. --
  6377. ALTER TABLE ONLY phylotreeprop
  6378. ADD CONSTRAINT phylotreeprop_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6379. --
  6380. -- Name: project_analysis_analysis_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6381. --
  6382. ALTER TABLE ONLY project_analysis
  6383. ADD CONSTRAINT project_analysis_analysis_id_fkey FOREIGN KEY (analysis_id) REFERENCES analysis(analysis_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6384. --
  6385. -- Name: project_analysis_project_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6386. --
  6387. ALTER TABLE ONLY project_analysis
  6388. ADD CONSTRAINT project_analysis_project_id_fkey FOREIGN KEY (project_id) REFERENCES project(project_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6389. --
  6390. -- Name: project_dbxref_dbxref_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6391. --
  6392. ALTER TABLE ONLY project_dbxref
  6393. ADD CONSTRAINT project_dbxref_dbxref_id_fkey FOREIGN KEY (dbxref_id) REFERENCES dbxref(dbxref_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6394. --
  6395. -- Name: project_dbxref_project_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6396. --
  6397. ALTER TABLE ONLY project_dbxref
  6398. ADD CONSTRAINT project_dbxref_project_id_fkey FOREIGN KEY (project_id) REFERENCES project(project_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6399. --
  6400. -- Name: project_feature_feature_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6401. --
  6402. ALTER TABLE ONLY project_feature
  6403. ADD CONSTRAINT project_feature_feature_id_fkey FOREIGN KEY (feature_id) REFERENCES feature(feature_id) ON DELETE CASCADE;
  6404. --
  6405. -- Name: project_feature_project_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6406. --
  6407. ALTER TABLE ONLY project_feature
  6408. ADD CONSTRAINT project_feature_project_id_fkey FOREIGN KEY (project_id) REFERENCES project(project_id) ON DELETE CASCADE;
  6409. --
  6410. -- Name: project_stock_project_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6411. --
  6412. ALTER TABLE ONLY project_stock
  6413. ADD CONSTRAINT project_stock_project_id_fkey FOREIGN KEY (project_id) REFERENCES project(project_id) ON DELETE CASCADE;
  6414. --
  6415. -- Name: project_stock_stock_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6416. --
  6417. ALTER TABLE ONLY project_stock
  6418. ADD CONSTRAINT project_stock_stock_id_fkey FOREIGN KEY (stock_id) REFERENCES stock(stock_id) ON DELETE CASCADE;
  6419. --
  6420. -- Name: pubauthor_contact_contact_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6421. --
  6422. ALTER TABLE ONLY pubauthor_contact
  6423. ADD CONSTRAINT pubauthor_contact_contact_id_fkey FOREIGN KEY (contact_id) REFERENCES contact(contact_id) ON DELETE CASCADE;
  6424. --
  6425. -- Name: pubauthor_contact_pubauthor_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6426. --
  6427. ALTER TABLE ONLY pubauthor_contact
  6428. ADD CONSTRAINT pubauthor_contact_pubauthor_id_fkey FOREIGN KEY (pubauthor_id) REFERENCES pubauthor(pubauthor_id) ON DELETE CASCADE;
  6429. --
  6430. -- Name: stock_feature_feature_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6431. --
  6432. ALTER TABLE ONLY stock_feature
  6433. ADD CONSTRAINT stock_feature_feature_id_fkey FOREIGN KEY (feature_id) REFERENCES feature(feature_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6434. --
  6435. -- Name: stock_feature_stock_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6436. --
  6437. ALTER TABLE ONLY stock_feature
  6438. ADD CONSTRAINT stock_feature_stock_id_fkey FOREIGN KEY (stock_id) REFERENCES stock(stock_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6439. --
  6440. -- Name: stock_feature_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6441. --
  6442. ALTER TABLE ONLY stock_feature
  6443. ADD CONSTRAINT stock_feature_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6444. --
  6445. -- Name: stock_featuremap_featuremap_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6446. --
  6447. ALTER TABLE ONLY stock_featuremap
  6448. ADD CONSTRAINT stock_featuremap_featuremap_id_fkey FOREIGN KEY (featuremap_id) REFERENCES featuremap(featuremap_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6449. --
  6450. -- Name: stock_featuremap_stock_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6451. --
  6452. ALTER TABLE ONLY stock_featuremap
  6453. ADD CONSTRAINT stock_featuremap_stock_id_fkey FOREIGN KEY (stock_id) REFERENCES stock(stock_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6454. --
  6455. -- Name: stock_featuremap_type_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6456. --
  6457. ALTER TABLE ONLY stock_featuremap
  6458. ADD CONSTRAINT stock_featuremap_type_id_fkey FOREIGN KEY (type_id) REFERENCES cvterm(cvterm_id) ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED;
  6459. --
  6460. -- Name: stock_library_library_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6461. --
  6462. ALTER TABLE ONLY stock_library
  6463. ADD CONSTRAINT stock_library_library_id_fkey FOREIGN KEY (library_id) REFERENCES library(library_id) ON DELETE CASCADE;
  6464. --
  6465. -- Name: stock_library_stock_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6466. --
  6467. ALTER TABLE ONLY stock_library
  6468. ADD CONSTRAINT stock_library_stock_id_fkey FOREIGN KEY (stock_id) REFERENCES stock(stock_id) ON DELETE CASCADE;
  6469. --
  6470. -- Name: stockcollection_db_db_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6471. --
  6472. ALTER TABLE ONLY stockcollection_db
  6473. ADD CONSTRAINT stockcollection_db_db_id_fkey FOREIGN KEY (db_id) REFERENCES db(db_id) ON DELETE CASCADE;
  6474. --
  6475. -- Name: stockcollection_db_stockcollection_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: chado
  6476. --
  6477. ALTER TABLE ONLY stockcollection_db
  6478. ADD CONSTRAINT stockcollection_db_stockcollection_id_fkey FOREIGN KEY (stockcollection_id) REFERENCES stockcollection(stockcollection_id) ON DELETE CASCADE;
  6479. --
  6480. -- Name: binloc_boxrange; Type: INDEX; Schema: public; Owner: chado; Tablespace:
  6481. --
  6482. CREATE INDEX binloc_boxrange ON featureloc USING gist (boxrange(fmin, fmax));
  6483. SET search_path = so,public,pg_catalog;
  6484. --
  6485. -- Name: mrna; Type: VIEW; Schema: so; Owner: -
  6486. --
  6487. CREATE VIEW mrna AS
  6488. SELECT feature.feature_id AS mrna_id,
  6489. feature.feature_id,
  6490. feature.dbxref_id,
  6491. feature.organism_id,
  6492. feature.name,
  6493. feature.uniquename,
  6494. feature.residues,
  6495. feature.seqlen,
  6496. feature.md5checksum,
  6497. feature.type_id,
  6498. feature.is_analysis,
  6499. feature.is_obsolete,
  6500. feature.timeaccessioned,
  6501. feature.timelastmodified
  6502. FROM (feature
  6503. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6504. WHERE (((((((((((((((((((cvterm.name)::text = 'mRNA_with_frameshift'::text) OR ((cvterm.name)::text = 'monocistronic_mRNA'::text)) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'exemplar_mRNA'::text)) OR ((cvterm.name)::text = 'capped_mRNA'::text)) OR ((cvterm.name)::text = 'polyadenylated_mRNA'::text)) OR ((cvterm.name)::text = 'trans_spliced_mRNA'::text)) OR ((cvterm.name)::text = 'edited_mRNA'::text)) OR ((cvterm.name)::text = 'consensus_mRNA'::text)) OR ((cvterm.name)::text = 'recoded_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_2_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_codon_redefinition'::text)) OR ((cvterm.name)::text = 'mRNA'::text));
  6505. --
  6506. -- Name: a_box; Type: VIEW; Schema: so; Owner: -
  6507. --
  6508. CREATE VIEW a_box AS
  6509. SELECT feature.feature_id AS a_box_id,
  6510. feature.feature_id,
  6511. feature.dbxref_id,
  6512. feature.organism_id,
  6513. feature.name,
  6514. feature.uniquename,
  6515. feature.residues,
  6516. feature.seqlen,
  6517. feature.md5checksum,
  6518. feature.type_id,
  6519. feature.is_analysis,
  6520. feature.is_obsolete,
  6521. feature.timeaccessioned,
  6522. feature.timelastmodified
  6523. FROM (feature
  6524. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6525. WHERE ((((cvterm.name)::text = 'A_box_type_1'::text) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'A_box'::text));
  6526. --
  6527. -- Name: a_box_type_1; Type: VIEW; Schema: so; Owner: -
  6528. --
  6529. CREATE VIEW a_box_type_1 AS
  6530. SELECT feature.feature_id AS a_box_type_1_id,
  6531. feature.feature_id,
  6532. feature.dbxref_id,
  6533. feature.organism_id,
  6534. feature.name,
  6535. feature.uniquename,
  6536. feature.residues,
  6537. feature.seqlen,
  6538. feature.md5checksum,
  6539. feature.type_id,
  6540. feature.is_analysis,
  6541. feature.is_obsolete,
  6542. feature.timeaccessioned,
  6543. feature.timelastmodified
  6544. FROM (feature
  6545. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6546. WHERE ((cvterm.name)::text = 'A_box_type_1'::text);
  6547. --
  6548. -- Name: a_box_type_2; Type: VIEW; Schema: so; Owner: -
  6549. --
  6550. CREATE VIEW a_box_type_2 AS
  6551. SELECT feature.feature_id AS a_box_type_2_id,
  6552. feature.feature_id,
  6553. feature.dbxref_id,
  6554. feature.organism_id,
  6555. feature.name,
  6556. feature.uniquename,
  6557. feature.residues,
  6558. feature.seqlen,
  6559. feature.md5checksum,
  6560. feature.type_id,
  6561. feature.is_analysis,
  6562. feature.is_obsolete,
  6563. feature.timeaccessioned,
  6564. feature.timelastmodified
  6565. FROM (feature
  6566. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6567. WHERE ((cvterm.name)::text = 'A_box_type_2'::text);
  6568. --
  6569. -- Name: a_minor_rna_motif; Type: VIEW; Schema: so; Owner: -
  6570. --
  6571. CREATE VIEW a_minor_rna_motif AS
  6572. SELECT feature.feature_id AS a_minor_rna_motif_id,
  6573. feature.feature_id,
  6574. feature.dbxref_id,
  6575. feature.organism_id,
  6576. feature.name,
  6577. feature.uniquename,
  6578. feature.residues,
  6579. feature.seqlen,
  6580. feature.md5checksum,
  6581. feature.type_id,
  6582. feature.is_analysis,
  6583. feature.is_obsolete,
  6584. feature.timeaccessioned,
  6585. feature.timelastmodified
  6586. FROM (feature
  6587. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6588. WHERE ((cvterm.name)::text = 'A_minor_RNA_motif'::text);
  6589. --
  6590. -- Name: a_to_c_transversion; Type: VIEW; Schema: so; Owner: -
  6591. --
  6592. CREATE VIEW a_to_c_transversion AS
  6593. SELECT feature.feature_id AS a_to_c_transversion_id,
  6594. feature.feature_id,
  6595. feature.dbxref_id,
  6596. feature.organism_id,
  6597. feature.name,
  6598. feature.uniquename,
  6599. feature.residues,
  6600. feature.seqlen,
  6601. feature.md5checksum,
  6602. feature.type_id,
  6603. feature.is_analysis,
  6604. feature.is_obsolete,
  6605. feature.timeaccessioned,
  6606. feature.timelastmodified
  6607. FROM (feature
  6608. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6609. WHERE ((cvterm.name)::text = 'A_to_C_transversion'::text);
  6610. --
  6611. -- Name: a_to_g_transition; Type: VIEW; Schema: so; Owner: -
  6612. --
  6613. CREATE VIEW a_to_g_transition AS
  6614. SELECT feature.feature_id AS a_to_g_transition_id,
  6615. feature.feature_id,
  6616. feature.dbxref_id,
  6617. feature.organism_id,
  6618. feature.name,
  6619. feature.uniquename,
  6620. feature.residues,
  6621. feature.seqlen,
  6622. feature.md5checksum,
  6623. feature.type_id,
  6624. feature.is_analysis,
  6625. feature.is_obsolete,
  6626. feature.timeaccessioned,
  6627. feature.timelastmodified
  6628. FROM (feature
  6629. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6630. WHERE ((cvterm.name)::text = 'A_to_G_transition'::text);
  6631. --
  6632. -- Name: a_to_t_transversion; Type: VIEW; Schema: so; Owner: -
  6633. --
  6634. CREATE VIEW a_to_t_transversion AS
  6635. SELECT feature.feature_id AS a_to_t_transversion_id,
  6636. feature.feature_id,
  6637. feature.dbxref_id,
  6638. feature.organism_id,
  6639. feature.name,
  6640. feature.uniquename,
  6641. feature.residues,
  6642. feature.seqlen,
  6643. feature.md5checksum,
  6644. feature.type_id,
  6645. feature.is_analysis,
  6646. feature.is_obsolete,
  6647. feature.timeaccessioned,
  6648. feature.timelastmodified
  6649. FROM (feature
  6650. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6651. WHERE ((cvterm.name)::text = 'A_to_T_transversion'::text);
  6652. --
  6653. -- Name: aberrant_processed_transcript; Type: VIEW; Schema: so; Owner: -
  6654. --
  6655. CREATE VIEW aberrant_processed_transcript AS
  6656. SELECT feature.feature_id AS aberrant_processed_transcript_id,
  6657. feature.feature_id,
  6658. feature.dbxref_id,
  6659. feature.organism_id,
  6660. feature.name,
  6661. feature.uniquename,
  6662. feature.residues,
  6663. feature.seqlen,
  6664. feature.md5checksum,
  6665. feature.type_id,
  6666. feature.is_analysis,
  6667. feature.is_obsolete,
  6668. feature.timeaccessioned,
  6669. feature.timelastmodified
  6670. FROM (feature
  6671. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6672. WHERE ((cvterm.name)::text = 'aberrant_processed_transcript'::text);
  6673. --
  6674. -- Name: active_peptide; Type: VIEW; Schema: so; Owner: -
  6675. --
  6676. CREATE VIEW active_peptide AS
  6677. SELECT feature.feature_id AS active_peptide_id,
  6678. feature.feature_id,
  6679. feature.dbxref_id,
  6680. feature.organism_id,
  6681. feature.name,
  6682. feature.uniquename,
  6683. feature.residues,
  6684. feature.seqlen,
  6685. feature.md5checksum,
  6686. feature.type_id,
  6687. feature.is_analysis,
  6688. feature.is_obsolete,
  6689. feature.timeaccessioned,
  6690. feature.timelastmodified
  6691. FROM (feature
  6692. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6693. WHERE ((cvterm.name)::text = 'active_peptide'::text);
  6694. --
  6695. -- Name: adaptive_island; Type: VIEW; Schema: so; Owner: -
  6696. --
  6697. CREATE VIEW adaptive_island AS
  6698. SELECT feature.feature_id AS adaptive_island_id,
  6699. feature.feature_id,
  6700. feature.dbxref_id,
  6701. feature.organism_id,
  6702. feature.name,
  6703. feature.uniquename,
  6704. feature.residues,
  6705. feature.seqlen,
  6706. feature.md5checksum,
  6707. feature.type_id,
  6708. feature.is_analysis,
  6709. feature.is_obsolete,
  6710. feature.timeaccessioned,
  6711. feature.timelastmodified
  6712. FROM (feature
  6713. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6714. WHERE ((cvterm.name)::text = 'adaptive_island'::text);
  6715. --
  6716. -- Name: alanine; Type: VIEW; Schema: so; Owner: -
  6717. --
  6718. CREATE VIEW alanine AS
  6719. SELECT feature.feature_id AS alanine_id,
  6720. feature.feature_id,
  6721. feature.dbxref_id,
  6722. feature.organism_id,
  6723. feature.name,
  6724. feature.uniquename,
  6725. feature.residues,
  6726. feature.seqlen,
  6727. feature.md5checksum,
  6728. feature.type_id,
  6729. feature.is_analysis,
  6730. feature.is_obsolete,
  6731. feature.timeaccessioned,
  6732. feature.timelastmodified
  6733. FROM (feature
  6734. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6735. WHERE ((cvterm.name)::text = 'alanine'::text);
  6736. --
  6737. -- Name: alanine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  6738. --
  6739. CREATE VIEW alanine_trna_primary_transcript AS
  6740. SELECT feature.feature_id AS alanine_trna_primary_transcript_id,
  6741. feature.feature_id,
  6742. feature.dbxref_id,
  6743. feature.organism_id,
  6744. feature.name,
  6745. feature.uniquename,
  6746. feature.residues,
  6747. feature.seqlen,
  6748. feature.md5checksum,
  6749. feature.type_id,
  6750. feature.is_analysis,
  6751. feature.is_obsolete,
  6752. feature.timeaccessioned,
  6753. feature.timelastmodified
  6754. FROM (feature
  6755. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6756. WHERE ((cvterm.name)::text = 'alanine_tRNA_primary_transcript'::text);
  6757. --
  6758. -- Name: alanyl_trna; Type: VIEW; Schema: so; Owner: -
  6759. --
  6760. CREATE VIEW alanyl_trna AS
  6761. SELECT feature.feature_id AS alanyl_trna_id,
  6762. feature.feature_id,
  6763. feature.dbxref_id,
  6764. feature.organism_id,
  6765. feature.name,
  6766. feature.uniquename,
  6767. feature.residues,
  6768. feature.seqlen,
  6769. feature.md5checksum,
  6770. feature.type_id,
  6771. feature.is_analysis,
  6772. feature.is_obsolete,
  6773. feature.timeaccessioned,
  6774. feature.timelastmodified
  6775. FROM (feature
  6776. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6777. WHERE ((cvterm.name)::text = 'alanyl_tRNA'::text);
  6778. --
  6779. -- Name: allele; Type: VIEW; Schema: so; Owner: -
  6780. --
  6781. CREATE VIEW allele AS
  6782. SELECT feature.feature_id AS allele_id,
  6783. feature.feature_id,
  6784. feature.dbxref_id,
  6785. feature.organism_id,
  6786. feature.name,
  6787. feature.uniquename,
  6788. feature.residues,
  6789. feature.seqlen,
  6790. feature.md5checksum,
  6791. feature.type_id,
  6792. feature.is_analysis,
  6793. feature.is_obsolete,
  6794. feature.timeaccessioned,
  6795. feature.timelastmodified
  6796. FROM (feature
  6797. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6798. WHERE (((cvterm.name)::text = 'polymorphic_sequence_variant'::text) OR ((cvterm.name)::text = 'allele'::text));
  6799. --
  6800. -- Name: allelically_excluded; Type: VIEW; Schema: so; Owner: -
  6801. --
  6802. CREATE VIEW allelically_excluded AS
  6803. SELECT feature.feature_id AS allelically_excluded_id,
  6804. feature.feature_id,
  6805. feature.dbxref_id,
  6806. feature.organism_id,
  6807. feature.name,
  6808. feature.uniquename,
  6809. feature.residues,
  6810. feature.seqlen,
  6811. feature.md5checksum,
  6812. feature.type_id,
  6813. feature.is_analysis,
  6814. feature.is_obsolete,
  6815. feature.timeaccessioned,
  6816. feature.timelastmodified
  6817. FROM (feature
  6818. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6819. WHERE ((cvterm.name)::text = 'allelically_excluded'::text);
  6820. --
  6821. -- Name: allelically_excluded_gene; Type: VIEW; Schema: so; Owner: -
  6822. --
  6823. CREATE VIEW allelically_excluded_gene AS
  6824. SELECT feature.feature_id AS allelically_excluded_gene_id,
  6825. feature.feature_id,
  6826. feature.dbxref_id,
  6827. feature.organism_id,
  6828. feature.name,
  6829. feature.uniquename,
  6830. feature.residues,
  6831. feature.seqlen,
  6832. feature.md5checksum,
  6833. feature.type_id,
  6834. feature.is_analysis,
  6835. feature.is_obsolete,
  6836. feature.timeaccessioned,
  6837. feature.timelastmodified
  6838. FROM (feature
  6839. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6840. WHERE ((cvterm.name)::text = 'allelically_excluded_gene'::text);
  6841. --
  6842. -- Name: allopolyploid; Type: VIEW; Schema: so; Owner: -
  6843. --
  6844. CREATE VIEW allopolyploid AS
  6845. SELECT feature.feature_id AS allopolyploid_id,
  6846. feature.feature_id,
  6847. feature.dbxref_id,
  6848. feature.organism_id,
  6849. feature.name,
  6850. feature.uniquename,
  6851. feature.residues,
  6852. feature.seqlen,
  6853. feature.md5checksum,
  6854. feature.type_id,
  6855. feature.is_analysis,
  6856. feature.is_obsolete,
  6857. feature.timeaccessioned,
  6858. feature.timelastmodified
  6859. FROM (feature
  6860. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6861. WHERE ((cvterm.name)::text = 'allopolyploid'::text);
  6862. --
  6863. -- Name: alpha_beta_motif; Type: VIEW; Schema: so; Owner: -
  6864. --
  6865. CREATE VIEW alpha_beta_motif AS
  6866. SELECT feature.feature_id AS alpha_beta_motif_id,
  6867. feature.feature_id,
  6868. feature.dbxref_id,
  6869. feature.organism_id,
  6870. feature.name,
  6871. feature.uniquename,
  6872. feature.residues,
  6873. feature.seqlen,
  6874. feature.md5checksum,
  6875. feature.type_id,
  6876. feature.is_analysis,
  6877. feature.is_obsolete,
  6878. feature.timeaccessioned,
  6879. feature.timelastmodified
  6880. FROM (feature
  6881. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6882. WHERE ((cvterm.name)::text = 'alpha_beta_motif'::text);
  6883. --
  6884. -- Name: alpha_helix; Type: VIEW; Schema: so; Owner: -
  6885. --
  6886. CREATE VIEW alpha_helix AS
  6887. SELECT feature.feature_id AS alpha_helix_id,
  6888. feature.feature_id,
  6889. feature.dbxref_id,
  6890. feature.organism_id,
  6891. feature.name,
  6892. feature.uniquename,
  6893. feature.residues,
  6894. feature.seqlen,
  6895. feature.md5checksum,
  6896. feature.type_id,
  6897. feature.is_analysis,
  6898. feature.is_obsolete,
  6899. feature.timeaccessioned,
  6900. feature.timelastmodified
  6901. FROM (feature
  6902. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6903. WHERE ((cvterm.name)::text = 'alpha_helix'::text);
  6904. --
  6905. -- Name: alteration_attribute; Type: VIEW; Schema: so; Owner: -
  6906. --
  6907. CREATE VIEW alteration_attribute AS
  6908. SELECT feature.feature_id AS alteration_attribute_id,
  6909. feature.feature_id,
  6910. feature.dbxref_id,
  6911. feature.organism_id,
  6912. feature.name,
  6913. feature.uniquename,
  6914. feature.residues,
  6915. feature.seqlen,
  6916. feature.md5checksum,
  6917. feature.type_id,
  6918. feature.is_analysis,
  6919. feature.is_obsolete,
  6920. feature.timeaccessioned,
  6921. feature.timelastmodified
  6922. FROM (feature
  6923. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6924. WHERE (((((((((((((((((cvterm.name)::text = 'chromosomal_variation_attribute'::text) OR ((cvterm.name)::text = 'insertion_attribute'::text)) OR ((cvterm.name)::text = 'inversion_attribute'::text)) OR ((cvterm.name)::text = 'translocaton_attribute'::text)) OR ((cvterm.name)::text = 'duplication_attribute'::text)) OR ((cvterm.name)::text = 'intrachromosomal'::text)) OR ((cvterm.name)::text = 'interchromosomal'::text)) OR ((cvterm.name)::text = 'tandem'::text)) OR ((cvterm.name)::text = 'direct'::text)) OR ((cvterm.name)::text = 'inverted'::text)) OR ((cvterm.name)::text = 'pericentric'::text)) OR ((cvterm.name)::text = 'paracentric'::text)) OR ((cvterm.name)::text = 'reciprocal'::text)) OR ((cvterm.name)::text = 'insertional'::text)) OR ((cvterm.name)::text = 'free'::text)) OR ((cvterm.name)::text = 'alteration_attribute'::text));
  6925. --
  6926. -- Name: alternate_sequence_site; Type: VIEW; Schema: so; Owner: -
  6927. --
  6928. CREATE VIEW alternate_sequence_site AS
  6929. SELECT feature.feature_id AS alternate_sequence_site_id,
  6930. feature.feature_id,
  6931. feature.dbxref_id,
  6932. feature.organism_id,
  6933. feature.name,
  6934. feature.uniquename,
  6935. feature.residues,
  6936. feature.seqlen,
  6937. feature.md5checksum,
  6938. feature.type_id,
  6939. feature.is_analysis,
  6940. feature.is_obsolete,
  6941. feature.timeaccessioned,
  6942. feature.timelastmodified
  6943. FROM (feature
  6944. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6945. WHERE ((cvterm.name)::text = 'alternate_sequence_site'::text);
  6946. --
  6947. -- Name: alternatively_spliced; Type: VIEW; Schema: so; Owner: -
  6948. --
  6949. CREATE VIEW alternatively_spliced AS
  6950. SELECT feature.feature_id AS alternatively_spliced_id,
  6951. feature.feature_id,
  6952. feature.dbxref_id,
  6953. feature.organism_id,
  6954. feature.name,
  6955. feature.uniquename,
  6956. feature.residues,
  6957. feature.seqlen,
  6958. feature.md5checksum,
  6959. feature.type_id,
  6960. feature.is_analysis,
  6961. feature.is_obsolete,
  6962. feature.timeaccessioned,
  6963. feature.timelastmodified
  6964. FROM (feature
  6965. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6966. WHERE ((cvterm.name)::text = 'alternatively_spliced'::text);
  6967. --
  6968. -- Name: alternatively_spliced_transcript; Type: VIEW; Schema: so; Owner: -
  6969. --
  6970. CREATE VIEW alternatively_spliced_transcript AS
  6971. SELECT feature.feature_id AS alternatively_spliced_transcript_id,
  6972. feature.feature_id,
  6973. feature.dbxref_id,
  6974. feature.organism_id,
  6975. feature.name,
  6976. feature.uniquename,
  6977. feature.residues,
  6978. feature.seqlen,
  6979. feature.md5checksum,
  6980. feature.type_id,
  6981. feature.is_analysis,
  6982. feature.is_obsolete,
  6983. feature.timeaccessioned,
  6984. feature.timelastmodified
  6985. FROM (feature
  6986. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  6987. WHERE ((cvterm.name)::text = 'alternatively_spliced_transcript'::text);
  6988. --
  6989. -- Name: ambisense_ssrna_viral_sequence; Type: VIEW; Schema: so; Owner: -
  6990. --
  6991. CREATE VIEW ambisense_ssrna_viral_sequence AS
  6992. SELECT feature.feature_id AS ambisense_ssrna_viral_sequence_id,
  6993. feature.feature_id,
  6994. feature.dbxref_id,
  6995. feature.organism_id,
  6996. feature.name,
  6997. feature.uniquename,
  6998. feature.residues,
  6999. feature.seqlen,
  7000. feature.md5checksum,
  7001. feature.type_id,
  7002. feature.is_analysis,
  7003. feature.is_obsolete,
  7004. feature.timeaccessioned,
  7005. feature.timelastmodified
  7006. FROM (feature
  7007. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7008. WHERE ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text);
  7009. --
  7010. -- Name: amino_acid; Type: VIEW; Schema: so; Owner: -
  7011. --
  7012. CREATE VIEW amino_acid AS
  7013. SELECT feature.feature_id AS amino_acid_id,
  7014. feature.feature_id,
  7015. feature.dbxref_id,
  7016. feature.organism_id,
  7017. feature.name,
  7018. feature.uniquename,
  7019. feature.residues,
  7020. feature.seqlen,
  7021. feature.md5checksum,
  7022. feature.type_id,
  7023. feature.is_analysis,
  7024. feature.is_obsolete,
  7025. feature.timeaccessioned,
  7026. feature.timelastmodified
  7027. FROM (feature
  7028. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7029. WHERE (((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'catalytic_residue'::text) OR ((cvterm.name)::text = 'modified_amino_acid_feature'::text)) OR ((cvterm.name)::text = 'alanine'::text)) OR ((cvterm.name)::text = 'valine'::text)) OR ((cvterm.name)::text = 'leucine'::text)) OR ((cvterm.name)::text = 'isoleucine'::text)) OR ((cvterm.name)::text = 'proline'::text)) OR ((cvterm.name)::text = 'tryptophan'::text)) OR ((cvterm.name)::text = 'phenylalanine'::text)) OR ((cvterm.name)::text = 'methionine'::text)) OR ((cvterm.name)::text = 'glycine'::text)) OR ((cvterm.name)::text = 'serine'::text)) OR ((cvterm.name)::text = 'threonine'::text)) OR ((cvterm.name)::text = 'tyrosine'::text)) OR ((cvterm.name)::text = 'cysteine'::text)) OR ((cvterm.name)::text = 'glutamine'::text)) OR ((cvterm.name)::text = 'asparagine'::text)) OR ((cvterm.name)::text = 'lysine'::text)) OR ((cvterm.name)::text = 'arginine'::text)) OR ((cvterm.name)::text = 'histidine'::text)) OR ((cvterm.name)::text = 'aspartic_acid'::text)) OR ((cvterm.name)::text = 'glutamic_acid'::text)) OR ((cvterm.name)::text = 'selenocysteine'::text)) OR ((cvterm.name)::text = 'pyrrolysine'::text)) OR ((cvterm.name)::text = 'modified_glycine'::text)) OR ((cvterm.name)::text = 'modified_L_alanine'::text)) OR ((cvterm.name)::text = 'modified_L_asparagine'::text)) OR ((cvterm.name)::text = 'modified_L_aspartic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_cysteine'::text)) OR ((cvterm.name)::text = 'modified_L_glutamic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_threonine'::text)) OR ((cvterm.name)::text = 'modified_L_tryptophan'::text)) OR ((cvterm.name)::text = 'modified_L_glutamine'::text)) OR ((cvterm.name)::text = 'modified_L_methionine'::text)) OR ((cvterm.name)::text = 'modified_L_isoleucine'::text)) OR ((cvterm.name)::text = 'modified_L_phenylalanine'::text)) OR ((cvterm.name)::text = 'modified_L_histidine'::text)) OR ((cvterm.name)::text = 'modified_L_serine'::text)) OR ((cvterm.name)::text = 'modified_L_lysine'::text)) OR ((cvterm.name)::text = 'modified_L_leucine'::text)) OR ((cvterm.name)::text = 'modified_L_selenocysteine'::text)) OR ((cvterm.name)::text = 'modified_L_valine'::text)) OR ((cvterm.name)::text = 'modified_L_proline'::text)) OR ((cvterm.name)::text = 'modified_L_tyrosine'::text)) OR ((cvterm.name)::text = 'modified_L_arginine'::text)) OR ((cvterm.name)::text = 'amino_acid'::text));
  7030. --
  7031. -- Name: amino_acid_deletion; Type: VIEW; Schema: so; Owner: -
  7032. --
  7033. CREATE VIEW amino_acid_deletion AS
  7034. SELECT feature.feature_id AS amino_acid_deletion_id,
  7035. feature.feature_id,
  7036. feature.dbxref_id,
  7037. feature.organism_id,
  7038. feature.name,
  7039. feature.uniquename,
  7040. feature.residues,
  7041. feature.seqlen,
  7042. feature.md5checksum,
  7043. feature.type_id,
  7044. feature.is_analysis,
  7045. feature.is_obsolete,
  7046. feature.timeaccessioned,
  7047. feature.timelastmodified
  7048. FROM (feature
  7049. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7050. WHERE ((cvterm.name)::text = 'amino_acid_deletion'::text);
  7051. --
  7052. -- Name: amino_acid_insertion; Type: VIEW; Schema: so; Owner: -
  7053. --
  7054. CREATE VIEW amino_acid_insertion AS
  7055. SELECT feature.feature_id AS amino_acid_insertion_id,
  7056. feature.feature_id,
  7057. feature.dbxref_id,
  7058. feature.organism_id,
  7059. feature.name,
  7060. feature.uniquename,
  7061. feature.residues,
  7062. feature.seqlen,
  7063. feature.md5checksum,
  7064. feature.type_id,
  7065. feature.is_analysis,
  7066. feature.is_obsolete,
  7067. feature.timeaccessioned,
  7068. feature.timelastmodified
  7069. FROM (feature
  7070. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7071. WHERE ((cvterm.name)::text = 'amino_acid_insertion'::text);
  7072. --
  7073. -- Name: amino_acid_substitution; Type: VIEW; Schema: so; Owner: -
  7074. --
  7075. CREATE VIEW amino_acid_substitution AS
  7076. SELECT feature.feature_id AS amino_acid_substitution_id,
  7077. feature.feature_id,
  7078. feature.dbxref_id,
  7079. feature.organism_id,
  7080. feature.name,
  7081. feature.uniquename,
  7082. feature.residues,
  7083. feature.seqlen,
  7084. feature.md5checksum,
  7085. feature.type_id,
  7086. feature.is_analysis,
  7087. feature.is_obsolete,
  7088. feature.timeaccessioned,
  7089. feature.timelastmodified
  7090. FROM (feature
  7091. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7092. WHERE ((((cvterm.name)::text = 'conservative_amino_acid_substitution'::text) OR ((cvterm.name)::text = 'non_conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'amino_acid_substitution'::text));
  7093. --
  7094. -- Name: amplification_origin; Type: VIEW; Schema: so; Owner: -
  7095. --
  7096. CREATE VIEW amplification_origin AS
  7097. SELECT feature.feature_id AS amplification_origin_id,
  7098. feature.feature_id,
  7099. feature.dbxref_id,
  7100. feature.organism_id,
  7101. feature.name,
  7102. feature.uniquename,
  7103. feature.residues,
  7104. feature.seqlen,
  7105. feature.md5checksum,
  7106. feature.type_id,
  7107. feature.is_analysis,
  7108. feature.is_obsolete,
  7109. feature.timeaccessioned,
  7110. feature.timelastmodified
  7111. FROM (feature
  7112. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7113. WHERE ((cvterm.name)::text = 'amplification_origin'::text);
  7114. --
  7115. -- Name: anchor_binding_site; Type: VIEW; Schema: so; Owner: -
  7116. --
  7117. CREATE VIEW anchor_binding_site AS
  7118. SELECT feature.feature_id AS anchor_binding_site_id,
  7119. feature.feature_id,
  7120. feature.dbxref_id,
  7121. feature.organism_id,
  7122. feature.name,
  7123. feature.uniquename,
  7124. feature.residues,
  7125. feature.seqlen,
  7126. feature.md5checksum,
  7127. feature.type_id,
  7128. feature.is_analysis,
  7129. feature.is_obsolete,
  7130. feature.timeaccessioned,
  7131. feature.timelastmodified
  7132. FROM (feature
  7133. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7134. WHERE ((cvterm.name)::text = 'anchor_binding_site'::text);
  7135. --
  7136. -- Name: anchor_region; Type: VIEW; Schema: so; Owner: -
  7137. --
  7138. CREATE VIEW anchor_region AS
  7139. SELECT feature.feature_id AS anchor_region_id,
  7140. feature.feature_id,
  7141. feature.dbxref_id,
  7142. feature.organism_id,
  7143. feature.name,
  7144. feature.uniquename,
  7145. feature.residues,
  7146. feature.seqlen,
  7147. feature.md5checksum,
  7148. feature.type_id,
  7149. feature.is_analysis,
  7150. feature.is_obsolete,
  7151. feature.timeaccessioned,
  7152. feature.timelastmodified
  7153. FROM (feature
  7154. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7155. WHERE ((cvterm.name)::text = 'anchor_region'::text);
  7156. --
  7157. -- Name: aneuploid; Type: VIEW; Schema: so; Owner: -
  7158. --
  7159. CREATE VIEW aneuploid AS
  7160. SELECT feature.feature_id AS aneuploid_id,
  7161. feature.feature_id,
  7162. feature.dbxref_id,
  7163. feature.organism_id,
  7164. feature.name,
  7165. feature.uniquename,
  7166. feature.residues,
  7167. feature.seqlen,
  7168. feature.md5checksum,
  7169. feature.type_id,
  7170. feature.is_analysis,
  7171. feature.is_obsolete,
  7172. feature.timeaccessioned,
  7173. feature.timelastmodified
  7174. FROM (feature
  7175. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7176. WHERE ((((cvterm.name)::text = 'hyperploid'::text) OR ((cvterm.name)::text = 'hypoploid'::text)) OR ((cvterm.name)::text = 'aneuploid'::text));
  7177. --
  7178. -- Name: aneuploid_chromosome; Type: VIEW; Schema: so; Owner: -
  7179. --
  7180. CREATE VIEW aneuploid_chromosome AS
  7181. SELECT feature.feature_id AS aneuploid_chromosome_id,
  7182. feature.feature_id,
  7183. feature.dbxref_id,
  7184. feature.organism_id,
  7185. feature.name,
  7186. feature.uniquename,
  7187. feature.residues,
  7188. feature.seqlen,
  7189. feature.md5checksum,
  7190. feature.type_id,
  7191. feature.is_analysis,
  7192. feature.is_obsolete,
  7193. feature.timeaccessioned,
  7194. feature.timelastmodified
  7195. FROM (feature
  7196. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7197. WHERE (((cvterm.name)::text = 'inversion_derived_aneuploid_chromosome'::text) OR ((cvterm.name)::text = 'aneuploid_chromosome'::text));
  7198. --
  7199. -- Name: annotation_directed_improved_draft; Type: VIEW; Schema: so; Owner: -
  7200. --
  7201. CREATE VIEW annotation_directed_improved_draft AS
  7202. SELECT feature.feature_id AS annotation_directed_improved_draft_id,
  7203. feature.feature_id,
  7204. feature.dbxref_id,
  7205. feature.organism_id,
  7206. feature.name,
  7207. feature.uniquename,
  7208. feature.residues,
  7209. feature.seqlen,
  7210. feature.md5checksum,
  7211. feature.type_id,
  7212. feature.is_analysis,
  7213. feature.is_obsolete,
  7214. feature.timeaccessioned,
  7215. feature.timelastmodified
  7216. FROM (feature
  7217. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7218. WHERE ((cvterm.name)::text = 'annotation_directed_improved_draft'::text);
  7219. --
  7220. -- Name: anticodon; Type: VIEW; Schema: so; Owner: -
  7221. --
  7222. CREATE VIEW anticodon AS
  7223. SELECT feature.feature_id AS anticodon_id,
  7224. feature.feature_id,
  7225. feature.dbxref_id,
  7226. feature.organism_id,
  7227. feature.name,
  7228. feature.uniquename,
  7229. feature.residues,
  7230. feature.seqlen,
  7231. feature.md5checksum,
  7232. feature.type_id,
  7233. feature.is_analysis,
  7234. feature.is_obsolete,
  7235. feature.timeaccessioned,
  7236. feature.timelastmodified
  7237. FROM (feature
  7238. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7239. WHERE ((cvterm.name)::text = 'anticodon'::text);
  7240. --
  7241. -- Name: anticodon_loop; Type: VIEW; Schema: so; Owner: -
  7242. --
  7243. CREATE VIEW anticodon_loop AS
  7244. SELECT feature.feature_id AS anticodon_loop_id,
  7245. feature.feature_id,
  7246. feature.dbxref_id,
  7247. feature.organism_id,
  7248. feature.name,
  7249. feature.uniquename,
  7250. feature.residues,
  7251. feature.seqlen,
  7252. feature.md5checksum,
  7253. feature.type_id,
  7254. feature.is_analysis,
  7255. feature.is_obsolete,
  7256. feature.timeaccessioned,
  7257. feature.timelastmodified
  7258. FROM (feature
  7259. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7260. WHERE ((cvterm.name)::text = 'anticodon_loop'::text);
  7261. --
  7262. -- Name: antiparallel_beta_strand; Type: VIEW; Schema: so; Owner: -
  7263. --
  7264. CREATE VIEW antiparallel_beta_strand AS
  7265. SELECT feature.feature_id AS antiparallel_beta_strand_id,
  7266. feature.feature_id,
  7267. feature.dbxref_id,
  7268. feature.organism_id,
  7269. feature.name,
  7270. feature.uniquename,
  7271. feature.residues,
  7272. feature.seqlen,
  7273. feature.md5checksum,
  7274. feature.type_id,
  7275. feature.is_analysis,
  7276. feature.is_obsolete,
  7277. feature.timeaccessioned,
  7278. feature.timelastmodified
  7279. FROM (feature
  7280. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7281. WHERE ((cvterm.name)::text = 'antiparallel_beta_strand'::text);
  7282. --
  7283. -- Name: antisense; Type: VIEW; Schema: so; Owner: -
  7284. --
  7285. CREATE VIEW antisense AS
  7286. SELECT feature.feature_id AS antisense_id,
  7287. feature.feature_id,
  7288. feature.dbxref_id,
  7289. feature.organism_id,
  7290. feature.name,
  7291. feature.uniquename,
  7292. feature.residues,
  7293. feature.seqlen,
  7294. feature.md5checksum,
  7295. feature.type_id,
  7296. feature.is_analysis,
  7297. feature.is_obsolete,
  7298. feature.timeaccessioned,
  7299. feature.timelastmodified
  7300. FROM (feature
  7301. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7302. WHERE ((cvterm.name)::text = 'antisense'::text);
  7303. --
  7304. -- Name: antisense_primary_transcript; Type: VIEW; Schema: so; Owner: -
  7305. --
  7306. CREATE VIEW antisense_primary_transcript AS
  7307. SELECT feature.feature_id AS antisense_primary_transcript_id,
  7308. feature.feature_id,
  7309. feature.dbxref_id,
  7310. feature.organism_id,
  7311. feature.name,
  7312. feature.uniquename,
  7313. feature.residues,
  7314. feature.seqlen,
  7315. feature.md5checksum,
  7316. feature.type_id,
  7317. feature.is_analysis,
  7318. feature.is_obsolete,
  7319. feature.timeaccessioned,
  7320. feature.timelastmodified
  7321. FROM (feature
  7322. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7323. WHERE ((cvterm.name)::text = 'antisense_primary_transcript'::text);
  7324. --
  7325. -- Name: antisense_rna; Type: VIEW; Schema: so; Owner: -
  7326. --
  7327. CREATE VIEW antisense_rna AS
  7328. SELECT feature.feature_id AS antisense_rna_id,
  7329. feature.feature_id,
  7330. feature.dbxref_id,
  7331. feature.organism_id,
  7332. feature.name,
  7333. feature.uniquename,
  7334. feature.residues,
  7335. feature.seqlen,
  7336. feature.md5checksum,
  7337. feature.type_id,
  7338. feature.is_analysis,
  7339. feature.is_obsolete,
  7340. feature.timeaccessioned,
  7341. feature.timelastmodified
  7342. FROM (feature
  7343. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7344. WHERE (((cvterm.name)::text = 'MicF_RNA'::text) OR ((cvterm.name)::text = 'antisense_RNA'::text));
  7345. --
  7346. -- Name: apicoplast_chromosome; Type: VIEW; Schema: so; Owner: -
  7347. --
  7348. CREATE VIEW apicoplast_chromosome AS
  7349. SELECT feature.feature_id AS apicoplast_chromosome_id,
  7350. feature.feature_id,
  7351. feature.dbxref_id,
  7352. feature.organism_id,
  7353. feature.name,
  7354. feature.uniquename,
  7355. feature.residues,
  7356. feature.seqlen,
  7357. feature.md5checksum,
  7358. feature.type_id,
  7359. feature.is_analysis,
  7360. feature.is_obsolete,
  7361. feature.timeaccessioned,
  7362. feature.timelastmodified
  7363. FROM (feature
  7364. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7365. WHERE ((cvterm.name)::text = 'apicoplast_chromosome'::text);
  7366. --
  7367. -- Name: apicoplast_gene; Type: VIEW; Schema: so; Owner: -
  7368. --
  7369. CREATE VIEW apicoplast_gene AS
  7370. SELECT feature.feature_id AS apicoplast_gene_id,
  7371. feature.feature_id,
  7372. feature.dbxref_id,
  7373. feature.organism_id,
  7374. feature.name,
  7375. feature.uniquename,
  7376. feature.residues,
  7377. feature.seqlen,
  7378. feature.md5checksum,
  7379. feature.type_id,
  7380. feature.is_analysis,
  7381. feature.is_obsolete,
  7382. feature.timeaccessioned,
  7383. feature.timelastmodified
  7384. FROM (feature
  7385. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7386. WHERE ((cvterm.name)::text = 'apicoplast_gene'::text);
  7387. --
  7388. -- Name: apicoplast_sequence; Type: VIEW; Schema: so; Owner: -
  7389. --
  7390. CREATE VIEW apicoplast_sequence AS
  7391. SELECT feature.feature_id AS apicoplast_sequence_id,
  7392. feature.feature_id,
  7393. feature.dbxref_id,
  7394. feature.organism_id,
  7395. feature.name,
  7396. feature.uniquename,
  7397. feature.residues,
  7398. feature.seqlen,
  7399. feature.md5checksum,
  7400. feature.type_id,
  7401. feature.is_analysis,
  7402. feature.is_obsolete,
  7403. feature.timeaccessioned,
  7404. feature.timelastmodified
  7405. FROM (feature
  7406. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7407. WHERE ((cvterm.name)::text = 'apicoplast_sequence'::text);
  7408. --
  7409. -- Name: aptamer; Type: VIEW; Schema: so; Owner: -
  7410. --
  7411. CREATE VIEW aptamer AS
  7412. SELECT feature.feature_id AS aptamer_id,
  7413. feature.feature_id,
  7414. feature.dbxref_id,
  7415. feature.organism_id,
  7416. feature.name,
  7417. feature.uniquename,
  7418. feature.residues,
  7419. feature.seqlen,
  7420. feature.md5checksum,
  7421. feature.type_id,
  7422. feature.is_analysis,
  7423. feature.is_obsolete,
  7424. feature.timeaccessioned,
  7425. feature.timelastmodified
  7426. FROM (feature
  7427. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7428. WHERE ((((cvterm.name)::text = 'DNA_aptamer'::text) OR ((cvterm.name)::text = 'RNA_aptamer'::text)) OR ((cvterm.name)::text = 'aptamer'::text));
  7429. --
  7430. -- Name: archaeal_intron; Type: VIEW; Schema: so; Owner: -
  7431. --
  7432. CREATE VIEW archaeal_intron AS
  7433. SELECT feature.feature_id AS archaeal_intron_id,
  7434. feature.feature_id,
  7435. feature.dbxref_id,
  7436. feature.organism_id,
  7437. feature.name,
  7438. feature.uniquename,
  7439. feature.residues,
  7440. feature.seqlen,
  7441. feature.md5checksum,
  7442. feature.type_id,
  7443. feature.is_analysis,
  7444. feature.is_obsolete,
  7445. feature.timeaccessioned,
  7446. feature.timelastmodified
  7447. FROM (feature
  7448. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7449. WHERE ((cvterm.name)::text = 'archaeal_intron'::text);
  7450. --
  7451. -- Name: archaeosine; Type: VIEW; Schema: so; Owner: -
  7452. --
  7453. CREATE VIEW archaeosine AS
  7454. SELECT feature.feature_id AS archaeosine_id,
  7455. feature.feature_id,
  7456. feature.dbxref_id,
  7457. feature.organism_id,
  7458. feature.name,
  7459. feature.uniquename,
  7460. feature.residues,
  7461. feature.seqlen,
  7462. feature.md5checksum,
  7463. feature.type_id,
  7464. feature.is_analysis,
  7465. feature.is_obsolete,
  7466. feature.timeaccessioned,
  7467. feature.timelastmodified
  7468. FROM (feature
  7469. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7470. WHERE ((cvterm.name)::text = 'archaeosine'::text);
  7471. --
  7472. -- Name: arg_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  7473. --
  7474. CREATE VIEW arg_trna_primary_transcript AS
  7475. SELECT feature.feature_id AS arg_trna_primary_transcript_id,
  7476. feature.feature_id,
  7477. feature.dbxref_id,
  7478. feature.organism_id,
  7479. feature.name,
  7480. feature.uniquename,
  7481. feature.residues,
  7482. feature.seqlen,
  7483. feature.md5checksum,
  7484. feature.type_id,
  7485. feature.is_analysis,
  7486. feature.is_obsolete,
  7487. feature.timeaccessioned,
  7488. feature.timelastmodified
  7489. FROM (feature
  7490. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7491. WHERE ((cvterm.name)::text = 'arginine_tRNA_primary_transcript'::text);
  7492. --
  7493. -- Name: arginine; Type: VIEW; Schema: so; Owner: -
  7494. --
  7495. CREATE VIEW arginine AS
  7496. SELECT feature.feature_id AS arginine_id,
  7497. feature.feature_id,
  7498. feature.dbxref_id,
  7499. feature.organism_id,
  7500. feature.name,
  7501. feature.uniquename,
  7502. feature.residues,
  7503. feature.seqlen,
  7504. feature.md5checksum,
  7505. feature.type_id,
  7506. feature.is_analysis,
  7507. feature.is_obsolete,
  7508. feature.timeaccessioned,
  7509. feature.timelastmodified
  7510. FROM (feature
  7511. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7512. WHERE ((cvterm.name)::text = 'arginine'::text);
  7513. --
  7514. -- Name: arginyl_trna; Type: VIEW; Schema: so; Owner: -
  7515. --
  7516. CREATE VIEW arginyl_trna AS
  7517. SELECT feature.feature_id AS arginyl_trna_id,
  7518. feature.feature_id,
  7519. feature.dbxref_id,
  7520. feature.organism_id,
  7521. feature.name,
  7522. feature.uniquename,
  7523. feature.residues,
  7524. feature.seqlen,
  7525. feature.md5checksum,
  7526. feature.type_id,
  7527. feature.is_analysis,
  7528. feature.is_obsolete,
  7529. feature.timeaccessioned,
  7530. feature.timelastmodified
  7531. FROM (feature
  7532. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7533. WHERE ((cvterm.name)::text = 'arginyl_tRNA'::text);
  7534. --
  7535. -- Name: ars; Type: VIEW; Schema: so; Owner: -
  7536. --
  7537. CREATE VIEW ars AS
  7538. SELECT feature.feature_id AS ars_id,
  7539. feature.feature_id,
  7540. feature.dbxref_id,
  7541. feature.organism_id,
  7542. feature.name,
  7543. feature.uniquename,
  7544. feature.residues,
  7545. feature.seqlen,
  7546. feature.md5checksum,
  7547. feature.type_id,
  7548. feature.is_analysis,
  7549. feature.is_obsolete,
  7550. feature.timeaccessioned,
  7551. feature.timelastmodified
  7552. FROM (feature
  7553. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7554. WHERE ((cvterm.name)::text = 'ARS'::text);
  7555. --
  7556. -- Name: asparagine; Type: VIEW; Schema: so; Owner: -
  7557. --
  7558. CREATE VIEW asparagine AS
  7559. SELECT feature.feature_id AS asparagine_id,
  7560. feature.feature_id,
  7561. feature.dbxref_id,
  7562. feature.organism_id,
  7563. feature.name,
  7564. feature.uniquename,
  7565. feature.residues,
  7566. feature.seqlen,
  7567. feature.md5checksum,
  7568. feature.type_id,
  7569. feature.is_analysis,
  7570. feature.is_obsolete,
  7571. feature.timeaccessioned,
  7572. feature.timelastmodified
  7573. FROM (feature
  7574. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7575. WHERE ((cvterm.name)::text = 'asparagine'::text);
  7576. --
  7577. -- Name: asparagine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  7578. --
  7579. CREATE VIEW asparagine_trna_primary_transcript AS
  7580. SELECT feature.feature_id AS asparagine_trna_primary_transcript_id,
  7581. feature.feature_id,
  7582. feature.dbxref_id,
  7583. feature.organism_id,
  7584. feature.name,
  7585. feature.uniquename,
  7586. feature.residues,
  7587. feature.seqlen,
  7588. feature.md5checksum,
  7589. feature.type_id,
  7590. feature.is_analysis,
  7591. feature.is_obsolete,
  7592. feature.timeaccessioned,
  7593. feature.timelastmodified
  7594. FROM (feature
  7595. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7596. WHERE ((cvterm.name)::text = 'asparagine_tRNA_primary_transcript'::text);
  7597. --
  7598. -- Name: asparaginyl_trna; Type: VIEW; Schema: so; Owner: -
  7599. --
  7600. CREATE VIEW asparaginyl_trna AS
  7601. SELECT feature.feature_id AS asparaginyl_trna_id,
  7602. feature.feature_id,
  7603. feature.dbxref_id,
  7604. feature.organism_id,
  7605. feature.name,
  7606. feature.uniquename,
  7607. feature.residues,
  7608. feature.seqlen,
  7609. feature.md5checksum,
  7610. feature.type_id,
  7611. feature.is_analysis,
  7612. feature.is_obsolete,
  7613. feature.timeaccessioned,
  7614. feature.timelastmodified
  7615. FROM (feature
  7616. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7617. WHERE ((cvterm.name)::text = 'asparaginyl_tRNA'::text);
  7618. --
  7619. -- Name: aspartic_acid; Type: VIEW; Schema: so; Owner: -
  7620. --
  7621. CREATE VIEW aspartic_acid AS
  7622. SELECT feature.feature_id AS aspartic_acid_id,
  7623. feature.feature_id,
  7624. feature.dbxref_id,
  7625. feature.organism_id,
  7626. feature.name,
  7627. feature.uniquename,
  7628. feature.residues,
  7629. feature.seqlen,
  7630. feature.md5checksum,
  7631. feature.type_id,
  7632. feature.is_analysis,
  7633. feature.is_obsolete,
  7634. feature.timeaccessioned,
  7635. feature.timelastmodified
  7636. FROM (feature
  7637. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7638. WHERE ((cvterm.name)::text = 'aspartic_acid'::text);
  7639. --
  7640. -- Name: aspartic_acid_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  7641. --
  7642. CREATE VIEW aspartic_acid_trna_primary_transcript AS
  7643. SELECT feature.feature_id AS aspartic_acid_trna_primary_transcript_id,
  7644. feature.feature_id,
  7645. feature.dbxref_id,
  7646. feature.organism_id,
  7647. feature.name,
  7648. feature.uniquename,
  7649. feature.residues,
  7650. feature.seqlen,
  7651. feature.md5checksum,
  7652. feature.type_id,
  7653. feature.is_analysis,
  7654. feature.is_obsolete,
  7655. feature.timeaccessioned,
  7656. feature.timelastmodified
  7657. FROM (feature
  7658. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7659. WHERE ((cvterm.name)::text = 'aspartic_acid_tRNA_primary_transcript'::text);
  7660. --
  7661. -- Name: aspartyl_trna; Type: VIEW; Schema: so; Owner: -
  7662. --
  7663. CREATE VIEW aspartyl_trna AS
  7664. SELECT feature.feature_id AS aspartyl_trna_id,
  7665. feature.feature_id,
  7666. feature.dbxref_id,
  7667. feature.organism_id,
  7668. feature.name,
  7669. feature.uniquename,
  7670. feature.residues,
  7671. feature.seqlen,
  7672. feature.md5checksum,
  7673. feature.type_id,
  7674. feature.is_analysis,
  7675. feature.is_obsolete,
  7676. feature.timeaccessioned,
  7677. feature.timelastmodified
  7678. FROM (feature
  7679. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7680. WHERE ((cvterm.name)::text = 'aspartyl_tRNA'::text);
  7681. --
  7682. -- Name: aspe_primer; Type: VIEW; Schema: so; Owner: -
  7683. --
  7684. CREATE VIEW aspe_primer AS
  7685. SELECT feature.feature_id AS aspe_primer_id,
  7686. feature.feature_id,
  7687. feature.dbxref_id,
  7688. feature.organism_id,
  7689. feature.name,
  7690. feature.uniquename,
  7691. feature.residues,
  7692. feature.seqlen,
  7693. feature.md5checksum,
  7694. feature.type_id,
  7695. feature.is_analysis,
  7696. feature.is_obsolete,
  7697. feature.timeaccessioned,
  7698. feature.timelastmodified
  7699. FROM (feature
  7700. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7701. WHERE ((cvterm.name)::text = 'ASPE_primer'::text);
  7702. --
  7703. -- Name: assembly; Type: VIEW; Schema: so; Owner: -
  7704. --
  7705. CREATE VIEW assembly AS
  7706. SELECT feature.feature_id AS assembly_id,
  7707. feature.feature_id,
  7708. feature.dbxref_id,
  7709. feature.organism_id,
  7710. feature.name,
  7711. feature.uniquename,
  7712. feature.residues,
  7713. feature.seqlen,
  7714. feature.md5checksum,
  7715. feature.type_id,
  7716. feature.is_analysis,
  7717. feature.is_obsolete,
  7718. feature.timeaccessioned,
  7719. feature.timelastmodified
  7720. FROM (feature
  7721. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7722. WHERE ((((((((((((((cvterm.name)::text = 'sequence_assembly'::text) OR ((cvterm.name)::text = 'fragment_assembly'::text)) OR ((cvterm.name)::text = 'supercontig'::text)) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'tiling_path'::text)) OR ((cvterm.name)::text = 'virtual_sequence'::text)) OR ((cvterm.name)::text = 'golden_path'::text)) OR ((cvterm.name)::text = 'ultracontig'::text)) OR ((cvterm.name)::text = 'expressed_sequence_assembly'::text)) OR ((cvterm.name)::text = 'fingerprint_map'::text)) OR ((cvterm.name)::text = 'STS_map'::text)) OR ((cvterm.name)::text = 'RH_map'::text)) OR ((cvterm.name)::text = 'assembly'::text));
  7723. --
  7724. -- Name: assembly_component; Type: VIEW; Schema: so; Owner: -
  7725. --
  7726. CREATE VIEW assembly_component AS
  7727. SELECT feature.feature_id AS assembly_component_id,
  7728. feature.feature_id,
  7729. feature.dbxref_id,
  7730. feature.organism_id,
  7731. feature.name,
  7732. feature.uniquename,
  7733. feature.residues,
  7734. feature.seqlen,
  7735. feature.md5checksum,
  7736. feature.type_id,
  7737. feature.is_analysis,
  7738. feature.is_obsolete,
  7739. feature.timeaccessioned,
  7740. feature.timelastmodified
  7741. FROM (feature
  7742. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7743. WHERE ((((((((((((((((((((((cvterm.name)::text = 'contig'::text) OR ((cvterm.name)::text = 'read'::text)) OR ((cvterm.name)::text = 'restriction_fragment'::text)) OR ((cvterm.name)::text = 'golden_path_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_fragment'::text)) OR ((cvterm.name)::text = 'gap'::text)) OR ((cvterm.name)::text = 'sonicate_fragment'::text)) OR ((cvterm.name)::text = 'paired_end_fragment'::text)) OR ((cvterm.name)::text = 'read_pair'::text)) OR ((cvterm.name)::text = 'contig_read'::text)) OR ((cvterm.name)::text = 'BAC_end'::text)) OR ((cvterm.name)::text = 'dye_terminator_read'::text)) OR ((cvterm.name)::text = 'pyrosequenced_read'::text)) OR ((cvterm.name)::text = 'ligation_based_read'::text)) OR ((cvterm.name)::text = 'polymerase_synthesis_read'::text)) OR ((cvterm.name)::text = 'PAC_end'::text)) OR ((cvterm.name)::text = 'YAC_end'::text)) OR ((cvterm.name)::text = 'clone_end'::text)) OR ((cvterm.name)::text = 'RFLP_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'assembly_component'::text));
  7744. --
  7745. -- Name: assembly_error_correction; Type: VIEW; Schema: so; Owner: -
  7746. --
  7747. CREATE VIEW assembly_error_correction AS
  7748. SELECT feature.feature_id AS assembly_error_correction_id,
  7749. feature.feature_id,
  7750. feature.dbxref_id,
  7751. feature.organism_id,
  7752. feature.name,
  7753. feature.uniquename,
  7754. feature.residues,
  7755. feature.seqlen,
  7756. feature.md5checksum,
  7757. feature.type_id,
  7758. feature.is_analysis,
  7759. feature.is_obsolete,
  7760. feature.timeaccessioned,
  7761. feature.timelastmodified
  7762. FROM (feature
  7763. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7764. WHERE ((cvterm.name)::text = 'assembly_error_correction'::text);
  7765. --
  7766. -- Name: assortment_derived_aneuploid; Type: VIEW; Schema: so; Owner: -
  7767. --
  7768. CREATE VIEW assortment_derived_aneuploid AS
  7769. SELECT feature.feature_id AS assortment_derived_aneuploid_id,
  7770. feature.feature_id,
  7771. feature.dbxref_id,
  7772. feature.organism_id,
  7773. feature.name,
  7774. feature.uniquename,
  7775. feature.residues,
  7776. feature.seqlen,
  7777. feature.md5checksum,
  7778. feature.type_id,
  7779. feature.is_analysis,
  7780. feature.is_obsolete,
  7781. feature.timeaccessioned,
  7782. feature.timelastmodified
  7783. FROM (feature
  7784. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7785. WHERE ((cvterm.name)::text = 'assortment_derived_aneuploid'::text);
  7786. --
  7787. -- Name: assortment_derived_deficiency; Type: VIEW; Schema: so; Owner: -
  7788. --
  7789. CREATE VIEW assortment_derived_deficiency AS
  7790. SELECT feature.feature_id AS assortment_derived_deficiency_id,
  7791. feature.feature_id,
  7792. feature.dbxref_id,
  7793. feature.organism_id,
  7794. feature.name,
  7795. feature.uniquename,
  7796. feature.residues,
  7797. feature.seqlen,
  7798. feature.md5checksum,
  7799. feature.type_id,
  7800. feature.is_analysis,
  7801. feature.is_obsolete,
  7802. feature.timeaccessioned,
  7803. feature.timelastmodified
  7804. FROM (feature
  7805. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7806. WHERE ((cvterm.name)::text = 'assortment_derived_deficiency'::text);
  7807. --
  7808. -- Name: assortment_derived_deficiency_plus_duplication; Type: VIEW; Schema: so; Owner: -
  7809. --
  7810. CREATE VIEW assortment_derived_deficiency_plus_duplication AS
  7811. SELECT feature.feature_id AS assortment_derived_deficiency_plus_duplication_id,
  7812. feature.feature_id,
  7813. feature.dbxref_id,
  7814. feature.organism_id,
  7815. feature.name,
  7816. feature.uniquename,
  7817. feature.residues,
  7818. feature.seqlen,
  7819. feature.md5checksum,
  7820. feature.type_id,
  7821. feature.is_analysis,
  7822. feature.is_obsolete,
  7823. feature.timeaccessioned,
  7824. feature.timelastmodified
  7825. FROM (feature
  7826. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7827. WHERE ((cvterm.name)::text = 'assortment_derived_deficiency_plus_duplication'::text);
  7828. --
  7829. -- Name: assortment_derived_duplication; Type: VIEW; Schema: so; Owner: -
  7830. --
  7831. CREATE VIEW assortment_derived_duplication AS
  7832. SELECT feature.feature_id AS assortment_derived_duplication_id,
  7833. feature.feature_id,
  7834. feature.dbxref_id,
  7835. feature.organism_id,
  7836. feature.name,
  7837. feature.uniquename,
  7838. feature.residues,
  7839. feature.seqlen,
  7840. feature.md5checksum,
  7841. feature.type_id,
  7842. feature.is_analysis,
  7843. feature.is_obsolete,
  7844. feature.timeaccessioned,
  7845. feature.timelastmodified
  7846. FROM (feature
  7847. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7848. WHERE ((cvterm.name)::text = 'assortment_derived_duplication'::text);
  7849. --
  7850. -- Name: assortment_derived_variation; Type: VIEW; Schema: so; Owner: -
  7851. --
  7852. CREATE VIEW assortment_derived_variation AS
  7853. SELECT feature.feature_id AS assortment_derived_variation_id,
  7854. feature.feature_id,
  7855. feature.dbxref_id,
  7856. feature.organism_id,
  7857. feature.name,
  7858. feature.uniquename,
  7859. feature.residues,
  7860. feature.seqlen,
  7861. feature.md5checksum,
  7862. feature.type_id,
  7863. feature.is_analysis,
  7864. feature.is_obsolete,
  7865. feature.timeaccessioned,
  7866. feature.timelastmodified
  7867. FROM (feature
  7868. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7869. WHERE ((((((cvterm.name)::text = 'assortment_derived_duplication'::text) OR ((cvterm.name)::text = 'assortment_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'assortment_derived_deficiency'::text)) OR ((cvterm.name)::text = 'assortment_derived_aneuploid'::text)) OR ((cvterm.name)::text = 'assortment_derived_variation'::text));
  7870. --
  7871. -- Name: asx_motif; Type: VIEW; Schema: so; Owner: -
  7872. --
  7873. CREATE VIEW asx_motif AS
  7874. SELECT feature.feature_id AS asx_motif_id,
  7875. feature.feature_id,
  7876. feature.dbxref_id,
  7877. feature.organism_id,
  7878. feature.name,
  7879. feature.uniquename,
  7880. feature.residues,
  7881. feature.seqlen,
  7882. feature.md5checksum,
  7883. feature.type_id,
  7884. feature.is_analysis,
  7885. feature.is_obsolete,
  7886. feature.timeaccessioned,
  7887. feature.timelastmodified
  7888. FROM (feature
  7889. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7890. WHERE ((cvterm.name)::text = 'asx_motif'::text);
  7891. --
  7892. -- Name: asx_turn; Type: VIEW; Schema: so; Owner: -
  7893. --
  7894. CREATE VIEW asx_turn AS
  7895. SELECT feature.feature_id AS asx_turn_id,
  7896. feature.feature_id,
  7897. feature.dbxref_id,
  7898. feature.organism_id,
  7899. feature.name,
  7900. feature.uniquename,
  7901. feature.residues,
  7902. feature.seqlen,
  7903. feature.md5checksum,
  7904. feature.type_id,
  7905. feature.is_analysis,
  7906. feature.is_obsolete,
  7907. feature.timeaccessioned,
  7908. feature.timelastmodified
  7909. FROM (feature
  7910. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7911. WHERE ((((((cvterm.name)::text = 'asx_turn_left_handed_type_one'::text) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'asx_turn'::text));
  7912. --
  7913. -- Name: asx_turn_left_handed_type_one; Type: VIEW; Schema: so; Owner: -
  7914. --
  7915. CREATE VIEW asx_turn_left_handed_type_one AS
  7916. SELECT feature.feature_id AS asx_turn_left_handed_type_one_id,
  7917. feature.feature_id,
  7918. feature.dbxref_id,
  7919. feature.organism_id,
  7920. feature.name,
  7921. feature.uniquename,
  7922. feature.residues,
  7923. feature.seqlen,
  7924. feature.md5checksum,
  7925. feature.type_id,
  7926. feature.is_analysis,
  7927. feature.is_obsolete,
  7928. feature.timeaccessioned,
  7929. feature.timelastmodified
  7930. FROM (feature
  7931. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7932. WHERE ((cvterm.name)::text = 'asx_turn_left_handed_type_one'::text);
  7933. --
  7934. -- Name: asx_turn_left_handed_type_two; Type: VIEW; Schema: so; Owner: -
  7935. --
  7936. CREATE VIEW asx_turn_left_handed_type_two AS
  7937. SELECT feature.feature_id AS asx_turn_left_handed_type_two_id,
  7938. feature.feature_id,
  7939. feature.dbxref_id,
  7940. feature.organism_id,
  7941. feature.name,
  7942. feature.uniquename,
  7943. feature.residues,
  7944. feature.seqlen,
  7945. feature.md5checksum,
  7946. feature.type_id,
  7947. feature.is_analysis,
  7948. feature.is_obsolete,
  7949. feature.timeaccessioned,
  7950. feature.timelastmodified
  7951. FROM (feature
  7952. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7953. WHERE ((cvterm.name)::text = 'asx_turn_left_handed_type_two'::text);
  7954. --
  7955. -- Name: asx_turn_right_handed_type_one; Type: VIEW; Schema: so; Owner: -
  7956. --
  7957. CREATE VIEW asx_turn_right_handed_type_one AS
  7958. SELECT feature.feature_id AS asx_turn_right_handed_type_one_id,
  7959. feature.feature_id,
  7960. feature.dbxref_id,
  7961. feature.organism_id,
  7962. feature.name,
  7963. feature.uniquename,
  7964. feature.residues,
  7965. feature.seqlen,
  7966. feature.md5checksum,
  7967. feature.type_id,
  7968. feature.is_analysis,
  7969. feature.is_obsolete,
  7970. feature.timeaccessioned,
  7971. feature.timelastmodified
  7972. FROM (feature
  7973. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7974. WHERE ((cvterm.name)::text = 'asx_turn_right_handed_type_one'::text);
  7975. --
  7976. -- Name: asx_turn_right_handed_type_two; Type: VIEW; Schema: so; Owner: -
  7977. --
  7978. CREATE VIEW asx_turn_right_handed_type_two AS
  7979. SELECT feature.feature_id AS asx_turn_right_handed_type_two_id,
  7980. feature.feature_id,
  7981. feature.dbxref_id,
  7982. feature.organism_id,
  7983. feature.name,
  7984. feature.uniquename,
  7985. feature.residues,
  7986. feature.seqlen,
  7987. feature.md5checksum,
  7988. feature.type_id,
  7989. feature.is_analysis,
  7990. feature.is_obsolete,
  7991. feature.timeaccessioned,
  7992. feature.timelastmodified
  7993. FROM (feature
  7994. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  7995. WHERE ((cvterm.name)::text = 'asx_turn_right_handed_type_two'::text);
  7996. --
  7997. -- Name: asymmetric_rna_internal_loop; Type: VIEW; Schema: so; Owner: -
  7998. --
  7999. CREATE VIEW asymmetric_rna_internal_loop AS
  8000. SELECT feature.feature_id AS asymmetric_rna_internal_loop_id,
  8001. feature.feature_id,
  8002. feature.dbxref_id,
  8003. feature.organism_id,
  8004. feature.name,
  8005. feature.uniquename,
  8006. feature.residues,
  8007. feature.seqlen,
  8008. feature.md5checksum,
  8009. feature.type_id,
  8010. feature.is_analysis,
  8011. feature.is_obsolete,
  8012. feature.timeaccessioned,
  8013. feature.timelastmodified
  8014. FROM (feature
  8015. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8016. WHERE ((((cvterm.name)::text = 'K_turn_RNA_motif'::text) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text));
  8017. --
  8018. -- Name: attb_site; Type: VIEW; Schema: so; Owner: -
  8019. --
  8020. CREATE VIEW attb_site AS
  8021. SELECT feature.feature_id AS attb_site_id,
  8022. feature.feature_id,
  8023. feature.dbxref_id,
  8024. feature.organism_id,
  8025. feature.name,
  8026. feature.uniquename,
  8027. feature.residues,
  8028. feature.seqlen,
  8029. feature.md5checksum,
  8030. feature.type_id,
  8031. feature.is_analysis,
  8032. feature.is_obsolete,
  8033. feature.timeaccessioned,
  8034. feature.timelastmodified
  8035. FROM (feature
  8036. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8037. WHERE ((cvterm.name)::text = 'attB_site'::text);
  8038. --
  8039. -- Name: attc_site; Type: VIEW; Schema: so; Owner: -
  8040. --
  8041. CREATE VIEW attc_site AS
  8042. SELECT feature.feature_id AS attc_site_id,
  8043. feature.feature_id,
  8044. feature.dbxref_id,
  8045. feature.organism_id,
  8046. feature.name,
  8047. feature.uniquename,
  8048. feature.residues,
  8049. feature.seqlen,
  8050. feature.md5checksum,
  8051. feature.type_id,
  8052. feature.is_analysis,
  8053. feature.is_obsolete,
  8054. feature.timeaccessioned,
  8055. feature.timelastmodified
  8056. FROM (feature
  8057. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8058. WHERE ((cvterm.name)::text = 'attC_site'::text);
  8059. --
  8060. -- Name: attctn_site; Type: VIEW; Schema: so; Owner: -
  8061. --
  8062. CREATE VIEW attctn_site AS
  8063. SELECT feature.feature_id AS attctn_site_id,
  8064. feature.feature_id,
  8065. feature.dbxref_id,
  8066. feature.organism_id,
  8067. feature.name,
  8068. feature.uniquename,
  8069. feature.residues,
  8070. feature.seqlen,
  8071. feature.md5checksum,
  8072. feature.type_id,
  8073. feature.is_analysis,
  8074. feature.is_obsolete,
  8075. feature.timeaccessioned,
  8076. feature.timelastmodified
  8077. FROM (feature
  8078. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8079. WHERE ((cvterm.name)::text = 'attCtn_site'::text);
  8080. --
  8081. -- Name: attenuator; Type: VIEW; Schema: so; Owner: -
  8082. --
  8083. CREATE VIEW attenuator AS
  8084. SELECT feature.feature_id AS attenuator_id,
  8085. feature.feature_id,
  8086. feature.dbxref_id,
  8087. feature.organism_id,
  8088. feature.name,
  8089. feature.uniquename,
  8090. feature.residues,
  8091. feature.seqlen,
  8092. feature.md5checksum,
  8093. feature.type_id,
  8094. feature.is_analysis,
  8095. feature.is_obsolete,
  8096. feature.timeaccessioned,
  8097. feature.timelastmodified
  8098. FROM (feature
  8099. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8100. WHERE ((cvterm.name)::text = 'attenuator'::text);
  8101. --
  8102. -- Name: atti_site; Type: VIEW; Schema: so; Owner: -
  8103. --
  8104. CREATE VIEW atti_site AS
  8105. SELECT feature.feature_id AS atti_site_id,
  8106. feature.feature_id,
  8107. feature.dbxref_id,
  8108. feature.organism_id,
  8109. feature.name,
  8110. feature.uniquename,
  8111. feature.residues,
  8112. feature.seqlen,
  8113. feature.md5checksum,
  8114. feature.type_id,
  8115. feature.is_analysis,
  8116. feature.is_obsolete,
  8117. feature.timeaccessioned,
  8118. feature.timelastmodified
  8119. FROM (feature
  8120. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8121. WHERE ((cvterm.name)::text = 'attI_site'::text);
  8122. --
  8123. -- Name: attl_site; Type: VIEW; Schema: so; Owner: -
  8124. --
  8125. CREATE VIEW attl_site AS
  8126. SELECT feature.feature_id AS attl_site_id,
  8127. feature.feature_id,
  8128. feature.dbxref_id,
  8129. feature.organism_id,
  8130. feature.name,
  8131. feature.uniquename,
  8132. feature.residues,
  8133. feature.seqlen,
  8134. feature.md5checksum,
  8135. feature.type_id,
  8136. feature.is_analysis,
  8137. feature.is_obsolete,
  8138. feature.timeaccessioned,
  8139. feature.timelastmodified
  8140. FROM (feature
  8141. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8142. WHERE ((cvterm.name)::text = 'attL_site'::text);
  8143. --
  8144. -- Name: attp_site; Type: VIEW; Schema: so; Owner: -
  8145. --
  8146. CREATE VIEW attp_site AS
  8147. SELECT feature.feature_id AS attp_site_id,
  8148. feature.feature_id,
  8149. feature.dbxref_id,
  8150. feature.organism_id,
  8151. feature.name,
  8152. feature.uniquename,
  8153. feature.residues,
  8154. feature.seqlen,
  8155. feature.md5checksum,
  8156. feature.type_id,
  8157. feature.is_analysis,
  8158. feature.is_obsolete,
  8159. feature.timeaccessioned,
  8160. feature.timelastmodified
  8161. FROM (feature
  8162. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8163. WHERE ((cvterm.name)::text = 'attP_site'::text);
  8164. --
  8165. -- Name: attr_site; Type: VIEW; Schema: so; Owner: -
  8166. --
  8167. CREATE VIEW attr_site AS
  8168. SELECT feature.feature_id AS attr_site_id,
  8169. feature.feature_id,
  8170. feature.dbxref_id,
  8171. feature.organism_id,
  8172. feature.name,
  8173. feature.uniquename,
  8174. feature.residues,
  8175. feature.seqlen,
  8176. feature.md5checksum,
  8177. feature.type_id,
  8178. feature.is_analysis,
  8179. feature.is_obsolete,
  8180. feature.timeaccessioned,
  8181. feature.timelastmodified
  8182. FROM (feature
  8183. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8184. WHERE ((cvterm.name)::text = 'attR_site'::text);
  8185. --
  8186. -- Name: au_rich_element; Type: VIEW; Schema: so; Owner: -
  8187. --
  8188. CREATE VIEW au_rich_element AS
  8189. SELECT feature.feature_id AS au_rich_element_id,
  8190. feature.feature_id,
  8191. feature.dbxref_id,
  8192. feature.organism_id,
  8193. feature.name,
  8194. feature.uniquename,
  8195. feature.residues,
  8196. feature.seqlen,
  8197. feature.md5checksum,
  8198. feature.type_id,
  8199. feature.is_analysis,
  8200. feature.is_obsolete,
  8201. feature.timeaccessioned,
  8202. feature.timelastmodified
  8203. FROM (feature
  8204. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8205. WHERE ((cvterm.name)::text = 'AU_rich_element'::text);
  8206. --
  8207. -- Name: autocatalytically_spliced_intron; Type: VIEW; Schema: so; Owner: -
  8208. --
  8209. CREATE VIEW autocatalytically_spliced_intron AS
  8210. SELECT feature.feature_id AS autocatalytically_spliced_intron_id,
  8211. feature.feature_id,
  8212. feature.dbxref_id,
  8213. feature.organism_id,
  8214. feature.name,
  8215. feature.uniquename,
  8216. feature.residues,
  8217. feature.seqlen,
  8218. feature.md5checksum,
  8219. feature.type_id,
  8220. feature.is_analysis,
  8221. feature.is_obsolete,
  8222. feature.timeaccessioned,
  8223. feature.timelastmodified
  8224. FROM (feature
  8225. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8226. WHERE (((((((cvterm.name)::text = 'group_I_intron'::text) OR ((cvterm.name)::text = 'group_II_intron'::text)) OR ((cvterm.name)::text = 'group_III_intron'::text)) OR ((cvterm.name)::text = 'group_IIA_intron'::text)) OR ((cvterm.name)::text = 'group_IIB_intron'::text)) OR ((cvterm.name)::text = 'autocatalytically_spliced_intron'::text));
  8227. --
  8228. -- Name: autopolyploid; Type: VIEW; Schema: so; Owner: -
  8229. --
  8230. CREATE VIEW autopolyploid AS
  8231. SELECT feature.feature_id AS autopolyploid_id,
  8232. feature.feature_id,
  8233. feature.dbxref_id,
  8234. feature.organism_id,
  8235. feature.name,
  8236. feature.uniquename,
  8237. feature.residues,
  8238. feature.seqlen,
  8239. feature.md5checksum,
  8240. feature.type_id,
  8241. feature.is_analysis,
  8242. feature.is_obsolete,
  8243. feature.timeaccessioned,
  8244. feature.timelastmodified
  8245. FROM (feature
  8246. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8247. WHERE ((cvterm.name)::text = 'autopolyploid'::text);
  8248. --
  8249. -- Name: autoregulated; Type: VIEW; Schema: so; Owner: -
  8250. --
  8251. CREATE VIEW autoregulated AS
  8252. SELECT feature.feature_id AS autoregulated_id,
  8253. feature.feature_id,
  8254. feature.dbxref_id,
  8255. feature.organism_id,
  8256. feature.name,
  8257. feature.uniquename,
  8258. feature.residues,
  8259. feature.seqlen,
  8260. feature.md5checksum,
  8261. feature.type_id,
  8262. feature.is_analysis,
  8263. feature.is_obsolete,
  8264. feature.timeaccessioned,
  8265. feature.timelastmodified
  8266. FROM (feature
  8267. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8268. WHERE ((((cvterm.name)::text = 'negatively_autoregulated'::text) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'autoregulated'::text));
  8269. --
  8270. -- Name: autosynaptic_chromosome; Type: VIEW; Schema: so; Owner: -
  8271. --
  8272. CREATE VIEW autosynaptic_chromosome AS
  8273. SELECT feature.feature_id AS autosynaptic_chromosome_id,
  8274. feature.feature_id,
  8275. feature.dbxref_id,
  8276. feature.organism_id,
  8277. feature.name,
  8278. feature.uniquename,
  8279. feature.residues,
  8280. feature.seqlen,
  8281. feature.md5checksum,
  8282. feature.type_id,
  8283. feature.is_analysis,
  8284. feature.is_obsolete,
  8285. feature.timeaccessioned,
  8286. feature.timelastmodified
  8287. FROM (feature
  8288. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8289. WHERE ((((cvterm.name)::text = 'dexstrosynaptic_chromosome'::text) OR ((cvterm.name)::text = 'laevosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'autosynaptic_chromosome'::text));
  8290. --
  8291. -- Name: b_box; Type: VIEW; Schema: so; Owner: -
  8292. --
  8293. CREATE VIEW b_box AS
  8294. SELECT feature.feature_id AS b_box_id,
  8295. feature.feature_id,
  8296. feature.dbxref_id,
  8297. feature.organism_id,
  8298. feature.name,
  8299. feature.uniquename,
  8300. feature.residues,
  8301. feature.seqlen,
  8302. feature.md5checksum,
  8303. feature.type_id,
  8304. feature.is_analysis,
  8305. feature.is_obsolete,
  8306. feature.timeaccessioned,
  8307. feature.timelastmodified
  8308. FROM (feature
  8309. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8310. WHERE ((cvterm.name)::text = 'B_box'::text);
  8311. --
  8312. -- Name: bac; Type: VIEW; Schema: so; Owner: -
  8313. --
  8314. CREATE VIEW bac AS
  8315. SELECT feature.feature_id AS bac_id,
  8316. feature.feature_id,
  8317. feature.dbxref_id,
  8318. feature.organism_id,
  8319. feature.name,
  8320. feature.uniquename,
  8321. feature.residues,
  8322. feature.seqlen,
  8323. feature.md5checksum,
  8324. feature.type_id,
  8325. feature.is_analysis,
  8326. feature.is_obsolete,
  8327. feature.timeaccessioned,
  8328. feature.timelastmodified
  8329. FROM (feature
  8330. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8331. WHERE ((cvterm.name)::text = 'BAC'::text);
  8332. --
  8333. -- Name: bac_cloned_genomic_insert; Type: VIEW; Schema: so; Owner: -
  8334. --
  8335. CREATE VIEW bac_cloned_genomic_insert AS
  8336. SELECT feature.feature_id AS bac_cloned_genomic_insert_id,
  8337. feature.feature_id,
  8338. feature.dbxref_id,
  8339. feature.organism_id,
  8340. feature.name,
  8341. feature.uniquename,
  8342. feature.residues,
  8343. feature.seqlen,
  8344. feature.md5checksum,
  8345. feature.type_id,
  8346. feature.is_analysis,
  8347. feature.is_obsolete,
  8348. feature.timeaccessioned,
  8349. feature.timelastmodified
  8350. FROM (feature
  8351. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8352. WHERE ((cvterm.name)::text = 'BAC_cloned_genomic_insert'::text);
  8353. --
  8354. -- Name: bac_end; Type: VIEW; Schema: so; Owner: -
  8355. --
  8356. CREATE VIEW bac_end AS
  8357. SELECT feature.feature_id AS bac_end_id,
  8358. feature.feature_id,
  8359. feature.dbxref_id,
  8360. feature.organism_id,
  8361. feature.name,
  8362. feature.uniquename,
  8363. feature.residues,
  8364. feature.seqlen,
  8365. feature.md5checksum,
  8366. feature.type_id,
  8367. feature.is_analysis,
  8368. feature.is_obsolete,
  8369. feature.timeaccessioned,
  8370. feature.timelastmodified
  8371. FROM (feature
  8372. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8373. WHERE ((cvterm.name)::text = 'BAC_end'::text);
  8374. --
  8375. -- Name: bacterial_rnapol_promoter; Type: VIEW; Schema: so; Owner: -
  8376. --
  8377. CREATE VIEW bacterial_rnapol_promoter AS
  8378. SELECT feature.feature_id AS bacterial_rnapol_promoter_id,
  8379. feature.feature_id,
  8380. feature.dbxref_id,
  8381. feature.organism_id,
  8382. feature.name,
  8383. feature.uniquename,
  8384. feature.residues,
  8385. feature.seqlen,
  8386. feature.md5checksum,
  8387. feature.type_id,
  8388. feature.is_analysis,
  8389. feature.is_obsolete,
  8390. feature.timeaccessioned,
  8391. feature.timelastmodified
  8392. FROM (feature
  8393. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8394. WHERE ((((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text));
  8395. --
  8396. -- Name: bacterial_rnapol_promoter_sigma54; Type: VIEW; Schema: so; Owner: -
  8397. --
  8398. CREATE VIEW bacterial_rnapol_promoter_sigma54 AS
  8399. SELECT feature.feature_id AS bacterial_rnapol_promoter_sigma54_id,
  8400. feature.feature_id,
  8401. feature.dbxref_id,
  8402. feature.organism_id,
  8403. feature.name,
  8404. feature.uniquename,
  8405. feature.residues,
  8406. feature.seqlen,
  8407. feature.md5checksum,
  8408. feature.type_id,
  8409. feature.is_analysis,
  8410. feature.is_obsolete,
  8411. feature.timeaccessioned,
  8412. feature.timelastmodified
  8413. FROM (feature
  8414. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8415. WHERE ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text);
  8416. --
  8417. -- Name: bacterial_rnapol_promoter_sigma_70; Type: VIEW; Schema: so; Owner: -
  8418. --
  8419. CREATE VIEW bacterial_rnapol_promoter_sigma_70 AS
  8420. SELECT feature.feature_id AS bacterial_rnapol_promoter_sigma_70_id,
  8421. feature.feature_id,
  8422. feature.dbxref_id,
  8423. feature.organism_id,
  8424. feature.name,
  8425. feature.uniquename,
  8426. feature.residues,
  8427. feature.seqlen,
  8428. feature.md5checksum,
  8429. feature.type_id,
  8430. feature.is_analysis,
  8431. feature.is_obsolete,
  8432. feature.timeaccessioned,
  8433. feature.timelastmodified
  8434. FROM (feature
  8435. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8436. WHERE ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text);
  8437. --
  8438. -- Name: bacterial_terminator; Type: VIEW; Schema: so; Owner: -
  8439. --
  8440. CREATE VIEW bacterial_terminator AS
  8441. SELECT feature.feature_id AS bacterial_terminator_id,
  8442. feature.feature_id,
  8443. feature.dbxref_id,
  8444. feature.organism_id,
  8445. feature.name,
  8446. feature.uniquename,
  8447. feature.residues,
  8448. feature.seqlen,
  8449. feature.md5checksum,
  8450. feature.type_id,
  8451. feature.is_analysis,
  8452. feature.is_obsolete,
  8453. feature.timeaccessioned,
  8454. feature.timelastmodified
  8455. FROM (feature
  8456. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8457. WHERE ((((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text));
  8458. --
  8459. -- Name: base; Type: VIEW; Schema: so; Owner: -
  8460. --
  8461. CREATE VIEW base AS
  8462. SELECT feature.feature_id AS base_id,
  8463. feature.feature_id,
  8464. feature.dbxref_id,
  8465. feature.organism_id,
  8466. feature.name,
  8467. feature.uniquename,
  8468. feature.residues,
  8469. feature.seqlen,
  8470. feature.md5checksum,
  8471. feature.type_id,
  8472. feature.is_analysis,
  8473. feature.is_obsolete,
  8474. feature.timeaccessioned,
  8475. feature.timelastmodified
  8476. FROM (feature
  8477. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8478. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'modified_RNA_base_feature'::text) OR ((cvterm.name)::text = 'inosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanine'::text)) OR ((cvterm.name)::text = 'ribothymidine'::text)) OR ((cvterm.name)::text = 'modified_adenosine'::text)) OR ((cvterm.name)::text = 'modified_cytidine'::text)) OR ((cvterm.name)::text = 'modified_guanosine'::text)) OR ((cvterm.name)::text = 'modified_uridine'::text)) OR ((cvterm.name)::text = 'modified_inosine'::text)) OR ((cvterm.name)::text = 'methylinosine'::text)) OR ((cvterm.name)::text = 'one_methylinosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylinosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylinosine'::text)) OR ((cvterm.name)::text = 'one_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'N6_glycinylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_threonyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyl_N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_hydroxynorvalylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosyladenosine_phosphate'::text)) OR ((cvterm.name)::text = 'N6_N6_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_2_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_N6_2_prime_O_trimethyladenosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_acetyladenosine'::text)) OR ((cvterm.name)::text = 'three_methylcytidine'::text)) OR ((cvterm.name)::text = 'five_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_thiocytidine'::text)) OR ((cvterm.name)::text = 'N4_acetylcytidine'::text)) OR ((cvterm.name)::text = 'five_formylcytidine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'N4_acetyl_2_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'lysidine'::text)) OR ((cvterm.name)::text = 'N4_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_2_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'five_hydroxymethylcytidine'::text)) OR ((cvterm.name)::text = 'five_formyl_two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_N4_2_prime_O_trimethylcytidine'::text)) OR ((cvterm.name)::text = 'seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'one_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_methylguanosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_2_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_2_prime_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosylguanosine_phosphate'::text)) OR ((cvterm.name)::text = 'wybutosine'::text)) OR ((cvterm.name)::text = 'peroxywybutosine'::text)) OR ((cvterm.name)::text = 'hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'undermodified_hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'wyosine'::text)) OR ((cvterm.name)::text = 'methylwyosine'::text)) OR ((cvterm.name)::text = 'N2_7_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_7_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'four_demethylwyosine'::text)) OR ((cvterm.name)::text = 'isowyosine'::text)) OR ((cvterm.name)::text = 'N2_7_2prirme_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'queuosine'::text)) OR ((cvterm.name)::text = 'epoxyqueuosine'::text)) OR ((cvterm.name)::text = 'galactosyl_queuosine'::text)) OR ((cvterm.name)::text = 'mannosyl_queuosine'::text)) OR ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'archaeosine'::text)) OR ((cvterm.name)::text = 'dihydrouridine'::text)) OR ((cvterm.name)::text = 'pseudouridine'::text)) OR ((cvterm.name)::text = 'five_methyluridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'one_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_thiouridine'::text)) OR ((cvterm.name)::text = 'four_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methyl_2_thiouridine'::text)) OR ((cvterm.name)::text = 'two_thio_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'three_three_amino_three_carboxypropyl_uridine'::text)) OR ((cvterm.name)::text = 'five_hydroxyuridine'::text)) OR ((cvterm.name)::text = 'five_methoxyuridine'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_aminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_selenouridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'three_methyluridine'::text)) OR ((cvterm.name)::text = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethyluridine'::text)) OR ((cvterm.name)::text = 'three_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'five_methyldihydrouridine'::text)) OR ((cvterm.name)::text = 'three_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyluridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'base'::text));
  8479. --
  8480. -- Name: base_call_error_correction; Type: VIEW; Schema: so; Owner: -
  8481. --
  8482. CREATE VIEW base_call_error_correction AS
  8483. SELECT feature.feature_id AS base_call_error_correction_id,
  8484. feature.feature_id,
  8485. feature.dbxref_id,
  8486. feature.organism_id,
  8487. feature.name,
  8488. feature.uniquename,
  8489. feature.residues,
  8490. feature.seqlen,
  8491. feature.md5checksum,
  8492. feature.type_id,
  8493. feature.is_analysis,
  8494. feature.is_obsolete,
  8495. feature.timeaccessioned,
  8496. feature.timelastmodified
  8497. FROM (feature
  8498. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8499. WHERE ((cvterm.name)::text = 'base_call_error_correction'::text);
  8500. --
  8501. -- Name: base_pair; Type: VIEW; Schema: so; Owner: -
  8502. --
  8503. CREATE VIEW base_pair AS
  8504. SELECT feature.feature_id AS base_pair_id,
  8505. feature.feature_id,
  8506. feature.dbxref_id,
  8507. feature.organism_id,
  8508. feature.name,
  8509. feature.uniquename,
  8510. feature.residues,
  8511. feature.seqlen,
  8512. feature.md5checksum,
  8513. feature.type_id,
  8514. feature.is_analysis,
  8515. feature.is_obsolete,
  8516. feature.timeaccessioned,
  8517. feature.timelastmodified
  8518. FROM (feature
  8519. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8520. WHERE (((((((cvterm.name)::text = 'WC_base_pair'::text) OR ((cvterm.name)::text = 'sugar_edge_base_pair'::text)) OR ((cvterm.name)::text = 'Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'reverse_Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'wobble_base_pair'::text)) OR ((cvterm.name)::text = 'base_pair'::text));
  8521. --
  8522. -- Name: benign_variant; Type: VIEW; Schema: so; Owner: -
  8523. --
  8524. CREATE VIEW benign_variant AS
  8525. SELECT feature.feature_id AS benign_variant_id,
  8526. feature.feature_id,
  8527. feature.dbxref_id,
  8528. feature.organism_id,
  8529. feature.name,
  8530. feature.uniquename,
  8531. feature.residues,
  8532. feature.seqlen,
  8533. feature.md5checksum,
  8534. feature.type_id,
  8535. feature.is_analysis,
  8536. feature.is_obsolete,
  8537. feature.timeaccessioned,
  8538. feature.timelastmodified
  8539. FROM (feature
  8540. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8541. WHERE ((cvterm.name)::text = 'benign_variant'::text);
  8542. --
  8543. -- Name: beta_bulge; Type: VIEW; Schema: so; Owner: -
  8544. --
  8545. CREATE VIEW beta_bulge AS
  8546. SELECT feature.feature_id AS beta_bulge_id,
  8547. feature.feature_id,
  8548. feature.dbxref_id,
  8549. feature.organism_id,
  8550. feature.name,
  8551. feature.uniquename,
  8552. feature.residues,
  8553. feature.seqlen,
  8554. feature.md5checksum,
  8555. feature.type_id,
  8556. feature.is_analysis,
  8557. feature.is_obsolete,
  8558. feature.timeaccessioned,
  8559. feature.timelastmodified
  8560. FROM (feature
  8561. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8562. WHERE ((cvterm.name)::text = 'beta_bulge'::text);
  8563. --
  8564. -- Name: beta_bulge_loop; Type: VIEW; Schema: so; Owner: -
  8565. --
  8566. CREATE VIEW beta_bulge_loop AS
  8567. SELECT feature.feature_id AS beta_bulge_loop_id,
  8568. feature.feature_id,
  8569. feature.dbxref_id,
  8570. feature.organism_id,
  8571. feature.name,
  8572. feature.uniquename,
  8573. feature.residues,
  8574. feature.seqlen,
  8575. feature.md5checksum,
  8576. feature.type_id,
  8577. feature.is_analysis,
  8578. feature.is_obsolete,
  8579. feature.timeaccessioned,
  8580. feature.timelastmodified
  8581. FROM (feature
  8582. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8583. WHERE ((((cvterm.name)::text = 'beta_bulge_loop_five'::text) OR ((cvterm.name)::text = 'beta_bulge_loop_six'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop'::text));
  8584. --
  8585. -- Name: beta_bulge_loop_five; Type: VIEW; Schema: so; Owner: -
  8586. --
  8587. CREATE VIEW beta_bulge_loop_five AS
  8588. SELECT feature.feature_id AS beta_bulge_loop_five_id,
  8589. feature.feature_id,
  8590. feature.dbxref_id,
  8591. feature.organism_id,
  8592. feature.name,
  8593. feature.uniquename,
  8594. feature.residues,
  8595. feature.seqlen,
  8596. feature.md5checksum,
  8597. feature.type_id,
  8598. feature.is_analysis,
  8599. feature.is_obsolete,
  8600. feature.timeaccessioned,
  8601. feature.timelastmodified
  8602. FROM (feature
  8603. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8604. WHERE ((cvterm.name)::text = 'beta_bulge_loop_five'::text);
  8605. --
  8606. -- Name: beta_bulge_loop_six; Type: VIEW; Schema: so; Owner: -
  8607. --
  8608. CREATE VIEW beta_bulge_loop_six AS
  8609. SELECT feature.feature_id AS beta_bulge_loop_six_id,
  8610. feature.feature_id,
  8611. feature.dbxref_id,
  8612. feature.organism_id,
  8613. feature.name,
  8614. feature.uniquename,
  8615. feature.residues,
  8616. feature.seqlen,
  8617. feature.md5checksum,
  8618. feature.type_id,
  8619. feature.is_analysis,
  8620. feature.is_obsolete,
  8621. feature.timeaccessioned,
  8622. feature.timelastmodified
  8623. FROM (feature
  8624. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8625. WHERE ((cvterm.name)::text = 'beta_bulge_loop_six'::text);
  8626. --
  8627. -- Name: beta_strand; Type: VIEW; Schema: so; Owner: -
  8628. --
  8629. CREATE VIEW beta_strand AS
  8630. SELECT feature.feature_id AS beta_strand_id,
  8631. feature.feature_id,
  8632. feature.dbxref_id,
  8633. feature.organism_id,
  8634. feature.name,
  8635. feature.uniquename,
  8636. feature.residues,
  8637. feature.seqlen,
  8638. feature.md5checksum,
  8639. feature.type_id,
  8640. feature.is_analysis,
  8641. feature.is_obsolete,
  8642. feature.timeaccessioned,
  8643. feature.timelastmodified
  8644. FROM (feature
  8645. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8646. WHERE ((((cvterm.name)::text = 'antiparallel_beta_strand'::text) OR ((cvterm.name)::text = 'parallel_beta_strand'::text)) OR ((cvterm.name)::text = 'beta_strand'::text));
  8647. --
  8648. -- Name: beta_turn; Type: VIEW; Schema: so; Owner: -
  8649. --
  8650. CREATE VIEW beta_turn AS
  8651. SELECT feature.feature_id AS beta_turn_id,
  8652. feature.feature_id,
  8653. feature.dbxref_id,
  8654. feature.organism_id,
  8655. feature.name,
  8656. feature.uniquename,
  8657. feature.residues,
  8658. feature.seqlen,
  8659. feature.md5checksum,
  8660. feature.type_id,
  8661. feature.is_analysis,
  8662. feature.is_obsolete,
  8663. feature.timeaccessioned,
  8664. feature.timelastmodified
  8665. FROM (feature
  8666. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8667. WHERE ((((((((((((cvterm.name)::text = 'beta_turn_left_handed_type_one'::text) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six'::text)) OR ((cvterm.name)::text = 'beta_turn_type_eight'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_b'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_one'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'beta_turn'::text));
  8668. --
  8669. -- Name: beta_turn_left_handed_type_one; Type: VIEW; Schema: so; Owner: -
  8670. --
  8671. CREATE VIEW beta_turn_left_handed_type_one AS
  8672. SELECT feature.feature_id AS beta_turn_left_handed_type_one_id,
  8673. feature.feature_id,
  8674. feature.dbxref_id,
  8675. feature.organism_id,
  8676. feature.name,
  8677. feature.uniquename,
  8678. feature.residues,
  8679. feature.seqlen,
  8680. feature.md5checksum,
  8681. feature.type_id,
  8682. feature.is_analysis,
  8683. feature.is_obsolete,
  8684. feature.timeaccessioned,
  8685. feature.timelastmodified
  8686. FROM (feature
  8687. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8688. WHERE ((cvterm.name)::text = 'beta_turn_left_handed_type_one'::text);
  8689. --
  8690. -- Name: beta_turn_left_handed_type_two; Type: VIEW; Schema: so; Owner: -
  8691. --
  8692. CREATE VIEW beta_turn_left_handed_type_two AS
  8693. SELECT feature.feature_id AS beta_turn_left_handed_type_two_id,
  8694. feature.feature_id,
  8695. feature.dbxref_id,
  8696. feature.organism_id,
  8697. feature.name,
  8698. feature.uniquename,
  8699. feature.residues,
  8700. feature.seqlen,
  8701. feature.md5checksum,
  8702. feature.type_id,
  8703. feature.is_analysis,
  8704. feature.is_obsolete,
  8705. feature.timeaccessioned,
  8706. feature.timelastmodified
  8707. FROM (feature
  8708. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8709. WHERE ((cvterm.name)::text = 'beta_turn_left_handed_type_two'::text);
  8710. --
  8711. -- Name: beta_turn_right_handed_type_one; Type: VIEW; Schema: so; Owner: -
  8712. --
  8713. CREATE VIEW beta_turn_right_handed_type_one AS
  8714. SELECT feature.feature_id AS beta_turn_right_handed_type_one_id,
  8715. feature.feature_id,
  8716. feature.dbxref_id,
  8717. feature.organism_id,
  8718. feature.name,
  8719. feature.uniquename,
  8720. feature.residues,
  8721. feature.seqlen,
  8722. feature.md5checksum,
  8723. feature.type_id,
  8724. feature.is_analysis,
  8725. feature.is_obsolete,
  8726. feature.timeaccessioned,
  8727. feature.timelastmodified
  8728. FROM (feature
  8729. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8730. WHERE ((cvterm.name)::text = 'beta_turn_right_handed_type_one'::text);
  8731. --
  8732. -- Name: beta_turn_right_handed_type_two; Type: VIEW; Schema: so; Owner: -
  8733. --
  8734. CREATE VIEW beta_turn_right_handed_type_two AS
  8735. SELECT feature.feature_id AS beta_turn_right_handed_type_two_id,
  8736. feature.feature_id,
  8737. feature.dbxref_id,
  8738. feature.organism_id,
  8739. feature.name,
  8740. feature.uniquename,
  8741. feature.residues,
  8742. feature.seqlen,
  8743. feature.md5checksum,
  8744. feature.type_id,
  8745. feature.is_analysis,
  8746. feature.is_obsolete,
  8747. feature.timeaccessioned,
  8748. feature.timelastmodified
  8749. FROM (feature
  8750. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8751. WHERE ((cvterm.name)::text = 'beta_turn_right_handed_type_two'::text);
  8752. --
  8753. -- Name: beta_turn_type_eight; Type: VIEW; Schema: so; Owner: -
  8754. --
  8755. CREATE VIEW beta_turn_type_eight AS
  8756. SELECT feature.feature_id AS beta_turn_type_eight_id,
  8757. feature.feature_id,
  8758. feature.dbxref_id,
  8759. feature.organism_id,
  8760. feature.name,
  8761. feature.uniquename,
  8762. feature.residues,
  8763. feature.seqlen,
  8764. feature.md5checksum,
  8765. feature.type_id,
  8766. feature.is_analysis,
  8767. feature.is_obsolete,
  8768. feature.timeaccessioned,
  8769. feature.timelastmodified
  8770. FROM (feature
  8771. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8772. WHERE ((cvterm.name)::text = 'beta_turn_type_eight'::text);
  8773. --
  8774. -- Name: beta_turn_type_six; Type: VIEW; Schema: so; Owner: -
  8775. --
  8776. CREATE VIEW beta_turn_type_six AS
  8777. SELECT feature.feature_id AS beta_turn_type_six_id,
  8778. feature.feature_id,
  8779. feature.dbxref_id,
  8780. feature.organism_id,
  8781. feature.name,
  8782. feature.uniquename,
  8783. feature.residues,
  8784. feature.seqlen,
  8785. feature.md5checksum,
  8786. feature.type_id,
  8787. feature.is_analysis,
  8788. feature.is_obsolete,
  8789. feature.timeaccessioned,
  8790. feature.timelastmodified
  8791. FROM (feature
  8792. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8793. WHERE ((((((cvterm.name)::text = 'beta_turn_type_six_a'::text) OR ((cvterm.name)::text = 'beta_turn_type_six_b'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_one'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six'::text));
  8794. --
  8795. -- Name: beta_turn_type_six_a; Type: VIEW; Schema: so; Owner: -
  8796. --
  8797. CREATE VIEW beta_turn_type_six_a AS
  8798. SELECT feature.feature_id AS beta_turn_type_six_a_id,
  8799. feature.feature_id,
  8800. feature.dbxref_id,
  8801. feature.organism_id,
  8802. feature.name,
  8803. feature.uniquename,
  8804. feature.residues,
  8805. feature.seqlen,
  8806. feature.md5checksum,
  8807. feature.type_id,
  8808. feature.is_analysis,
  8809. feature.is_obsolete,
  8810. feature.timeaccessioned,
  8811. feature.timelastmodified
  8812. FROM (feature
  8813. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8814. WHERE ((((cvterm.name)::text = 'beta_turn_type_six_a_one'::text) OR ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a'::text));
  8815. --
  8816. -- Name: beta_turn_type_six_a_one; Type: VIEW; Schema: so; Owner: -
  8817. --
  8818. CREATE VIEW beta_turn_type_six_a_one AS
  8819. SELECT feature.feature_id AS beta_turn_type_six_a_one_id,
  8820. feature.feature_id,
  8821. feature.dbxref_id,
  8822. feature.organism_id,
  8823. feature.name,
  8824. feature.uniquename,
  8825. feature.residues,
  8826. feature.seqlen,
  8827. feature.md5checksum,
  8828. feature.type_id,
  8829. feature.is_analysis,
  8830. feature.is_obsolete,
  8831. feature.timeaccessioned,
  8832. feature.timelastmodified
  8833. FROM (feature
  8834. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8835. WHERE ((cvterm.name)::text = 'beta_turn_type_six_a_one'::text);
  8836. --
  8837. -- Name: beta_turn_type_six_a_two; Type: VIEW; Schema: so; Owner: -
  8838. --
  8839. CREATE VIEW beta_turn_type_six_a_two AS
  8840. SELECT feature.feature_id AS beta_turn_type_six_a_two_id,
  8841. feature.feature_id,
  8842. feature.dbxref_id,
  8843. feature.organism_id,
  8844. feature.name,
  8845. feature.uniquename,
  8846. feature.residues,
  8847. feature.seqlen,
  8848. feature.md5checksum,
  8849. feature.type_id,
  8850. feature.is_analysis,
  8851. feature.is_obsolete,
  8852. feature.timeaccessioned,
  8853. feature.timelastmodified
  8854. FROM (feature
  8855. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8856. WHERE ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text);
  8857. --
  8858. -- Name: beta_turn_type_six_b; Type: VIEW; Schema: so; Owner: -
  8859. --
  8860. CREATE VIEW beta_turn_type_six_b AS
  8861. SELECT feature.feature_id AS beta_turn_type_six_b_id,
  8862. feature.feature_id,
  8863. feature.dbxref_id,
  8864. feature.organism_id,
  8865. feature.name,
  8866. feature.uniquename,
  8867. feature.residues,
  8868. feature.seqlen,
  8869. feature.md5checksum,
  8870. feature.type_id,
  8871. feature.is_analysis,
  8872. feature.is_obsolete,
  8873. feature.timeaccessioned,
  8874. feature.timelastmodified
  8875. FROM (feature
  8876. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8877. WHERE ((cvterm.name)::text = 'beta_turn_type_six_b'::text);
  8878. --
  8879. -- Name: bidirectional_promoter; Type: VIEW; Schema: so; Owner: -
  8880. --
  8881. CREATE VIEW bidirectional_promoter AS
  8882. SELECT feature.feature_id AS bidirectional_promoter_id,
  8883. feature.feature_id,
  8884. feature.dbxref_id,
  8885. feature.organism_id,
  8886. feature.name,
  8887. feature.uniquename,
  8888. feature.residues,
  8889. feature.seqlen,
  8890. feature.md5checksum,
  8891. feature.type_id,
  8892. feature.is_analysis,
  8893. feature.is_obsolete,
  8894. feature.timeaccessioned,
  8895. feature.timelastmodified
  8896. FROM (feature
  8897. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8898. WHERE ((cvterm.name)::text = 'bidirectional_promoter'::text);
  8899. --
  8900. -- Name: binding_site; Type: VIEW; Schema: so; Owner: -
  8901. --
  8902. CREATE VIEW binding_site AS
  8903. SELECT feature.feature_id AS binding_site_id,
  8904. feature.feature_id,
  8905. feature.dbxref_id,
  8906. feature.organism_id,
  8907. feature.name,
  8908. feature.uniquename,
  8909. feature.residues,
  8910. feature.seqlen,
  8911. feature.md5checksum,
  8912. feature.type_id,
  8913. feature.is_analysis,
  8914. feature.is_obsolete,
  8915. feature.timeaccessioned,
  8916. feature.timelastmodified
  8917. FROM (feature
  8918. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8919. WHERE ((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'protein_binding_site'::text) OR ((cvterm.name)::text = 'epitope'::text)) OR ((cvterm.name)::text = 'nucleotide_binding_site'::text)) OR ((cvterm.name)::text = 'metal_binding_site'::text)) OR ((cvterm.name)::text = 'ligand_binding_site'::text)) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'nucleotide_to_protein_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_binding_site'::text)) OR ((cvterm.name)::text = 'TF_binding_site'::text)) OR ((cvterm.name)::text = 'histone_binding_site'::text)) OR ((cvterm.name)::text = 'insulator_binding_site'::text)) OR ((cvterm.name)::text = 'enhancer_binding_site'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_sensitive_site'::text)) OR ((cvterm.name)::text = 'homing_endonuclease_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'group_1_intron_homing_endonuclease_target_region'::text)) OR ((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'miRNA_target_site'::text)) OR ((cvterm.name)::text = 'DNA_binding_site'::text)) OR ((cvterm.name)::text = 'primer_binding_site'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'binding_site'::text));
  8920. --
  8921. -- Name: biochemical_region_of_peptide; Type: VIEW; Schema: so; Owner: -
  8922. --
  8923. CREATE VIEW biochemical_region_of_peptide AS
  8924. SELECT feature.feature_id AS biochemical_region_of_peptide_id,
  8925. feature.feature_id,
  8926. feature.dbxref_id,
  8927. feature.organism_id,
  8928. feature.name,
  8929. feature.uniquename,
  8930. feature.residues,
  8931. feature.seqlen,
  8932. feature.md5checksum,
  8933. feature.type_id,
  8934. feature.is_analysis,
  8935. feature.is_obsolete,
  8936. feature.timeaccessioned,
  8937. feature.timelastmodified
  8938. FROM (feature
  8939. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8940. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'post_translationally_modified_region'::text) OR ((cvterm.name)::text = 'conformational_switch'::text)) OR ((cvterm.name)::text = 'molecular_contact_region'::text)) OR ((cvterm.name)::text = 'polypeptide_binding_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_catalytic_motif'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text)) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'biochemical_region_of_peptide'::text));
  8941. --
  8942. -- Name: biological_region; Type: VIEW; Schema: so; Owner: -
  8943. --
  8944. CREATE VIEW biological_region AS
  8945. SELECT feature.feature_id AS biological_region_id,
  8946. feature.feature_id,
  8947. feature.dbxref_id,
  8948. feature.organism_id,
  8949. feature.name,
  8950. feature.uniquename,
  8951. feature.residues,
  8952. feature.seqlen,
  8953. feature.md5checksum,
  8954. feature.type_id,
  8955. feature.is_analysis,
  8956. feature.is_obsolete,
  8957. feature.timeaccessioned,
  8958. feature.timelastmodified
  8959. FROM (feature
  8960. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8961. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'sequence_secondary_structure'::text) OR ((cvterm.name)::text = 'linkage_group'::text)) OR ((cvterm.name)::text = 'polypeptide'::text)) OR ((cvterm.name)::text = 'deletion'::text)) OR ((cvterm.name)::text = 'origin_of_replication'::text)) OR ((cvterm.name)::text = 'recombination_feature'::text)) OR ((cvterm.name)::text = 'CpG_island'::text)) OR ((cvterm.name)::text = 'pseudogene'::text)) OR ((cvterm.name)::text = 'binding_site'::text)) OR ((cvterm.name)::text = 'pseudogenic_region'::text)) OR ((cvterm.name)::text = 'cap'::text)) OR ((cvterm.name)::text = 'intergenic_region'::text)) OR ((cvterm.name)::text = 'oligo_U_tail'::text)) OR ((cvterm.name)::text = 'polyA_sequence'::text)) OR ((cvterm.name)::text = 'repeat_region'::text)) OR ((cvterm.name)::text = 'insertion'::text)) OR ((cvterm.name)::text = 'gene'::text)) OR ((cvterm.name)::text = 'repeat_unit'::text)) OR ((cvterm.name)::text = 'QTL'::text)) OR ((cvterm.name)::text = 'chromosome_part'::text)) OR ((cvterm.name)::text = 'gene_member_region'::text)) OR ((cvterm.name)::text = 'transcript_region'::text)) OR ((cvterm.name)::text = 'polypeptide_region'::text)) OR ((cvterm.name)::text = 'gene_component_region'::text)) OR ((cvterm.name)::text = 'mobile_genetic_element'::text)) OR ((cvterm.name)::text = 'replicon'::text)) OR ((cvterm.name)::text = 'base'::text)) OR ((cvterm.name)::text = 'amino_acid'::text)) OR ((cvterm.name)::text = 'genetic_marker'::text)) OR ((cvterm.name)::text = 'sequence_motif'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_recognition_site'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_single_strand_overhang'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_region'::text)) OR ((cvterm.name)::text = 'open_chromatin_region'::text)) OR ((cvterm.name)::text = 'gene_group'::text)) OR ((cvterm.name)::text = 'substitution'::text)) OR ((cvterm.name)::text = 'inversion'::text)) OR ((cvterm.name)::text = 'retron'::text)) OR ((cvterm.name)::text = 'G_quartet'::text)) OR ((cvterm.name)::text = 'base_pair'::text)) OR ((cvterm.name)::text = 'RNA_sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'DNA_sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'pseudoknot'::text)) OR ((cvterm.name)::text = 'WC_base_pair'::text)) OR ((cvterm.name)::text = 'sugar_edge_base_pair'::text)) OR ((cvterm.name)::text = 'Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'reverse_Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'wobble_base_pair'::text)) OR ((cvterm.name)::text = 'stem_loop'::text)) OR ((cvterm.name)::text = 'tetraloop'::text)) OR ((cvterm.name)::text = 'i_motif'::text)) OR ((cvterm.name)::text = 'recoding_pseudoknot'::text)) OR ((cvterm.name)::text = 'H_pseudoknot'::text)) OR ((cvterm.name)::text = 'D_loop'::text)) OR ((cvterm.name)::text = 'ARS'::text)) OR ((cvterm.name)::text = 'oriT'::text)) OR ((cvterm.name)::text = 'amplification_origin'::text)) OR ((cvterm.name)::text = 'oriV'::text)) OR ((cvterm.name)::text = 'oriC'::text)) OR ((cvterm.name)::text = 'recombination_hotspot'::text)) OR ((cvterm.name)::text = 'haplotype_block'::text)) OR ((cvterm.name)::text = 'sequence_rearrangement_feature'::text)) OR ((cvterm.name)::text = 'iDNA'::text)) OR ((cvterm.name)::text = 'specific_recombination_site'::text)) OR ((cvterm.name)::text = 'chromosome_breakage_sequence'::text)) OR ((cvterm.name)::text = 'internal_eliminated_sequence'::text)) OR ((cvterm.name)::text = 'macronucleus_destined_segment'::text)) OR ((cvterm.name)::text = 'recombination_feature_of_rearranged_gene'::text)) OR ((cvterm.name)::text = 'site_specific_recombination_target_region'::text)) OR ((cvterm.name)::text = 'recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text)) OR ((cvterm.name)::text = 'D_gene'::text)) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'three_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'VD_gene'::text)) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'integration_excision_site'::text)) OR ((cvterm.name)::text = 'resolution_site'::text)) OR ((cvterm.name)::text = 'inversion_site'::text)) OR ((cvterm.name)::text = 'inversion_site_part'::text)) OR ((cvterm.name)::text = 'attI_site'::text)) OR ((cvterm.name)::text = 'attP_site'::text)) OR ((cvterm.name)::text = 'attB_site'::text)) OR ((cvterm.name)::text = 'attL_site'::text)) OR ((cvterm.name)::text = 'attR_site'::text)) OR ((cvterm.name)::text = 'attC_site'::text)) OR ((cvterm.name)::text = 'attCtn_site'::text)) OR ((cvterm.name)::text = 'loxP_site'::text)) OR ((cvterm.name)::text = 'dif_site'::text)) OR ((cvterm.name)::text = 'FRT_site'::text)) OR ((cvterm.name)::text = 'IRLinv_site'::text)) OR ((cvterm.name)::text = 'IRRinv_site'::text)) OR ((cvterm.name)::text = 'processed_pseudogene'::text)) OR ((cvterm.name)::text = 'non_processed_pseudogene'::text)) OR ((cvterm.name)::text = 'pseudogene_by_unequal_crossing_over'::text)) OR ((cvterm.name)::text = 'nuclear_mt_pseudogene'::text)) OR ((cvterm.name)::text = 'cassette_pseudogene'::text)) OR ((cvterm.name)::text = 'duplicated_pseudogene'::text)) OR ((cvterm.name)::text = 'unitary_pseudogene'::text)) OR ((cvterm.name)::text = 'protein_binding_site'::text)) OR ((cvterm.name)::text = 'epitope'::text)) OR ((cvterm.name)::text = 'nucleotide_binding_site'::text)) OR ((cvterm.name)::text = 'metal_binding_site'::text)) OR ((cvterm.name)::text = 'ligand_binding_site'::text)) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'nucleotide_to_protein_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_binding_site'::text)) OR ((cvterm.name)::text = 'TF_binding_site'::text)) OR ((cvterm.name)::text = 'histone_binding_site'::text)) OR ((cvterm.name)::text = 'insulator_binding_site'::text)) OR ((cvterm.name)::text = 'enhancer_binding_site'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_sensitive_site'::text)) OR ((cvterm.name)::text = 'homing_endonuclease_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'group_1_intron_homing_endonuclease_target_region'::text)) OR ((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'miRNA_target_site'::text)) OR ((cvterm.name)::text = 'DNA_binding_site'::text)) OR ((cvterm.name)::text = 'primer_binding_site'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'decayed_exon'::text)) OR ((cvterm.name)::text = 'pseudogenic_exon'::text)) OR ((cvterm.name)::text = 'pseudogenic_transcript'::text)) OR ((cvterm.name)::text = 'pseudogenic_rRNA'::text)) OR ((cvterm.name)::text = 'pseudogenic_tRNA'::text)) OR ((cvterm.name)::text = 'long_terminal_repeat'::text)) OR ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text)) OR ((cvterm.name)::text = 'inverted_repeat'::text)) OR ((cvterm.name)::text = 'direct_repeat'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon_polymeric_tract'::text)) OR ((cvterm.name)::text = 'dispersed_repeat'::text)) OR ((cvterm.name)::text = 'tandem_repeat'::text)) OR ((cvterm.name)::text = 'X_element_combinatorial_repeat'::text)) OR ((cvterm.name)::text = 'Y_prime_element'::text)) OR ((cvterm.name)::text = 'telomeric_repeat'::text)) OR ((cvterm.name)::text = 'nested_repeat'::text)) OR ((cvterm.name)::text = 'centromeric_repeat'::text)) OR ((cvterm.name)::text = 'five_prime_LTR'::text)) OR ((cvterm.name)::text = 'three_prime_LTR'::text)) OR ((cvterm.name)::text = 'solo_LTR'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'five_prime_terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'three_prime_terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'target_site_duplication'::text)) OR ((cvterm.name)::text = 'CRISPR'::text)) OR ((cvterm.name)::text = 'satellite_DNA'::text)) OR ((cvterm.name)::text = 'microsatellite'::text)) OR ((cvterm.name)::text = 'minisatellite'::text)) OR ((cvterm.name)::text = 'dinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'trinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'tetranucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'nested_tandem_repeat'::text)) OR ((cvterm.name)::text = 'regional_centromere_inner_repeat_region'::text)) OR ((cvterm.name)::text = 'regional_centromere_outer_repeat_region'::text)) OR ((cvterm.name)::text = 'transgenic_insertion'::text)) OR ((cvterm.name)::text = 'duplication'::text)) OR ((cvterm.name)::text = 'tandem_duplication'::text)) OR ((cvterm.name)::text = 'direct_tandem_duplication'::text)) OR ((cvterm.name)::text = 'inverted_tandem_duplication'::text)) OR ((cvterm.name)::text = 'nuclear_gene'::text)) OR ((cvterm.name)::text = 'mt_gene'::text)) OR ((cvterm.name)::text = 'plastid_gene'::text)) OR ((cvterm.name)::text = 'nucleomorph_gene'::text)) OR ((cvterm.name)::text = 'plasmid_gene'::text)) OR ((cvterm.name)::text = 'proviral_gene'::text)) OR ((cvterm.name)::text = 'transposable_element_gene'::text)) OR ((cvterm.name)::text = 'silenced_gene'::text)) OR ((cvterm.name)::text = 'engineered_gene'::text)) OR ((cvterm.name)::text = 'foreign_gene'::text)) OR ((cvterm.name)::text = 'fusion_gene'::text)) OR ((cvterm.name)::text = 'recombinationally_rearranged_gene'::text)) OR ((cvterm.name)::text = 'gene_with_trans_spliced_transcript'::text)) OR ((cvterm.name)::text = 'gene_with_polycistronic_transcript'::text)) OR ((cvterm.name)::text = 'rescue_gene'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_gene'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated_gene'::text)) OR ((cvterm.name)::text = 'positively_autoregulated_gene'::text)) OR ((cvterm.name)::text = 'translationally_regulated_gene'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_gene'::text)) OR ((cvterm.name)::text = 'transgene'::text)) OR ((cvterm.name)::text = 'predicted_gene'::text)) OR 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((cvterm.name)::text = 'proviral_region'::text)) OR ((cvterm.name)::text = 'integron'::text)) OR ((cvterm.name)::text = 'genomic_island'::text)) OR ((cvterm.name)::text = 'integrated_plasmid'::text)) OR ((cvterm.name)::text = 'cointegrated_plasmid'::text)) OR ((cvterm.name)::text = 'retrotransposon'::text)) OR ((cvterm.name)::text = 'DNA_transposon'::text)) OR ((cvterm.name)::text = 'foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'transgenic_transposable_element'::text)) OR ((cvterm.name)::text = 'natural_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'nested_transposon'::text)) OR ((cvterm.name)::text = 'LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'LINE_element'::text)) OR ((cvterm.name)::text = 'SINE_element'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat_element'::text)) OR ((cvterm.name)::text = 'foldback_element'::text)) OR ((cvterm.name)::text = 'conjugative_transposon'::text)) OR ((cvterm.name)::text = 'helitron'::text)) OR ((cvterm.name)::text = 'p_element'::text)) OR ((cvterm.name)::text = 'MITE'::text)) OR ((cvterm.name)::text = 'insertion_sequence'::text)) OR ((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'prophage'::text)) OR ((cvterm.name)::text = 'pathogenic_island'::text)) OR ((cvterm.name)::text = 'metabolic_island'::text)) OR ((cvterm.name)::text = 'adaptive_island'::text)) OR ((cvterm.name)::text = 'symbiosis_island'::text)) OR ((cvterm.name)::text = 'cryptic_prophage'::text)) OR ((cvterm.name)::text = 'defective_conjugative_transposon'::text)) OR ((cvterm.name)::text = 'plasmid'::text)) OR ((cvterm.name)::text = 'chromosome'::text)) OR ((cvterm.name)::text = 'vector_replicon'::text)) OR 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((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'YAC'::text)) OR ((cvterm.name)::text = 'BAC'::text)) OR ((cvterm.name)::text = 'PAC'::text)) OR ((cvterm.name)::text = 'cosmid'::text)) OR ((cvterm.name)::text = 'phagemid'::text)) OR ((cvterm.name)::text = 'fosmid'::text)) OR ((cvterm.name)::text = 'lambda_vector'::text)) OR ((cvterm.name)::text = 'plasmid_vector'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'phage_sequence'::text)) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR 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'two_methylthio_N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'N6_glycinylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_threonyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyl_N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_hydroxynorvalylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosyladenosine_phosphate'::text)) OR ((cvterm.name)::text = 'N6_N6_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_2_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_N6_2_prime_O_trimethyladenosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_acetyladenosine'::text)) OR ((cvterm.name)::text = 'three_methylcytidine'::text)) OR ((cvterm.name)::text = 'five_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_thiocytidine'::text)) OR ((cvterm.name)::text = 'N4_acetylcytidine'::text)) OR ((cvterm.name)::text = 'five_formylcytidine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'N4_acetyl_2_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'lysidine'::text)) OR ((cvterm.name)::text = 'N4_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_2_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'five_hydroxymethylcytidine'::text)) OR ((cvterm.name)::text = 'five_formyl_two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text 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((cvterm.name)::text = 'N2_N2_7_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'four_demethylwyosine'::text)) OR ((cvterm.name)::text = 'isowyosine'::text)) OR ((cvterm.name)::text = 'N2_7_2prirme_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'queuosine'::text)) OR ((cvterm.name)::text = 'epoxyqueuosine'::text)) OR ((cvterm.name)::text = 'galactosyl_queuosine'::text)) OR ((cvterm.name)::text = 'mannosyl_queuosine'::text)) OR ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'archaeosine'::text)) OR ((cvterm.name)::text = 'dihydrouridine'::text)) OR ((cvterm.name)::text = 'pseudouridine'::text)) OR ((cvterm.name)::text = 'five_methyluridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethyluridine'::text)) OR 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'heritable_phenotypic_marker'::text)) OR ((cvterm.name)::text = 'DArT_marker'::text)) OR ((cvterm.name)::text = 'nucleotide_motif'::text)) OR ((cvterm.name)::text = 'DNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_motif'::text)) OR ((cvterm.name)::text = 'PSE_motif'::text)) OR ((cvterm.name)::text = 'CAAT_signal'::text)) OR ((cvterm.name)::text = 'minus_10_signal'::text)) OR ((cvterm.name)::text = 'minus_35_signal'::text)) OR ((cvterm.name)::text = 'DRE_motif'::text)) OR ((cvterm.name)::text = 'E_box_motif'::text)) OR ((cvterm.name)::text = 'INR1_motif'::text)) OR ((cvterm.name)::text = 'GAGA_motif'::text)) OR ((cvterm.name)::text = 'octamer_motif'::text)) OR ((cvterm.name)::text = 'retinoic_acid_responsive_element'::text)) OR ((cvterm.name)::text = 'promoter_element'::text)) OR ((cvterm.name)::text = 'DCE_SI'::text)) OR ((cvterm.name)::text = 'DCE_SII'::text)) OR ((cvterm.name)::text = 'DCE_SIII'::text)) OR ((cvterm.name)::text = 'minus_12_signal'::text)) OR ((cvterm.name)::text = 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((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'proximal_promoter_element'::text)) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'A_minor_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_junction_loop'::text)) OR ((cvterm.name)::text = 'hammerhead_ribozyme'::text)) OR ((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'K_turn_RNA_motif'::text)) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_hook_turn'::text)) OR ((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'sticky_end_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'modified_base'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_gene'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'methylated_base_feature'::text)) OR ((cvterm.name)::text = 'methylated_C'::text)) OR ((cvterm.name)::text = 'methylated_A'::text)) OR ((cvterm.name)::text = 'gene_rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'paternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'allelically_excluded_gene'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'operon'::text)) OR ((cvterm.name)::text = 'mating_type_region'::text)) OR ((cvterm.name)::text = 'gene_array'::text)) OR ((cvterm.name)::text = 'gene_subarray'::text)) OR ((cvterm.name)::text = 'gene_cassette_array'::text)) OR ((cvterm.name)::text = 'regulon'::text)) OR ((cvterm.name)::text = 'sequence_length_variation'::text)) OR ((cvterm.name)::text = 'MNP'::text)) OR ((cvterm.name)::text = 'SNV'::text)) OR ((cvterm.name)::text = 'complex_substitution'::text)) OR ((cvterm.name)::text = 'simple_sequence_length_variation'::text)) OR ((cvterm.name)::text = 'SNP'::text)) OR ((cvterm.name)::text = 'point_mutation'::text)) OR ((cvterm.name)::text = 'transition'::text)) OR ((cvterm.name)::text = 'transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'biological_region'::text));
  8962. --
  8963. -- Name: biomaterial_region; Type: VIEW; Schema: so; Owner: -
  8964. --
  8965. CREATE VIEW biomaterial_region AS
  8966. SELECT feature.feature_id AS biomaterial_region_id,
  8967. feature.feature_id,
  8968. feature.dbxref_id,
  8969. feature.organism_id,
  8970. feature.name,
  8971. feature.uniquename,
  8972. feature.residues,
  8973. feature.seqlen,
  8974. feature.md5checksum,
  8975. feature.type_id,
  8976. feature.is_analysis,
  8977. feature.is_obsolete,
  8978. feature.timeaccessioned,
  8979. feature.timelastmodified
  8980. FROM (feature
  8981. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  8982. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'reagent'::text) OR ((cvterm.name)::text = 'engineered_region'::text)) OR ((cvterm.name)::text = 'PCR_product'::text)) OR ((cvterm.name)::text = 'clone'::text)) OR ((cvterm.name)::text = 'rescue_region'::text)) OR ((cvterm.name)::text = 'oligo'::text)) OR ((cvterm.name)::text = 'clone_insert'::text)) OR ((cvterm.name)::text = 'cloned_region'::text)) OR ((cvterm.name)::text = 'databank_entry'::text)) OR ((cvterm.name)::text = 'RAPD'::text)) OR ((cvterm.name)::text = 'genomic_clone'::text)) OR ((cvterm.name)::text = 'cDNA_clone'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'validated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'invalidated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'three_prime_RACE_clone'::text)) OR ((cvterm.name)::text = 'chimeric_cDNA_clone'::text)) OR ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'aptamer'::text)) OR ((cvterm.name)::text = 'probe'::text)) OR ((cvterm.name)::text = 'tag'::text)) OR ((cvterm.name)::text = 'ss_oligo'::text)) OR ((cvterm.name)::text = 'ds_oligo'::text)) OR ((cvterm.name)::text = 'DNAzyme'::text)) OR ((cvterm.name)::text = 'synthetic_oligo'::text)) OR ((cvterm.name)::text = 'DNA_aptamer'::text)) OR ((cvterm.name)::text = 'RNA_aptamer'::text)) OR ((cvterm.name)::text = 'microarray_oligo'::text)) OR ((cvterm.name)::text = 'SAGE_tag'::text)) OR ((cvterm.name)::text = 'STS'::text)) OR ((cvterm.name)::text = 'EST'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'five_prime_EST'::text)) OR ((cvterm.name)::text = 'three_prime_EST'::text)) OR ((cvterm.name)::text = 'UST'::text)) OR ((cvterm.name)::text = 'RST'::text)) OR ((cvterm.name)::text = 'three_prime_UST'::text)) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'three_prime_RST'::text)) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'primer'::text)) OR ((cvterm.name)::text = 'sequencing_primer'::text)) OR ((cvterm.name)::text = 'forward_primer'::text)) OR ((cvterm.name)::text = 'reverse_primer'::text)) OR ((cvterm.name)::text = 'ASPE_primer'::text)) OR ((cvterm.name)::text = 'dCAPS_primer'::text)) OR ((cvterm.name)::text = 'RNAi_reagent'::text)) OR ((cvterm.name)::text = 'DNA_constraint_sequence'::text)) OR ((cvterm.name)::text = 'morpholino_oligo'::text)) OR ((cvterm.name)::text = 'PNA_oligo'::text)) OR ((cvterm.name)::text = 'LNA_oligo'::text)) OR ((cvterm.name)::text = 'TNA_oligo'::text)) OR ((cvterm.name)::text = 'GNA_oligo'::text)) OR ((cvterm.name)::text = 'R_GNA_oligo'::text)) OR ((cvterm.name)::text = 'S_GNA_oligo'::text)) OR ((cvterm.name)::text = 'cloned_cDNA_insert'::text)) OR ((cvterm.name)::text = 'cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'BAC_cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_gene'::text)) OR ((cvterm.name)::text = 'engineered_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_region'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_fusion_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'biomaterial_region'::text));
  8983. --
  8984. -- Name: bipartite_duplication; Type: VIEW; Schema: so; Owner: -
  8985. --
  8986. CREATE VIEW bipartite_duplication AS
  8987. SELECT feature.feature_id AS bipartite_duplication_id,
  8988. feature.feature_id,
  8989. feature.dbxref_id,
  8990. feature.organism_id,
  8991. feature.name,
  8992. feature.uniquename,
  8993. feature.residues,
  8994. feature.seqlen,
  8995. feature.md5checksum,
  8996. feature.type_id,
  8997. feature.is_analysis,
  8998. feature.is_obsolete,
  8999. feature.timeaccessioned,
  9000. feature.timelastmodified
  9001. FROM (feature
  9002. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9003. WHERE ((cvterm.name)::text = 'bipartite_duplication'::text);
  9004. --
  9005. -- Name: bipartite_inversion; Type: VIEW; Schema: so; Owner: -
  9006. --
  9007. CREATE VIEW bipartite_inversion AS
  9008. SELECT feature.feature_id AS bipartite_inversion_id,
  9009. feature.feature_id,
  9010. feature.dbxref_id,
  9011. feature.organism_id,
  9012. feature.name,
  9013. feature.uniquename,
  9014. feature.residues,
  9015. feature.seqlen,
  9016. feature.md5checksum,
  9017. feature.type_id,
  9018. feature.is_analysis,
  9019. feature.is_obsolete,
  9020. feature.timeaccessioned,
  9021. feature.timelastmodified
  9022. FROM (feature
  9023. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9024. WHERE ((cvterm.name)::text = 'bipartite_inversion'::text);
  9025. --
  9026. -- Name: blocked_reading_frame; Type: VIEW; Schema: so; Owner: -
  9027. --
  9028. CREATE VIEW blocked_reading_frame AS
  9029. SELECT feature.feature_id AS blocked_reading_frame_id,
  9030. feature.feature_id,
  9031. feature.dbxref_id,
  9032. feature.organism_id,
  9033. feature.name,
  9034. feature.uniquename,
  9035. feature.residues,
  9036. feature.seqlen,
  9037. feature.md5checksum,
  9038. feature.type_id,
  9039. feature.is_analysis,
  9040. feature.is_obsolete,
  9041. feature.timeaccessioned,
  9042. feature.timelastmodified
  9043. FROM (feature
  9044. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9045. WHERE ((cvterm.name)::text = 'blocked_reading_frame'::text);
  9046. --
  9047. -- Name: blunt_end_restriction_enzyme_cleavage_junction; Type: VIEW; Schema: so; Owner: -
  9048. --
  9049. CREATE VIEW blunt_end_restriction_enzyme_cleavage_junction AS
  9050. SELECT feature.feature_id AS blunt_end_restriction_enzyme_cleavage_junction_id,
  9051. feature.feature_id,
  9052. feature.dbxref_id,
  9053. feature.organism_id,
  9054. feature.name,
  9055. feature.uniquename,
  9056. feature.residues,
  9057. feature.seqlen,
  9058. feature.md5checksum,
  9059. feature.type_id,
  9060. feature.is_analysis,
  9061. feature.is_obsolete,
  9062. feature.timeaccessioned,
  9063. feature.timelastmodified
  9064. FROM (feature
  9065. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9066. WHERE ((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_junction'::text);
  9067. --
  9068. -- Name: blunt_end_restriction_enzyme_cleavage_site; Type: VIEW; Schema: so; Owner: -
  9069. --
  9070. CREATE VIEW blunt_end_restriction_enzyme_cleavage_site AS
  9071. SELECT feature.feature_id AS blunt_end_restriction_enzyme_cleavage_site_id,
  9072. feature.feature_id,
  9073. feature.dbxref_id,
  9074. feature.organism_id,
  9075. feature.name,
  9076. feature.uniquename,
  9077. feature.residues,
  9078. feature.seqlen,
  9079. feature.md5checksum,
  9080. feature.type_id,
  9081. feature.is_analysis,
  9082. feature.is_obsolete,
  9083. feature.timeaccessioned,
  9084. feature.timelastmodified
  9085. FROM (feature
  9086. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9087. WHERE ((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_site'::text);
  9088. --
  9089. -- Name: bound_by_factor; Type: VIEW; Schema: so; Owner: -
  9090. --
  9091. CREATE VIEW bound_by_factor AS
  9092. SELECT feature.feature_id AS bound_by_factor_id,
  9093. feature.feature_id,
  9094. feature.dbxref_id,
  9095. feature.organism_id,
  9096. feature.name,
  9097. feature.uniquename,
  9098. feature.residues,
  9099. feature.seqlen,
  9100. feature.md5checksum,
  9101. feature.type_id,
  9102. feature.is_analysis,
  9103. feature.is_obsolete,
  9104. feature.timeaccessioned,
  9105. feature.timelastmodified
  9106. FROM (feature
  9107. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9108. WHERE ((((cvterm.name)::text = 'bound_by_protein'::text) OR ((cvterm.name)::text = 'bound_by_nucleic_acid'::text)) OR ((cvterm.name)::text = 'bound_by_factor'::text));
  9109. --
  9110. -- Name: bound_by_nucleic_acid; Type: VIEW; Schema: so; Owner: -
  9111. --
  9112. CREATE VIEW bound_by_nucleic_acid AS
  9113. SELECT feature.feature_id AS bound_by_nucleic_acid_id,
  9114. feature.feature_id,
  9115. feature.dbxref_id,
  9116. feature.organism_id,
  9117. feature.name,
  9118. feature.uniquename,
  9119. feature.residues,
  9120. feature.seqlen,
  9121. feature.md5checksum,
  9122. feature.type_id,
  9123. feature.is_analysis,
  9124. feature.is_obsolete,
  9125. feature.timeaccessioned,
  9126. feature.timelastmodified
  9127. FROM (feature
  9128. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9129. WHERE ((cvterm.name)::text = 'bound_by_nucleic_acid'::text);
  9130. --
  9131. -- Name: bound_by_protein; Type: VIEW; Schema: so; Owner: -
  9132. --
  9133. CREATE VIEW bound_by_protein AS
  9134. SELECT feature.feature_id AS bound_by_protein_id,
  9135. feature.feature_id,
  9136. feature.dbxref_id,
  9137. feature.organism_id,
  9138. feature.name,
  9139. feature.uniquename,
  9140. feature.residues,
  9141. feature.seqlen,
  9142. feature.md5checksum,
  9143. feature.type_id,
  9144. feature.is_analysis,
  9145. feature.is_obsolete,
  9146. feature.timeaccessioned,
  9147. feature.timelastmodified
  9148. FROM (feature
  9149. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9150. WHERE ((cvterm.name)::text = 'bound_by_protein'::text);
  9151. --
  9152. -- Name: branch_site; Type: VIEW; Schema: so; Owner: -
  9153. --
  9154. CREATE VIEW branch_site AS
  9155. SELECT feature.feature_id AS branch_site_id,
  9156. feature.feature_id,
  9157. feature.dbxref_id,
  9158. feature.organism_id,
  9159. feature.name,
  9160. feature.uniquename,
  9161. feature.residues,
  9162. feature.seqlen,
  9163. feature.md5checksum,
  9164. feature.type_id,
  9165. feature.is_analysis,
  9166. feature.is_obsolete,
  9167. feature.timeaccessioned,
  9168. feature.timelastmodified
  9169. FROM (feature
  9170. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9171. WHERE ((cvterm.name)::text = 'branch_site'::text);
  9172. --
  9173. -- Name: bred_motif; Type: VIEW; Schema: so; Owner: -
  9174. --
  9175. CREATE VIEW bred_motif AS
  9176. SELECT feature.feature_id AS bred_motif_id,
  9177. feature.feature_id,
  9178. feature.dbxref_id,
  9179. feature.organism_id,
  9180. feature.name,
  9181. feature.uniquename,
  9182. feature.residues,
  9183. feature.seqlen,
  9184. feature.md5checksum,
  9185. feature.type_id,
  9186. feature.is_analysis,
  9187. feature.is_obsolete,
  9188. feature.timeaccessioned,
  9189. feature.timelastmodified
  9190. FROM (feature
  9191. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9192. WHERE ((cvterm.name)::text = 'BREd_motif'::text);
  9193. --
  9194. -- Name: breu_motif; Type: VIEW; Schema: so; Owner: -
  9195. --
  9196. CREATE VIEW breu_motif AS
  9197. SELECT feature.feature_id AS breu_motif_id,
  9198. feature.feature_id,
  9199. feature.dbxref_id,
  9200. feature.organism_id,
  9201. feature.name,
  9202. feature.uniquename,
  9203. feature.residues,
  9204. feature.seqlen,
  9205. feature.md5checksum,
  9206. feature.type_id,
  9207. feature.is_analysis,
  9208. feature.is_obsolete,
  9209. feature.timeaccessioned,
  9210. feature.timelastmodified
  9211. FROM (feature
  9212. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9213. WHERE ((cvterm.name)::text = 'BREu_motif'::text);
  9214. --
  9215. -- Name: bruno_response_element; Type: VIEW; Schema: so; Owner: -
  9216. --
  9217. CREATE VIEW bruno_response_element AS
  9218. SELECT feature.feature_id AS bruno_response_element_id,
  9219. feature.feature_id,
  9220. feature.dbxref_id,
  9221. feature.organism_id,
  9222. feature.name,
  9223. feature.uniquename,
  9224. feature.residues,
  9225. feature.seqlen,
  9226. feature.md5checksum,
  9227. feature.type_id,
  9228. feature.is_analysis,
  9229. feature.is_obsolete,
  9230. feature.timeaccessioned,
  9231. feature.timelastmodified
  9232. FROM (feature
  9233. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9234. WHERE ((cvterm.name)::text = 'Bruno_response_element'::text);
  9235. --
  9236. -- Name: c_box; Type: VIEW; Schema: so; Owner: -
  9237. --
  9238. CREATE VIEW c_box AS
  9239. SELECT feature.feature_id AS c_box_id,
  9240. feature.feature_id,
  9241. feature.dbxref_id,
  9242. feature.organism_id,
  9243. feature.name,
  9244. feature.uniquename,
  9245. feature.residues,
  9246. feature.seqlen,
  9247. feature.md5checksum,
  9248. feature.type_id,
  9249. feature.is_analysis,
  9250. feature.is_obsolete,
  9251. feature.timeaccessioned,
  9252. feature.timelastmodified
  9253. FROM (feature
  9254. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9255. WHERE ((cvterm.name)::text = 'C_box'::text);
  9256. --
  9257. -- Name: c_cluster; Type: VIEW; Schema: so; Owner: -
  9258. --
  9259. CREATE VIEW c_cluster AS
  9260. SELECT feature.feature_id AS c_cluster_id,
  9261. feature.feature_id,
  9262. feature.dbxref_id,
  9263. feature.organism_id,
  9264. feature.name,
  9265. feature.uniquename,
  9266. feature.residues,
  9267. feature.seqlen,
  9268. feature.md5checksum,
  9269. feature.type_id,
  9270. feature.is_analysis,
  9271. feature.is_obsolete,
  9272. feature.timeaccessioned,
  9273. feature.timelastmodified
  9274. FROM (feature
  9275. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9276. WHERE ((cvterm.name)::text = 'C_cluster'::text);
  9277. --
  9278. -- Name: c_d_box_snorna; Type: VIEW; Schema: so; Owner: -
  9279. --
  9280. CREATE VIEW c_d_box_snorna AS
  9281. SELECT feature.feature_id AS c_d_box_snorna_id,
  9282. feature.feature_id,
  9283. feature.dbxref_id,
  9284. feature.organism_id,
  9285. feature.name,
  9286. feature.uniquename,
  9287. feature.residues,
  9288. feature.seqlen,
  9289. feature.md5checksum,
  9290. feature.type_id,
  9291. feature.is_analysis,
  9292. feature.is_obsolete,
  9293. feature.timeaccessioned,
  9294. feature.timelastmodified
  9295. FROM (feature
  9296. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9297. WHERE (((((cvterm.name)::text = 'U14_snoRNA'::text) OR ((cvterm.name)::text = 'U3_snoRNA'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA'::text));
  9298. --
  9299. -- Name: c_d_box_snorna_encoding; Type: VIEW; Schema: so; Owner: -
  9300. --
  9301. CREATE VIEW c_d_box_snorna_encoding AS
  9302. SELECT feature.feature_id AS c_d_box_snorna_encoding_id,
  9303. feature.feature_id,
  9304. feature.dbxref_id,
  9305. feature.organism_id,
  9306. feature.name,
  9307. feature.uniquename,
  9308. feature.residues,
  9309. feature.seqlen,
  9310. feature.md5checksum,
  9311. feature.type_id,
  9312. feature.is_analysis,
  9313. feature.is_obsolete,
  9314. feature.timeaccessioned,
  9315. feature.timelastmodified
  9316. FROM (feature
  9317. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9318. WHERE ((cvterm.name)::text = 'C_D_box_snoRNA_encoding'::text);
  9319. --
  9320. -- Name: c_d_box_snorna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  9321. --
  9322. CREATE VIEW c_d_box_snorna_primary_transcript AS
  9323. SELECT feature.feature_id AS c_d_box_snorna_primary_transcript_id,
  9324. feature.feature_id,
  9325. feature.dbxref_id,
  9326. feature.organism_id,
  9327. feature.name,
  9328. feature.uniquename,
  9329. feature.residues,
  9330. feature.seqlen,
  9331. feature.md5checksum,
  9332. feature.type_id,
  9333. feature.is_analysis,
  9334. feature.is_obsolete,
  9335. feature.timeaccessioned,
  9336. feature.timelastmodified
  9337. FROM (feature
  9338. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9339. WHERE ((cvterm.name)::text = 'C_D_box_snoRNA_primary_transcript'::text);
  9340. --
  9341. -- Name: c_gene; Type: VIEW; Schema: so; Owner: -
  9342. --
  9343. CREATE VIEW c_gene AS
  9344. SELECT feature.feature_id AS c_gene_id,
  9345. feature.feature_id,
  9346. feature.dbxref_id,
  9347. feature.organism_id,
  9348. feature.name,
  9349. feature.uniquename,
  9350. feature.residues,
  9351. feature.seqlen,
  9352. feature.md5checksum,
  9353. feature.type_id,
  9354. feature.is_analysis,
  9355. feature.is_obsolete,
  9356. feature.timeaccessioned,
  9357. feature.timelastmodified
  9358. FROM (feature
  9359. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9360. WHERE ((cvterm.name)::text = 'C_gene'::text);
  9361. --
  9362. -- Name: c_terminal_region; Type: VIEW; Schema: so; Owner: -
  9363. --
  9364. CREATE VIEW c_terminal_region AS
  9365. SELECT feature.feature_id AS c_terminal_region_id,
  9366. feature.feature_id,
  9367. feature.dbxref_id,
  9368. feature.organism_id,
  9369. feature.name,
  9370. feature.uniquename,
  9371. feature.residues,
  9372. feature.seqlen,
  9373. feature.md5checksum,
  9374. feature.type_id,
  9375. feature.is_analysis,
  9376. feature.is_obsolete,
  9377. feature.timeaccessioned,
  9378. feature.timelastmodified
  9379. FROM (feature
  9380. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9381. WHERE ((cvterm.name)::text = 'c_terminal_region'::text);
  9382. --
  9383. -- Name: c_to_a_transversion; Type: VIEW; Schema: so; Owner: -
  9384. --
  9385. CREATE VIEW c_to_a_transversion AS
  9386. SELECT feature.feature_id AS c_to_a_transversion_id,
  9387. feature.feature_id,
  9388. feature.dbxref_id,
  9389. feature.organism_id,
  9390. feature.name,
  9391. feature.uniquename,
  9392. feature.residues,
  9393. feature.seqlen,
  9394. feature.md5checksum,
  9395. feature.type_id,
  9396. feature.is_analysis,
  9397. feature.is_obsolete,
  9398. feature.timeaccessioned,
  9399. feature.timelastmodified
  9400. FROM (feature
  9401. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9402. WHERE ((cvterm.name)::text = 'C_to_A_transversion'::text);
  9403. --
  9404. -- Name: c_to_g_transversion; Type: VIEW; Schema: so; Owner: -
  9405. --
  9406. CREATE VIEW c_to_g_transversion AS
  9407. SELECT feature.feature_id AS c_to_g_transversion_id,
  9408. feature.feature_id,
  9409. feature.dbxref_id,
  9410. feature.organism_id,
  9411. feature.name,
  9412. feature.uniquename,
  9413. feature.residues,
  9414. feature.seqlen,
  9415. feature.md5checksum,
  9416. feature.type_id,
  9417. feature.is_analysis,
  9418. feature.is_obsolete,
  9419. feature.timeaccessioned,
  9420. feature.timelastmodified
  9421. FROM (feature
  9422. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9423. WHERE ((cvterm.name)::text = 'C_to_G_transversion'::text);
  9424. --
  9425. -- Name: c_to_t_transition; Type: VIEW; Schema: so; Owner: -
  9426. --
  9427. CREATE VIEW c_to_t_transition AS
  9428. SELECT feature.feature_id AS c_to_t_transition_id,
  9429. feature.feature_id,
  9430. feature.dbxref_id,
  9431. feature.organism_id,
  9432. feature.name,
  9433. feature.uniquename,
  9434. feature.residues,
  9435. feature.seqlen,
  9436. feature.md5checksum,
  9437. feature.type_id,
  9438. feature.is_analysis,
  9439. feature.is_obsolete,
  9440. feature.timeaccessioned,
  9441. feature.timelastmodified
  9442. FROM (feature
  9443. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9444. WHERE (((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text) OR ((cvterm.name)::text = 'C_to_T_transition'::text));
  9445. --
  9446. -- Name: c_to_t_transition_at_pcpg_site; Type: VIEW; Schema: so; Owner: -
  9447. --
  9448. CREATE VIEW c_to_t_transition_at_pcpg_site AS
  9449. SELECT feature.feature_id AS c_to_t_transition_at_pcpg_site_id,
  9450. feature.feature_id,
  9451. feature.dbxref_id,
  9452. feature.organism_id,
  9453. feature.name,
  9454. feature.uniquename,
  9455. feature.residues,
  9456. feature.seqlen,
  9457. feature.md5checksum,
  9458. feature.type_id,
  9459. feature.is_analysis,
  9460. feature.is_obsolete,
  9461. feature.timeaccessioned,
  9462. feature.timelastmodified
  9463. FROM (feature
  9464. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9465. WHERE ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text);
  9466. --
  9467. -- Name: caat_signal; Type: VIEW; Schema: so; Owner: -
  9468. --
  9469. CREATE VIEW caat_signal AS
  9470. SELECT feature.feature_id AS caat_signal_id,
  9471. feature.feature_id,
  9472. feature.dbxref_id,
  9473. feature.organism_id,
  9474. feature.name,
  9475. feature.uniquename,
  9476. feature.residues,
  9477. feature.seqlen,
  9478. feature.md5checksum,
  9479. feature.type_id,
  9480. feature.is_analysis,
  9481. feature.is_obsolete,
  9482. feature.timeaccessioned,
  9483. feature.timelastmodified
  9484. FROM (feature
  9485. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9486. WHERE ((cvterm.name)::text = 'CAAT_signal'::text);
  9487. --
  9488. -- Name: canonical_five_prime_splice_site; Type: VIEW; Schema: so; Owner: -
  9489. --
  9490. CREATE VIEW canonical_five_prime_splice_site AS
  9491. SELECT feature.feature_id AS canonical_five_prime_splice_site_id,
  9492. feature.feature_id,
  9493. feature.dbxref_id,
  9494. feature.organism_id,
  9495. feature.name,
  9496. feature.uniquename,
  9497. feature.residues,
  9498. feature.seqlen,
  9499. feature.md5checksum,
  9500. feature.type_id,
  9501. feature.is_analysis,
  9502. feature.is_obsolete,
  9503. feature.timeaccessioned,
  9504. feature.timelastmodified
  9505. FROM (feature
  9506. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9507. WHERE ((cvterm.name)::text = 'canonical_five_prime_splice_site'::text);
  9508. --
  9509. -- Name: canonical_three_prime_splice_site; Type: VIEW; Schema: so; Owner: -
  9510. --
  9511. CREATE VIEW canonical_three_prime_splice_site AS
  9512. SELECT feature.feature_id AS canonical_three_prime_splice_site_id,
  9513. feature.feature_id,
  9514. feature.dbxref_id,
  9515. feature.organism_id,
  9516. feature.name,
  9517. feature.uniquename,
  9518. feature.residues,
  9519. feature.seqlen,
  9520. feature.md5checksum,
  9521. feature.type_id,
  9522. feature.is_analysis,
  9523. feature.is_obsolete,
  9524. feature.timeaccessioned,
  9525. feature.timelastmodified
  9526. FROM (feature
  9527. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9528. WHERE ((cvterm.name)::text = 'canonical_three_prime_splice_site'::text);
  9529. --
  9530. -- Name: cap; Type: VIEW; Schema: so; Owner: -
  9531. --
  9532. CREATE VIEW cap AS
  9533. SELECT feature.feature_id AS cap_id,
  9534. feature.feature_id,
  9535. feature.dbxref_id,
  9536. feature.organism_id,
  9537. feature.name,
  9538. feature.uniquename,
  9539. feature.residues,
  9540. feature.seqlen,
  9541. feature.md5checksum,
  9542. feature.type_id,
  9543. feature.is_analysis,
  9544. feature.is_obsolete,
  9545. feature.timeaccessioned,
  9546. feature.timelastmodified
  9547. FROM (feature
  9548. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9549. WHERE ((cvterm.name)::text = 'cap'::text);
  9550. --
  9551. -- Name: capped; Type: VIEW; Schema: so; Owner: -
  9552. --
  9553. CREATE VIEW capped AS
  9554. SELECT feature.feature_id AS capped_id,
  9555. feature.feature_id,
  9556. feature.dbxref_id,
  9557. feature.organism_id,
  9558. feature.name,
  9559. feature.uniquename,
  9560. feature.residues,
  9561. feature.seqlen,
  9562. feature.md5checksum,
  9563. feature.type_id,
  9564. feature.is_analysis,
  9565. feature.is_obsolete,
  9566. feature.timeaccessioned,
  9567. feature.timelastmodified
  9568. FROM (feature
  9569. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9570. WHERE ((cvterm.name)::text = 'capped'::text);
  9571. --
  9572. -- Name: capped_mrna; Type: VIEW; Schema: so; Owner: -
  9573. --
  9574. CREATE VIEW capped_mrna AS
  9575. SELECT feature.feature_id AS capped_mrna_id,
  9576. feature.feature_id,
  9577. feature.dbxref_id,
  9578. feature.organism_id,
  9579. feature.name,
  9580. feature.uniquename,
  9581. feature.residues,
  9582. feature.seqlen,
  9583. feature.md5checksum,
  9584. feature.type_id,
  9585. feature.is_analysis,
  9586. feature.is_obsolete,
  9587. feature.timeaccessioned,
  9588. feature.timelastmodified
  9589. FROM (feature
  9590. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9591. WHERE ((cvterm.name)::text = 'capped_mRNA'::text);
  9592. --
  9593. -- Name: capped_primary_transcript; Type: VIEW; Schema: so; Owner: -
  9594. --
  9595. CREATE VIEW capped_primary_transcript AS
  9596. SELECT feature.feature_id AS capped_primary_transcript_id,
  9597. feature.feature_id,
  9598. feature.dbxref_id,
  9599. feature.organism_id,
  9600. feature.name,
  9601. feature.uniquename,
  9602. feature.residues,
  9603. feature.seqlen,
  9604. feature.md5checksum,
  9605. feature.type_id,
  9606. feature.is_analysis,
  9607. feature.is_obsolete,
  9608. feature.timeaccessioned,
  9609. feature.timelastmodified
  9610. FROM (feature
  9611. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9612. WHERE ((cvterm.name)::text = 'capped_primary_transcript'::text);
  9613. --
  9614. -- Name: cassette_array_member; Type: VIEW; Schema: so; Owner: -
  9615. --
  9616. CREATE VIEW cassette_array_member AS
  9617. SELECT feature.feature_id AS cassette_array_member_id,
  9618. feature.feature_id,
  9619. feature.dbxref_id,
  9620. feature.organism_id,
  9621. feature.name,
  9622. feature.uniquename,
  9623. feature.residues,
  9624. feature.seqlen,
  9625. feature.md5checksum,
  9626. feature.type_id,
  9627. feature.is_analysis,
  9628. feature.is_obsolete,
  9629. feature.timeaccessioned,
  9630. feature.timelastmodified
  9631. FROM (feature
  9632. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9633. WHERE ((cvterm.name)::text = 'cassette_array_member'::text);
  9634. --
  9635. -- Name: cassette_pseudogene; Type: VIEW; Schema: so; Owner: -
  9636. --
  9637. CREATE VIEW cassette_pseudogene AS
  9638. SELECT feature.feature_id AS cassette_pseudogene_id,
  9639. feature.feature_id,
  9640. feature.dbxref_id,
  9641. feature.organism_id,
  9642. feature.name,
  9643. feature.uniquename,
  9644. feature.residues,
  9645. feature.seqlen,
  9646. feature.md5checksum,
  9647. feature.type_id,
  9648. feature.is_analysis,
  9649. feature.is_obsolete,
  9650. feature.timeaccessioned,
  9651. feature.timelastmodified
  9652. FROM (feature
  9653. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9654. WHERE ((cvterm.name)::text = 'cassette_pseudogene'::text);
  9655. --
  9656. -- Name: catalytic_residue; Type: VIEW; Schema: so; Owner: -
  9657. --
  9658. CREATE VIEW catalytic_residue AS
  9659. SELECT feature.feature_id AS catalytic_residue_id,
  9660. feature.feature_id,
  9661. feature.dbxref_id,
  9662. feature.organism_id,
  9663. feature.name,
  9664. feature.uniquename,
  9665. feature.residues,
  9666. feature.seqlen,
  9667. feature.md5checksum,
  9668. feature.type_id,
  9669. feature.is_analysis,
  9670. feature.is_obsolete,
  9671. feature.timeaccessioned,
  9672. feature.timelastmodified
  9673. FROM (feature
  9674. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9675. WHERE ((cvterm.name)::text = 'catalytic_residue'::text);
  9676. --
  9677. -- Name: catmat_left_handed_four; Type: VIEW; Schema: so; Owner: -
  9678. --
  9679. CREATE VIEW catmat_left_handed_four AS
  9680. SELECT feature.feature_id AS catmat_left_handed_four_id,
  9681. feature.feature_id,
  9682. feature.dbxref_id,
  9683. feature.organism_id,
  9684. feature.name,
  9685. feature.uniquename,
  9686. feature.residues,
  9687. feature.seqlen,
  9688. feature.md5checksum,
  9689. feature.type_id,
  9690. feature.is_analysis,
  9691. feature.is_obsolete,
  9692. feature.timeaccessioned,
  9693. feature.timelastmodified
  9694. FROM (feature
  9695. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9696. WHERE ((cvterm.name)::text = 'catmat_left_handed_four'::text);
  9697. --
  9698. -- Name: catmat_left_handed_three; Type: VIEW; Schema: so; Owner: -
  9699. --
  9700. CREATE VIEW catmat_left_handed_three AS
  9701. SELECT feature.feature_id AS catmat_left_handed_three_id,
  9702. feature.feature_id,
  9703. feature.dbxref_id,
  9704. feature.organism_id,
  9705. feature.name,
  9706. feature.uniquename,
  9707. feature.residues,
  9708. feature.seqlen,
  9709. feature.md5checksum,
  9710. feature.type_id,
  9711. feature.is_analysis,
  9712. feature.is_obsolete,
  9713. feature.timeaccessioned,
  9714. feature.timelastmodified
  9715. FROM (feature
  9716. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9717. WHERE ((cvterm.name)::text = 'catmat_left_handed_three'::text);
  9718. --
  9719. -- Name: catmat_right_handed_four; Type: VIEW; Schema: so; Owner: -
  9720. --
  9721. CREATE VIEW catmat_right_handed_four AS
  9722. SELECT feature.feature_id AS catmat_right_handed_four_id,
  9723. feature.feature_id,
  9724. feature.dbxref_id,
  9725. feature.organism_id,
  9726. feature.name,
  9727. feature.uniquename,
  9728. feature.residues,
  9729. feature.seqlen,
  9730. feature.md5checksum,
  9731. feature.type_id,
  9732. feature.is_analysis,
  9733. feature.is_obsolete,
  9734. feature.timeaccessioned,
  9735. feature.timelastmodified
  9736. FROM (feature
  9737. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9738. WHERE ((cvterm.name)::text = 'catmat_right_handed_four'::text);
  9739. --
  9740. -- Name: catmat_right_handed_three; Type: VIEW; Schema: so; Owner: -
  9741. --
  9742. CREATE VIEW catmat_right_handed_three AS
  9743. SELECT feature.feature_id AS catmat_right_handed_three_id,
  9744. feature.feature_id,
  9745. feature.dbxref_id,
  9746. feature.organism_id,
  9747. feature.name,
  9748. feature.uniquename,
  9749. feature.residues,
  9750. feature.seqlen,
  9751. feature.md5checksum,
  9752. feature.type_id,
  9753. feature.is_analysis,
  9754. feature.is_obsolete,
  9755. feature.timeaccessioned,
  9756. feature.timelastmodified
  9757. FROM (feature
  9758. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9759. WHERE ((cvterm.name)::text = 'catmat_right_handed_three'::text);
  9760. --
  9761. -- Name: cca_tail; Type: VIEW; Schema: so; Owner: -
  9762. --
  9763. CREATE VIEW cca_tail AS
  9764. SELECT feature.feature_id AS cca_tail_id,
  9765. feature.feature_id,
  9766. feature.dbxref_id,
  9767. feature.organism_id,
  9768. feature.name,
  9769. feature.uniquename,
  9770. feature.residues,
  9771. feature.seqlen,
  9772. feature.md5checksum,
  9773. feature.type_id,
  9774. feature.is_analysis,
  9775. feature.is_obsolete,
  9776. feature.timeaccessioned,
  9777. feature.timelastmodified
  9778. FROM (feature
  9779. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9780. WHERE ((cvterm.name)::text = 'CCA_tail'::text);
  9781. --
  9782. -- Name: cdna; Type: VIEW; Schema: so; Owner: -
  9783. --
  9784. CREATE VIEW cdna AS
  9785. SELECT feature.feature_id AS cdna_id,
  9786. feature.feature_id,
  9787. feature.dbxref_id,
  9788. feature.organism_id,
  9789. feature.name,
  9790. feature.uniquename,
  9791. feature.residues,
  9792. feature.seqlen,
  9793. feature.md5checksum,
  9794. feature.type_id,
  9795. feature.is_analysis,
  9796. feature.is_obsolete,
  9797. feature.timeaccessioned,
  9798. feature.timelastmodified
  9799. FROM (feature
  9800. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9801. WHERE ((((cvterm.name)::text = 'single_stranded_cDNA'::text) OR ((cvterm.name)::text = 'double_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'cDNA'::text));
  9802. --
  9803. -- Name: cdna_clone; Type: VIEW; Schema: so; Owner: -
  9804. --
  9805. CREATE VIEW cdna_clone AS
  9806. SELECT feature.feature_id AS cdna_clone_id,
  9807. feature.feature_id,
  9808. feature.dbxref_id,
  9809. feature.organism_id,
  9810. feature.name,
  9811. feature.uniquename,
  9812. feature.residues,
  9813. feature.seqlen,
  9814. feature.md5checksum,
  9815. feature.type_id,
  9816. feature.is_analysis,
  9817. feature.is_obsolete,
  9818. feature.timeaccessioned,
  9819. feature.timelastmodified
  9820. FROM (feature
  9821. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9822. WHERE (((((((((cvterm.name)::text = 'validated_cDNA_clone'::text) OR ((cvterm.name)::text = 'invalidated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'three_prime_RACE_clone'::text)) OR ((cvterm.name)::text = 'chimeric_cDNA_clone'::text)) OR ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'cDNA_clone'::text));
  9823. --
  9824. -- Name: cdna_match; Type: VIEW; Schema: so; Owner: -
  9825. --
  9826. CREATE VIEW cdna_match AS
  9827. SELECT feature.feature_id AS cdna_match_id,
  9828. feature.feature_id,
  9829. feature.dbxref_id,
  9830. feature.organism_id,
  9831. feature.name,
  9832. feature.uniquename,
  9833. feature.residues,
  9834. feature.seqlen,
  9835. feature.md5checksum,
  9836. feature.type_id,
  9837. feature.is_analysis,
  9838. feature.is_obsolete,
  9839. feature.timeaccessioned,
  9840. feature.timelastmodified
  9841. FROM (feature
  9842. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9843. WHERE ((cvterm.name)::text = 'cDNA_match'::text);
  9844. --
  9845. -- Name: cds; Type: VIEW; Schema: so; Owner: -
  9846. --
  9847. CREATE VIEW cds AS
  9848. SELECT feature.feature_id AS cds_id,
  9849. feature.feature_id,
  9850. feature.dbxref_id,
  9851. feature.organism_id,
  9852. feature.name,
  9853. feature.uniquename,
  9854. feature.residues,
  9855. feature.seqlen,
  9856. feature.md5checksum,
  9857. feature.type_id,
  9858. feature.is_analysis,
  9859. feature.is_obsolete,
  9860. feature.timeaccessioned,
  9861. feature.timelastmodified
  9862. FROM (feature
  9863. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9864. WHERE ((((((((((cvterm.name)::text = 'edited_CDS'::text) OR ((cvterm.name)::text = 'CDS_fragment'::text)) OR ((cvterm.name)::text = 'CDS_independently_known'::text)) OR ((cvterm.name)::text = 'CDS_predicted'::text)) OR ((cvterm.name)::text = 'orphan_CDS'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_sequence_similarity_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_domain_match_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_EST_or_cDNA_data'::text)) OR ((cvterm.name)::text = 'CDS'::text));
  9865. --
  9866. -- Name: cds_fragment; Type: VIEW; Schema: so; Owner: -
  9867. --
  9868. CREATE VIEW cds_fragment AS
  9869. SELECT feature.feature_id AS cds_fragment_id,
  9870. feature.feature_id,
  9871. feature.dbxref_id,
  9872. feature.organism_id,
  9873. feature.name,
  9874. feature.uniquename,
  9875. feature.residues,
  9876. feature.seqlen,
  9877. feature.md5checksum,
  9878. feature.type_id,
  9879. feature.is_analysis,
  9880. feature.is_obsolete,
  9881. feature.timeaccessioned,
  9882. feature.timelastmodified
  9883. FROM (feature
  9884. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9885. WHERE ((cvterm.name)::text = 'CDS_fragment'::text);
  9886. --
  9887. -- Name: cds_independently_known; Type: VIEW; Schema: so; Owner: -
  9888. --
  9889. CREATE VIEW cds_independently_known AS
  9890. SELECT feature.feature_id AS cds_independently_known_id,
  9891. feature.feature_id,
  9892. feature.dbxref_id,
  9893. feature.organism_id,
  9894. feature.name,
  9895. feature.uniquename,
  9896. feature.residues,
  9897. feature.seqlen,
  9898. feature.md5checksum,
  9899. feature.type_id,
  9900. feature.is_analysis,
  9901. feature.is_obsolete,
  9902. feature.timeaccessioned,
  9903. feature.timelastmodified
  9904. FROM (feature
  9905. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9906. WHERE ((cvterm.name)::text = 'CDS_independently_known'::text);
  9907. --
  9908. -- Name: cds_predicted; Type: VIEW; Schema: so; Owner: -
  9909. --
  9910. CREATE VIEW cds_predicted AS
  9911. SELECT feature.feature_id AS cds_predicted_id,
  9912. feature.feature_id,
  9913. feature.dbxref_id,
  9914. feature.organism_id,
  9915. feature.name,
  9916. feature.uniquename,
  9917. feature.residues,
  9918. feature.seqlen,
  9919. feature.md5checksum,
  9920. feature.type_id,
  9921. feature.is_analysis,
  9922. feature.is_obsolete,
  9923. feature.timeaccessioned,
  9924. feature.timelastmodified
  9925. FROM (feature
  9926. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9927. WHERE ((((((cvterm.name)::text = 'orphan_CDS'::text) OR ((cvterm.name)::text = 'CDS_supported_by_sequence_similarity_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_domain_match_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_EST_or_cDNA_data'::text)) OR ((cvterm.name)::text = 'CDS_predicted'::text));
  9928. --
  9929. -- Name: cds_region; Type: VIEW; Schema: so; Owner: -
  9930. --
  9931. CREATE VIEW cds_region AS
  9932. SELECT feature.feature_id AS cds_region_id,
  9933. feature.feature_id,
  9934. feature.dbxref_id,
  9935. feature.organism_id,
  9936. feature.name,
  9937. feature.uniquename,
  9938. feature.residues,
  9939. feature.seqlen,
  9940. feature.md5checksum,
  9941. feature.type_id,
  9942. feature.is_analysis,
  9943. feature.is_obsolete,
  9944. feature.timeaccessioned,
  9945. feature.timelastmodified
  9946. FROM (feature
  9947. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9948. WHERE ((((((((((((((cvterm.name)::text = 'coding_start'::text) OR ((cvterm.name)::text = 'coding_end'::text)) OR ((cvterm.name)::text = 'codon'::text)) OR ((cvterm.name)::text = 'recoded_codon'::text)) OR ((cvterm.name)::text = 'start_codon'::text)) OR ((cvterm.name)::text = 'stop_codon'::text)) OR ((cvterm.name)::text = 'stop_codon_read_through'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'non_canonical_start_codon'::text)) OR ((cvterm.name)::text = 'four_bp_start_codon'::text)) OR ((cvterm.name)::text = 'CTG_start_codon'::text)) OR ((cvterm.name)::text = 'CDS_region'::text));
  9949. --
  9950. -- Name: cds_supported_by_domain_match_data; Type: VIEW; Schema: so; Owner: -
  9951. --
  9952. CREATE VIEW cds_supported_by_domain_match_data AS
  9953. SELECT feature.feature_id AS cds_supported_by_domain_match_data_id,
  9954. feature.feature_id,
  9955. feature.dbxref_id,
  9956. feature.organism_id,
  9957. feature.name,
  9958. feature.uniquename,
  9959. feature.residues,
  9960. feature.seqlen,
  9961. feature.md5checksum,
  9962. feature.type_id,
  9963. feature.is_analysis,
  9964. feature.is_obsolete,
  9965. feature.timeaccessioned,
  9966. feature.timelastmodified
  9967. FROM (feature
  9968. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9969. WHERE ((cvterm.name)::text = 'CDS_supported_by_domain_match_data'::text);
  9970. --
  9971. -- Name: cds_supported_by_est_or_cdna_data; Type: VIEW; Schema: so; Owner: -
  9972. --
  9973. CREATE VIEW cds_supported_by_est_or_cdna_data AS
  9974. SELECT feature.feature_id AS cds_supported_by_est_or_cdna_data_id,
  9975. feature.feature_id,
  9976. feature.dbxref_id,
  9977. feature.organism_id,
  9978. feature.name,
  9979. feature.uniquename,
  9980. feature.residues,
  9981. feature.seqlen,
  9982. feature.md5checksum,
  9983. feature.type_id,
  9984. feature.is_analysis,
  9985. feature.is_obsolete,
  9986. feature.timeaccessioned,
  9987. feature.timelastmodified
  9988. FROM (feature
  9989. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  9990. WHERE ((cvterm.name)::text = 'CDS_supported_by_EST_or_cDNA_data'::text);
  9991. --
  9992. -- Name: cds_supported_by_sequence_similarity_data; Type: VIEW; Schema: so; Owner: -
  9993. --
  9994. CREATE VIEW cds_supported_by_sequence_similarity_data AS
  9995. SELECT feature.feature_id AS cds_supported_by_sequence_similarity_data_id,
  9996. feature.feature_id,
  9997. feature.dbxref_id,
  9998. feature.organism_id,
  9999. feature.name,
  10000. feature.uniquename,
  10001. feature.residues,
  10002. feature.seqlen,
  10003. feature.md5checksum,
  10004. feature.type_id,
  10005. feature.is_analysis,
  10006. feature.is_obsolete,
  10007. feature.timeaccessioned,
  10008. feature.timelastmodified
  10009. FROM (feature
  10010. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10011. WHERE ((((cvterm.name)::text = 'CDS_supported_by_domain_match_data'::text) OR ((cvterm.name)::text = 'CDS_supported_by_EST_or_cDNA_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_sequence_similarity_data'::text));
  10012. --
  10013. -- Name: central_hydrophobic_region_of_signal_peptide; Type: VIEW; Schema: so; Owner: -
  10014. --
  10015. CREATE VIEW central_hydrophobic_region_of_signal_peptide AS
  10016. SELECT feature.feature_id AS central_hydrophobic_region_of_signal_peptide_id,
  10017. feature.feature_id,
  10018. feature.dbxref_id,
  10019. feature.organism_id,
  10020. feature.name,
  10021. feature.uniquename,
  10022. feature.residues,
  10023. feature.seqlen,
  10024. feature.md5checksum,
  10025. feature.type_id,
  10026. feature.is_analysis,
  10027. feature.is_obsolete,
  10028. feature.timeaccessioned,
  10029. feature.timelastmodified
  10030. FROM (feature
  10031. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10032. WHERE ((cvterm.name)::text = 'central_hydrophobic_region_of_signal_peptide'::text);
  10033. --
  10034. -- Name: centromere; Type: VIEW; Schema: so; Owner: -
  10035. --
  10036. CREATE VIEW centromere AS
  10037. SELECT feature.feature_id AS centromere_id,
  10038. feature.feature_id,
  10039. feature.dbxref_id,
  10040. feature.organism_id,
  10041. feature.name,
  10042. feature.uniquename,
  10043. feature.residues,
  10044. feature.seqlen,
  10045. feature.md5checksum,
  10046. feature.type_id,
  10047. feature.is_analysis,
  10048. feature.is_obsolete,
  10049. feature.timeaccessioned,
  10050. feature.timelastmodified
  10051. FROM (feature
  10052. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10053. WHERE ((((cvterm.name)::text = 'point_centromere'::text) OR ((cvterm.name)::text = 'regional_centromere'::text)) OR ((cvterm.name)::text = 'centromere'::text));
  10054. --
  10055. -- Name: centromere_dna_element_i; Type: VIEW; Schema: so; Owner: -
  10056. --
  10057. CREATE VIEW centromere_dna_element_i AS
  10058. SELECT feature.feature_id AS centromere_dna_element_i_id,
  10059. feature.feature_id,
  10060. feature.dbxref_id,
  10061. feature.organism_id,
  10062. feature.name,
  10063. feature.uniquename,
  10064. feature.residues,
  10065. feature.seqlen,
  10066. feature.md5checksum,
  10067. feature.type_id,
  10068. feature.is_analysis,
  10069. feature.is_obsolete,
  10070. feature.timeaccessioned,
  10071. feature.timelastmodified
  10072. FROM (feature
  10073. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10074. WHERE ((cvterm.name)::text = 'centromere_DNA_Element_I'::text);
  10075. --
  10076. -- Name: centromere_dna_element_ii; Type: VIEW; Schema: so; Owner: -
  10077. --
  10078. CREATE VIEW centromere_dna_element_ii AS
  10079. SELECT feature.feature_id AS centromere_dna_element_ii_id,
  10080. feature.feature_id,
  10081. feature.dbxref_id,
  10082. feature.organism_id,
  10083. feature.name,
  10084. feature.uniquename,
  10085. feature.residues,
  10086. feature.seqlen,
  10087. feature.md5checksum,
  10088. feature.type_id,
  10089. feature.is_analysis,
  10090. feature.is_obsolete,
  10091. feature.timeaccessioned,
  10092. feature.timelastmodified
  10093. FROM (feature
  10094. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10095. WHERE ((cvterm.name)::text = 'centromere_DNA_Element_II'::text);
  10096. --
  10097. -- Name: centromere_dna_element_iii; Type: VIEW; Schema: so; Owner: -
  10098. --
  10099. CREATE VIEW centromere_dna_element_iii AS
  10100. SELECT feature.feature_id AS centromere_dna_element_iii_id,
  10101. feature.feature_id,
  10102. feature.dbxref_id,
  10103. feature.organism_id,
  10104. feature.name,
  10105. feature.uniquename,
  10106. feature.residues,
  10107. feature.seqlen,
  10108. feature.md5checksum,
  10109. feature.type_id,
  10110. feature.is_analysis,
  10111. feature.is_obsolete,
  10112. feature.timeaccessioned,
  10113. feature.timelastmodified
  10114. FROM (feature
  10115. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10116. WHERE ((cvterm.name)::text = 'centromere_DNA_Element_III'::text);
  10117. --
  10118. -- Name: centromeric_repeat; Type: VIEW; Schema: so; Owner: -
  10119. --
  10120. CREATE VIEW centromeric_repeat AS
  10121. SELECT feature.feature_id AS centromeric_repeat_id,
  10122. feature.feature_id,
  10123. feature.dbxref_id,
  10124. feature.organism_id,
  10125. feature.name,
  10126. feature.uniquename,
  10127. feature.residues,
  10128. feature.seqlen,
  10129. feature.md5checksum,
  10130. feature.type_id,
  10131. feature.is_analysis,
  10132. feature.is_obsolete,
  10133. feature.timeaccessioned,
  10134. feature.timelastmodified
  10135. FROM (feature
  10136. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10137. WHERE ((((cvterm.name)::text = 'regional_centromere_inner_repeat_region'::text) OR ((cvterm.name)::text = 'regional_centromere_outer_repeat_region'::text)) OR ((cvterm.name)::text = 'centromeric_repeat'::text));
  10138. --
  10139. -- Name: chimeric_cdna_clone; Type: VIEW; Schema: so; Owner: -
  10140. --
  10141. CREATE VIEW chimeric_cdna_clone AS
  10142. SELECT feature.feature_id AS chimeric_cdna_clone_id,
  10143. feature.feature_id,
  10144. feature.dbxref_id,
  10145. feature.organism_id,
  10146. feature.name,
  10147. feature.uniquename,
  10148. feature.residues,
  10149. feature.seqlen,
  10150. feature.md5checksum,
  10151. feature.type_id,
  10152. feature.is_analysis,
  10153. feature.is_obsolete,
  10154. feature.timeaccessioned,
  10155. feature.timelastmodified
  10156. FROM (feature
  10157. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10158. WHERE ((cvterm.name)::text = 'chimeric_cDNA_clone'::text);
  10159. --
  10160. -- Name: chip_seq_region; Type: VIEW; Schema: so; Owner: -
  10161. --
  10162. CREATE VIEW chip_seq_region AS
  10163. SELECT feature.feature_id AS chip_seq_region_id,
  10164. feature.feature_id,
  10165. feature.dbxref_id,
  10166. feature.organism_id,
  10167. feature.name,
  10168. feature.uniquename,
  10169. feature.residues,
  10170. feature.seqlen,
  10171. feature.md5checksum,
  10172. feature.type_id,
  10173. feature.is_analysis,
  10174. feature.is_obsolete,
  10175. feature.timeaccessioned,
  10176. feature.timelastmodified
  10177. FROM (feature
  10178. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10179. WHERE ((cvterm.name)::text = 'CHiP_seq_region'::text);
  10180. --
  10181. -- Name: chloroplast_chromosome; Type: VIEW; Schema: so; Owner: -
  10182. --
  10183. CREATE VIEW chloroplast_chromosome AS
  10184. SELECT feature.feature_id AS chloroplast_chromosome_id,
  10185. feature.feature_id,
  10186. feature.dbxref_id,
  10187. feature.organism_id,
  10188. feature.name,
  10189. feature.uniquename,
  10190. feature.residues,
  10191. feature.seqlen,
  10192. feature.md5checksum,
  10193. feature.type_id,
  10194. feature.is_analysis,
  10195. feature.is_obsolete,
  10196. feature.timeaccessioned,
  10197. feature.timelastmodified
  10198. FROM (feature
  10199. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10200. WHERE ((cvterm.name)::text = 'chloroplast_chromosome'::text);
  10201. --
  10202. -- Name: chloroplast_dna; Type: VIEW; Schema: so; Owner: -
  10203. --
  10204. CREATE VIEW chloroplast_dna AS
  10205. SELECT feature.feature_id AS chloroplast_dna_id,
  10206. feature.feature_id,
  10207. feature.dbxref_id,
  10208. feature.organism_id,
  10209. feature.name,
  10210. feature.uniquename,
  10211. feature.residues,
  10212. feature.seqlen,
  10213. feature.md5checksum,
  10214. feature.type_id,
  10215. feature.is_analysis,
  10216. feature.is_obsolete,
  10217. feature.timeaccessioned,
  10218. feature.timelastmodified
  10219. FROM (feature
  10220. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10221. WHERE ((cvterm.name)::text = 'chloroplast_DNA'::text);
  10222. --
  10223. -- Name: chloroplast_sequence; Type: VIEW; Schema: so; Owner: -
  10224. --
  10225. CREATE VIEW chloroplast_sequence AS
  10226. SELECT feature.feature_id AS chloroplast_sequence_id,
  10227. feature.feature_id,
  10228. feature.dbxref_id,
  10229. feature.organism_id,
  10230. feature.name,
  10231. feature.uniquename,
  10232. feature.residues,
  10233. feature.seqlen,
  10234. feature.md5checksum,
  10235. feature.type_id,
  10236. feature.is_analysis,
  10237. feature.is_obsolete,
  10238. feature.timeaccessioned,
  10239. feature.timelastmodified
  10240. FROM (feature
  10241. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10242. WHERE (((cvterm.name)::text = 'chloroplast_DNA'::text) OR ((cvterm.name)::text = 'chloroplast_sequence'::text));
  10243. --
  10244. -- Name: chromoplast_chromosome; Type: VIEW; Schema: so; Owner: -
  10245. --
  10246. CREATE VIEW chromoplast_chromosome AS
  10247. SELECT feature.feature_id AS chromoplast_chromosome_id,
  10248. feature.feature_id,
  10249. feature.dbxref_id,
  10250. feature.organism_id,
  10251. feature.name,
  10252. feature.uniquename,
  10253. feature.residues,
  10254. feature.seqlen,
  10255. feature.md5checksum,
  10256. feature.type_id,
  10257. feature.is_analysis,
  10258. feature.is_obsolete,
  10259. feature.timeaccessioned,
  10260. feature.timelastmodified
  10261. FROM (feature
  10262. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10263. WHERE ((cvterm.name)::text = 'chromoplast_chromosome'::text);
  10264. --
  10265. -- Name: chromoplast_gene; Type: VIEW; Schema: so; Owner: -
  10266. --
  10267. CREATE VIEW chromoplast_gene AS
  10268. SELECT feature.feature_id AS chromoplast_gene_id,
  10269. feature.feature_id,
  10270. feature.dbxref_id,
  10271. feature.organism_id,
  10272. feature.name,
  10273. feature.uniquename,
  10274. feature.residues,
  10275. feature.seqlen,
  10276. feature.md5checksum,
  10277. feature.type_id,
  10278. feature.is_analysis,
  10279. feature.is_obsolete,
  10280. feature.timeaccessioned,
  10281. feature.timelastmodified
  10282. FROM (feature
  10283. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10284. WHERE ((cvterm.name)::text = 'chromoplast_gene'::text);
  10285. --
  10286. -- Name: chromoplast_sequence; Type: VIEW; Schema: so; Owner: -
  10287. --
  10288. CREATE VIEW chromoplast_sequence AS
  10289. SELECT feature.feature_id AS chromoplast_sequence_id,
  10290. feature.feature_id,
  10291. feature.dbxref_id,
  10292. feature.organism_id,
  10293. feature.name,
  10294. feature.uniquename,
  10295. feature.residues,
  10296. feature.seqlen,
  10297. feature.md5checksum,
  10298. feature.type_id,
  10299. feature.is_analysis,
  10300. feature.is_obsolete,
  10301. feature.timeaccessioned,
  10302. feature.timelastmodified
  10303. FROM (feature
  10304. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10305. WHERE ((cvterm.name)::text = 'chromoplast_sequence'::text);
  10306. --
  10307. -- Name: chromosomal_deletion; Type: VIEW; Schema: so; Owner: -
  10308. --
  10309. CREATE VIEW chromosomal_deletion AS
  10310. SELECT feature.feature_id AS chromosomal_deletion_id,
  10311. feature.feature_id,
  10312. feature.dbxref_id,
  10313. feature.organism_id,
  10314. feature.name,
  10315. feature.uniquename,
  10316. feature.residues,
  10317. feature.seqlen,
  10318. feature.md5checksum,
  10319. feature.type_id,
  10320. feature.is_analysis,
  10321. feature.is_obsolete,
  10322. feature.timeaccessioned,
  10323. feature.timelastmodified
  10324. FROM (feature
  10325. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10326. WHERE ((((((((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text) OR ((cvterm.name)::text = 'inversion_derived_bipartite_deficiency'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'chromosomal_deletion'::text));
  10327. --
  10328. -- Name: chromosomal_duplication; Type: VIEW; Schema: so; Owner: -
  10329. --
  10330. CREATE VIEW chromosomal_duplication AS
  10331. SELECT feature.feature_id AS chromosomal_duplication_id,
  10332. feature.feature_id,
  10333. feature.dbxref_id,
  10334. feature.organism_id,
  10335. feature.name,
  10336. feature.uniquename,
  10337. feature.residues,
  10338. feature.seqlen,
  10339. feature.md5checksum,
  10340. feature.type_id,
  10341. feature.is_analysis,
  10342. feature.is_obsolete,
  10343. feature.timeaccessioned,
  10344. feature.timelastmodified
  10345. FROM (feature
  10346. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10347. WHERE (((((((((((((((((((cvterm.name)::text = 'interchromosomal_duplication'::text) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'free_duplication'::text)) OR ((cvterm.name)::text = 'insertional_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'uninverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'inverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'unoriented_insertional_duplication'::text)) OR ((cvterm.name)::text = 'chromosomal_duplication'::text));
  10348. --
  10349. -- Name: chromosomal_inversion; Type: VIEW; Schema: so; Owner: -
  10350. --
  10351. CREATE VIEW chromosomal_inversion AS
  10352. SELECT feature.feature_id AS chromosomal_inversion_id,
  10353. feature.feature_id,
  10354. feature.dbxref_id,
  10355. feature.organism_id,
  10356. feature.name,
  10357. feature.uniquename,
  10358. feature.residues,
  10359. feature.seqlen,
  10360. feature.md5checksum,
  10361. feature.type_id,
  10362. feature.is_analysis,
  10363. feature.is_obsolete,
  10364. feature.timeaccessioned,
  10365. feature.timelastmodified
  10366. FROM (feature
  10367. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10368. WHERE ((((((((((cvterm.name)::text = 'inverted_ring_chromosome'::text) OR ((cvterm.name)::text = 'pericentric_inversion'::text)) OR ((cvterm.name)::text = 'paracentric_inversion'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'chromosomal_inversion'::text));
  10369. --
  10370. -- Name: chromosomal_regulatory_element; Type: VIEW; Schema: so; Owner: -
  10371. --
  10372. CREATE VIEW chromosomal_regulatory_element AS
  10373. SELECT feature.feature_id AS chromosomal_regulatory_element_id,
  10374. feature.feature_id,
  10375. feature.dbxref_id,
  10376. feature.organism_id,
  10377. feature.name,
  10378. feature.uniquename,
  10379. feature.residues,
  10380. feature.seqlen,
  10381. feature.md5checksum,
  10382. feature.type_id,
  10383. feature.is_analysis,
  10384. feature.is_obsolete,
  10385. feature.timeaccessioned,
  10386. feature.timelastmodified
  10387. FROM (feature
  10388. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10389. WHERE (((cvterm.name)::text = 'matrix_attachment_site'::text) OR ((cvterm.name)::text = 'chromosomal_regulatory_element'::text));
  10390. --
  10391. -- Name: chromosomal_structural_element; Type: VIEW; Schema: so; Owner: -
  10392. --
  10393. CREATE VIEW chromosomal_structural_element AS
  10394. SELECT feature.feature_id AS chromosomal_structural_element_id,
  10395. feature.feature_id,
  10396. feature.dbxref_id,
  10397. feature.organism_id,
  10398. feature.name,
  10399. feature.uniquename,
  10400. feature.residues,
  10401. feature.seqlen,
  10402. feature.md5checksum,
  10403. feature.type_id,
  10404. feature.is_analysis,
  10405. feature.is_obsolete,
  10406. feature.timeaccessioned,
  10407. feature.timelastmodified
  10408. FROM (feature
  10409. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10410. WHERE ((((((cvterm.name)::text = 'centromere'::text) OR ((cvterm.name)::text = 'telomere'::text)) OR ((cvterm.name)::text = 'point_centromere'::text)) OR ((cvterm.name)::text = 'regional_centromere'::text)) OR ((cvterm.name)::text = 'chromosomal_structural_element'::text));
  10411. --
  10412. -- Name: chromosomal_translocation; Type: VIEW; Schema: so; Owner: -
  10413. --
  10414. CREATE VIEW chromosomal_translocation AS
  10415. SELECT feature.feature_id AS chromosomal_translocation_id,
  10416. feature.feature_id,
  10417. feature.dbxref_id,
  10418. feature.organism_id,
  10419. feature.name,
  10420. feature.uniquename,
  10421. feature.residues,
  10422. feature.seqlen,
  10423. feature.md5checksum,
  10424. feature.type_id,
  10425. feature.is_analysis,
  10426. feature.is_obsolete,
  10427. feature.timeaccessioned,
  10428. feature.timelastmodified
  10429. FROM (feature
  10430. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10431. WHERE (((((((((cvterm.name)::text = 'translocation_element'::text) OR ((cvterm.name)::text = 'Robertsonian_fusion'::text)) OR ((cvterm.name)::text = 'reciprocal_chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'cyclic_translocation'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'chromosomal_translocation'::text));
  10432. --
  10433. -- Name: chromosomal_transposition; Type: VIEW; Schema: so; Owner: -
  10434. --
  10435. CREATE VIEW chromosomal_transposition AS
  10436. SELECT feature.feature_id AS chromosomal_transposition_id,
  10437. feature.feature_id,
  10438. feature.dbxref_id,
  10439. feature.organism_id,
  10440. feature.name,
  10441. feature.uniquename,
  10442. feature.residues,
  10443. feature.seqlen,
  10444. feature.md5checksum,
  10445. feature.type_id,
  10446. feature.is_analysis,
  10447. feature.is_obsolete,
  10448. feature.timeaccessioned,
  10449. feature.timelastmodified
  10450. FROM (feature
  10451. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10452. WHERE ((((((((((((cvterm.name)::text = 'intrachromosomal_transposition'::text) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'chromosomal_transposition'::text));
  10453. --
  10454. -- Name: chromosomal_variation_attribute; Type: VIEW; Schema: so; Owner: -
  10455. --
  10456. CREATE VIEW chromosomal_variation_attribute AS
  10457. SELECT feature.feature_id AS chromosomal_variation_attribute_id,
  10458. feature.feature_id,
  10459. feature.dbxref_id,
  10460. feature.organism_id,
  10461. feature.name,
  10462. feature.uniquename,
  10463. feature.residues,
  10464. feature.seqlen,
  10465. feature.md5checksum,
  10466. feature.type_id,
  10467. feature.is_analysis,
  10468. feature.is_obsolete,
  10469. feature.timeaccessioned,
  10470. feature.timelastmodified
  10471. FROM (feature
  10472. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10473. WHERE ((((cvterm.name)::text = 'intrachromosomal'::text) OR ((cvterm.name)::text = 'interchromosomal'::text)) OR ((cvterm.name)::text = 'chromosomal_variation_attribute'::text));
  10474. --
  10475. -- Name: chromosomally_aberrant_genome; Type: VIEW; Schema: so; Owner: -
  10476. --
  10477. CREATE VIEW chromosomally_aberrant_genome AS
  10478. SELECT feature.feature_id AS chromosomally_aberrant_genome_id,
  10479. feature.feature_id,
  10480. feature.dbxref_id,
  10481. feature.organism_id,
  10482. feature.name,
  10483. feature.uniquename,
  10484. feature.residues,
  10485. feature.seqlen,
  10486. feature.md5checksum,
  10487. feature.type_id,
  10488. feature.is_analysis,
  10489. feature.is_obsolete,
  10490. feature.timeaccessioned,
  10491. feature.timelastmodified
  10492. FROM (feature
  10493. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10494. WHERE ((cvterm.name)::text = 'chromosomally_aberrant_genome'::text);
  10495. --
  10496. -- Name: chromosome; Type: VIEW; Schema: so; Owner: -
  10497. --
  10498. CREATE VIEW chromosome AS
  10499. SELECT feature.feature_id AS chromosome_id,
  10500. feature.feature_id,
  10501. feature.dbxref_id,
  10502. feature.organism_id,
  10503. feature.name,
  10504. feature.uniquename,
  10505. feature.residues,
  10506. feature.seqlen,
  10507. feature.md5checksum,
  10508. feature.type_id,
  10509. feature.is_analysis,
  10510. feature.is_obsolete,
  10511. feature.timeaccessioned,
  10512. feature.timelastmodified
  10513. FROM (feature
  10514. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10515. WHERE ((((((((((((((((((((((((((cvterm.name)::text = 'mitochondrial_chromosome'::text) OR ((cvterm.name)::text = 'chloroplast_chromosome'::text)) OR ((cvterm.name)::text = 'chromoplast_chromosome'::text)) OR ((cvterm.name)::text = 'cyanelle_chromosome'::text)) OR ((cvterm.name)::text = 'leucoplast_chromosome'::text)) OR ((cvterm.name)::text = 'macronuclear_chromosome'::text)) OR ((cvterm.name)::text = 'micronuclear_chromosome'::text)) OR ((cvterm.name)::text = 'nuclear_chromosome'::text)) OR ((cvterm.name)::text = 'nucleomorphic_chromosome'::text)) OR ((cvterm.name)::text = 'DNA_chromosome'::text)) OR ((cvterm.name)::text = 'RNA_chromosome'::text)) OR ((cvterm.name)::text = 'apicoplast_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'chromosome'::text));
  10516. --
  10517. -- Name: chromosome_arm; Type: VIEW; Schema: so; Owner: -
  10518. --
  10519. CREATE VIEW chromosome_arm AS
  10520. SELECT feature.feature_id AS chromosome_arm_id,
  10521. feature.feature_id,
  10522. feature.dbxref_id,
  10523. feature.organism_id,
  10524. feature.name,
  10525. feature.uniquename,
  10526. feature.residues,
  10527. feature.seqlen,
  10528. feature.md5checksum,
  10529. feature.type_id,
  10530. feature.is_analysis,
  10531. feature.is_obsolete,
  10532. feature.timeaccessioned,
  10533. feature.timelastmodified
  10534. FROM (feature
  10535. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10536. WHERE ((cvterm.name)::text = 'chromosome_arm'::text);
  10537. --
  10538. -- Name: chromosome_band; Type: VIEW; Schema: so; Owner: -
  10539. --
  10540. CREATE VIEW chromosome_band AS
  10541. SELECT feature.feature_id AS chromosome_band_id,
  10542. feature.feature_id,
  10543. feature.dbxref_id,
  10544. feature.organism_id,
  10545. feature.name,
  10546. feature.uniquename,
  10547. feature.residues,
  10548. feature.seqlen,
  10549. feature.md5checksum,
  10550. feature.type_id,
  10551. feature.is_analysis,
  10552. feature.is_obsolete,
  10553. feature.timeaccessioned,
  10554. feature.timelastmodified
  10555. FROM (feature
  10556. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10557. WHERE ((cvterm.name)::text = 'chromosome_band'::text);
  10558. --
  10559. -- Name: chromosome_breakage_sequence; Type: VIEW; Schema: so; Owner: -
  10560. --
  10561. CREATE VIEW chromosome_breakage_sequence AS
  10562. SELECT feature.feature_id AS chromosome_breakage_sequence_id,
  10563. feature.feature_id,
  10564. feature.dbxref_id,
  10565. feature.organism_id,
  10566. feature.name,
  10567. feature.uniquename,
  10568. feature.residues,
  10569. feature.seqlen,
  10570. feature.md5checksum,
  10571. feature.type_id,
  10572. feature.is_analysis,
  10573. feature.is_obsolete,
  10574. feature.timeaccessioned,
  10575. feature.timelastmodified
  10576. FROM (feature
  10577. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10578. WHERE ((cvterm.name)::text = 'chromosome_breakage_sequence'::text);
  10579. --
  10580. -- Name: chromosome_breakpoint; Type: VIEW; Schema: so; Owner: -
  10581. --
  10582. CREATE VIEW chromosome_breakpoint AS
  10583. SELECT feature.feature_id AS chromosome_breakpoint_id,
  10584. feature.feature_id,
  10585. feature.dbxref_id,
  10586. feature.organism_id,
  10587. feature.name,
  10588. feature.uniquename,
  10589. feature.residues,
  10590. feature.seqlen,
  10591. feature.md5checksum,
  10592. feature.type_id,
  10593. feature.is_analysis,
  10594. feature.is_obsolete,
  10595. feature.timeaccessioned,
  10596. feature.timelastmodified
  10597. FROM (feature
  10598. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10599. WHERE ((((((cvterm.name)::text = 'inversion_breakpoint'::text) OR ((cvterm.name)::text = 'translocation_breakpoint'::text)) OR ((cvterm.name)::text = 'insertion_breakpoint'::text)) OR ((cvterm.name)::text = 'deletion_breakpoint'::text)) OR ((cvterm.name)::text = 'chromosome_breakpoint'::text));
  10600. --
  10601. -- Name: chromosome_fission; Type: VIEW; Schema: so; Owner: -
  10602. --
  10603. CREATE VIEW chromosome_fission AS
  10604. SELECT feature.feature_id AS chromosome_fission_id,
  10605. feature.feature_id,
  10606. feature.dbxref_id,
  10607. feature.organism_id,
  10608. feature.name,
  10609. feature.uniquename,
  10610. feature.residues,
  10611. feature.seqlen,
  10612. feature.md5checksum,
  10613. feature.type_id,
  10614. feature.is_analysis,
  10615. feature.is_obsolete,
  10616. feature.timeaccessioned,
  10617. feature.timelastmodified
  10618. FROM (feature
  10619. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10620. WHERE ((cvterm.name)::text = 'chromosome_fission'::text);
  10621. --
  10622. -- Name: chromosome_number_variation; Type: VIEW; Schema: so; Owner: -
  10623. --
  10624. CREATE VIEW chromosome_number_variation AS
  10625. SELECT feature.feature_id AS chromosome_number_variation_id,
  10626. feature.feature_id,
  10627. feature.dbxref_id,
  10628. feature.organism_id,
  10629. feature.name,
  10630. feature.uniquename,
  10631. feature.residues,
  10632. feature.seqlen,
  10633. feature.md5checksum,
  10634. feature.type_id,
  10635. feature.is_analysis,
  10636. feature.is_obsolete,
  10637. feature.timeaccessioned,
  10638. feature.timelastmodified
  10639. FROM (feature
  10640. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10641. WHERE ((((((((cvterm.name)::text = 'aneuploid'::text) OR ((cvterm.name)::text = 'polyploid'::text)) OR ((cvterm.name)::text = 'hyperploid'::text)) OR ((cvterm.name)::text = 'hypoploid'::text)) OR ((cvterm.name)::text = 'autopolyploid'::text)) OR ((cvterm.name)::text = 'allopolyploid'::text)) OR ((cvterm.name)::text = 'chromosome_number_variation'::text));
  10642. --
  10643. -- Name: chromosome_part; Type: VIEW; Schema: so; Owner: -
  10644. --
  10645. CREATE VIEW chromosome_part AS
  10646. SELECT feature.feature_id AS chromosome_part_id,
  10647. feature.feature_id,
  10648. feature.dbxref_id,
  10649. feature.organism_id,
  10650. feature.name,
  10651. feature.uniquename,
  10652. feature.residues,
  10653. feature.seqlen,
  10654. feature.md5checksum,
  10655. feature.type_id,
  10656. feature.is_analysis,
  10657. feature.is_obsolete,
  10658. feature.timeaccessioned,
  10659. feature.timelastmodified
  10660. FROM (feature
  10661. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10662. WHERE (((((((((((((cvterm.name)::text = 'chromosome_arm'::text) OR ((cvterm.name)::text = 'chromosome_band'::text)) OR ((cvterm.name)::text = 'interband'::text)) OR ((cvterm.name)::text = 'chromosomal_regulatory_element'::text)) OR ((cvterm.name)::text = 'chromosomal_structural_element'::text)) OR ((cvterm.name)::text = 'introgressed_chromosome_region'::text)) OR ((cvterm.name)::text = 'matrix_attachment_site'::text)) OR ((cvterm.name)::text = 'centromere'::text)) OR ((cvterm.name)::text = 'telomere'::text)) OR ((cvterm.name)::text = 'point_centromere'::text)) OR ((cvterm.name)::text = 'regional_centromere'::text)) OR ((cvterm.name)::text = 'chromosome_part'::text));
  10663. --
  10664. -- Name: chromosome_structure_variation; Type: VIEW; Schema: so; Owner: -
  10665. --
  10666. CREATE VIEW chromosome_structure_variation AS
  10667. SELECT feature.feature_id AS chromosome_structure_variation_id,
  10668. feature.feature_id,
  10669. feature.dbxref_id,
  10670. feature.organism_id,
  10671. feature.name,
  10672. feature.uniquename,
  10673. feature.residues,
  10674. feature.seqlen,
  10675. feature.md5checksum,
  10676. feature.type_id,
  10677. feature.is_analysis,
  10678. feature.is_obsolete,
  10679. feature.timeaccessioned,
  10680. feature.timelastmodified
  10681. FROM (feature
  10682. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10683. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'free_chromosome_arm'::text) OR ((cvterm.name)::text = 'chromosomal_transposition'::text)) OR ((cvterm.name)::text = 'aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'intrachromosomal_mutation'::text)) OR ((cvterm.name)::text = 'interchromosomal_mutation'::text)) OR ((cvterm.name)::text = 'chromosomal_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome'::text)) OR ((cvterm.name)::text = 'autosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'complex_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'uncharacterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'chromosomal_deletion'::text)) OR ((cvterm.name)::text = 'chromosomal_inversion'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'ring_chromosome'::text)) OR ((cvterm.name)::text = 'chromosome_fission'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_deficiency'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'pericentric_inversion'::text)) OR ((cvterm.name)::text = 'paracentric_inversion'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'translocation_element'::text)) OR ((cvterm.name)::text = 'Robertsonian_fusion'::text)) OR ((cvterm.name)::text = 'reciprocal_chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'cyclic_translocation'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_duplication'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'free_duplication'::text)) OR ((cvterm.name)::text = 'insertional_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'uninverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'inverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'unoriented_insertional_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome_arm'::text)) OR ((cvterm.name)::text = 'homo_compound_chromosome'::text)) OR ((cvterm.name)::text = 'hetero_compound_chromosome'::text)) OR ((cvterm.name)::text = 'dexstrosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'laevosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'partially_characterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'chromosome_structure_variation'::text));
  10684. --
  10685. -- Name: chromosome_variation; Type: VIEW; Schema: so; Owner: -
  10686. --
  10687. CREATE VIEW chromosome_variation AS
  10688. SELECT feature.feature_id AS chromosome_variation_id,
  10689. feature.feature_id,
  10690. feature.dbxref_id,
  10691. feature.organism_id,
  10692. feature.name,
  10693. feature.uniquename,
  10694. feature.residues,
  10695. feature.seqlen,
  10696. feature.md5checksum,
  10697. feature.type_id,
  10698. feature.is_analysis,
  10699. feature.is_obsolete,
  10700. feature.timeaccessioned,
  10701. feature.timelastmodified
  10702. FROM (feature
  10703. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10704. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'assortment_derived_variation'::text) OR ((cvterm.name)::text = 'chromosome_number_variation'::text)) OR ((cvterm.name)::text = 'chromosome_structure_variation'::text)) OR ((cvterm.name)::text = 'assortment_derived_duplication'::text)) OR ((cvterm.name)::text = 'assortment_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'assortment_derived_deficiency'::text)) OR ((cvterm.name)::text = 'assortment_derived_aneuploid'::text)) OR ((cvterm.name)::text = 'aneuploid'::text)) OR ((cvterm.name)::text = 'polyploid'::text)) OR ((cvterm.name)::text = 'hyperploid'::text)) OR ((cvterm.name)::text = 'hypoploid'::text)) OR ((cvterm.name)::text = 'autopolyploid'::text)) OR ((cvterm.name)::text = 'allopolyploid'::text)) OR ((cvterm.name)::text = 'free_chromosome_arm'::text)) OR ((cvterm.name)::text = 'chromosomal_transposition'::text)) OR ((cvterm.name)::text = 'aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'intrachromosomal_mutation'::text)) OR ((cvterm.name)::text = 'interchromosomal_mutation'::text)) OR ((cvterm.name)::text = 'chromosomal_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome'::text)) OR ((cvterm.name)::text = 'autosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'complex_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'uncharacterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'chromosomal_deletion'::text)) OR ((cvterm.name)::text = 'chromosomal_inversion'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'ring_chromosome'::text)) OR ((cvterm.name)::text = 'chromosome_fission'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_deficiency'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'pericentric_inversion'::text)) OR ((cvterm.name)::text = 'paracentric_inversion'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'translocation_element'::text)) OR ((cvterm.name)::text = 'Robertsonian_fusion'::text)) OR ((cvterm.name)::text = 'reciprocal_chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'cyclic_translocation'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_duplication'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'free_duplication'::text)) OR ((cvterm.name)::text = 'insertional_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'uninverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'inverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'unoriented_insertional_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome_arm'::text)) OR ((cvterm.name)::text = 'homo_compound_chromosome'::text)) OR ((cvterm.name)::text = 'hetero_compound_chromosome'::text)) OR ((cvterm.name)::text = 'dexstrosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'laevosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'partially_characterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'chromosome_variation'::text));
  10705. --
  10706. -- Name: circular; Type: VIEW; Schema: so; Owner: -
  10707. --
  10708. CREATE VIEW circular AS
  10709. SELECT feature.feature_id AS circular_id,
  10710. feature.feature_id,
  10711. feature.dbxref_id,
  10712. feature.organism_id,
  10713. feature.name,
  10714. feature.uniquename,
  10715. feature.residues,
  10716. feature.seqlen,
  10717. feature.md5checksum,
  10718. feature.type_id,
  10719. feature.is_analysis,
  10720. feature.is_obsolete,
  10721. feature.timeaccessioned,
  10722. feature.timelastmodified
  10723. FROM (feature
  10724. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10725. WHERE ((cvterm.name)::text = 'circular'::text);
  10726. --
  10727. -- Name: circular_double_stranded_dna_chromosome; Type: VIEW; Schema: so; Owner: -
  10728. --
  10729. CREATE VIEW circular_double_stranded_dna_chromosome AS
  10730. SELECT feature.feature_id AS circular_double_stranded_dna_chromosome_id,
  10731. feature.feature_id,
  10732. feature.dbxref_id,
  10733. feature.organism_id,
  10734. feature.name,
  10735. feature.uniquename,
  10736. feature.residues,
  10737. feature.seqlen,
  10738. feature.md5checksum,
  10739. feature.type_id,
  10740. feature.is_analysis,
  10741. feature.is_obsolete,
  10742. feature.timeaccessioned,
  10743. feature.timelastmodified
  10744. FROM (feature
  10745. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10746. WHERE ((cvterm.name)::text = 'circular_double_stranded_DNA_chromosome'::text);
  10747. --
  10748. -- Name: circular_double_stranded_rna_chromosome; Type: VIEW; Schema: so; Owner: -
  10749. --
  10750. CREATE VIEW circular_double_stranded_rna_chromosome AS
  10751. SELECT feature.feature_id AS circular_double_stranded_rna_chromosome_id,
  10752. feature.feature_id,
  10753. feature.dbxref_id,
  10754. feature.organism_id,
  10755. feature.name,
  10756. feature.uniquename,
  10757. feature.residues,
  10758. feature.seqlen,
  10759. feature.md5checksum,
  10760. feature.type_id,
  10761. feature.is_analysis,
  10762. feature.is_obsolete,
  10763. feature.timeaccessioned,
  10764. feature.timelastmodified
  10765. FROM (feature
  10766. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10767. WHERE ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text);
  10768. --
  10769. -- Name: circular_single_stranded_dna_chromosome; Type: VIEW; Schema: so; Owner: -
  10770. --
  10771. CREATE VIEW circular_single_stranded_dna_chromosome AS
  10772. SELECT feature.feature_id AS circular_single_stranded_dna_chromosome_id,
  10773. feature.feature_id,
  10774. feature.dbxref_id,
  10775. feature.organism_id,
  10776. feature.name,
  10777. feature.uniquename,
  10778. feature.residues,
  10779. feature.seqlen,
  10780. feature.md5checksum,
  10781. feature.type_id,
  10782. feature.is_analysis,
  10783. feature.is_obsolete,
  10784. feature.timeaccessioned,
  10785. feature.timelastmodified
  10786. FROM (feature
  10787. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10788. WHERE ((cvterm.name)::text = 'circular_single_stranded_DNA_chromosome'::text);
  10789. --
  10790. -- Name: circular_single_stranded_rna_chromosome; Type: VIEW; Schema: so; Owner: -
  10791. --
  10792. CREATE VIEW circular_single_stranded_rna_chromosome AS
  10793. SELECT feature.feature_id AS circular_single_stranded_rna_chromosome_id,
  10794. feature.feature_id,
  10795. feature.dbxref_id,
  10796. feature.organism_id,
  10797. feature.name,
  10798. feature.uniquename,
  10799. feature.residues,
  10800. feature.seqlen,
  10801. feature.md5checksum,
  10802. feature.type_id,
  10803. feature.is_analysis,
  10804. feature.is_obsolete,
  10805. feature.timeaccessioned,
  10806. feature.timelastmodified
  10807. FROM (feature
  10808. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10809. WHERE ((cvterm.name)::text = 'circular_single_stranded_RNA_chromosome'::text);
  10810. --
  10811. -- Name: cis_regulatory_frameshift_element; Type: VIEW; Schema: so; Owner: -
  10812. --
  10813. CREATE VIEW cis_regulatory_frameshift_element AS
  10814. SELECT feature.feature_id AS cis_regulatory_frameshift_element_id,
  10815. feature.feature_id,
  10816. feature.dbxref_id,
  10817. feature.organism_id,
  10818. feature.name,
  10819. feature.uniquename,
  10820. feature.residues,
  10821. feature.seqlen,
  10822. feature.md5checksum,
  10823. feature.type_id,
  10824. feature.is_analysis,
  10825. feature.is_obsolete,
  10826. feature.timeaccessioned,
  10827. feature.timelastmodified
  10828. FROM (feature
  10829. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10830. WHERE ((cvterm.name)::text = 'cis_regulatory_frameshift_element'::text);
  10831. --
  10832. -- Name: cis_splice_site; Type: VIEW; Schema: so; Owner: -
  10833. --
  10834. CREATE VIEW cis_splice_site AS
  10835. SELECT feature.feature_id AS cis_splice_site_id,
  10836. feature.feature_id,
  10837. feature.dbxref_id,
  10838. feature.organism_id,
  10839. feature.name,
  10840. feature.uniquename,
  10841. feature.residues,
  10842. feature.seqlen,
  10843. feature.md5checksum,
  10844. feature.type_id,
  10845. feature.is_analysis,
  10846. feature.is_obsolete,
  10847. feature.timeaccessioned,
  10848. feature.timelastmodified
  10849. FROM (feature
  10850. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10851. WHERE (((((((((cvterm.name)::text = 'five_prime_cis_splice_site'::text) OR ((cvterm.name)::text = 'three_prime_cis_splice_site'::text)) OR ((cvterm.name)::text = 'recursive_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'cis_splice_site'::text));
  10852. --
  10853. -- Name: class_i_rna; Type: VIEW; Schema: so; Owner: -
  10854. --
  10855. CREATE VIEW class_i_rna AS
  10856. SELECT feature.feature_id AS class_i_rna_id,
  10857. feature.feature_id,
  10858. feature.dbxref_id,
  10859. feature.organism_id,
  10860. feature.name,
  10861. feature.uniquename,
  10862. feature.residues,
  10863. feature.seqlen,
  10864. feature.md5checksum,
  10865. feature.type_id,
  10866. feature.is_analysis,
  10867. feature.is_obsolete,
  10868. feature.timeaccessioned,
  10869. feature.timelastmodified
  10870. FROM (feature
  10871. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10872. WHERE ((cvterm.name)::text = 'class_I_RNA'::text);
  10873. --
  10874. -- Name: class_ii_rna; Type: VIEW; Schema: so; Owner: -
  10875. --
  10876. CREATE VIEW class_ii_rna AS
  10877. SELECT feature.feature_id AS class_ii_rna_id,
  10878. feature.feature_id,
  10879. feature.dbxref_id,
  10880. feature.organism_id,
  10881. feature.name,
  10882. feature.uniquename,
  10883. feature.residues,
  10884. feature.seqlen,
  10885. feature.md5checksum,
  10886. feature.type_id,
  10887. feature.is_analysis,
  10888. feature.is_obsolete,
  10889. feature.timeaccessioned,
  10890. feature.timelastmodified
  10891. FROM (feature
  10892. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10893. WHERE ((cvterm.name)::text = 'class_II_RNA'::text);
  10894. --
  10895. -- Name: cleaved_for_gpi_anchor_region; Type: VIEW; Schema: so; Owner: -
  10896. --
  10897. CREATE VIEW cleaved_for_gpi_anchor_region AS
  10898. SELECT feature.feature_id AS cleaved_for_gpi_anchor_region_id,
  10899. feature.feature_id,
  10900. feature.dbxref_id,
  10901. feature.organism_id,
  10902. feature.name,
  10903. feature.uniquename,
  10904. feature.residues,
  10905. feature.seqlen,
  10906. feature.md5checksum,
  10907. feature.type_id,
  10908. feature.is_analysis,
  10909. feature.is_obsolete,
  10910. feature.timeaccessioned,
  10911. feature.timelastmodified
  10912. FROM (feature
  10913. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10914. WHERE ((cvterm.name)::text = 'cleaved_for_gpi_anchor_region'::text);
  10915. --
  10916. -- Name: cleaved_initiator_methionine; Type: VIEW; Schema: so; Owner: -
  10917. --
  10918. CREATE VIEW cleaved_initiator_methionine AS
  10919. SELECT feature.feature_id AS cleaved_initiator_methionine_id,
  10920. feature.feature_id,
  10921. feature.dbxref_id,
  10922. feature.organism_id,
  10923. feature.name,
  10924. feature.uniquename,
  10925. feature.residues,
  10926. feature.seqlen,
  10927. feature.md5checksum,
  10928. feature.type_id,
  10929. feature.is_analysis,
  10930. feature.is_obsolete,
  10931. feature.timeaccessioned,
  10932. feature.timelastmodified
  10933. FROM (feature
  10934. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10935. WHERE ((cvterm.name)::text = 'cleaved_initiator_methionine'::text);
  10936. --
  10937. -- Name: cleaved_peptide_region; Type: VIEW; Schema: so; Owner: -
  10938. --
  10939. CREATE VIEW cleaved_peptide_region AS
  10940. SELECT feature.feature_id AS cleaved_peptide_region_id,
  10941. feature.feature_id,
  10942. feature.dbxref_id,
  10943. feature.organism_id,
  10944. feature.name,
  10945. feature.uniquename,
  10946. feature.residues,
  10947. feature.seqlen,
  10948. feature.md5checksum,
  10949. feature.type_id,
  10950. feature.is_analysis,
  10951. feature.is_obsolete,
  10952. feature.timeaccessioned,
  10953. feature.timelastmodified
  10954. FROM (feature
  10955. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10956. WHERE (((((((((((cvterm.name)::text = 'cleaved_initiator_methionine'::text) OR ((cvterm.name)::text = 'intein'::text)) OR ((cvterm.name)::text = 'propeptide_cleavage_site'::text)) OR ((cvterm.name)::text = 'propeptide'::text)) OR ((cvterm.name)::text = 'cleaved_for_gpi_anchor_region'::text)) OR ((cvterm.name)::text = 'lipoprotein_signal_peptide'::text)) OR ((cvterm.name)::text = 'n_terminal_region'::text)) OR ((cvterm.name)::text = 'c_terminal_region'::text)) OR ((cvterm.name)::text = 'central_hydrophobic_region_of_signal_peptide'::text)) OR ((cvterm.name)::text = 'cleaved_peptide_region'::text));
  10957. --
  10958. -- Name: clip; Type: VIEW; Schema: so; Owner: -
  10959. --
  10960. CREATE VIEW clip AS
  10961. SELECT feature.feature_id AS clip_id,
  10962. feature.feature_id,
  10963. feature.dbxref_id,
  10964. feature.organism_id,
  10965. feature.name,
  10966. feature.uniquename,
  10967. feature.residues,
  10968. feature.seqlen,
  10969. feature.md5checksum,
  10970. feature.type_id,
  10971. feature.is_analysis,
  10972. feature.is_obsolete,
  10973. feature.timeaccessioned,
  10974. feature.timelastmodified
  10975. FROM (feature
  10976. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10977. WHERE ((((cvterm.name)::text = 'five_prime_clip'::text) OR ((cvterm.name)::text = 'three_prime_clip'::text)) OR ((cvterm.name)::text = 'clip'::text));
  10978. --
  10979. -- Name: clone; Type: VIEW; Schema: so; Owner: -
  10980. --
  10981. CREATE VIEW clone AS
  10982. SELECT feature.feature_id AS clone_id,
  10983. feature.feature_id,
  10984. feature.dbxref_id,
  10985. feature.organism_id,
  10986. feature.name,
  10987. feature.uniquename,
  10988. feature.residues,
  10989. feature.seqlen,
  10990. feature.md5checksum,
  10991. feature.type_id,
  10992. feature.is_analysis,
  10993. feature.is_obsolete,
  10994. feature.timeaccessioned,
  10995. feature.timelastmodified
  10996. FROM (feature
  10997. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  10998. WHERE ((((((((((((cvterm.name)::text = 'genomic_clone'::text) OR ((cvterm.name)::text = 'cDNA_clone'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'validated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'invalidated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'three_prime_RACE_clone'::text)) OR ((cvterm.name)::text = 'chimeric_cDNA_clone'::text)) OR ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'clone'::text));
  10999. --
  11000. -- Name: clone_end; Type: VIEW; Schema: so; Owner: -
  11001. --
  11002. CREATE VIEW clone_end AS
  11003. SELECT feature.feature_id AS clone_end_id,
  11004. feature.feature_id,
  11005. feature.dbxref_id,
  11006. feature.organism_id,
  11007. feature.name,
  11008. feature.uniquename,
  11009. feature.residues,
  11010. feature.seqlen,
  11011. feature.md5checksum,
  11012. feature.type_id,
  11013. feature.is_analysis,
  11014. feature.is_obsolete,
  11015. feature.timeaccessioned,
  11016. feature.timelastmodified
  11017. FROM (feature
  11018. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11019. WHERE ((cvterm.name)::text = 'clone_end'::text);
  11020. --
  11021. -- Name: clone_insert; Type: VIEW; Schema: so; Owner: -
  11022. --
  11023. CREATE VIEW clone_insert AS
  11024. SELECT feature.feature_id AS clone_insert_id,
  11025. feature.feature_id,
  11026. feature.dbxref_id,
  11027. feature.organism_id,
  11028. feature.name,
  11029. feature.uniquename,
  11030. feature.residues,
  11031. feature.seqlen,
  11032. feature.md5checksum,
  11033. feature.type_id,
  11034. feature.is_analysis,
  11035. feature.is_obsolete,
  11036. feature.timeaccessioned,
  11037. feature.timelastmodified
  11038. FROM (feature
  11039. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11040. WHERE ((((((cvterm.name)::text = 'cloned_cDNA_insert'::text) OR ((cvterm.name)::text = 'cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'BAC_cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'clone_insert'::text));
  11041. --
  11042. -- Name: clone_insert_end; Type: VIEW; Schema: so; Owner: -
  11043. --
  11044. CREATE VIEW clone_insert_end AS
  11045. SELECT feature.feature_id AS clone_insert_end_id,
  11046. feature.feature_id,
  11047. feature.dbxref_id,
  11048. feature.organism_id,
  11049. feature.name,
  11050. feature.uniquename,
  11051. feature.residues,
  11052. feature.seqlen,
  11053. feature.md5checksum,
  11054. feature.type_id,
  11055. feature.is_analysis,
  11056. feature.is_obsolete,
  11057. feature.timeaccessioned,
  11058. feature.timelastmodified
  11059. FROM (feature
  11060. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11061. WHERE ((cvterm.name)::text = 'clone_insert_end'::text);
  11062. --
  11063. -- Name: clone_insert_start; Type: VIEW; Schema: so; Owner: -
  11064. --
  11065. CREATE VIEW clone_insert_start AS
  11066. SELECT feature.feature_id AS clone_insert_start_id,
  11067. feature.feature_id,
  11068. feature.dbxref_id,
  11069. feature.organism_id,
  11070. feature.name,
  11071. feature.uniquename,
  11072. feature.residues,
  11073. feature.seqlen,
  11074. feature.md5checksum,
  11075. feature.type_id,
  11076. feature.is_analysis,
  11077. feature.is_obsolete,
  11078. feature.timeaccessioned,
  11079. feature.timelastmodified
  11080. FROM (feature
  11081. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11082. WHERE ((cvterm.name)::text = 'clone_insert_start'::text);
  11083. --
  11084. -- Name: cloned_cdna_insert; Type: VIEW; Schema: so; Owner: -
  11085. --
  11086. CREATE VIEW cloned_cdna_insert AS
  11087. SELECT feature.feature_id AS cloned_cdna_insert_id,
  11088. feature.feature_id,
  11089. feature.dbxref_id,
  11090. feature.organism_id,
  11091. feature.name,
  11092. feature.uniquename,
  11093. feature.residues,
  11094. feature.seqlen,
  11095. feature.md5checksum,
  11096. feature.type_id,
  11097. feature.is_analysis,
  11098. feature.is_obsolete,
  11099. feature.timeaccessioned,
  11100. feature.timelastmodified
  11101. FROM (feature
  11102. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11103. WHERE ((cvterm.name)::text = 'cloned_cDNA_insert'::text);
  11104. --
  11105. -- Name: cloned_genomic_insert; Type: VIEW; Schema: so; Owner: -
  11106. --
  11107. CREATE VIEW cloned_genomic_insert AS
  11108. SELECT feature.feature_id AS cloned_genomic_insert_id,
  11109. feature.feature_id,
  11110. feature.dbxref_id,
  11111. feature.organism_id,
  11112. feature.name,
  11113. feature.uniquename,
  11114. feature.residues,
  11115. feature.seqlen,
  11116. feature.md5checksum,
  11117. feature.type_id,
  11118. feature.is_analysis,
  11119. feature.is_obsolete,
  11120. feature.timeaccessioned,
  11121. feature.timelastmodified
  11122. FROM (feature
  11123. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11124. WHERE (((cvterm.name)::text = 'BAC_cloned_genomic_insert'::text) OR ((cvterm.name)::text = 'cloned_genomic_insert'::text));
  11125. --
  11126. -- Name: cloned_region; Type: VIEW; Schema: so; Owner: -
  11127. --
  11128. CREATE VIEW cloned_region AS
  11129. SELECT feature.feature_id AS cloned_region_id,
  11130. feature.feature_id,
  11131. feature.dbxref_id,
  11132. feature.organism_id,
  11133. feature.name,
  11134. feature.uniquename,
  11135. feature.residues,
  11136. feature.seqlen,
  11137. feature.md5checksum,
  11138. feature.type_id,
  11139. feature.is_analysis,
  11140. feature.is_obsolete,
  11141. feature.timeaccessioned,
  11142. feature.timelastmodified
  11143. FROM (feature
  11144. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11145. WHERE ((cvterm.name)::text = 'cloned_region'::text);
  11146. --
  11147. -- Name: coding_conserved_region; Type: VIEW; Schema: so; Owner: -
  11148. --
  11149. CREATE VIEW coding_conserved_region AS
  11150. SELECT feature.feature_id AS coding_conserved_region_id,
  11151. feature.feature_id,
  11152. feature.dbxref_id,
  11153. feature.organism_id,
  11154. feature.name,
  11155. feature.uniquename,
  11156. feature.residues,
  11157. feature.seqlen,
  11158. feature.md5checksum,
  11159. feature.type_id,
  11160. feature.is_analysis,
  11161. feature.is_obsolete,
  11162. feature.timeaccessioned,
  11163. feature.timelastmodified
  11164. FROM (feature
  11165. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11166. WHERE ((cvterm.name)::text = 'coding_conserved_region'::text);
  11167. --
  11168. -- Name: coding_end; Type: VIEW; Schema: so; Owner: -
  11169. --
  11170. CREATE VIEW coding_end AS
  11171. SELECT feature.feature_id AS coding_end_id,
  11172. feature.feature_id,
  11173. feature.dbxref_id,
  11174. feature.organism_id,
  11175. feature.name,
  11176. feature.uniquename,
  11177. feature.residues,
  11178. feature.seqlen,
  11179. feature.md5checksum,
  11180. feature.type_id,
  11181. feature.is_analysis,
  11182. feature.is_obsolete,
  11183. feature.timeaccessioned,
  11184. feature.timelastmodified
  11185. FROM (feature
  11186. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11187. WHERE ((cvterm.name)::text = 'coding_end'::text);
  11188. --
  11189. -- Name: coding_exon; Type: VIEW; Schema: so; Owner: -
  11190. --
  11191. CREATE VIEW coding_exon AS
  11192. SELECT feature.feature_id AS coding_exon_id,
  11193. feature.feature_id,
  11194. feature.dbxref_id,
  11195. feature.organism_id,
  11196. feature.name,
  11197. feature.uniquename,
  11198. feature.residues,
  11199. feature.seqlen,
  11200. feature.md5checksum,
  11201. feature.type_id,
  11202. feature.is_analysis,
  11203. feature.is_obsolete,
  11204. feature.timeaccessioned,
  11205. feature.timelastmodified
  11206. FROM (feature
  11207. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11208. WHERE (((((cvterm.name)::text = 'interior_coding_exon'::text) OR ((cvterm.name)::text = 'five_prime_coding_exon'::text)) OR ((cvterm.name)::text = 'three_prime_coding_exon'::text)) OR ((cvterm.name)::text = 'coding_exon'::text));
  11209. --
  11210. -- Name: coding_region_of_exon; Type: VIEW; Schema: so; Owner: -
  11211. --
  11212. CREATE VIEW coding_region_of_exon AS
  11213. SELECT feature.feature_id AS coding_region_of_exon_id,
  11214. feature.feature_id,
  11215. feature.dbxref_id,
  11216. feature.organism_id,
  11217. feature.name,
  11218. feature.uniquename,
  11219. feature.residues,
  11220. feature.seqlen,
  11221. feature.md5checksum,
  11222. feature.type_id,
  11223. feature.is_analysis,
  11224. feature.is_obsolete,
  11225. feature.timeaccessioned,
  11226. feature.timelastmodified
  11227. FROM (feature
  11228. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11229. WHERE ((((cvterm.name)::text = 'five_prime_coding_exon_coding_region'::text) OR ((cvterm.name)::text = 'three_prime_coding_exon_coding_region'::text)) OR ((cvterm.name)::text = 'coding_region_of_exon'::text));
  11230. --
  11231. -- Name: coding_sequence_variant; Type: VIEW; Schema: so; Owner: -
  11232. --
  11233. CREATE VIEW coding_sequence_variant AS
  11234. SELECT feature.feature_id AS coding_sequence_variant_id,
  11235. feature.feature_id,
  11236. feature.dbxref_id,
  11237. feature.organism_id,
  11238. feature.name,
  11239. feature.uniquename,
  11240. feature.residues,
  11241. feature.seqlen,
  11242. feature.md5checksum,
  11243. feature.type_id,
  11244. feature.is_analysis,
  11245. feature.is_obsolete,
  11246. feature.timeaccessioned,
  11247. feature.timelastmodified
  11248. FROM (feature
  11249. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11250. WHERE ((((((((((((((((((((((((cvterm.name)::text = 'codon_variant'::text) OR ((cvterm.name)::text = 'frameshift_variant'::text)) OR ((cvterm.name)::text = 'inframe_variant'::text)) OR ((cvterm.name)::text = 'initiator_codon_change'::text)) OR ((cvterm.name)::text = 'non_synonymous_codon'::text)) OR ((cvterm.name)::text = 'synonymous_codon'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_gained'::text)) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text)) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'frame_restoring_variant'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_2_frameshift variant'::text)) OR ((cvterm.name)::text = 'inframe_codon_gain'::text)) OR ((cvterm.name)::text = 'inframe_codon_loss'::text)) OR ((cvterm.name)::text = 'coding_sequence_variant'::text));
  11251. --
  11252. -- Name: coding_start; Type: VIEW; Schema: so; Owner: -
  11253. --
  11254. CREATE VIEW coding_start AS
  11255. SELECT feature.feature_id AS coding_start_id,
  11256. feature.feature_id,
  11257. feature.dbxref_id,
  11258. feature.organism_id,
  11259. feature.name,
  11260. feature.uniquename,
  11261. feature.residues,
  11262. feature.seqlen,
  11263. feature.md5checksum,
  11264. feature.type_id,
  11265. feature.is_analysis,
  11266. feature.is_obsolete,
  11267. feature.timeaccessioned,
  11268. feature.timelastmodified
  11269. FROM (feature
  11270. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11271. WHERE ((cvterm.name)::text = 'coding_start'::text);
  11272. --
  11273. -- Name: codon; Type: VIEW; Schema: so; Owner: -
  11274. --
  11275. CREATE VIEW codon AS
  11276. SELECT feature.feature_id AS codon_id,
  11277. feature.feature_id,
  11278. feature.dbxref_id,
  11279. feature.organism_id,
  11280. feature.name,
  11281. feature.uniquename,
  11282. feature.residues,
  11283. feature.seqlen,
  11284. feature.md5checksum,
  11285. feature.type_id,
  11286. feature.is_analysis,
  11287. feature.is_obsolete,
  11288. feature.timeaccessioned,
  11289. feature.timelastmodified
  11290. FROM (feature
  11291. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11292. WHERE (((((((((((cvterm.name)::text = 'recoded_codon'::text) OR ((cvterm.name)::text = 'start_codon'::text)) OR ((cvterm.name)::text = 'stop_codon'::text)) OR ((cvterm.name)::text = 'stop_codon_read_through'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'non_canonical_start_codon'::text)) OR ((cvterm.name)::text = 'four_bp_start_codon'::text)) OR ((cvterm.name)::text = 'CTG_start_codon'::text)) OR ((cvterm.name)::text = 'codon'::text));
  11293. --
  11294. -- Name: codon_redefined; Type: VIEW; Schema: so; Owner: -
  11295. --
  11296. CREATE VIEW codon_redefined AS
  11297. SELECT feature.feature_id AS codon_redefined_id,
  11298. feature.feature_id,
  11299. feature.dbxref_id,
  11300. feature.organism_id,
  11301. feature.name,
  11302. feature.uniquename,
  11303. feature.residues,
  11304. feature.seqlen,
  11305. feature.md5checksum,
  11306. feature.type_id,
  11307. feature.is_analysis,
  11308. feature.is_obsolete,
  11309. feature.timeaccessioned,
  11310. feature.timelastmodified
  11311. FROM (feature
  11312. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11313. WHERE ((cvterm.name)::text = 'codon_redefined'::text);
  11314. --
  11315. -- Name: codon_variant; Type: VIEW; Schema: so; Owner: -
  11316. --
  11317. CREATE VIEW codon_variant AS
  11318. SELECT feature.feature_id AS codon_variant_id,
  11319. feature.feature_id,
  11320. feature.dbxref_id,
  11321. feature.organism_id,
  11322. feature.name,
  11323. feature.uniquename,
  11324. feature.residues,
  11325. feature.seqlen,
  11326. feature.md5checksum,
  11327. feature.type_id,
  11328. feature.is_analysis,
  11329. feature.is_obsolete,
  11330. feature.timeaccessioned,
  11331. feature.timelastmodified
  11332. FROM (feature
  11333. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11334. WHERE ((((((((((((((cvterm.name)::text = 'initiator_codon_change'::text) OR ((cvterm.name)::text = 'non_synonymous_codon'::text)) OR ((cvterm.name)::text = 'synonymous_codon'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_gained'::text)) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text)) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'codon_variant'::text));
  11335. --
  11336. -- Name: coiled_coil; Type: VIEW; Schema: so; Owner: -
  11337. --
  11338. CREATE VIEW coiled_coil AS
  11339. SELECT feature.feature_id AS coiled_coil_id,
  11340. feature.feature_id,
  11341. feature.dbxref_id,
  11342. feature.organism_id,
  11343. feature.name,
  11344. feature.uniquename,
  11345. feature.residues,
  11346. feature.seqlen,
  11347. feature.md5checksum,
  11348. feature.type_id,
  11349. feature.is_analysis,
  11350. feature.is_obsolete,
  11351. feature.timeaccessioned,
  11352. feature.timelastmodified
  11353. FROM (feature
  11354. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11355. WHERE ((cvterm.name)::text = 'coiled_coil'::text);
  11356. --
  11357. -- Name: cointegrated_plasmid; Type: VIEW; Schema: so; Owner: -
  11358. --
  11359. CREATE VIEW cointegrated_plasmid AS
  11360. SELECT feature.feature_id AS cointegrated_plasmid_id,
  11361. feature.feature_id,
  11362. feature.dbxref_id,
  11363. feature.organism_id,
  11364. feature.name,
  11365. feature.uniquename,
  11366. feature.residues,
  11367. feature.seqlen,
  11368. feature.md5checksum,
  11369. feature.type_id,
  11370. feature.is_analysis,
  11371. feature.is_obsolete,
  11372. feature.timeaccessioned,
  11373. feature.timelastmodified
  11374. FROM (feature
  11375. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11376. WHERE ((cvterm.name)::text = 'cointegrated_plasmid'::text);
  11377. --
  11378. -- Name: common_variant; Type: VIEW; Schema: so; Owner: -
  11379. --
  11380. CREATE VIEW common_variant AS
  11381. SELECT feature.feature_id AS common_variant_id,
  11382. feature.feature_id,
  11383. feature.dbxref_id,
  11384. feature.organism_id,
  11385. feature.name,
  11386. feature.uniquename,
  11387. feature.residues,
  11388. feature.seqlen,
  11389. feature.md5checksum,
  11390. feature.type_id,
  11391. feature.is_analysis,
  11392. feature.is_obsolete,
  11393. feature.timeaccessioned,
  11394. feature.timelastmodified
  11395. FROM (feature
  11396. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11397. WHERE ((cvterm.name)::text = 'common_variant'::text);
  11398. --
  11399. -- Name: compensatory_transcript_secondary_structure_variant; Type: VIEW; Schema: so; Owner: -
  11400. --
  11401. CREATE VIEW compensatory_transcript_secondary_structure_variant AS
  11402. SELECT feature.feature_id AS compensatory_transcript_secondary_structure_variant_id,
  11403. feature.feature_id,
  11404. feature.dbxref_id,
  11405. feature.organism_id,
  11406. feature.name,
  11407. feature.uniquename,
  11408. feature.residues,
  11409. feature.seqlen,
  11410. feature.md5checksum,
  11411. feature.type_id,
  11412. feature.is_analysis,
  11413. feature.is_obsolete,
  11414. feature.timeaccessioned,
  11415. feature.timelastmodified
  11416. FROM (feature
  11417. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11418. WHERE ((cvterm.name)::text = 'compensatory_transcript_secondary_structure_variant'::text);
  11419. --
  11420. -- Name: complex_3d_structural_variant; Type: VIEW; Schema: so; Owner: -
  11421. --
  11422. CREATE VIEW complex_3d_structural_variant AS
  11423. SELECT feature.feature_id AS complex_3d_structural_variant_id,
  11424. feature.feature_id,
  11425. feature.dbxref_id,
  11426. feature.organism_id,
  11427. feature.name,
  11428. feature.uniquename,
  11429. feature.residues,
  11430. feature.seqlen,
  11431. feature.md5checksum,
  11432. feature.type_id,
  11433. feature.is_analysis,
  11434. feature.is_obsolete,
  11435. feature.timeaccessioned,
  11436. feature.timelastmodified
  11437. FROM (feature
  11438. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11439. WHERE ((cvterm.name)::text = 'complex_3D_structural_variant'::text);
  11440. --
  11441. -- Name: complex_change_in_transcript; Type: VIEW; Schema: so; Owner: -
  11442. --
  11443. CREATE VIEW complex_change_in_transcript AS
  11444. SELECT feature.feature_id AS complex_change_in_transcript_id,
  11445. feature.feature_id,
  11446. feature.dbxref_id,
  11447. feature.organism_id,
  11448. feature.name,
  11449. feature.uniquename,
  11450. feature.residues,
  11451. feature.seqlen,
  11452. feature.md5checksum,
  11453. feature.type_id,
  11454. feature.is_analysis,
  11455. feature.is_obsolete,
  11456. feature.timeaccessioned,
  11457. feature.timelastmodified
  11458. FROM (feature
  11459. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11460. WHERE ((cvterm.name)::text = 'complex_change_in_transcript'::text);
  11461. --
  11462. -- Name: complex_change_of_translational_product_variant; Type: VIEW; Schema: so; Owner: -
  11463. --
  11464. CREATE VIEW complex_change_of_translational_product_variant AS
  11465. SELECT feature.feature_id AS complex_change_of_translational_product_variant_id,
  11466. feature.feature_id,
  11467. feature.dbxref_id,
  11468. feature.organism_id,
  11469. feature.name,
  11470. feature.uniquename,
  11471. feature.residues,
  11472. feature.seqlen,
  11473. feature.md5checksum,
  11474. feature.type_id,
  11475. feature.is_analysis,
  11476. feature.is_obsolete,
  11477. feature.timeaccessioned,
  11478. feature.timelastmodified
  11479. FROM (feature
  11480. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11481. WHERE ((cvterm.name)::text = 'complex_change_of_translational_product_variant'::text);
  11482. --
  11483. -- Name: complex_chromosomal_mutation; Type: VIEW; Schema: so; Owner: -
  11484. --
  11485. CREATE VIEW complex_chromosomal_mutation AS
  11486. SELECT feature.feature_id AS complex_chromosomal_mutation_id,
  11487. feature.feature_id,
  11488. feature.dbxref_id,
  11489. feature.organism_id,
  11490. feature.name,
  11491. feature.uniquename,
  11492. feature.residues,
  11493. feature.seqlen,
  11494. feature.md5checksum,
  11495. feature.type_id,
  11496. feature.is_analysis,
  11497. feature.is_obsolete,
  11498. feature.timeaccessioned,
  11499. feature.timelastmodified
  11500. FROM (feature
  11501. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11502. WHERE ((cvterm.name)::text = 'complex_chromosomal_mutation'::text);
  11503. --
  11504. -- Name: complex_structural_alteration; Type: VIEW; Schema: so; Owner: -
  11505. --
  11506. CREATE VIEW complex_structural_alteration AS
  11507. SELECT feature.feature_id AS complex_structural_alteration_id,
  11508. feature.feature_id,
  11509. feature.dbxref_id,
  11510. feature.organism_id,
  11511. feature.name,
  11512. feature.uniquename,
  11513. feature.residues,
  11514. feature.seqlen,
  11515. feature.md5checksum,
  11516. feature.type_id,
  11517. feature.is_analysis,
  11518. feature.is_obsolete,
  11519. feature.timeaccessioned,
  11520. feature.timelastmodified
  11521. FROM (feature
  11522. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11523. WHERE ((cvterm.name)::text = 'complex_structural_alteration'::text);
  11524. --
  11525. -- Name: complex_substitution; Type: VIEW; Schema: so; Owner: -
  11526. --
  11527. CREATE VIEW complex_substitution AS
  11528. SELECT feature.feature_id AS complex_substitution_id,
  11529. feature.feature_id,
  11530. feature.dbxref_id,
  11531. feature.organism_id,
  11532. feature.name,
  11533. feature.uniquename,
  11534. feature.residues,
  11535. feature.seqlen,
  11536. feature.md5checksum,
  11537. feature.type_id,
  11538. feature.is_analysis,
  11539. feature.is_obsolete,
  11540. feature.timeaccessioned,
  11541. feature.timelastmodified
  11542. FROM (feature
  11543. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11544. WHERE ((cvterm.name)::text = 'complex_substitution'::text);
  11545. --
  11546. -- Name: compositionally_biased_region_of_peptide; Type: VIEW; Schema: so; Owner: -
  11547. --
  11548. CREATE VIEW compositionally_biased_region_of_peptide AS
  11549. SELECT feature.feature_id AS compositionally_biased_region_of_peptide_id,
  11550. feature.feature_id,
  11551. feature.dbxref_id,
  11552. feature.organism_id,
  11553. feature.name,
  11554. feature.uniquename,
  11555. feature.residues,
  11556. feature.seqlen,
  11557. feature.md5checksum,
  11558. feature.type_id,
  11559. feature.is_analysis,
  11560. feature.is_obsolete,
  11561. feature.timeaccessioned,
  11562. feature.timelastmodified
  11563. FROM (feature
  11564. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11565. WHERE ((cvterm.name)::text = 'compositionally_biased_region_of_peptide'::text);
  11566. --
  11567. -- Name: compound_chromosome; Type: VIEW; Schema: so; Owner: -
  11568. --
  11569. CREATE VIEW compound_chromosome AS
  11570. SELECT feature.feature_id AS compound_chromosome_id,
  11571. feature.feature_id,
  11572. feature.dbxref_id,
  11573. feature.organism_id,
  11574. feature.name,
  11575. feature.uniquename,
  11576. feature.residues,
  11577. feature.seqlen,
  11578. feature.md5checksum,
  11579. feature.type_id,
  11580. feature.is_analysis,
  11581. feature.is_obsolete,
  11582. feature.timeaccessioned,
  11583. feature.timelastmodified
  11584. FROM (feature
  11585. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11586. WHERE (((((cvterm.name)::text = 'compound_chromosome_arm'::text) OR ((cvterm.name)::text = 'homo_compound_chromosome'::text)) OR ((cvterm.name)::text = 'hetero_compound_chromosome'::text)) OR ((cvterm.name)::text = 'compound_chromosome'::text));
  11587. --
  11588. -- Name: compound_chromosome_arm; Type: VIEW; Schema: so; Owner: -
  11589. --
  11590. CREATE VIEW compound_chromosome_arm AS
  11591. SELECT feature.feature_id AS compound_chromosome_arm_id,
  11592. feature.feature_id,
  11593. feature.dbxref_id,
  11594. feature.organism_id,
  11595. feature.name,
  11596. feature.uniquename,
  11597. feature.residues,
  11598. feature.seqlen,
  11599. feature.md5checksum,
  11600. feature.type_id,
  11601. feature.is_analysis,
  11602. feature.is_obsolete,
  11603. feature.timeaccessioned,
  11604. feature.timelastmodified
  11605. FROM (feature
  11606. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11607. WHERE ((cvterm.name)::text = 'compound_chromosome_arm'::text);
  11608. --
  11609. -- Name: conformational_change_variant; Type: VIEW; Schema: so; Owner: -
  11610. --
  11611. CREATE VIEW conformational_change_variant AS
  11612. SELECT feature.feature_id AS conformational_change_variant_id,
  11613. feature.feature_id,
  11614. feature.dbxref_id,
  11615. feature.organism_id,
  11616. feature.name,
  11617. feature.uniquename,
  11618. feature.residues,
  11619. feature.seqlen,
  11620. feature.md5checksum,
  11621. feature.type_id,
  11622. feature.is_analysis,
  11623. feature.is_obsolete,
  11624. feature.timeaccessioned,
  11625. feature.timelastmodified
  11626. FROM (feature
  11627. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11628. WHERE ((cvterm.name)::text = 'conformational_change_variant'::text);
  11629. --
  11630. -- Name: conformational_switch; Type: VIEW; Schema: so; Owner: -
  11631. --
  11632. CREATE VIEW conformational_switch AS
  11633. SELECT feature.feature_id AS conformational_switch_id,
  11634. feature.feature_id,
  11635. feature.dbxref_id,
  11636. feature.organism_id,
  11637. feature.name,
  11638. feature.uniquename,
  11639. feature.residues,
  11640. feature.seqlen,
  11641. feature.md5checksum,
  11642. feature.type_id,
  11643. feature.is_analysis,
  11644. feature.is_obsolete,
  11645. feature.timeaccessioned,
  11646. feature.timelastmodified
  11647. FROM (feature
  11648. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11649. WHERE ((cvterm.name)::text = 'conformational_switch'::text);
  11650. --
  11651. -- Name: conjugative_transposon; Type: VIEW; Schema: so; Owner: -
  11652. --
  11653. CREATE VIEW conjugative_transposon AS
  11654. SELECT feature.feature_id AS conjugative_transposon_id,
  11655. feature.feature_id,
  11656. feature.dbxref_id,
  11657. feature.organism_id,
  11658. feature.name,
  11659. feature.uniquename,
  11660. feature.residues,
  11661. feature.seqlen,
  11662. feature.md5checksum,
  11663. feature.type_id,
  11664. feature.is_analysis,
  11665. feature.is_obsolete,
  11666. feature.timeaccessioned,
  11667. feature.timelastmodified
  11668. FROM (feature
  11669. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11670. WHERE ((cvterm.name)::text = 'conjugative_transposon'::text);
  11671. --
  11672. -- Name: consensus; Type: VIEW; Schema: so; Owner: -
  11673. --
  11674. CREATE VIEW consensus AS
  11675. SELECT feature.feature_id AS consensus_id,
  11676. feature.feature_id,
  11677. feature.dbxref_id,
  11678. feature.organism_id,
  11679. feature.name,
  11680. feature.uniquename,
  11681. feature.residues,
  11682. feature.seqlen,
  11683. feature.md5checksum,
  11684. feature.type_id,
  11685. feature.is_analysis,
  11686. feature.is_obsolete,
  11687. feature.timeaccessioned,
  11688. feature.timelastmodified
  11689. FROM (feature
  11690. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11691. WHERE ((cvterm.name)::text = 'consensus'::text);
  11692. --
  11693. -- Name: consensus_mrna; Type: VIEW; Schema: so; Owner: -
  11694. --
  11695. CREATE VIEW consensus_mrna AS
  11696. SELECT feature.feature_id AS consensus_mrna_id,
  11697. feature.feature_id,
  11698. feature.dbxref_id,
  11699. feature.organism_id,
  11700. feature.name,
  11701. feature.uniquename,
  11702. feature.residues,
  11703. feature.seqlen,
  11704. feature.md5checksum,
  11705. feature.type_id,
  11706. feature.is_analysis,
  11707. feature.is_obsolete,
  11708. feature.timeaccessioned,
  11709. feature.timelastmodified
  11710. FROM (feature
  11711. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11712. WHERE ((cvterm.name)::text = 'consensus_mRNA'::text);
  11713. --
  11714. -- Name: consensus_region; Type: VIEW; Schema: so; Owner: -
  11715. --
  11716. CREATE VIEW consensus_region AS
  11717. SELECT feature.feature_id AS consensus_region_id,
  11718. feature.feature_id,
  11719. feature.dbxref_id,
  11720. feature.organism_id,
  11721. feature.name,
  11722. feature.uniquename,
  11723. feature.residues,
  11724. feature.seqlen,
  11725. feature.md5checksum,
  11726. feature.type_id,
  11727. feature.is_analysis,
  11728. feature.is_obsolete,
  11729. feature.timeaccessioned,
  11730. feature.timelastmodified
  11731. FROM (feature
  11732. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11733. WHERE (((cvterm.name)::text = 'consensus_mRNA'::text) OR ((cvterm.name)::text = 'consensus_region'::text));
  11734. --
  11735. -- Name: conservative_amino_acid_substitution; Type: VIEW; Schema: so; Owner: -
  11736. --
  11737. CREATE VIEW conservative_amino_acid_substitution AS
  11738. SELECT feature.feature_id AS conservative_amino_acid_substitution_id,
  11739. feature.feature_id,
  11740. feature.dbxref_id,
  11741. feature.organism_id,
  11742. feature.name,
  11743. feature.uniquename,
  11744. feature.residues,
  11745. feature.seqlen,
  11746. feature.md5checksum,
  11747. feature.type_id,
  11748. feature.is_analysis,
  11749. feature.is_obsolete,
  11750. feature.timeaccessioned,
  11751. feature.timelastmodified
  11752. FROM (feature
  11753. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11754. WHERE ((cvterm.name)::text = 'conservative_amino_acid_substitution'::text);
  11755. --
  11756. -- Name: conservative_missense_codon; Type: VIEW; Schema: so; Owner: -
  11757. --
  11758. CREATE VIEW conservative_missense_codon AS
  11759. SELECT feature.feature_id AS conservative_missense_codon_id,
  11760. feature.feature_id,
  11761. feature.dbxref_id,
  11762. feature.organism_id,
  11763. feature.name,
  11764. feature.uniquename,
  11765. feature.residues,
  11766. feature.seqlen,
  11767. feature.md5checksum,
  11768. feature.type_id,
  11769. feature.is_analysis,
  11770. feature.is_obsolete,
  11771. feature.timeaccessioned,
  11772. feature.timelastmodified
  11773. FROM (feature
  11774. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11775. WHERE ((cvterm.name)::text = 'conservative_missense_codon'::text);
  11776. --
  11777. -- Name: conserved; Type: VIEW; Schema: so; Owner: -
  11778. --
  11779. CREATE VIEW conserved AS
  11780. SELECT feature.feature_id AS conserved_id,
  11781. feature.feature_id,
  11782. feature.dbxref_id,
  11783. feature.organism_id,
  11784. feature.name,
  11785. feature.uniquename,
  11786. feature.residues,
  11787. feature.seqlen,
  11788. feature.md5checksum,
  11789. feature.type_id,
  11790. feature.is_analysis,
  11791. feature.is_obsolete,
  11792. feature.timeaccessioned,
  11793. feature.timelastmodified
  11794. FROM (feature
  11795. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11796. WHERE ((((((cvterm.name)::text = 'homologous'::text) OR ((cvterm.name)::text = 'syntenic'::text)) OR ((cvterm.name)::text = 'orthologous'::text)) OR ((cvterm.name)::text = 'paralogous'::text)) OR ((cvterm.name)::text = 'conserved'::text));
  11797. --
  11798. -- Name: conserved_region; Type: VIEW; Schema: so; Owner: -
  11799. --
  11800. CREATE VIEW conserved_region AS
  11801. SELECT feature.feature_id AS conserved_region_id,
  11802. feature.feature_id,
  11803. feature.dbxref_id,
  11804. feature.organism_id,
  11805. feature.name,
  11806. feature.uniquename,
  11807. feature.residues,
  11808. feature.seqlen,
  11809. feature.md5checksum,
  11810. feature.type_id,
  11811. feature.is_analysis,
  11812. feature.is_obsolete,
  11813. feature.timeaccessioned,
  11814. feature.timelastmodified
  11815. FROM (feature
  11816. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11817. WHERE (((((((((((((((cvterm.name)::text = 'coding_conserved_region'::text) OR ((cvterm.name)::text = 'nc_conserved_region'::text)) OR ((cvterm.name)::text = 'RR_tract'::text)) OR ((cvterm.name)::text = 'homologous_region'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_I'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_II'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_III'::text)) OR ((cvterm.name)::text = 'X_element'::text)) OR ((cvterm.name)::text = 'U_box'::text)) OR ((cvterm.name)::text = 'regional_centromere_central_core'::text)) OR ((cvterm.name)::text = 'syntenic_region'::text)) OR ((cvterm.name)::text = 'paralogous_region'::text)) OR ((cvterm.name)::text = 'orthologous_region'::text)) OR ((cvterm.name)::text = 'conserved_region'::text));
  11818. --
  11819. -- Name: contig; Type: VIEW; Schema: so; Owner: -
  11820. --
  11821. CREATE VIEW contig AS
  11822. SELECT feature.feature_id AS contig_id,
  11823. feature.feature_id,
  11824. feature.dbxref_id,
  11825. feature.organism_id,
  11826. feature.name,
  11827. feature.uniquename,
  11828. feature.residues,
  11829. feature.seqlen,
  11830. feature.md5checksum,
  11831. feature.type_id,
  11832. feature.is_analysis,
  11833. feature.is_obsolete,
  11834. feature.timeaccessioned,
  11835. feature.timelastmodified
  11836. FROM (feature
  11837. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11838. WHERE ((cvterm.name)::text = 'contig'::text);
  11839. --
  11840. -- Name: contig_collection; Type: VIEW; Schema: so; Owner: -
  11841. --
  11842. CREATE VIEW contig_collection AS
  11843. SELECT feature.feature_id AS contig_collection_id,
  11844. feature.feature_id,
  11845. feature.dbxref_id,
  11846. feature.organism_id,
  11847. feature.name,
  11848. feature.uniquename,
  11849. feature.residues,
  11850. feature.seqlen,
  11851. feature.md5checksum,
  11852. feature.type_id,
  11853. feature.is_analysis,
  11854. feature.is_obsolete,
  11855. feature.timeaccessioned,
  11856. feature.timelastmodified
  11857. FROM (feature
  11858. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11859. WHERE ((cvterm.name)::text = 'contig_collection'::text);
  11860. --
  11861. -- Name: contig_read; Type: VIEW; Schema: so; Owner: -
  11862. --
  11863. CREATE VIEW contig_read AS
  11864. SELECT feature.feature_id AS contig_read_id,
  11865. feature.feature_id,
  11866. feature.dbxref_id,
  11867. feature.organism_id,
  11868. feature.name,
  11869. feature.uniquename,
  11870. feature.residues,
  11871. feature.seqlen,
  11872. feature.md5checksum,
  11873. feature.type_id,
  11874. feature.is_analysis,
  11875. feature.is_obsolete,
  11876. feature.timeaccessioned,
  11877. feature.timelastmodified
  11878. FROM (feature
  11879. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11880. WHERE ((cvterm.name)::text = 'contig_read'::text);
  11881. --
  11882. -- Name: copy_number_change; Type: VIEW; Schema: so; Owner: -
  11883. --
  11884. CREATE VIEW copy_number_change AS
  11885. SELECT feature.feature_id AS copy_number_change_id,
  11886. feature.feature_id,
  11887. feature.dbxref_id,
  11888. feature.organism_id,
  11889. feature.name,
  11890. feature.uniquename,
  11891. feature.residues,
  11892. feature.seqlen,
  11893. feature.md5checksum,
  11894. feature.type_id,
  11895. feature.is_analysis,
  11896. feature.is_obsolete,
  11897. feature.timeaccessioned,
  11898. feature.timelastmodified
  11899. FROM (feature
  11900. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11901. WHERE ((cvterm.name)::text = 'copy_number_change'::text);
  11902. --
  11903. -- Name: copy_number_gain; Type: VIEW; Schema: so; Owner: -
  11904. --
  11905. CREATE VIEW copy_number_gain AS
  11906. SELECT feature.feature_id AS copy_number_gain_id,
  11907. feature.feature_id,
  11908. feature.dbxref_id,
  11909. feature.organism_id,
  11910. feature.name,
  11911. feature.uniquename,
  11912. feature.residues,
  11913. feature.seqlen,
  11914. feature.md5checksum,
  11915. feature.type_id,
  11916. feature.is_analysis,
  11917. feature.is_obsolete,
  11918. feature.timeaccessioned,
  11919. feature.timelastmodified
  11920. FROM (feature
  11921. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11922. WHERE ((cvterm.name)::text = 'copy_number_gain'::text);
  11923. --
  11924. -- Name: copy_number_loss; Type: VIEW; Schema: so; Owner: -
  11925. --
  11926. CREATE VIEW copy_number_loss AS
  11927. SELECT feature.feature_id AS copy_number_loss_id,
  11928. feature.feature_id,
  11929. feature.dbxref_id,
  11930. feature.organism_id,
  11931. feature.name,
  11932. feature.uniquename,
  11933. feature.residues,
  11934. feature.seqlen,
  11935. feature.md5checksum,
  11936. feature.type_id,
  11937. feature.is_analysis,
  11938. feature.is_obsolete,
  11939. feature.timeaccessioned,
  11940. feature.timelastmodified
  11941. FROM (feature
  11942. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11943. WHERE ((cvterm.name)::text = 'copy_number_loss'::text);
  11944. --
  11945. -- Name: copy_number_variation; Type: VIEW; Schema: so; Owner: -
  11946. --
  11947. CREATE VIEW copy_number_variation AS
  11948. SELECT feature.feature_id AS copy_number_variation_id,
  11949. feature.feature_id,
  11950. feature.dbxref_id,
  11951. feature.organism_id,
  11952. feature.name,
  11953. feature.uniquename,
  11954. feature.residues,
  11955. feature.seqlen,
  11956. feature.md5checksum,
  11957. feature.type_id,
  11958. feature.is_analysis,
  11959. feature.is_obsolete,
  11960. feature.timeaccessioned,
  11961. feature.timelastmodified
  11962. FROM (feature
  11963. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11964. WHERE ((((cvterm.name)::text = 'copy_number_gain'::text) OR ((cvterm.name)::text = 'copy_number_loss'::text)) OR ((cvterm.name)::text = 'copy_number_variation'::text));
  11965. --
  11966. -- Name: core_promoter_element; Type: VIEW; Schema: so; Owner: -
  11967. --
  11968. CREATE VIEW core_promoter_element AS
  11969. SELECT feature.feature_id AS core_promoter_element_id,
  11970. feature.feature_id,
  11971. feature.dbxref_id,
  11972. feature.organism_id,
  11973. feature.name,
  11974. feature.uniquename,
  11975. feature.residues,
  11976. feature.seqlen,
  11977. feature.md5checksum,
  11978. feature.type_id,
  11979. feature.is_analysis,
  11980. feature.is_obsolete,
  11981. feature.timeaccessioned,
  11982. feature.timelastmodified
  11983. FROM (feature
  11984. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  11985. WHERE (((((((((((((((((cvterm.name)::text = 'INR_motif'::text) OR ((cvterm.name)::text = 'DPE_motif'::text)) OR ((cvterm.name)::text = 'BREu_motif'::text)) OR ((cvterm.name)::text = 'TATA_box'::text)) OR ((cvterm.name)::text = 'A_box'::text)) OR ((cvterm.name)::text = 'B_box'::text)) OR ((cvterm.name)::text = 'C_box'::text)) OR ((cvterm.name)::text = 'MTE'::text)) OR ((cvterm.name)::text = 'BREd_motif'::text)) OR ((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'core_promoter_element'::text));
  11986. --
  11987. -- Name: cosmid; Type: VIEW; Schema: so; Owner: -
  11988. --
  11989. CREATE VIEW cosmid AS
  11990. SELECT feature.feature_id AS cosmid_id,
  11991. feature.feature_id,
  11992. feature.dbxref_id,
  11993. feature.organism_id,
  11994. feature.name,
  11995. feature.uniquename,
  11996. feature.residues,
  11997. feature.seqlen,
  11998. feature.md5checksum,
  11999. feature.type_id,
  12000. feature.is_analysis,
  12001. feature.is_obsolete,
  12002. feature.timeaccessioned,
  12003. feature.timelastmodified
  12004. FROM (feature
  12005. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12006. WHERE ((cvterm.name)::text = 'cosmid'::text);
  12007. --
  12008. -- Name: cpg_island; Type: VIEW; Schema: so; Owner: -
  12009. --
  12010. CREATE VIEW cpg_island AS
  12011. SELECT feature.feature_id AS cpg_island_id,
  12012. feature.feature_id,
  12013. feature.dbxref_id,
  12014. feature.organism_id,
  12015. feature.name,
  12016. feature.uniquename,
  12017. feature.residues,
  12018. feature.seqlen,
  12019. feature.md5checksum,
  12020. feature.type_id,
  12021. feature.is_analysis,
  12022. feature.is_obsolete,
  12023. feature.timeaccessioned,
  12024. feature.timelastmodified
  12025. FROM (feature
  12026. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12027. WHERE ((cvterm.name)::text = 'CpG_island'::text);
  12028. --
  12029. -- Name: crispr; Type: VIEW; Schema: so; Owner: -
  12030. --
  12031. CREATE VIEW crispr AS
  12032. SELECT feature.feature_id AS crispr_id,
  12033. feature.feature_id,
  12034. feature.dbxref_id,
  12035. feature.organism_id,
  12036. feature.name,
  12037. feature.uniquename,
  12038. feature.residues,
  12039. feature.seqlen,
  12040. feature.md5checksum,
  12041. feature.type_id,
  12042. feature.is_analysis,
  12043. feature.is_obsolete,
  12044. feature.timeaccessioned,
  12045. feature.timelastmodified
  12046. FROM (feature
  12047. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12048. WHERE ((cvterm.name)::text = 'CRISPR'::text);
  12049. --
  12050. -- Name: crm; Type: VIEW; Schema: so; Owner: -
  12051. --
  12052. CREATE VIEW crm AS
  12053. SELECT feature.feature_id AS crm_id,
  12054. feature.feature_id,
  12055. feature.dbxref_id,
  12056. feature.organism_id,
  12057. feature.name,
  12058. feature.uniquename,
  12059. feature.residues,
  12060. feature.seqlen,
  12061. feature.md5checksum,
  12062. feature.type_id,
  12063. feature.is_analysis,
  12064. feature.is_obsolete,
  12065. feature.timeaccessioned,
  12066. feature.timelastmodified
  12067. FROM (feature
  12068. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12069. WHERE (((((((cvterm.name)::text = 'locus_control_region'::text) OR ((cvterm.name)::text = 'enhancer'::text)) OR ((cvterm.name)::text = 'silencer'::text)) OR ((cvterm.name)::text = 'enhancer_bound_by_factor'::text)) OR ((cvterm.name)::text = 'shadow_enhancer'::text)) OR ((cvterm.name)::text = 'CRM'::text));
  12070. --
  12071. -- Name: cross_genome_match; Type: VIEW; Schema: so; Owner: -
  12072. --
  12073. CREATE VIEW cross_genome_match AS
  12074. SELECT feature.feature_id AS cross_genome_match_id,
  12075. feature.feature_id,
  12076. feature.dbxref_id,
  12077. feature.organism_id,
  12078. feature.name,
  12079. feature.uniquename,
  12080. feature.residues,
  12081. feature.seqlen,
  12082. feature.md5checksum,
  12083. feature.type_id,
  12084. feature.is_analysis,
  12085. feature.is_obsolete,
  12086. feature.timeaccessioned,
  12087. feature.timelastmodified
  12088. FROM (feature
  12089. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12090. WHERE ((cvterm.name)::text = 'cross_genome_match'::text);
  12091. --
  12092. -- Name: cryptic; Type: VIEW; Schema: so; Owner: -
  12093. --
  12094. CREATE VIEW cryptic AS
  12095. SELECT feature.feature_id AS cryptic_id,
  12096. feature.feature_id,
  12097. feature.dbxref_id,
  12098. feature.organism_id,
  12099. feature.name,
  12100. feature.uniquename,
  12101. feature.residues,
  12102. feature.seqlen,
  12103. feature.md5checksum,
  12104. feature.type_id,
  12105. feature.is_analysis,
  12106. feature.is_obsolete,
  12107. feature.timeaccessioned,
  12108. feature.timelastmodified
  12109. FROM (feature
  12110. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12111. WHERE ((cvterm.name)::text = 'cryptic'::text);
  12112. --
  12113. -- Name: cryptic_gene; Type: VIEW; Schema: so; Owner: -
  12114. --
  12115. CREATE VIEW cryptic_gene AS
  12116. SELECT feature.feature_id AS cryptic_gene_id,
  12117. feature.feature_id,
  12118. feature.dbxref_id,
  12119. feature.organism_id,
  12120. feature.name,
  12121. feature.uniquename,
  12122. feature.residues,
  12123. feature.seqlen,
  12124. feature.md5checksum,
  12125. feature.type_id,
  12126. feature.is_analysis,
  12127. feature.is_obsolete,
  12128. feature.timeaccessioned,
  12129. feature.timelastmodified
  12130. FROM (feature
  12131. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12132. WHERE (((cvterm.name)::text = 'cryptogene'::text) OR ((cvterm.name)::text = 'cryptic_gene'::text));
  12133. --
  12134. -- Name: cryptic_prophage; Type: VIEW; Schema: so; Owner: -
  12135. --
  12136. CREATE VIEW cryptic_prophage AS
  12137. SELECT feature.feature_id AS cryptic_prophage_id,
  12138. feature.feature_id,
  12139. feature.dbxref_id,
  12140. feature.organism_id,
  12141. feature.name,
  12142. feature.uniquename,
  12143. feature.residues,
  12144. feature.seqlen,
  12145. feature.md5checksum,
  12146. feature.type_id,
  12147. feature.is_analysis,
  12148. feature.is_obsolete,
  12149. feature.timeaccessioned,
  12150. feature.timelastmodified
  12151. FROM (feature
  12152. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12153. WHERE ((cvterm.name)::text = 'cryptic_prophage'::text);
  12154. --
  12155. -- Name: cryptic_splice_acceptor; Type: VIEW; Schema: so; Owner: -
  12156. --
  12157. CREATE VIEW cryptic_splice_acceptor AS
  12158. SELECT feature.feature_id AS cryptic_splice_acceptor_id,
  12159. feature.feature_id,
  12160. feature.dbxref_id,
  12161. feature.organism_id,
  12162. feature.name,
  12163. feature.uniquename,
  12164. feature.residues,
  12165. feature.seqlen,
  12166. feature.md5checksum,
  12167. feature.type_id,
  12168. feature.is_analysis,
  12169. feature.is_obsolete,
  12170. feature.timeaccessioned,
  12171. feature.timelastmodified
  12172. FROM (feature
  12173. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12174. WHERE ((cvterm.name)::text = 'cryptic_splice_acceptor'::text);
  12175. --
  12176. -- Name: cryptic_splice_donor; Type: VIEW; Schema: so; Owner: -
  12177. --
  12178. CREATE VIEW cryptic_splice_donor AS
  12179. SELECT feature.feature_id AS cryptic_splice_donor_id,
  12180. feature.feature_id,
  12181. feature.dbxref_id,
  12182. feature.organism_id,
  12183. feature.name,
  12184. feature.uniquename,
  12185. feature.residues,
  12186. feature.seqlen,
  12187. feature.md5checksum,
  12188. feature.type_id,
  12189. feature.is_analysis,
  12190. feature.is_obsolete,
  12191. feature.timeaccessioned,
  12192. feature.timelastmodified
  12193. FROM (feature
  12194. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12195. WHERE ((cvterm.name)::text = 'cryptic_splice_donor'::text);
  12196. --
  12197. -- Name: cryptic_splice_site; Type: VIEW; Schema: so; Owner: -
  12198. --
  12199. CREATE VIEW cryptic_splice_site AS
  12200. SELECT feature.feature_id AS cryptic_splice_site_id,
  12201. feature.feature_id,
  12202. feature.dbxref_id,
  12203. feature.organism_id,
  12204. feature.name,
  12205. feature.uniquename,
  12206. feature.residues,
  12207. feature.seqlen,
  12208. feature.md5checksum,
  12209. feature.type_id,
  12210. feature.is_analysis,
  12211. feature.is_obsolete,
  12212. feature.timeaccessioned,
  12213. feature.timelastmodified
  12214. FROM (feature
  12215. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12216. WHERE ((cvterm.name)::text = 'cryptic_splice_site'::text);
  12217. --
  12218. -- Name: cryptic_splice_site_variant; Type: VIEW; Schema: so; Owner: -
  12219. --
  12220. CREATE VIEW cryptic_splice_site_variant AS
  12221. SELECT feature.feature_id AS cryptic_splice_site_variant_id,
  12222. feature.feature_id,
  12223. feature.dbxref_id,
  12224. feature.organism_id,
  12225. feature.name,
  12226. feature.uniquename,
  12227. feature.residues,
  12228. feature.seqlen,
  12229. feature.md5checksum,
  12230. feature.type_id,
  12231. feature.is_analysis,
  12232. feature.is_obsolete,
  12233. feature.timeaccessioned,
  12234. feature.timelastmodified
  12235. FROM (feature
  12236. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12237. WHERE ((((cvterm.name)::text = 'cryptic_splice_acceptor'::text) OR ((cvterm.name)::text = 'cryptic_splice_donor'::text)) OR ((cvterm.name)::text = 'cryptic_splice_site_variant'::text));
  12238. --
  12239. -- Name: cryptogene; Type: VIEW; Schema: so; Owner: -
  12240. --
  12241. CREATE VIEW cryptogene AS
  12242. SELECT feature.feature_id AS cryptogene_id,
  12243. feature.feature_id,
  12244. feature.dbxref_id,
  12245. feature.organism_id,
  12246. feature.name,
  12247. feature.uniquename,
  12248. feature.residues,
  12249. feature.seqlen,
  12250. feature.md5checksum,
  12251. feature.type_id,
  12252. feature.is_analysis,
  12253. feature.is_obsolete,
  12254. feature.timeaccessioned,
  12255. feature.timelastmodified
  12256. FROM (feature
  12257. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12258. WHERE ((cvterm.name)::text = 'cryptogene'::text);
  12259. --
  12260. -- Name: csrb_rsmb_rna; Type: VIEW; Schema: so; Owner: -
  12261. --
  12262. CREATE VIEW csrb_rsmb_rna AS
  12263. SELECT feature.feature_id AS csrb_rsmb_rna_id,
  12264. feature.feature_id,
  12265. feature.dbxref_id,
  12266. feature.organism_id,
  12267. feature.name,
  12268. feature.uniquename,
  12269. feature.residues,
  12270. feature.seqlen,
  12271. feature.md5checksum,
  12272. feature.type_id,
  12273. feature.is_analysis,
  12274. feature.is_obsolete,
  12275. feature.timeaccessioned,
  12276. feature.timelastmodified
  12277. FROM (feature
  12278. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12279. WHERE ((cvterm.name)::text = 'CsrB_RsmB_RNA'::text);
  12280. --
  12281. -- Name: ct_gene; Type: VIEW; Schema: so; Owner: -
  12282. --
  12283. CREATE VIEW ct_gene AS
  12284. SELECT feature.feature_id AS ct_gene_id,
  12285. feature.feature_id,
  12286. feature.dbxref_id,
  12287. feature.organism_id,
  12288. feature.name,
  12289. feature.uniquename,
  12290. feature.residues,
  12291. feature.seqlen,
  12292. feature.md5checksum,
  12293. feature.type_id,
  12294. feature.is_analysis,
  12295. feature.is_obsolete,
  12296. feature.timeaccessioned,
  12297. feature.timelastmodified
  12298. FROM (feature
  12299. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12300. WHERE ((cvterm.name)::text = 'ct_gene'::text);
  12301. --
  12302. -- Name: ctg_start_codon; Type: VIEW; Schema: so; Owner: -
  12303. --
  12304. CREATE VIEW ctg_start_codon AS
  12305. SELECT feature.feature_id AS ctg_start_codon_id,
  12306. feature.feature_id,
  12307. feature.dbxref_id,
  12308. feature.organism_id,
  12309. feature.name,
  12310. feature.uniquename,
  12311. feature.residues,
  12312. feature.seqlen,
  12313. feature.md5checksum,
  12314. feature.type_id,
  12315. feature.is_analysis,
  12316. feature.is_obsolete,
  12317. feature.timeaccessioned,
  12318. feature.timelastmodified
  12319. FROM (feature
  12320. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12321. WHERE ((cvterm.name)::text = 'CTG_start_codon'::text);
  12322. --
  12323. -- Name: cyanelle_chromosome; Type: VIEW; Schema: so; Owner: -
  12324. --
  12325. CREATE VIEW cyanelle_chromosome AS
  12326. SELECT feature.feature_id AS cyanelle_chromosome_id,
  12327. feature.feature_id,
  12328. feature.dbxref_id,
  12329. feature.organism_id,
  12330. feature.name,
  12331. feature.uniquename,
  12332. feature.residues,
  12333. feature.seqlen,
  12334. feature.md5checksum,
  12335. feature.type_id,
  12336. feature.is_analysis,
  12337. feature.is_obsolete,
  12338. feature.timeaccessioned,
  12339. feature.timelastmodified
  12340. FROM (feature
  12341. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12342. WHERE ((cvterm.name)::text = 'cyanelle_chromosome'::text);
  12343. --
  12344. -- Name: cyanelle_gene; Type: VIEW; Schema: so; Owner: -
  12345. --
  12346. CREATE VIEW cyanelle_gene AS
  12347. SELECT feature.feature_id AS cyanelle_gene_id,
  12348. feature.feature_id,
  12349. feature.dbxref_id,
  12350. feature.organism_id,
  12351. feature.name,
  12352. feature.uniquename,
  12353. feature.residues,
  12354. feature.seqlen,
  12355. feature.md5checksum,
  12356. feature.type_id,
  12357. feature.is_analysis,
  12358. feature.is_obsolete,
  12359. feature.timeaccessioned,
  12360. feature.timelastmodified
  12361. FROM (feature
  12362. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12363. WHERE ((cvterm.name)::text = 'cyanelle_gene'::text);
  12364. --
  12365. -- Name: cyanelle_sequence; Type: VIEW; Schema: so; Owner: -
  12366. --
  12367. CREATE VIEW cyanelle_sequence AS
  12368. SELECT feature.feature_id AS cyanelle_sequence_id,
  12369. feature.feature_id,
  12370. feature.dbxref_id,
  12371. feature.organism_id,
  12372. feature.name,
  12373. feature.uniquename,
  12374. feature.residues,
  12375. feature.seqlen,
  12376. feature.md5checksum,
  12377. feature.type_id,
  12378. feature.is_analysis,
  12379. feature.is_obsolete,
  12380. feature.timeaccessioned,
  12381. feature.timelastmodified
  12382. FROM (feature
  12383. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12384. WHERE ((cvterm.name)::text = 'cyanelle_sequence'::text);
  12385. --
  12386. -- Name: cyclic_translocation; Type: VIEW; Schema: so; Owner: -
  12387. --
  12388. CREATE VIEW cyclic_translocation AS
  12389. SELECT feature.feature_id AS cyclic_translocation_id,
  12390. feature.feature_id,
  12391. feature.dbxref_id,
  12392. feature.organism_id,
  12393. feature.name,
  12394. feature.uniquename,
  12395. feature.residues,
  12396. feature.seqlen,
  12397. feature.md5checksum,
  12398. feature.type_id,
  12399. feature.is_analysis,
  12400. feature.is_obsolete,
  12401. feature.timeaccessioned,
  12402. feature.timelastmodified
  12403. FROM (feature
  12404. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12405. WHERE ((cvterm.name)::text = 'cyclic_translocation'::text);
  12406. --
  12407. -- Name: cysteine; Type: VIEW; Schema: so; Owner: -
  12408. --
  12409. CREATE VIEW cysteine AS
  12410. SELECT feature.feature_id AS cysteine_id,
  12411. feature.feature_id,
  12412. feature.dbxref_id,
  12413. feature.organism_id,
  12414. feature.name,
  12415. feature.uniquename,
  12416. feature.residues,
  12417. feature.seqlen,
  12418. feature.md5checksum,
  12419. feature.type_id,
  12420. feature.is_analysis,
  12421. feature.is_obsolete,
  12422. feature.timeaccessioned,
  12423. feature.timelastmodified
  12424. FROM (feature
  12425. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12426. WHERE ((cvterm.name)::text = 'cysteine'::text);
  12427. --
  12428. -- Name: cysteine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  12429. --
  12430. CREATE VIEW cysteine_trna_primary_transcript AS
  12431. SELECT feature.feature_id AS cysteine_trna_primary_transcript_id,
  12432. feature.feature_id,
  12433. feature.dbxref_id,
  12434. feature.organism_id,
  12435. feature.name,
  12436. feature.uniquename,
  12437. feature.residues,
  12438. feature.seqlen,
  12439. feature.md5checksum,
  12440. feature.type_id,
  12441. feature.is_analysis,
  12442. feature.is_obsolete,
  12443. feature.timeaccessioned,
  12444. feature.timelastmodified
  12445. FROM (feature
  12446. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12447. WHERE ((cvterm.name)::text = 'cysteine_tRNA_primary_transcript'::text);
  12448. --
  12449. -- Name: cysteinyl_trna; Type: VIEW; Schema: so; Owner: -
  12450. --
  12451. CREATE VIEW cysteinyl_trna AS
  12452. SELECT feature.feature_id AS cysteinyl_trna_id,
  12453. feature.feature_id,
  12454. feature.dbxref_id,
  12455. feature.organism_id,
  12456. feature.name,
  12457. feature.uniquename,
  12458. feature.residues,
  12459. feature.seqlen,
  12460. feature.md5checksum,
  12461. feature.type_id,
  12462. feature.is_analysis,
  12463. feature.is_obsolete,
  12464. feature.timeaccessioned,
  12465. feature.timelastmodified
  12466. FROM (feature
  12467. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12468. WHERE ((cvterm.name)::text = 'cysteinyl_tRNA'::text);
  12469. --
  12470. -- Name: cytoplasmic_polypeptide_region; Type: VIEW; Schema: so; Owner: -
  12471. --
  12472. CREATE VIEW cytoplasmic_polypeptide_region AS
  12473. SELECT feature.feature_id AS cytoplasmic_polypeptide_region_id,
  12474. feature.feature_id,
  12475. feature.dbxref_id,
  12476. feature.organism_id,
  12477. feature.name,
  12478. feature.uniquename,
  12479. feature.residues,
  12480. feature.seqlen,
  12481. feature.md5checksum,
  12482. feature.type_id,
  12483. feature.is_analysis,
  12484. feature.is_obsolete,
  12485. feature.timeaccessioned,
  12486. feature.timelastmodified
  12487. FROM (feature
  12488. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12489. WHERE ((cvterm.name)::text = 'cytoplasmic_polypeptide_region'::text);
  12490. --
  12491. -- Name: d_cluster; Type: VIEW; Schema: so; Owner: -
  12492. --
  12493. CREATE VIEW d_cluster AS
  12494. SELECT feature.feature_id AS d_cluster_id,
  12495. feature.feature_id,
  12496. feature.dbxref_id,
  12497. feature.organism_id,
  12498. feature.name,
  12499. feature.uniquename,
  12500. feature.residues,
  12501. feature.seqlen,
  12502. feature.md5checksum,
  12503. feature.type_id,
  12504. feature.is_analysis,
  12505. feature.is_obsolete,
  12506. feature.timeaccessioned,
  12507. feature.timelastmodified
  12508. FROM (feature
  12509. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12510. WHERE ((cvterm.name)::text = 'D_cluster'::text);
  12511. --
  12512. -- Name: d_dj_c_cluster; Type: VIEW; Schema: so; Owner: -
  12513. --
  12514. CREATE VIEW d_dj_c_cluster AS
  12515. SELECT feature.feature_id AS d_dj_c_cluster_id,
  12516. feature.feature_id,
  12517. feature.dbxref_id,
  12518. feature.organism_id,
  12519. feature.name,
  12520. feature.uniquename,
  12521. feature.residues,
  12522. feature.seqlen,
  12523. feature.md5checksum,
  12524. feature.type_id,
  12525. feature.is_analysis,
  12526. feature.is_obsolete,
  12527. feature.timeaccessioned,
  12528. feature.timelastmodified
  12529. FROM (feature
  12530. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12531. WHERE ((cvterm.name)::text = 'D_DJ_C_cluster'::text);
  12532. --
  12533. -- Name: d_dj_cluster; Type: VIEW; Schema: so; Owner: -
  12534. --
  12535. CREATE VIEW d_dj_cluster AS
  12536. SELECT feature.feature_id AS d_dj_cluster_id,
  12537. feature.feature_id,
  12538. feature.dbxref_id,
  12539. feature.organism_id,
  12540. feature.name,
  12541. feature.uniquename,
  12542. feature.residues,
  12543. feature.seqlen,
  12544. feature.md5checksum,
  12545. feature.type_id,
  12546. feature.is_analysis,
  12547. feature.is_obsolete,
  12548. feature.timeaccessioned,
  12549. feature.timelastmodified
  12550. FROM (feature
  12551. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12552. WHERE ((cvterm.name)::text = 'D_DJ_cluster'::text);
  12553. --
  12554. -- Name: d_dj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
  12555. --
  12556. CREATE VIEW d_dj_j_c_cluster AS
  12557. SELECT feature.feature_id AS d_dj_j_c_cluster_id,
  12558. feature.feature_id,
  12559. feature.dbxref_id,
  12560. feature.organism_id,
  12561. feature.name,
  12562. feature.uniquename,
  12563. feature.residues,
  12564. feature.seqlen,
  12565. feature.md5checksum,
  12566. feature.type_id,
  12567. feature.is_analysis,
  12568. feature.is_obsolete,
  12569. feature.timeaccessioned,
  12570. feature.timelastmodified
  12571. FROM (feature
  12572. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12573. WHERE ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text);
  12574. --
  12575. -- Name: d_dj_j_cluster; Type: VIEW; Schema: so; Owner: -
  12576. --
  12577. CREATE VIEW d_dj_j_cluster AS
  12578. SELECT feature.feature_id AS d_dj_j_cluster_id,
  12579. feature.feature_id,
  12580. feature.dbxref_id,
  12581. feature.organism_id,
  12582. feature.name,
  12583. feature.uniquename,
  12584. feature.residues,
  12585. feature.seqlen,
  12586. feature.md5checksum,
  12587. feature.type_id,
  12588. feature.is_analysis,
  12589. feature.is_obsolete,
  12590. feature.timeaccessioned,
  12591. feature.timelastmodified
  12592. FROM (feature
  12593. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12594. WHERE ((cvterm.name)::text = 'D_DJ_J_cluster'::text);
  12595. --
  12596. -- Name: d_gene; Type: VIEW; Schema: so; Owner: -
  12597. --
  12598. CREATE VIEW d_gene AS
  12599. SELECT feature.feature_id AS d_gene_id,
  12600. feature.feature_id,
  12601. feature.dbxref_id,
  12602. feature.organism_id,
  12603. feature.name,
  12604. feature.uniquename,
  12605. feature.residues,
  12606. feature.seqlen,
  12607. feature.md5checksum,
  12608. feature.type_id,
  12609. feature.is_analysis,
  12610. feature.is_obsolete,
  12611. feature.timeaccessioned,
  12612. feature.timelastmodified
  12613. FROM (feature
  12614. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12615. WHERE ((cvterm.name)::text = 'D_gene'::text);
  12616. --
  12617. -- Name: d_gene_recombination_feature; Type: VIEW; Schema: so; Owner: -
  12618. --
  12619. CREATE VIEW d_gene_recombination_feature AS
  12620. SELECT feature.feature_id AS d_gene_recombination_feature_id,
  12621. feature.feature_id,
  12622. feature.dbxref_id,
  12623. feature.organism_id,
  12624. feature.name,
  12625. feature.uniquename,
  12626. feature.residues,
  12627. feature.seqlen,
  12628. feature.md5checksum,
  12629. feature.type_id,
  12630. feature.is_analysis,
  12631. feature.is_obsolete,
  12632. feature.timeaccessioned,
  12633. feature.timelastmodified
  12634. FROM (feature
  12635. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12636. WHERE ((((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text));
  12637. --
  12638. -- Name: d_interchr_transposition; Type: VIEW; Schema: so; Owner: -
  12639. --
  12640. CREATE VIEW d_interchr_transposition AS
  12641. SELECT feature.feature_id AS d_interchr_transposition_id,
  12642. feature.feature_id,
  12643. feature.dbxref_id,
  12644. feature.organism_id,
  12645. feature.name,
  12646. feature.uniquename,
  12647. feature.residues,
  12648. feature.seqlen,
  12649. feature.md5checksum,
  12650. feature.type_id,
  12651. feature.is_analysis,
  12652. feature.is_obsolete,
  12653. feature.timeaccessioned,
  12654. feature.timelastmodified
  12655. FROM (feature
  12656. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12657. WHERE ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text);
  12658. --
  12659. -- Name: d_intrachr_transposition; Type: VIEW; Schema: so; Owner: -
  12660. --
  12661. CREATE VIEW d_intrachr_transposition AS
  12662. SELECT feature.feature_id AS d_intrachr_transposition_id,
  12663. feature.feature_id,
  12664. feature.dbxref_id,
  12665. feature.organism_id,
  12666. feature.name,
  12667. feature.uniquename,
  12668. feature.residues,
  12669. feature.seqlen,
  12670. feature.md5checksum,
  12671. feature.type_id,
  12672. feature.is_analysis,
  12673. feature.is_obsolete,
  12674. feature.timeaccessioned,
  12675. feature.timelastmodified
  12676. FROM (feature
  12677. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12678. WHERE ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text);
  12679. --
  12680. -- Name: d_j_c_cluster; Type: VIEW; Schema: so; Owner: -
  12681. --
  12682. CREATE VIEW d_j_c_cluster AS
  12683. SELECT feature.feature_id AS d_j_c_cluster_id,
  12684. feature.feature_id,
  12685. feature.dbxref_id,
  12686. feature.organism_id,
  12687. feature.name,
  12688. feature.uniquename,
  12689. feature.residues,
  12690. feature.seqlen,
  12691. feature.md5checksum,
  12692. feature.type_id,
  12693. feature.is_analysis,
  12694. feature.is_obsolete,
  12695. feature.timeaccessioned,
  12696. feature.timelastmodified
  12697. FROM (feature
  12698. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12699. WHERE ((cvterm.name)::text = 'D_J_C_cluster'::text);
  12700. --
  12701. -- Name: d_j_cluster; Type: VIEW; Schema: so; Owner: -
  12702. --
  12703. CREATE VIEW d_j_cluster AS
  12704. SELECT feature.feature_id AS d_j_cluster_id,
  12705. feature.feature_id,
  12706. feature.dbxref_id,
  12707. feature.organism_id,
  12708. feature.name,
  12709. feature.uniquename,
  12710. feature.residues,
  12711. feature.seqlen,
  12712. feature.md5checksum,
  12713. feature.type_id,
  12714. feature.is_analysis,
  12715. feature.is_obsolete,
  12716. feature.timeaccessioned,
  12717. feature.timelastmodified
  12718. FROM (feature
  12719. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12720. WHERE ((cvterm.name)::text = 'D_J_cluster'::text);
  12721. --
  12722. -- Name: d_loop; Type: VIEW; Schema: so; Owner: -
  12723. --
  12724. CREATE VIEW d_loop AS
  12725. SELECT feature.feature_id AS d_loop_id,
  12726. feature.feature_id,
  12727. feature.dbxref_id,
  12728. feature.organism_id,
  12729. feature.name,
  12730. feature.uniquename,
  12731. feature.residues,
  12732. feature.seqlen,
  12733. feature.md5checksum,
  12734. feature.type_id,
  12735. feature.is_analysis,
  12736. feature.is_obsolete,
  12737. feature.timeaccessioned,
  12738. feature.timelastmodified
  12739. FROM (feature
  12740. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12741. WHERE ((cvterm.name)::text = 'D_loop'::text);
  12742. --
  12743. -- Name: dart_marker; Type: VIEW; Schema: so; Owner: -
  12744. --
  12745. CREATE VIEW dart_marker AS
  12746. SELECT feature.feature_id AS dart_marker_id,
  12747. feature.feature_id,
  12748. feature.dbxref_id,
  12749. feature.organism_id,
  12750. feature.name,
  12751. feature.uniquename,
  12752. feature.residues,
  12753. feature.seqlen,
  12754. feature.md5checksum,
  12755. feature.type_id,
  12756. feature.is_analysis,
  12757. feature.is_obsolete,
  12758. feature.timeaccessioned,
  12759. feature.timelastmodified
  12760. FROM (feature
  12761. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12762. WHERE ((cvterm.name)::text = 'DArT_marker'::text);
  12763. --
  12764. -- Name: databank_entry; Type: VIEW; Schema: so; Owner: -
  12765. --
  12766. CREATE VIEW databank_entry AS
  12767. SELECT feature.feature_id AS databank_entry_id,
  12768. feature.feature_id,
  12769. feature.dbxref_id,
  12770. feature.organism_id,
  12771. feature.name,
  12772. feature.uniquename,
  12773. feature.residues,
  12774. feature.seqlen,
  12775. feature.md5checksum,
  12776. feature.type_id,
  12777. feature.is_analysis,
  12778. feature.is_obsolete,
  12779. feature.timeaccessioned,
  12780. feature.timelastmodified
  12781. FROM (feature
  12782. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12783. WHERE ((cvterm.name)::text = 'databank_entry'::text);
  12784. --
  12785. -- Name: dcaps_primer; Type: VIEW; Schema: so; Owner: -
  12786. --
  12787. CREATE VIEW dcaps_primer AS
  12788. SELECT feature.feature_id AS dcaps_primer_id,
  12789. feature.feature_id,
  12790. feature.dbxref_id,
  12791. feature.organism_id,
  12792. feature.name,
  12793. feature.uniquename,
  12794. feature.residues,
  12795. feature.seqlen,
  12796. feature.md5checksum,
  12797. feature.type_id,
  12798. feature.is_analysis,
  12799. feature.is_obsolete,
  12800. feature.timeaccessioned,
  12801. feature.timelastmodified
  12802. FROM (feature
  12803. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12804. WHERE ((cvterm.name)::text = 'dCAPS_primer'::text);
  12805. --
  12806. -- Name: dce; Type: VIEW; Schema: so; Owner: -
  12807. --
  12808. CREATE VIEW dce AS
  12809. SELECT feature.feature_id AS dce_id,
  12810. feature.feature_id,
  12811. feature.dbxref_id,
  12812. feature.organism_id,
  12813. feature.name,
  12814. feature.uniquename,
  12815. feature.residues,
  12816. feature.seqlen,
  12817. feature.md5checksum,
  12818. feature.type_id,
  12819. feature.is_analysis,
  12820. feature.is_obsolete,
  12821. feature.timeaccessioned,
  12822. feature.timelastmodified
  12823. FROM (feature
  12824. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12825. WHERE ((cvterm.name)::text = 'DCE'::text);
  12826. --
  12827. -- Name: dce_si; Type: VIEW; Schema: so; Owner: -
  12828. --
  12829. CREATE VIEW dce_si AS
  12830. SELECT feature.feature_id AS dce_si_id,
  12831. feature.feature_id,
  12832. feature.dbxref_id,
  12833. feature.organism_id,
  12834. feature.name,
  12835. feature.uniquename,
  12836. feature.residues,
  12837. feature.seqlen,
  12838. feature.md5checksum,
  12839. feature.type_id,
  12840. feature.is_analysis,
  12841. feature.is_obsolete,
  12842. feature.timeaccessioned,
  12843. feature.timelastmodified
  12844. FROM (feature
  12845. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12846. WHERE ((cvterm.name)::text = 'DCE_SI'::text);
  12847. --
  12848. -- Name: dce_sii; Type: VIEW; Schema: so; Owner: -
  12849. --
  12850. CREATE VIEW dce_sii AS
  12851. SELECT feature.feature_id AS dce_sii_id,
  12852. feature.feature_id,
  12853. feature.dbxref_id,
  12854. feature.organism_id,
  12855. feature.name,
  12856. feature.uniquename,
  12857. feature.residues,
  12858. feature.seqlen,
  12859. feature.md5checksum,
  12860. feature.type_id,
  12861. feature.is_analysis,
  12862. feature.is_obsolete,
  12863. feature.timeaccessioned,
  12864. feature.timelastmodified
  12865. FROM (feature
  12866. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12867. WHERE ((cvterm.name)::text = 'DCE_SII'::text);
  12868. --
  12869. -- Name: dce_siii; Type: VIEW; Schema: so; Owner: -
  12870. --
  12871. CREATE VIEW dce_siii AS
  12872. SELECT feature.feature_id AS dce_siii_id,
  12873. feature.feature_id,
  12874. feature.dbxref_id,
  12875. feature.organism_id,
  12876. feature.name,
  12877. feature.uniquename,
  12878. feature.residues,
  12879. feature.seqlen,
  12880. feature.md5checksum,
  12881. feature.type_id,
  12882. feature.is_analysis,
  12883. feature.is_obsolete,
  12884. feature.timeaccessioned,
  12885. feature.timelastmodified
  12886. FROM (feature
  12887. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12888. WHERE ((cvterm.name)::text = 'DCE_SIII'::text);
  12889. --
  12890. -- Name: de_novo_variant; Type: VIEW; Schema: so; Owner: -
  12891. --
  12892. CREATE VIEW de_novo_variant AS
  12893. SELECT feature.feature_id AS de_novo_variant_id,
  12894. feature.feature_id,
  12895. feature.dbxref_id,
  12896. feature.organism_id,
  12897. feature.name,
  12898. feature.uniquename,
  12899. feature.residues,
  12900. feature.seqlen,
  12901. feature.md5checksum,
  12902. feature.type_id,
  12903. feature.is_analysis,
  12904. feature.is_obsolete,
  12905. feature.timeaccessioned,
  12906. feature.timelastmodified
  12907. FROM (feature
  12908. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12909. WHERE ((cvterm.name)::text = 'de_novo_variant'::text);
  12910. --
  12911. -- Name: decayed_exon; Type: VIEW; Schema: so; Owner: -
  12912. --
  12913. CREATE VIEW decayed_exon AS
  12914. SELECT feature.feature_id AS decayed_exon_id,
  12915. feature.feature_id,
  12916. feature.dbxref_id,
  12917. feature.organism_id,
  12918. feature.name,
  12919. feature.uniquename,
  12920. feature.residues,
  12921. feature.seqlen,
  12922. feature.md5checksum,
  12923. feature.type_id,
  12924. feature.is_analysis,
  12925. feature.is_obsolete,
  12926. feature.timeaccessioned,
  12927. feature.timelastmodified
  12928. FROM (feature
  12929. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12930. WHERE ((cvterm.name)::text = 'decayed_exon'::text);
  12931. --
  12932. -- Name: decreased_polyadenylation_variant; Type: VIEW; Schema: so; Owner: -
  12933. --
  12934. CREATE VIEW decreased_polyadenylation_variant AS
  12935. SELECT feature.feature_id AS decreased_polyadenylation_variant_id,
  12936. feature.feature_id,
  12937. feature.dbxref_id,
  12938. feature.organism_id,
  12939. feature.name,
  12940. feature.uniquename,
  12941. feature.residues,
  12942. feature.seqlen,
  12943. feature.md5checksum,
  12944. feature.type_id,
  12945. feature.is_analysis,
  12946. feature.is_obsolete,
  12947. feature.timeaccessioned,
  12948. feature.timelastmodified
  12949. FROM (feature
  12950. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12951. WHERE ((cvterm.name)::text = 'decreased_polyadenylation_variant'::text);
  12952. --
  12953. -- Name: decreased_transcript_level_variant; Type: VIEW; Schema: so; Owner: -
  12954. --
  12955. CREATE VIEW decreased_transcript_level_variant AS
  12956. SELECT feature.feature_id AS decreased_transcript_level_variant_id,
  12957. feature.feature_id,
  12958. feature.dbxref_id,
  12959. feature.organism_id,
  12960. feature.name,
  12961. feature.uniquename,
  12962. feature.residues,
  12963. feature.seqlen,
  12964. feature.md5checksum,
  12965. feature.type_id,
  12966. feature.is_analysis,
  12967. feature.is_obsolete,
  12968. feature.timeaccessioned,
  12969. feature.timelastmodified
  12970. FROM (feature
  12971. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12972. WHERE ((cvterm.name)::text = 'decreased_transcript_level_variant'::text);
  12973. --
  12974. -- Name: decreased_transcript_stability_variant; Type: VIEW; Schema: so; Owner: -
  12975. --
  12976. CREATE VIEW decreased_transcript_stability_variant AS
  12977. SELECT feature.feature_id AS decreased_transcript_stability_variant_id,
  12978. feature.feature_id,
  12979. feature.dbxref_id,
  12980. feature.organism_id,
  12981. feature.name,
  12982. feature.uniquename,
  12983. feature.residues,
  12984. feature.seqlen,
  12985. feature.md5checksum,
  12986. feature.type_id,
  12987. feature.is_analysis,
  12988. feature.is_obsolete,
  12989. feature.timeaccessioned,
  12990. feature.timelastmodified
  12991. FROM (feature
  12992. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  12993. WHERE ((cvterm.name)::text = 'decreased_transcript_stability_variant'::text);
  12994. --
  12995. -- Name: decreased_transcription_rate_variant; Type: VIEW; Schema: so; Owner: -
  12996. --
  12997. CREATE VIEW decreased_transcription_rate_variant AS
  12998. SELECT feature.feature_id AS decreased_transcription_rate_variant_id,
  12999. feature.feature_id,
  13000. feature.dbxref_id,
  13001. feature.organism_id,
  13002. feature.name,
  13003. feature.uniquename,
  13004. feature.residues,
  13005. feature.seqlen,
  13006. feature.md5checksum,
  13007. feature.type_id,
  13008. feature.is_analysis,
  13009. feature.is_obsolete,
  13010. feature.timeaccessioned,
  13011. feature.timelastmodified
  13012. FROM (feature
  13013. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13014. WHERE ((cvterm.name)::text = 'decreased_transcription_rate_variant'::text);
  13015. --
  13016. -- Name: decreased_translational_product_level; Type: VIEW; Schema: so; Owner: -
  13017. --
  13018. CREATE VIEW decreased_translational_product_level AS
  13019. SELECT feature.feature_id AS decreased_translational_product_level_id,
  13020. feature.feature_id,
  13021. feature.dbxref_id,
  13022. feature.organism_id,
  13023. feature.name,
  13024. feature.uniquename,
  13025. feature.residues,
  13026. feature.seqlen,
  13027. feature.md5checksum,
  13028. feature.type_id,
  13029. feature.is_analysis,
  13030. feature.is_obsolete,
  13031. feature.timeaccessioned,
  13032. feature.timelastmodified
  13033. FROM (feature
  13034. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13035. WHERE ((cvterm.name)::text = 'decreased_translational_product_level'::text);
  13036. --
  13037. -- Name: defective_conjugative_transposon; Type: VIEW; Schema: so; Owner: -
  13038. --
  13039. CREATE VIEW defective_conjugative_transposon AS
  13040. SELECT feature.feature_id AS defective_conjugative_transposon_id,
  13041. feature.feature_id,
  13042. feature.dbxref_id,
  13043. feature.organism_id,
  13044. feature.name,
  13045. feature.uniquename,
  13046. feature.residues,
  13047. feature.seqlen,
  13048. feature.md5checksum,
  13049. feature.type_id,
  13050. feature.is_analysis,
  13051. feature.is_obsolete,
  13052. feature.timeaccessioned,
  13053. feature.timelastmodified
  13054. FROM (feature
  13055. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13056. WHERE ((cvterm.name)::text = 'defective_conjugative_transposon'::text);
  13057. --
  13058. -- Name: deficient_inversion; Type: VIEW; Schema: so; Owner: -
  13059. --
  13060. CREATE VIEW deficient_inversion AS
  13061. SELECT feature.feature_id AS deficient_inversion_id,
  13062. feature.feature_id,
  13063. feature.dbxref_id,
  13064. feature.organism_id,
  13065. feature.name,
  13066. feature.uniquename,
  13067. feature.residues,
  13068. feature.seqlen,
  13069. feature.md5checksum,
  13070. feature.type_id,
  13071. feature.is_analysis,
  13072. feature.is_obsolete,
  13073. feature.timeaccessioned,
  13074. feature.timelastmodified
  13075. FROM (feature
  13076. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13077. WHERE ((cvterm.name)::text = 'deficient_inversion'::text);
  13078. --
  13079. -- Name: deficient_translocation; Type: VIEW; Schema: so; Owner: -
  13080. --
  13081. CREATE VIEW deficient_translocation AS
  13082. SELECT feature.feature_id AS deficient_translocation_id,
  13083. feature.feature_id,
  13084. feature.dbxref_id,
  13085. feature.organism_id,
  13086. feature.name,
  13087. feature.uniquename,
  13088. feature.residues,
  13089. feature.seqlen,
  13090. feature.md5checksum,
  13091. feature.type_id,
  13092. feature.is_analysis,
  13093. feature.is_obsolete,
  13094. feature.timeaccessioned,
  13095. feature.timelastmodified
  13096. FROM (feature
  13097. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13098. WHERE ((cvterm.name)::text = 'deficient_translocation'::text);
  13099. --
  13100. -- Name: deletion; Type: VIEW; Schema: so; Owner: -
  13101. --
  13102. CREATE VIEW deletion AS
  13103. SELECT feature.feature_id AS deletion_id,
  13104. feature.feature_id,
  13105. feature.dbxref_id,
  13106. feature.organism_id,
  13107. feature.name,
  13108. feature.uniquename,
  13109. feature.residues,
  13110. feature.seqlen,
  13111. feature.md5checksum,
  13112. feature.type_id,
  13113. feature.is_analysis,
  13114. feature.is_obsolete,
  13115. feature.timeaccessioned,
  13116. feature.timelastmodified
  13117. FROM (feature
  13118. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13119. WHERE ((cvterm.name)::text = 'deletion'::text);
  13120. --
  13121. -- Name: deletion_breakpoint; Type: VIEW; Schema: so; Owner: -
  13122. --
  13123. CREATE VIEW deletion_breakpoint AS
  13124. SELECT feature.feature_id AS deletion_breakpoint_id,
  13125. feature.feature_id,
  13126. feature.dbxref_id,
  13127. feature.organism_id,
  13128. feature.name,
  13129. feature.uniquename,
  13130. feature.residues,
  13131. feature.seqlen,
  13132. feature.md5checksum,
  13133. feature.type_id,
  13134. feature.is_analysis,
  13135. feature.is_obsolete,
  13136. feature.timeaccessioned,
  13137. feature.timelastmodified
  13138. FROM (feature
  13139. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13140. WHERE ((cvterm.name)::text = 'deletion_breakpoint'::text);
  13141. --
  13142. -- Name: deletion_junction; Type: VIEW; Schema: so; Owner: -
  13143. --
  13144. CREATE VIEW deletion_junction AS
  13145. SELECT feature.feature_id AS deletion_junction_id,
  13146. feature.feature_id,
  13147. feature.dbxref_id,
  13148. feature.organism_id,
  13149. feature.name,
  13150. feature.uniquename,
  13151. feature.residues,
  13152. feature.seqlen,
  13153. feature.md5checksum,
  13154. feature.type_id,
  13155. feature.is_analysis,
  13156. feature.is_obsolete,
  13157. feature.timeaccessioned,
  13158. feature.timelastmodified
  13159. FROM (feature
  13160. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13161. WHERE ((cvterm.name)::text = 'deletion_junction'::text);
  13162. --
  13163. -- Name: designed_sequence; Type: VIEW; Schema: so; Owner: -
  13164. --
  13165. CREATE VIEW designed_sequence AS
  13166. SELECT feature.feature_id AS designed_sequence_id,
  13167. feature.feature_id,
  13168. feature.dbxref_id,
  13169. feature.organism_id,
  13170. feature.name,
  13171. feature.uniquename,
  13172. feature.residues,
  13173. feature.seqlen,
  13174. feature.md5checksum,
  13175. feature.type_id,
  13176. feature.is_analysis,
  13177. feature.is_obsolete,
  13178. feature.timeaccessioned,
  13179. feature.timelastmodified
  13180. FROM (feature
  13181. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13182. WHERE ((cvterm.name)::text = 'designed_sequence'::text);
  13183. --
  13184. -- Name: dexstrosynaptic_chromosome; Type: VIEW; Schema: so; Owner: -
  13185. --
  13186. CREATE VIEW dexstrosynaptic_chromosome AS
  13187. SELECT feature.feature_id AS dexstrosynaptic_chromosome_id,
  13188. feature.feature_id,
  13189. feature.dbxref_id,
  13190. feature.organism_id,
  13191. feature.name,
  13192. feature.uniquename,
  13193. feature.residues,
  13194. feature.seqlen,
  13195. feature.md5checksum,
  13196. feature.type_id,
  13197. feature.is_analysis,
  13198. feature.is_obsolete,
  13199. feature.timeaccessioned,
  13200. feature.timelastmodified
  13201. FROM (feature
  13202. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13203. WHERE ((cvterm.name)::text = 'dexstrosynaptic_chromosome'::text);
  13204. --
  13205. -- Name: dhu_loop; Type: VIEW; Schema: so; Owner: -
  13206. --
  13207. CREATE VIEW dhu_loop AS
  13208. SELECT feature.feature_id AS dhu_loop_id,
  13209. feature.feature_id,
  13210. feature.dbxref_id,
  13211. feature.organism_id,
  13212. feature.name,
  13213. feature.uniquename,
  13214. feature.residues,
  13215. feature.seqlen,
  13216. feature.md5checksum,
  13217. feature.type_id,
  13218. feature.is_analysis,
  13219. feature.is_obsolete,
  13220. feature.timeaccessioned,
  13221. feature.timelastmodified
  13222. FROM (feature
  13223. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13224. WHERE ((cvterm.name)::text = 'DHU_loop'::text);
  13225. --
  13226. -- Name: dicistronic; Type: VIEW; Schema: so; Owner: -
  13227. --
  13228. CREATE VIEW dicistronic AS
  13229. SELECT feature.feature_id AS dicistronic_id,
  13230. feature.feature_id,
  13231. feature.dbxref_id,
  13232. feature.organism_id,
  13233. feature.name,
  13234. feature.uniquename,
  13235. feature.residues,
  13236. feature.seqlen,
  13237. feature.md5checksum,
  13238. feature.type_id,
  13239. feature.is_analysis,
  13240. feature.is_obsolete,
  13241. feature.timeaccessioned,
  13242. feature.timelastmodified
  13243. FROM (feature
  13244. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13245. WHERE ((cvterm.name)::text = 'dicistronic'::text);
  13246. --
  13247. -- Name: dicistronic_mrna; Type: VIEW; Schema: so; Owner: -
  13248. --
  13249. CREATE VIEW dicistronic_mrna AS
  13250. SELECT feature.feature_id AS dicistronic_mrna_id,
  13251. feature.feature_id,
  13252. feature.dbxref_id,
  13253. feature.organism_id,
  13254. feature.name,
  13255. feature.uniquename,
  13256. feature.residues,
  13257. feature.seqlen,
  13258. feature.md5checksum,
  13259. feature.type_id,
  13260. feature.is_analysis,
  13261. feature.is_obsolete,
  13262. feature.timeaccessioned,
  13263. feature.timelastmodified
  13264. FROM (feature
  13265. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13266. WHERE ((cvterm.name)::text = 'dicistronic_mRNA'::text);
  13267. --
  13268. -- Name: dicistronic_primary_transcript; Type: VIEW; Schema: so; Owner: -
  13269. --
  13270. CREATE VIEW dicistronic_primary_transcript AS
  13271. SELECT feature.feature_id AS dicistronic_primary_transcript_id,
  13272. feature.feature_id,
  13273. feature.dbxref_id,
  13274. feature.organism_id,
  13275. feature.name,
  13276. feature.uniquename,
  13277. feature.residues,
  13278. feature.seqlen,
  13279. feature.md5checksum,
  13280. feature.type_id,
  13281. feature.is_analysis,
  13282. feature.is_obsolete,
  13283. feature.timeaccessioned,
  13284. feature.timelastmodified
  13285. FROM (feature
  13286. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13287. WHERE ((cvterm.name)::text = 'dicistronic_primary_transcript'::text);
  13288. --
  13289. -- Name: dicistronic_transcript; Type: VIEW; Schema: so; Owner: -
  13290. --
  13291. CREATE VIEW dicistronic_transcript AS
  13292. SELECT feature.feature_id AS dicistronic_transcript_id,
  13293. feature.feature_id,
  13294. feature.dbxref_id,
  13295. feature.organism_id,
  13296. feature.name,
  13297. feature.uniquename,
  13298. feature.residues,
  13299. feature.seqlen,
  13300. feature.md5checksum,
  13301. feature.type_id,
  13302. feature.is_analysis,
  13303. feature.is_obsolete,
  13304. feature.timeaccessioned,
  13305. feature.timelastmodified
  13306. FROM (feature
  13307. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13308. WHERE ((((cvterm.name)::text = 'dicistronic_mRNA'::text) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_transcript'::text));
  13309. --
  13310. -- Name: dif_site; Type: VIEW; Schema: so; Owner: -
  13311. --
  13312. CREATE VIEW dif_site AS
  13313. SELECT feature.feature_id AS dif_site_id,
  13314. feature.feature_id,
  13315. feature.dbxref_id,
  13316. feature.organism_id,
  13317. feature.name,
  13318. feature.uniquename,
  13319. feature.residues,
  13320. feature.seqlen,
  13321. feature.md5checksum,
  13322. feature.type_id,
  13323. feature.is_analysis,
  13324. feature.is_obsolete,
  13325. feature.timeaccessioned,
  13326. feature.timelastmodified
  13327. FROM (feature
  13328. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13329. WHERE ((cvterm.name)::text = 'dif_site'::text);
  13330. --
  13331. -- Name: dihydrouridine; Type: VIEW; Schema: so; Owner: -
  13332. --
  13333. CREATE VIEW dihydrouridine AS
  13334. SELECT feature.feature_id AS dihydrouridine_id,
  13335. feature.feature_id,
  13336. feature.dbxref_id,
  13337. feature.organism_id,
  13338. feature.name,
  13339. feature.uniquename,
  13340. feature.residues,
  13341. feature.seqlen,
  13342. feature.md5checksum,
  13343. feature.type_id,
  13344. feature.is_analysis,
  13345. feature.is_obsolete,
  13346. feature.timeaccessioned,
  13347. feature.timelastmodified
  13348. FROM (feature
  13349. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13350. WHERE ((cvterm.name)::text = 'dihydrouridine'::text);
  13351. --
  13352. -- Name: dinucleotide_repeat_microsatellite_feature; Type: VIEW; Schema: so; Owner: -
  13353. --
  13354. CREATE VIEW dinucleotide_repeat_microsatellite_feature AS
  13355. SELECT feature.feature_id AS dinucleotide_repeat_microsatellite_feature_id,
  13356. feature.feature_id,
  13357. feature.dbxref_id,
  13358. feature.organism_id,
  13359. feature.name,
  13360. feature.uniquename,
  13361. feature.residues,
  13362. feature.seqlen,
  13363. feature.md5checksum,
  13364. feature.type_id,
  13365. feature.is_analysis,
  13366. feature.is_obsolete,
  13367. feature.timeaccessioned,
  13368. feature.timelastmodified
  13369. FROM (feature
  13370. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13371. WHERE ((cvterm.name)::text = 'dinucleotide_repeat_microsatellite_feature'::text);
  13372. --
  13373. -- Name: diplotype; Type: VIEW; Schema: so; Owner: -
  13374. --
  13375. CREATE VIEW diplotype AS
  13376. SELECT feature.feature_id AS diplotype_id,
  13377. feature.feature_id,
  13378. feature.dbxref_id,
  13379. feature.organism_id,
  13380. feature.name,
  13381. feature.uniquename,
  13382. feature.residues,
  13383. feature.seqlen,
  13384. feature.md5checksum,
  13385. feature.type_id,
  13386. feature.is_analysis,
  13387. feature.is_obsolete,
  13388. feature.timeaccessioned,
  13389. feature.timelastmodified
  13390. FROM (feature
  13391. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13392. WHERE ((cvterm.name)::text = 'diplotype'::text);
  13393. --
  13394. -- Name: direct; Type: VIEW; Schema: so; Owner: -
  13395. --
  13396. CREATE VIEW direct AS
  13397. SELECT feature.feature_id AS direct_id,
  13398. feature.feature_id,
  13399. feature.dbxref_id,
  13400. feature.organism_id,
  13401. feature.name,
  13402. feature.uniquename,
  13403. feature.residues,
  13404. feature.seqlen,
  13405. feature.md5checksum,
  13406. feature.type_id,
  13407. feature.is_analysis,
  13408. feature.is_obsolete,
  13409. feature.timeaccessioned,
  13410. feature.timelastmodified
  13411. FROM (feature
  13412. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13413. WHERE ((cvterm.name)::text = 'direct'::text);
  13414. --
  13415. -- Name: direct_repeat; Type: VIEW; Schema: so; Owner: -
  13416. --
  13417. CREATE VIEW direct_repeat AS
  13418. SELECT feature.feature_id AS direct_repeat_id,
  13419. feature.feature_id,
  13420. feature.dbxref_id,
  13421. feature.organism_id,
  13422. feature.name,
  13423. feature.uniquename,
  13424. feature.residues,
  13425. feature.seqlen,
  13426. feature.md5checksum,
  13427. feature.type_id,
  13428. feature.is_analysis,
  13429. feature.is_obsolete,
  13430. feature.timeaccessioned,
  13431. feature.timelastmodified
  13432. FROM (feature
  13433. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13434. WHERE ((((cvterm.name)::text = 'target_site_duplication'::text) OR ((cvterm.name)::text = 'CRISPR'::text)) OR ((cvterm.name)::text = 'direct_repeat'::text));
  13435. --
  13436. -- Name: direct_tandem_duplication; Type: VIEW; Schema: so; Owner: -
  13437. --
  13438. CREATE VIEW direct_tandem_duplication AS
  13439. SELECT feature.feature_id AS direct_tandem_duplication_id,
  13440. feature.feature_id,
  13441. feature.dbxref_id,
  13442. feature.organism_id,
  13443. feature.name,
  13444. feature.uniquename,
  13445. feature.residues,
  13446. feature.seqlen,
  13447. feature.md5checksum,
  13448. feature.type_id,
  13449. feature.is_analysis,
  13450. feature.is_obsolete,
  13451. feature.timeaccessioned,
  13452. feature.timelastmodified
  13453. FROM (feature
  13454. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13455. WHERE ((cvterm.name)::text = 'direct_tandem_duplication'::text);
  13456. --
  13457. -- Name: direction_attribute; Type: VIEW; Schema: so; Owner: -
  13458. --
  13459. CREATE VIEW direction_attribute AS
  13460. SELECT feature.feature_id AS direction_attribute_id,
  13461. feature.feature_id,
  13462. feature.dbxref_id,
  13463. feature.organism_id,
  13464. feature.name,
  13465. feature.uniquename,
  13466. feature.residues,
  13467. feature.seqlen,
  13468. feature.md5checksum,
  13469. feature.type_id,
  13470. feature.is_analysis,
  13471. feature.is_obsolete,
  13472. feature.timeaccessioned,
  13473. feature.timelastmodified
  13474. FROM (feature
  13475. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13476. WHERE ((((cvterm.name)::text = 'forward'::text) OR ((cvterm.name)::text = 'reverse'::text)) OR ((cvterm.name)::text = 'direction_attribute'::text));
  13477. --
  13478. -- Name: disease_associated_variant; Type: VIEW; Schema: so; Owner: -
  13479. --
  13480. CREATE VIEW disease_associated_variant AS
  13481. SELECT feature.feature_id AS disease_associated_variant_id,
  13482. feature.feature_id,
  13483. feature.dbxref_id,
  13484. feature.organism_id,
  13485. feature.name,
  13486. feature.uniquename,
  13487. feature.residues,
  13488. feature.seqlen,
  13489. feature.md5checksum,
  13490. feature.type_id,
  13491. feature.is_analysis,
  13492. feature.is_obsolete,
  13493. feature.timeaccessioned,
  13494. feature.timelastmodified
  13495. FROM (feature
  13496. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13497. WHERE ((cvterm.name)::text = 'disease_associated_variant'::text);
  13498. --
  13499. -- Name: disease_causing_variant; Type: VIEW; Schema: so; Owner: -
  13500. --
  13501. CREATE VIEW disease_causing_variant AS
  13502. SELECT feature.feature_id AS disease_causing_variant_id,
  13503. feature.feature_id,
  13504. feature.dbxref_id,
  13505. feature.organism_id,
  13506. feature.name,
  13507. feature.uniquename,
  13508. feature.residues,
  13509. feature.seqlen,
  13510. feature.md5checksum,
  13511. feature.type_id,
  13512. feature.is_analysis,
  13513. feature.is_obsolete,
  13514. feature.timeaccessioned,
  13515. feature.timelastmodified
  13516. FROM (feature
  13517. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13518. WHERE ((cvterm.name)::text = 'disease_causing_variant'::text);
  13519. --
  13520. -- Name: dispersed_repeat; Type: VIEW; Schema: so; Owner: -
  13521. --
  13522. CREATE VIEW dispersed_repeat AS
  13523. SELECT feature.feature_id AS dispersed_repeat_id,
  13524. feature.feature_id,
  13525. feature.dbxref_id,
  13526. feature.organism_id,
  13527. feature.name,
  13528. feature.uniquename,
  13529. feature.residues,
  13530. feature.seqlen,
  13531. feature.md5checksum,
  13532. feature.type_id,
  13533. feature.is_analysis,
  13534. feature.is_obsolete,
  13535. feature.timeaccessioned,
  13536. feature.timelastmodified
  13537. FROM (feature
  13538. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13539. WHERE ((cvterm.name)::text = 'dispersed_repeat'::text);
  13540. --
  13541. -- Name: distal_promoter_element; Type: VIEW; Schema: so; Owner: -
  13542. --
  13543. CREATE VIEW distal_promoter_element AS
  13544. SELECT feature.feature_id AS distal_promoter_element_id,
  13545. feature.feature_id,
  13546. feature.dbxref_id,
  13547. feature.organism_id,
  13548. feature.name,
  13549. feature.uniquename,
  13550. feature.residues,
  13551. feature.seqlen,
  13552. feature.md5checksum,
  13553. feature.type_id,
  13554. feature.is_analysis,
  13555. feature.is_obsolete,
  13556. feature.timeaccessioned,
  13557. feature.timelastmodified
  13558. FROM (feature
  13559. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13560. WHERE ((cvterm.name)::text = 'distal_promoter_element'::text);
  13561. --
  13562. -- Name: distant_three_prime_recoding_signal; Type: VIEW; Schema: so; Owner: -
  13563. --
  13564. CREATE VIEW distant_three_prime_recoding_signal AS
  13565. SELECT feature.feature_id AS distant_three_prime_recoding_signal_id,
  13566. feature.feature_id,
  13567. feature.dbxref_id,
  13568. feature.organism_id,
  13569. feature.name,
  13570. feature.uniquename,
  13571. feature.residues,
  13572. feature.seqlen,
  13573. feature.md5checksum,
  13574. feature.type_id,
  13575. feature.is_analysis,
  13576. feature.is_obsolete,
  13577. feature.timeaccessioned,
  13578. feature.timelastmodified
  13579. FROM (feature
  13580. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13581. WHERE ((cvterm.name)::text = 'distant_three_prime_recoding_signal'::text);
  13582. --
  13583. -- Name: dj_c_cluster; Type: VIEW; Schema: so; Owner: -
  13584. --
  13585. CREATE VIEW dj_c_cluster AS
  13586. SELECT feature.feature_id AS dj_c_cluster_id,
  13587. feature.feature_id,
  13588. feature.dbxref_id,
  13589. feature.organism_id,
  13590. feature.name,
  13591. feature.uniquename,
  13592. feature.residues,
  13593. feature.seqlen,
  13594. feature.md5checksum,
  13595. feature.type_id,
  13596. feature.is_analysis,
  13597. feature.is_obsolete,
  13598. feature.timeaccessioned,
  13599. feature.timelastmodified
  13600. FROM (feature
  13601. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13602. WHERE ((cvterm.name)::text = 'DJ_C_cluster'::text);
  13603. --
  13604. -- Name: dj_gene; Type: VIEW; Schema: so; Owner: -
  13605. --
  13606. CREATE VIEW dj_gene AS
  13607. SELECT feature.feature_id AS dj_gene_id,
  13608. feature.feature_id,
  13609. feature.dbxref_id,
  13610. feature.organism_id,
  13611. feature.name,
  13612. feature.uniquename,
  13613. feature.residues,
  13614. feature.seqlen,
  13615. feature.md5checksum,
  13616. feature.type_id,
  13617. feature.is_analysis,
  13618. feature.is_obsolete,
  13619. feature.timeaccessioned,
  13620. feature.timelastmodified
  13621. FROM (feature
  13622. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13623. WHERE ((cvterm.name)::text = 'DJ_gene'::text);
  13624. --
  13625. -- Name: dj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
  13626. --
  13627. CREATE VIEW dj_j_c_cluster AS
  13628. SELECT feature.feature_id AS dj_j_c_cluster_id,
  13629. feature.feature_id,
  13630. feature.dbxref_id,
  13631. feature.organism_id,
  13632. feature.name,
  13633. feature.uniquename,
  13634. feature.residues,
  13635. feature.seqlen,
  13636. feature.md5checksum,
  13637. feature.type_id,
  13638. feature.is_analysis,
  13639. feature.is_obsolete,
  13640. feature.timeaccessioned,
  13641. feature.timelastmodified
  13642. FROM (feature
  13643. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13644. WHERE ((cvterm.name)::text = 'DJ_J_C_cluster'::text);
  13645. --
  13646. -- Name: dj_j_cluster; Type: VIEW; Schema: so; Owner: -
  13647. --
  13648. CREATE VIEW dj_j_cluster AS
  13649. SELECT feature.feature_id AS dj_j_cluster_id,
  13650. feature.feature_id,
  13651. feature.dbxref_id,
  13652. feature.organism_id,
  13653. feature.name,
  13654. feature.uniquename,
  13655. feature.residues,
  13656. feature.seqlen,
  13657. feature.md5checksum,
  13658. feature.type_id,
  13659. feature.is_analysis,
  13660. feature.is_obsolete,
  13661. feature.timeaccessioned,
  13662. feature.timelastmodified
  13663. FROM (feature
  13664. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13665. WHERE ((cvterm.name)::text = 'DJ_J_cluster'::text);
  13666. --
  13667. -- Name: dmv1_motif; Type: VIEW; Schema: so; Owner: -
  13668. --
  13669. CREATE VIEW dmv1_motif AS
  13670. SELECT feature.feature_id AS dmv1_motif_id,
  13671. feature.feature_id,
  13672. feature.dbxref_id,
  13673. feature.organism_id,
  13674. feature.name,
  13675. feature.uniquename,
  13676. feature.residues,
  13677. feature.seqlen,
  13678. feature.md5checksum,
  13679. feature.type_id,
  13680. feature.is_analysis,
  13681. feature.is_obsolete,
  13682. feature.timeaccessioned,
  13683. feature.timelastmodified
  13684. FROM (feature
  13685. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13686. WHERE ((cvterm.name)::text = 'DMv1_motif'::text);
  13687. --
  13688. -- Name: dmv2_motif; Type: VIEW; Schema: so; Owner: -
  13689. --
  13690. CREATE VIEW dmv2_motif AS
  13691. SELECT feature.feature_id AS dmv2_motif_id,
  13692. feature.feature_id,
  13693. feature.dbxref_id,
  13694. feature.organism_id,
  13695. feature.name,
  13696. feature.uniquename,
  13697. feature.residues,
  13698. feature.seqlen,
  13699. feature.md5checksum,
  13700. feature.type_id,
  13701. feature.is_analysis,
  13702. feature.is_obsolete,
  13703. feature.timeaccessioned,
  13704. feature.timelastmodified
  13705. FROM (feature
  13706. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13707. WHERE ((cvterm.name)::text = 'DMv2_motif'::text);
  13708. --
  13709. -- Name: dmv3_motif; Type: VIEW; Schema: so; Owner: -
  13710. --
  13711. CREATE VIEW dmv3_motif AS
  13712. SELECT feature.feature_id AS dmv3_motif_id,
  13713. feature.feature_id,
  13714. feature.dbxref_id,
  13715. feature.organism_id,
  13716. feature.name,
  13717. feature.uniquename,
  13718. feature.residues,
  13719. feature.seqlen,
  13720. feature.md5checksum,
  13721. feature.type_id,
  13722. feature.is_analysis,
  13723. feature.is_obsolete,
  13724. feature.timeaccessioned,
  13725. feature.timelastmodified
  13726. FROM (feature
  13727. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13728. WHERE ((cvterm.name)::text = 'DMv3_motif'::text);
  13729. --
  13730. -- Name: dmv4_motif; Type: VIEW; Schema: so; Owner: -
  13731. --
  13732. CREATE VIEW dmv4_motif AS
  13733. SELECT feature.feature_id AS dmv4_motif_id,
  13734. feature.feature_id,
  13735. feature.dbxref_id,
  13736. feature.organism_id,
  13737. feature.name,
  13738. feature.uniquename,
  13739. feature.residues,
  13740. feature.seqlen,
  13741. feature.md5checksum,
  13742. feature.type_id,
  13743. feature.is_analysis,
  13744. feature.is_obsolete,
  13745. feature.timeaccessioned,
  13746. feature.timelastmodified
  13747. FROM (feature
  13748. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13749. WHERE ((cvterm.name)::text = 'DMv4_motif'::text);
  13750. --
  13751. -- Name: dmv5_motif; Type: VIEW; Schema: so; Owner: -
  13752. --
  13753. CREATE VIEW dmv5_motif AS
  13754. SELECT feature.feature_id AS dmv5_motif_id,
  13755. feature.feature_id,
  13756. feature.dbxref_id,
  13757. feature.organism_id,
  13758. feature.name,
  13759. feature.uniquename,
  13760. feature.residues,
  13761. feature.seqlen,
  13762. feature.md5checksum,
  13763. feature.type_id,
  13764. feature.is_analysis,
  13765. feature.is_obsolete,
  13766. feature.timeaccessioned,
  13767. feature.timelastmodified
  13768. FROM (feature
  13769. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13770. WHERE ((cvterm.name)::text = 'DMv5_motif'::text);
  13771. --
  13772. -- Name: dna; Type: VIEW; Schema: so; Owner: -
  13773. --
  13774. CREATE VIEW dna AS
  13775. SELECT feature.feature_id AS dna_id,
  13776. feature.feature_id,
  13777. feature.dbxref_id,
  13778. feature.organism_id,
  13779. feature.name,
  13780. feature.uniquename,
  13781. feature.residues,
  13782. feature.seqlen,
  13783. feature.md5checksum,
  13784. feature.type_id,
  13785. feature.is_analysis,
  13786. feature.is_obsolete,
  13787. feature.timeaccessioned,
  13788. feature.timelastmodified
  13789. FROM (feature
  13790. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13791. WHERE ((((((cvterm.name)::text = 'cDNA'::text) OR ((cvterm.name)::text = 'genomic_DNA'::text)) OR ((cvterm.name)::text = 'single_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'double_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'DNA'::text));
  13792. --
  13793. -- Name: dna_aptamer; Type: VIEW; Schema: so; Owner: -
  13794. --
  13795. CREATE VIEW dna_aptamer AS
  13796. SELECT feature.feature_id AS dna_aptamer_id,
  13797. feature.feature_id,
  13798. feature.dbxref_id,
  13799. feature.organism_id,
  13800. feature.name,
  13801. feature.uniquename,
  13802. feature.residues,
  13803. feature.seqlen,
  13804. feature.md5checksum,
  13805. feature.type_id,
  13806. feature.is_analysis,
  13807. feature.is_obsolete,
  13808. feature.timeaccessioned,
  13809. feature.timelastmodified
  13810. FROM (feature
  13811. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13812. WHERE ((cvterm.name)::text = 'DNA_aptamer'::text);
  13813. --
  13814. -- Name: dna_binding_site; Type: VIEW; Schema: so; Owner: -
  13815. --
  13816. CREATE VIEW dna_binding_site AS
  13817. SELECT feature.feature_id AS dna_binding_site_id,
  13818. feature.feature_id,
  13819. feature.dbxref_id,
  13820. feature.organism_id,
  13821. feature.name,
  13822. feature.uniquename,
  13823. feature.residues,
  13824. feature.seqlen,
  13825. feature.md5checksum,
  13826. feature.type_id,
  13827. feature.is_analysis,
  13828. feature.is_obsolete,
  13829. feature.timeaccessioned,
  13830. feature.timelastmodified
  13831. FROM (feature
  13832. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13833. WHERE (((cvterm.name)::text = 'polypeptide_DNA_contact'::text) OR ((cvterm.name)::text = 'DNA_binding_site'::text));
  13834. --
  13835. -- Name: dna_chromosome; Type: VIEW; Schema: so; Owner: -
  13836. --
  13837. CREATE VIEW dna_chromosome AS
  13838. SELECT feature.feature_id AS dna_chromosome_id,
  13839. feature.feature_id,
  13840. feature.dbxref_id,
  13841. feature.organism_id,
  13842. feature.name,
  13843. feature.uniquename,
  13844. feature.residues,
  13845. feature.seqlen,
  13846. feature.md5checksum,
  13847. feature.type_id,
  13848. feature.is_analysis,
  13849. feature.is_obsolete,
  13850. feature.timeaccessioned,
  13851. feature.timelastmodified
  13852. FROM (feature
  13853. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13854. WHERE ((((((((cvterm.name)::text = 'double_stranded_DNA_chromosome'::text) OR ((cvterm.name)::text = 'single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'DNA_chromosome'::text));
  13855. --
  13856. -- Name: dna_constraint_sequence; Type: VIEW; Schema: so; Owner: -
  13857. --
  13858. CREATE VIEW dna_constraint_sequence AS
  13859. SELECT feature.feature_id AS dna_constraint_sequence_id,
  13860. feature.feature_id,
  13861. feature.dbxref_id,
  13862. feature.organism_id,
  13863. feature.name,
  13864. feature.uniquename,
  13865. feature.residues,
  13866. feature.seqlen,
  13867. feature.md5checksum,
  13868. feature.type_id,
  13869. feature.is_analysis,
  13870. feature.is_obsolete,
  13871. feature.timeaccessioned,
  13872. feature.timelastmodified
  13873. FROM (feature
  13874. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13875. WHERE ((cvterm.name)::text = 'DNA_constraint_sequence'::text);
  13876. --
  13877. -- Name: dna_motif; Type: VIEW; Schema: so; Owner: -
  13878. --
  13879. CREATE VIEW dna_motif AS
  13880. SELECT feature.feature_id AS dna_motif_id,
  13881. feature.feature_id,
  13882. feature.dbxref_id,
  13883. feature.organism_id,
  13884. feature.name,
  13885. feature.uniquename,
  13886. feature.residues,
  13887. feature.seqlen,
  13888. feature.md5checksum,
  13889. feature.type_id,
  13890. feature.is_analysis,
  13891. feature.is_obsolete,
  13892. feature.timeaccessioned,
  13893. feature.timelastmodified
  13894. FROM (feature
  13895. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13896. WHERE ((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'PSE_motif'::text) OR ((cvterm.name)::text = 'CAAT_signal'::text)) OR ((cvterm.name)::text = 'minus_10_signal'::text)) OR ((cvterm.name)::text = 'minus_35_signal'::text)) OR ((cvterm.name)::text = 'DRE_motif'::text)) OR ((cvterm.name)::text = 'E_box_motif'::text)) OR ((cvterm.name)::text = 'INR1_motif'::text)) OR ((cvterm.name)::text = 'GAGA_motif'::text)) OR ((cvterm.name)::text = 'octamer_motif'::text)) OR ((cvterm.name)::text = 'retinoic_acid_responsive_element'::text)) OR ((cvterm.name)::text = 'promoter_element'::text)) OR ((cvterm.name)::text = 'DCE_SI'::text)) OR ((cvterm.name)::text = 'DCE_SII'::text)) OR ((cvterm.name)::text = 'DCE_SIII'::text)) OR ((cvterm.name)::text = 'minus_12_signal'::text)) OR ((cvterm.name)::text = 'minus_24_signal'::text)) OR ((cvterm.name)::text = 'GC_rich_promoter_region'::text)) OR ((cvterm.name)::text = 'DMv4_motif'::text)) OR ((cvterm.name)::text = 'DMv5_motif'::text)) OR ((cvterm.name)::text = 'DMv3_motif'::text)) OR ((cvterm.name)::text = 'DMv2_motif'::text)) OR ((cvterm.name)::text = 'DPE1_motif'::text)) OR ((cvterm.name)::text = 'DMv1_motif'::text)) OR ((cvterm.name)::text = 'NDM2_motif'::text)) OR ((cvterm.name)::text = 'NDM3_motif'::text)) OR ((cvterm.name)::text = 'core_promoter_element'::text)) OR ((cvterm.name)::text = 'regulatory_promoter_element'::text)) OR ((cvterm.name)::text = 'INR_motif'::text)) OR ((cvterm.name)::text = 'DPE_motif'::text)) OR ((cvterm.name)::text = 'BREu_motif'::text)) OR ((cvterm.name)::text = 'TATA_box'::text)) OR ((cvterm.name)::text = 'A_box'::text)) OR ((cvterm.name)::text = 'B_box'::text)) OR ((cvterm.name)::text = 'C_box'::text)) OR ((cvterm.name)::text = 'MTE'::text)) OR ((cvterm.name)::text = 'BREd_motif'::text)) OR ((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'proximal_promoter_element'::text)) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'DNA_motif'::text));
  13897. --
  13898. -- Name: dna_sequence_secondary_structure; Type: VIEW; Schema: so; Owner: -
  13899. --
  13900. CREATE VIEW dna_sequence_secondary_structure AS
  13901. SELECT feature.feature_id AS dna_sequence_secondary_structure_id,
  13902. feature.feature_id,
  13903. feature.dbxref_id,
  13904. feature.organism_id,
  13905. feature.name,
  13906. feature.uniquename,
  13907. feature.residues,
  13908. feature.seqlen,
  13909. feature.md5checksum,
  13910. feature.type_id,
  13911. feature.is_analysis,
  13912. feature.is_obsolete,
  13913. feature.timeaccessioned,
  13914. feature.timelastmodified
  13915. FROM (feature
  13916. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13917. WHERE (((cvterm.name)::text = 'i_motif'::text) OR ((cvterm.name)::text = 'DNA_sequence_secondary_structure'::text));
  13918. --
  13919. -- Name: dna_transposon; Type: VIEW; Schema: so; Owner: -
  13920. --
  13921. CREATE VIEW dna_transposon AS
  13922. SELECT feature.feature_id AS dna_transposon_id,
  13923. feature.feature_id,
  13924. feature.dbxref_id,
  13925. feature.organism_id,
  13926. feature.name,
  13927. feature.uniquename,
  13928. feature.residues,
  13929. feature.seqlen,
  13930. feature.md5checksum,
  13931. feature.type_id,
  13932. feature.is_analysis,
  13933. feature.is_obsolete,
  13934. feature.timeaccessioned,
  13935. feature.timelastmodified
  13936. FROM (feature
  13937. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13938. WHERE ((((((((((cvterm.name)::text = 'terminal_inverted_repeat_element'::text) OR ((cvterm.name)::text = 'foldback_element'::text)) OR ((cvterm.name)::text = 'conjugative_transposon'::text)) OR ((cvterm.name)::text = 'helitron'::text)) OR ((cvterm.name)::text = 'p_element'::text)) OR ((cvterm.name)::text = 'MITE'::text)) OR ((cvterm.name)::text = 'insertion_sequence'::text)) OR ((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'DNA_transposon'::text));
  13939. --
  13940. -- Name: dnasei_hypersensitive_site; Type: VIEW; Schema: so; Owner: -
  13941. --
  13942. CREATE VIEW dnasei_hypersensitive_site AS
  13943. SELECT feature.feature_id AS dnasei_hypersensitive_site_id,
  13944. feature.feature_id,
  13945. feature.dbxref_id,
  13946. feature.organism_id,
  13947. feature.name,
  13948. feature.uniquename,
  13949. feature.residues,
  13950. feature.seqlen,
  13951. feature.md5checksum,
  13952. feature.type_id,
  13953. feature.is_analysis,
  13954. feature.is_obsolete,
  13955. feature.timeaccessioned,
  13956. feature.timelastmodified
  13957. FROM (feature
  13958. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13959. WHERE ((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text);
  13960. --
  13961. -- Name: dnazyme; Type: VIEW; Schema: so; Owner: -
  13962. --
  13963. CREATE VIEW dnazyme AS
  13964. SELECT feature.feature_id AS dnazyme_id,
  13965. feature.feature_id,
  13966. feature.dbxref_id,
  13967. feature.organism_id,
  13968. feature.name,
  13969. feature.uniquename,
  13970. feature.residues,
  13971. feature.seqlen,
  13972. feature.md5checksum,
  13973. feature.type_id,
  13974. feature.is_analysis,
  13975. feature.is_obsolete,
  13976. feature.timeaccessioned,
  13977. feature.timelastmodified
  13978. FROM (feature
  13979. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  13980. WHERE ((cvterm.name)::text = 'DNAzyme'::text);
  13981. --
  13982. -- Name: double; Type: VIEW; Schema: so; Owner: -
  13983. --
  13984. CREATE VIEW double AS
  13985. SELECT feature.feature_id AS double_id,
  13986. feature.feature_id,
  13987. feature.dbxref_id,
  13988. feature.organism_id,
  13989. feature.name,
  13990. feature.uniquename,
  13991. feature.residues,
  13992. feature.seqlen,
  13993. feature.md5checksum,
  13994. feature.type_id,
  13995. feature.is_analysis,
  13996. feature.is_obsolete,
  13997. feature.timeaccessioned,
  13998. feature.timelastmodified
  13999. FROM (feature
  14000. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14001. WHERE ((cvterm.name)::text = 'double'::text);
  14002. --
  14003. -- Name: double_stranded_cdna; Type: VIEW; Schema: so; Owner: -
  14004. --
  14005. CREATE VIEW double_stranded_cdna AS
  14006. SELECT feature.feature_id AS double_stranded_cdna_id,
  14007. feature.feature_id,
  14008. feature.dbxref_id,
  14009. feature.organism_id,
  14010. feature.name,
  14011. feature.uniquename,
  14012. feature.residues,
  14013. feature.seqlen,
  14014. feature.md5checksum,
  14015. feature.type_id,
  14016. feature.is_analysis,
  14017. feature.is_obsolete,
  14018. feature.timeaccessioned,
  14019. feature.timelastmodified
  14020. FROM (feature
  14021. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14022. WHERE ((cvterm.name)::text = 'double_stranded_cDNA'::text);
  14023. --
  14024. -- Name: double_stranded_dna_chromosome; Type: VIEW; Schema: so; Owner: -
  14025. --
  14026. CREATE VIEW double_stranded_dna_chromosome AS
  14027. SELECT feature.feature_id AS double_stranded_dna_chromosome_id,
  14028. feature.feature_id,
  14029. feature.dbxref_id,
  14030. feature.organism_id,
  14031. feature.name,
  14032. feature.uniquename,
  14033. feature.residues,
  14034. feature.seqlen,
  14035. feature.md5checksum,
  14036. feature.type_id,
  14037. feature.is_analysis,
  14038. feature.is_obsolete,
  14039. feature.timeaccessioned,
  14040. feature.timelastmodified
  14041. FROM (feature
  14042. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14043. WHERE ((((cvterm.name)::text = 'linear_double_stranded_DNA_chromosome'::text) OR ((cvterm.name)::text = 'circular_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_DNA_chromosome'::text));
  14044. --
  14045. -- Name: double_stranded_rna_chromosome; Type: VIEW; Schema: so; Owner: -
  14046. --
  14047. CREATE VIEW double_stranded_rna_chromosome AS
  14048. SELECT feature.feature_id AS double_stranded_rna_chromosome_id,
  14049. feature.feature_id,
  14050. feature.dbxref_id,
  14051. feature.organism_id,
  14052. feature.name,
  14053. feature.uniquename,
  14054. feature.residues,
  14055. feature.seqlen,
  14056. feature.md5checksum,
  14057. feature.type_id,
  14058. feature.is_analysis,
  14059. feature.is_obsolete,
  14060. feature.timeaccessioned,
  14061. feature.timelastmodified
  14062. FROM (feature
  14063. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14064. WHERE ((((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text) OR ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_RNA_chromosome'::text));
  14065. --
  14066. -- Name: downstream_gene_variant; Type: VIEW; Schema: so; Owner: -
  14067. --
  14068. CREATE VIEW downstream_gene_variant AS
  14069. SELECT feature.feature_id AS downstream_gene_variant_id,
  14070. feature.feature_id,
  14071. feature.dbxref_id,
  14072. feature.organism_id,
  14073. feature.name,
  14074. feature.uniquename,
  14075. feature.residues,
  14076. feature.seqlen,
  14077. feature.md5checksum,
  14078. feature.type_id,
  14079. feature.is_analysis,
  14080. feature.is_obsolete,
  14081. feature.timeaccessioned,
  14082. feature.timelastmodified
  14083. FROM (feature
  14084. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14085. WHERE ((((cvterm.name)::text = '5KB_downstream_variant'::text) OR ((cvterm.name)::text = '500B_downstream_variant'::text)) OR ((cvterm.name)::text = 'downstream_gene_variant'::text));
  14086. --
  14087. -- Name: dpe1_motif; Type: VIEW; Schema: so; Owner: -
  14088. --
  14089. CREATE VIEW dpe1_motif AS
  14090. SELECT feature.feature_id AS dpe1_motif_id,
  14091. feature.feature_id,
  14092. feature.dbxref_id,
  14093. feature.organism_id,
  14094. feature.name,
  14095. feature.uniquename,
  14096. feature.residues,
  14097. feature.seqlen,
  14098. feature.md5checksum,
  14099. feature.type_id,
  14100. feature.is_analysis,
  14101. feature.is_obsolete,
  14102. feature.timeaccessioned,
  14103. feature.timelastmodified
  14104. FROM (feature
  14105. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14106. WHERE ((cvterm.name)::text = 'DPE1_motif'::text);
  14107. --
  14108. -- Name: dpe_motif; Type: VIEW; Schema: so; Owner: -
  14109. --
  14110. CREATE VIEW dpe_motif AS
  14111. SELECT feature.feature_id AS dpe_motif_id,
  14112. feature.feature_id,
  14113. feature.dbxref_id,
  14114. feature.organism_id,
  14115. feature.name,
  14116. feature.uniquename,
  14117. feature.residues,
  14118. feature.seqlen,
  14119. feature.md5checksum,
  14120. feature.type_id,
  14121. feature.is_analysis,
  14122. feature.is_obsolete,
  14123. feature.timeaccessioned,
  14124. feature.timelastmodified
  14125. FROM (feature
  14126. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14127. WHERE ((cvterm.name)::text = 'DPE_motif'::text);
  14128. --
  14129. -- Name: dre_motif; Type: VIEW; Schema: so; Owner: -
  14130. --
  14131. CREATE VIEW dre_motif AS
  14132. SELECT feature.feature_id AS dre_motif_id,
  14133. feature.feature_id,
  14134. feature.dbxref_id,
  14135. feature.organism_id,
  14136. feature.name,
  14137. feature.uniquename,
  14138. feature.residues,
  14139. feature.seqlen,
  14140. feature.md5checksum,
  14141. feature.type_id,
  14142. feature.is_analysis,
  14143. feature.is_obsolete,
  14144. feature.timeaccessioned,
  14145. feature.timelastmodified
  14146. FROM (feature
  14147. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14148. WHERE ((cvterm.name)::text = 'DRE_motif'::text);
  14149. --
  14150. -- Name: ds_dna_viral_sequence; Type: VIEW; Schema: so; Owner: -
  14151. --
  14152. CREATE VIEW ds_dna_viral_sequence AS
  14153. SELECT feature.feature_id AS ds_dna_viral_sequence_id,
  14154. feature.feature_id,
  14155. feature.dbxref_id,
  14156. feature.organism_id,
  14157. feature.name,
  14158. feature.uniquename,
  14159. feature.residues,
  14160. feature.seqlen,
  14161. feature.md5checksum,
  14162. feature.type_id,
  14163. feature.is_analysis,
  14164. feature.is_obsolete,
  14165. feature.timeaccessioned,
  14166. feature.timelastmodified
  14167. FROM (feature
  14168. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14169. WHERE ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text);
  14170. --
  14171. -- Name: ds_oligo; Type: VIEW; Schema: so; Owner: -
  14172. --
  14173. CREATE VIEW ds_oligo AS
  14174. SELECT feature.feature_id AS ds_oligo_id,
  14175. feature.feature_id,
  14176. feature.dbxref_id,
  14177. feature.organism_id,
  14178. feature.name,
  14179. feature.uniquename,
  14180. feature.residues,
  14181. feature.seqlen,
  14182. feature.md5checksum,
  14183. feature.type_id,
  14184. feature.is_analysis,
  14185. feature.is_obsolete,
  14186. feature.timeaccessioned,
  14187. feature.timelastmodified
  14188. FROM (feature
  14189. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14190. WHERE ((((cvterm.name)::text = 'RNAi_reagent'::text) OR ((cvterm.name)::text = 'DNA_constraint_sequence'::text)) OR ((cvterm.name)::text = 'ds_oligo'::text));
  14191. --
  14192. -- Name: ds_rna_viral_sequence; Type: VIEW; Schema: so; Owner: -
  14193. --
  14194. CREATE VIEW ds_rna_viral_sequence AS
  14195. SELECT feature.feature_id AS ds_rna_viral_sequence_id,
  14196. feature.feature_id,
  14197. feature.dbxref_id,
  14198. feature.organism_id,
  14199. feature.name,
  14200. feature.uniquename,
  14201. feature.residues,
  14202. feature.seqlen,
  14203. feature.md5checksum,
  14204. feature.type_id,
  14205. feature.is_analysis,
  14206. feature.is_obsolete,
  14207. feature.timeaccessioned,
  14208. feature.timelastmodified
  14209. FROM (feature
  14210. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14211. WHERE ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text);
  14212. --
  14213. -- Name: dsra_rna; Type: VIEW; Schema: so; Owner: -
  14214. --
  14215. CREATE VIEW dsra_rna AS
  14216. SELECT feature.feature_id AS dsra_rna_id,
  14217. feature.feature_id,
  14218. feature.dbxref_id,
  14219. feature.organism_id,
  14220. feature.name,
  14221. feature.uniquename,
  14222. feature.residues,
  14223. feature.seqlen,
  14224. feature.md5checksum,
  14225. feature.type_id,
  14226. feature.is_analysis,
  14227. feature.is_obsolete,
  14228. feature.timeaccessioned,
  14229. feature.timelastmodified
  14230. FROM (feature
  14231. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14232. WHERE (((cvterm.name)::text = 'GcvB_RNA'::text) OR ((cvterm.name)::text = 'DsrA_RNA'::text));
  14233. --
  14234. -- Name: duplicated_pseudogene; Type: VIEW; Schema: so; Owner: -
  14235. --
  14236. CREATE VIEW duplicated_pseudogene AS
  14237. SELECT feature.feature_id AS duplicated_pseudogene_id,
  14238. feature.feature_id,
  14239. feature.dbxref_id,
  14240. feature.organism_id,
  14241. feature.name,
  14242. feature.uniquename,
  14243. feature.residues,
  14244. feature.seqlen,
  14245. feature.md5checksum,
  14246. feature.type_id,
  14247. feature.is_analysis,
  14248. feature.is_obsolete,
  14249. feature.timeaccessioned,
  14250. feature.timelastmodified
  14251. FROM (feature
  14252. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14253. WHERE ((cvterm.name)::text = 'duplicated_pseudogene'::text);
  14254. --
  14255. -- Name: duplication; Type: VIEW; Schema: so; Owner: -
  14256. --
  14257. CREATE VIEW duplication AS
  14258. SELECT feature.feature_id AS duplication_id,
  14259. feature.feature_id,
  14260. feature.dbxref_id,
  14261. feature.organism_id,
  14262. feature.name,
  14263. feature.uniquename,
  14264. feature.residues,
  14265. feature.seqlen,
  14266. feature.md5checksum,
  14267. feature.type_id,
  14268. feature.is_analysis,
  14269. feature.is_obsolete,
  14270. feature.timeaccessioned,
  14271. feature.timelastmodified
  14272. FROM (feature
  14273. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14274. WHERE (((((cvterm.name)::text = 'tandem_duplication'::text) OR ((cvterm.name)::text = 'direct_tandem_duplication'::text)) OR ((cvterm.name)::text = 'inverted_tandem_duplication'::text)) OR ((cvterm.name)::text = 'duplication'::text));
  14275. --
  14276. -- Name: duplication_attribute; Type: VIEW; Schema: so; Owner: -
  14277. --
  14278. CREATE VIEW duplication_attribute AS
  14279. SELECT feature.feature_id AS duplication_attribute_id,
  14280. feature.feature_id,
  14281. feature.dbxref_id,
  14282. feature.organism_id,
  14283. feature.name,
  14284. feature.uniquename,
  14285. feature.residues,
  14286. feature.seqlen,
  14287. feature.md5checksum,
  14288. feature.type_id,
  14289. feature.is_analysis,
  14290. feature.is_obsolete,
  14291. feature.timeaccessioned,
  14292. feature.timelastmodified
  14293. FROM (feature
  14294. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14295. WHERE (((cvterm.name)::text = 'free'::text) OR ((cvterm.name)::text = 'duplication_attribute'::text));
  14296. --
  14297. -- Name: dye_terminator_read; Type: VIEW; Schema: so; Owner: -
  14298. --
  14299. CREATE VIEW dye_terminator_read AS
  14300. SELECT feature.feature_id AS dye_terminator_read_id,
  14301. feature.feature_id,
  14302. feature.dbxref_id,
  14303. feature.organism_id,
  14304. feature.name,
  14305. feature.uniquename,
  14306. feature.residues,
  14307. feature.seqlen,
  14308. feature.md5checksum,
  14309. feature.type_id,
  14310. feature.is_analysis,
  14311. feature.is_obsolete,
  14312. feature.timeaccessioned,
  14313. feature.timelastmodified
  14314. FROM (feature
  14315. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14316. WHERE ((cvterm.name)::text = 'dye_terminator_read'::text);
  14317. --
  14318. -- Name: e_box_motif; Type: VIEW; Schema: so; Owner: -
  14319. --
  14320. CREATE VIEW e_box_motif AS
  14321. SELECT feature.feature_id AS e_box_motif_id,
  14322. feature.feature_id,
  14323. feature.dbxref_id,
  14324. feature.organism_id,
  14325. feature.name,
  14326. feature.uniquename,
  14327. feature.residues,
  14328. feature.seqlen,
  14329. feature.md5checksum,
  14330. feature.type_id,
  14331. feature.is_analysis,
  14332. feature.is_obsolete,
  14333. feature.timeaccessioned,
  14334. feature.timelastmodified
  14335. FROM (feature
  14336. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14337. WHERE ((cvterm.name)::text = 'E_box_motif'::text);
  14338. --
  14339. -- Name: edited; Type: VIEW; Schema: so; Owner: -
  14340. --
  14341. CREATE VIEW edited AS
  14342. SELECT feature.feature_id AS edited_id,
  14343. feature.feature_id,
  14344. feature.dbxref_id,
  14345. feature.organism_id,
  14346. feature.name,
  14347. feature.uniquename,
  14348. feature.residues,
  14349. feature.seqlen,
  14350. feature.md5checksum,
  14351. feature.type_id,
  14352. feature.is_analysis,
  14353. feature.is_obsolete,
  14354. feature.timeaccessioned,
  14355. feature.timelastmodified
  14356. FROM (feature
  14357. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14358. WHERE ((cvterm.name)::text = 'edited'::text);
  14359. --
  14360. -- Name: edited_cds; Type: VIEW; Schema: so; Owner: -
  14361. --
  14362. CREATE VIEW edited_cds AS
  14363. SELECT feature.feature_id AS edited_cds_id,
  14364. feature.feature_id,
  14365. feature.dbxref_id,
  14366. feature.organism_id,
  14367. feature.name,
  14368. feature.uniquename,
  14369. feature.residues,
  14370. feature.seqlen,
  14371. feature.md5checksum,
  14372. feature.type_id,
  14373. feature.is_analysis,
  14374. feature.is_obsolete,
  14375. feature.timeaccessioned,
  14376. feature.timelastmodified
  14377. FROM (feature
  14378. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14379. WHERE ((cvterm.name)::text = 'edited_CDS'::text);
  14380. --
  14381. -- Name: edited_mrna; Type: VIEW; Schema: so; Owner: -
  14382. --
  14383. CREATE VIEW edited_mrna AS
  14384. SELECT feature.feature_id AS edited_mrna_id,
  14385. feature.feature_id,
  14386. feature.dbxref_id,
  14387. feature.organism_id,
  14388. feature.name,
  14389. feature.uniquename,
  14390. feature.residues,
  14391. feature.seqlen,
  14392. feature.md5checksum,
  14393. feature.type_id,
  14394. feature.is_analysis,
  14395. feature.is_obsolete,
  14396. feature.timeaccessioned,
  14397. feature.timelastmodified
  14398. FROM (feature
  14399. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14400. WHERE ((cvterm.name)::text = 'edited_mRNA'::text);
  14401. --
  14402. -- Name: edited_transcript; Type: VIEW; Schema: so; Owner: -
  14403. --
  14404. CREATE VIEW edited_transcript AS
  14405. SELECT feature.feature_id AS edited_transcript_id,
  14406. feature.feature_id,
  14407. feature.dbxref_id,
  14408. feature.organism_id,
  14409. feature.name,
  14410. feature.uniquename,
  14411. feature.residues,
  14412. feature.seqlen,
  14413. feature.md5checksum,
  14414. feature.type_id,
  14415. feature.is_analysis,
  14416. feature.is_obsolete,
  14417. feature.timeaccessioned,
  14418. feature.timelastmodified
  14419. FROM (feature
  14420. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14421. WHERE ((((cvterm.name)::text = 'edited_transcript_by_A_to_I_substitution'::text) OR ((cvterm.name)::text = 'edited_mRNA'::text)) OR ((cvterm.name)::text = 'edited_transcript'::text));
  14422. --
  14423. -- Name: edited_transcript_by_a_to_i_substitution; Type: VIEW; Schema: so; Owner: -
  14424. --
  14425. CREATE VIEW edited_transcript_by_a_to_i_substitution AS
  14426. SELECT feature.feature_id AS edited_transcript_by_a_to_i_substitution_id,
  14427. feature.feature_id,
  14428. feature.dbxref_id,
  14429. feature.organism_id,
  14430. feature.name,
  14431. feature.uniquename,
  14432. feature.residues,
  14433. feature.seqlen,
  14434. feature.md5checksum,
  14435. feature.type_id,
  14436. feature.is_analysis,
  14437. feature.is_obsolete,
  14438. feature.timeaccessioned,
  14439. feature.timelastmodified
  14440. FROM (feature
  14441. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14442. WHERE ((cvterm.name)::text = 'edited_transcript_by_A_to_I_substitution'::text);
  14443. --
  14444. -- Name: edited_transcript_feature; Type: VIEW; Schema: so; Owner: -
  14445. --
  14446. CREATE VIEW edited_transcript_feature AS
  14447. SELECT feature.feature_id AS edited_transcript_feature_id,
  14448. feature.feature_id,
  14449. feature.dbxref_id,
  14450. feature.organism_id,
  14451. feature.name,
  14452. feature.uniquename,
  14453. feature.residues,
  14454. feature.seqlen,
  14455. feature.md5checksum,
  14456. feature.type_id,
  14457. feature.is_analysis,
  14458. feature.is_obsolete,
  14459. feature.timeaccessioned,
  14460. feature.timelastmodified
  14461. FROM (feature
  14462. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14463. WHERE ((((((cvterm.name)::text = 'pre_edited_region'::text) OR ((cvterm.name)::text = 'editing_block'::text)) OR ((cvterm.name)::text = 'editing_domain'::text)) OR ((cvterm.name)::text = 'unedited_region'::text)) OR ((cvterm.name)::text = 'edited_transcript_feature'::text));
  14464. --
  14465. -- Name: editing_block; Type: VIEW; Schema: so; Owner: -
  14466. --
  14467. CREATE VIEW editing_block AS
  14468. SELECT feature.feature_id AS editing_block_id,
  14469. feature.feature_id,
  14470. feature.dbxref_id,
  14471. feature.organism_id,
  14472. feature.name,
  14473. feature.uniquename,
  14474. feature.residues,
  14475. feature.seqlen,
  14476. feature.md5checksum,
  14477. feature.type_id,
  14478. feature.is_analysis,
  14479. feature.is_obsolete,
  14480. feature.timeaccessioned,
  14481. feature.timelastmodified
  14482. FROM (feature
  14483. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14484. WHERE ((cvterm.name)::text = 'editing_block'::text);
  14485. --
  14486. -- Name: editing_domain; Type: VIEW; Schema: so; Owner: -
  14487. --
  14488. CREATE VIEW editing_domain AS
  14489. SELECT feature.feature_id AS editing_domain_id,
  14490. feature.feature_id,
  14491. feature.dbxref_id,
  14492. feature.organism_id,
  14493. feature.name,
  14494. feature.uniquename,
  14495. feature.residues,
  14496. feature.seqlen,
  14497. feature.md5checksum,
  14498. feature.type_id,
  14499. feature.is_analysis,
  14500. feature.is_obsolete,
  14501. feature.timeaccessioned,
  14502. feature.timelastmodified
  14503. FROM (feature
  14504. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14505. WHERE ((cvterm.name)::text = 'editing_domain'::text);
  14506. --
  14507. -- Name: editing_variant; Type: VIEW; Schema: so; Owner: -
  14508. --
  14509. CREATE VIEW editing_variant AS
  14510. SELECT feature.feature_id AS editing_variant_id,
  14511. feature.feature_id,
  14512. feature.dbxref_id,
  14513. feature.organism_id,
  14514. feature.name,
  14515. feature.uniquename,
  14516. feature.residues,
  14517. feature.seqlen,
  14518. feature.md5checksum,
  14519. feature.type_id,
  14520. feature.is_analysis,
  14521. feature.is_obsolete,
  14522. feature.timeaccessioned,
  14523. feature.timelastmodified
  14524. FROM (feature
  14525. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14526. WHERE ((cvterm.name)::text = 'editing_variant'::text);
  14527. --
  14528. -- Name: elongated_in_frame_polypeptide_c_terminal; Type: VIEW; Schema: so; Owner: -
  14529. --
  14530. CREATE VIEW elongated_in_frame_polypeptide_c_terminal AS
  14531. SELECT feature.feature_id AS elongated_in_frame_polypeptide_c_terminal_id,
  14532. feature.feature_id,
  14533. feature.dbxref_id,
  14534. feature.organism_id,
  14535. feature.name,
  14536. feature.uniquename,
  14537. feature.residues,
  14538. feature.seqlen,
  14539. feature.md5checksum,
  14540. feature.type_id,
  14541. feature.is_analysis,
  14542. feature.is_obsolete,
  14543. feature.timeaccessioned,
  14544. feature.timelastmodified
  14545. FROM (feature
  14546. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14547. WHERE ((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text);
  14548. --
  14549. -- Name: elongated_in_frame_polypeptide_n_terminal_elongation; Type: VIEW; Schema: so; Owner: -
  14550. --
  14551. CREATE VIEW elongated_in_frame_polypeptide_n_terminal_elongation AS
  14552. SELECT feature.feature_id AS elongated_in_frame_polypeptide_n_terminal_elongation_id,
  14553. feature.feature_id,
  14554. feature.dbxref_id,
  14555. feature.organism_id,
  14556. feature.name,
  14557. feature.uniquename,
  14558. feature.residues,
  14559. feature.seqlen,
  14560. feature.md5checksum,
  14561. feature.type_id,
  14562. feature.is_analysis,
  14563. feature.is_obsolete,
  14564. feature.timeaccessioned,
  14565. feature.timelastmodified
  14566. FROM (feature
  14567. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14568. WHERE ((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text);
  14569. --
  14570. -- Name: elongated_out_of_frame_polypeptide_c_terminal; Type: VIEW; Schema: so; Owner: -
  14571. --
  14572. CREATE VIEW elongated_out_of_frame_polypeptide_c_terminal AS
  14573. SELECT feature.feature_id AS elongated_out_of_frame_polypeptide_c_terminal_id,
  14574. feature.feature_id,
  14575. feature.dbxref_id,
  14576. feature.organism_id,
  14577. feature.name,
  14578. feature.uniquename,
  14579. feature.residues,
  14580. feature.seqlen,
  14581. feature.md5checksum,
  14582. feature.type_id,
  14583. feature.is_analysis,
  14584. feature.is_obsolete,
  14585. feature.timeaccessioned,
  14586. feature.timelastmodified
  14587. FROM (feature
  14588. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14589. WHERE ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text);
  14590. --
  14591. -- Name: elongated_out_of_frame_polypeptide_n_terminal; Type: VIEW; Schema: so; Owner: -
  14592. --
  14593. CREATE VIEW elongated_out_of_frame_polypeptide_n_terminal AS
  14594. SELECT feature.feature_id AS elongated_out_of_frame_polypeptide_n_terminal_id,
  14595. feature.feature_id,
  14596. feature.dbxref_id,
  14597. feature.organism_id,
  14598. feature.name,
  14599. feature.uniquename,
  14600. feature.residues,
  14601. feature.seqlen,
  14602. feature.md5checksum,
  14603. feature.type_id,
  14604. feature.is_analysis,
  14605. feature.is_obsolete,
  14606. feature.timeaccessioned,
  14607. feature.timelastmodified
  14608. FROM (feature
  14609. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14610. WHERE ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text);
  14611. --
  14612. -- Name: elongated_polypeptide; Type: VIEW; Schema: so; Owner: -
  14613. --
  14614. CREATE VIEW elongated_polypeptide AS
  14615. SELECT feature.feature_id AS elongated_polypeptide_id,
  14616. feature.feature_id,
  14617. feature.dbxref_id,
  14618. feature.organism_id,
  14619. feature.name,
  14620. feature.uniquename,
  14621. feature.residues,
  14622. feature.seqlen,
  14623. feature.md5checksum,
  14624. feature.type_id,
  14625. feature.is_analysis,
  14626. feature.is_obsolete,
  14627. feature.timeaccessioned,
  14628. feature.timelastmodified
  14629. FROM (feature
  14630. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14631. WHERE ((((((((cvterm.name)::text = 'elongated_polypeptide_C_terminal'::text) OR ((cvterm.name)::text = 'elongated_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide'::text));
  14632. --
  14633. -- Name: elongated_polypeptide_c_terminal; Type: VIEW; Schema: so; Owner: -
  14634. --
  14635. CREATE VIEW elongated_polypeptide_c_terminal AS
  14636. SELECT feature.feature_id AS elongated_polypeptide_c_terminal_id,
  14637. feature.feature_id,
  14638. feature.dbxref_id,
  14639. feature.organism_id,
  14640. feature.name,
  14641. feature.uniquename,
  14642. feature.residues,
  14643. feature.seqlen,
  14644. feature.md5checksum,
  14645. feature.type_id,
  14646. feature.is_analysis,
  14647. feature.is_obsolete,
  14648. feature.timeaccessioned,
  14649. feature.timelastmodified
  14650. FROM (feature
  14651. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14652. WHERE ((((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_C_terminal'::text));
  14653. --
  14654. -- Name: elongated_polypeptide_n_terminal; Type: VIEW; Schema: so; Owner: -
  14655. --
  14656. CREATE VIEW elongated_polypeptide_n_terminal AS
  14657. SELECT feature.feature_id AS elongated_polypeptide_n_terminal_id,
  14658. feature.feature_id,
  14659. feature.dbxref_id,
  14660. feature.organism_id,
  14661. feature.name,
  14662. feature.uniquename,
  14663. feature.residues,
  14664. feature.seqlen,
  14665. feature.md5checksum,
  14666. feature.type_id,
  14667. feature.is_analysis,
  14668. feature.is_obsolete,
  14669. feature.timeaccessioned,
  14670. feature.timelastmodified
  14671. FROM (feature
  14672. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14673. WHERE ((((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_N_terminal'::text));
  14674. --
  14675. -- Name: encodes_1_polypeptide; Type: VIEW; Schema: so; Owner: -
  14676. --
  14677. CREATE VIEW encodes_1_polypeptide AS
  14678. SELECT feature.feature_id AS encodes_1_polypeptide_id,
  14679. feature.feature_id,
  14680. feature.dbxref_id,
  14681. feature.organism_id,
  14682. feature.name,
  14683. feature.uniquename,
  14684. feature.residues,
  14685. feature.seqlen,
  14686. feature.md5checksum,
  14687. feature.type_id,
  14688. feature.is_analysis,
  14689. feature.is_obsolete,
  14690. feature.timeaccessioned,
  14691. feature.timelastmodified
  14692. FROM (feature
  14693. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14694. WHERE ((cvterm.name)::text = 'encodes_1_polypeptide'::text);
  14695. --
  14696. -- Name: encodes_alternate_transcription_start_sites; Type: VIEW; Schema: so; Owner: -
  14697. --
  14698. CREATE VIEW encodes_alternate_transcription_start_sites AS
  14699. SELECT feature.feature_id AS encodes_alternate_transcription_start_sites_id,
  14700. feature.feature_id,
  14701. feature.dbxref_id,
  14702. feature.organism_id,
  14703. feature.name,
  14704. feature.uniquename,
  14705. feature.residues,
  14706. feature.seqlen,
  14707. feature.md5checksum,
  14708. feature.type_id,
  14709. feature.is_analysis,
  14710. feature.is_obsolete,
  14711. feature.timeaccessioned,
  14712. feature.timelastmodified
  14713. FROM (feature
  14714. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14715. WHERE ((cvterm.name)::text = 'encodes_alternate_transcription_start_sites'::text);
  14716. --
  14717. -- Name: encodes_alternately_spliced_transcripts; Type: VIEW; Schema: so; Owner: -
  14718. --
  14719. CREATE VIEW encodes_alternately_spliced_transcripts AS
  14720. SELECT feature.feature_id AS encodes_alternately_spliced_transcripts_id,
  14721. feature.feature_id,
  14722. feature.dbxref_id,
  14723. feature.organism_id,
  14724. feature.name,
  14725. feature.uniquename,
  14726. feature.residues,
  14727. feature.seqlen,
  14728. feature.md5checksum,
  14729. feature.type_id,
  14730. feature.is_analysis,
  14731. feature.is_obsolete,
  14732. feature.timeaccessioned,
  14733. feature.timelastmodified
  14734. FROM (feature
  14735. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14736. WHERE (((((((((cvterm.name)::text = 'encodes_1_polypeptide'::text) OR ((cvterm.name)::text = 'encodes_greater_than_1_polypeptide'::text)) OR ((cvterm.name)::text = 'encodes_disjoint_polypeptides'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides'::text)) OR ((cvterm.name)::text = 'encodes_different_polypeptides_different_stop'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides_different_start'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_polypeptides_different_start_and_stop'::text)) OR ((cvterm.name)::text = 'encodes_alternately_spliced_transcripts'::text));
  14737. --
  14738. -- Name: encodes_different_polypeptides_different_stop; Type: VIEW; Schema: so; Owner: -
  14739. --
  14740. CREATE VIEW encodes_different_polypeptides_different_stop AS
  14741. SELECT feature.feature_id AS encodes_different_polypeptides_different_stop_id,
  14742. feature.feature_id,
  14743. feature.dbxref_id,
  14744. feature.organism_id,
  14745. feature.name,
  14746. feature.uniquename,
  14747. feature.residues,
  14748. feature.seqlen,
  14749. feature.md5checksum,
  14750. feature.type_id,
  14751. feature.is_analysis,
  14752. feature.is_obsolete,
  14753. feature.timeaccessioned,
  14754. feature.timelastmodified
  14755. FROM (feature
  14756. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14757. WHERE ((cvterm.name)::text = 'encodes_different_polypeptides_different_stop'::text);
  14758. --
  14759. -- Name: encodes_disjoint_polypeptides; Type: VIEW; Schema: so; Owner: -
  14760. --
  14761. CREATE VIEW encodes_disjoint_polypeptides AS
  14762. SELECT feature.feature_id AS encodes_disjoint_polypeptides_id,
  14763. feature.feature_id,
  14764. feature.dbxref_id,
  14765. feature.organism_id,
  14766. feature.name,
  14767. feature.uniquename,
  14768. feature.residues,
  14769. feature.seqlen,
  14770. feature.md5checksum,
  14771. feature.type_id,
  14772. feature.is_analysis,
  14773. feature.is_obsolete,
  14774. feature.timeaccessioned,
  14775. feature.timelastmodified
  14776. FROM (feature
  14777. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14778. WHERE ((cvterm.name)::text = 'encodes_disjoint_polypeptides'::text);
  14779. --
  14780. -- Name: encodes_greater_than_1_polypeptide; Type: VIEW; Schema: so; Owner: -
  14781. --
  14782. CREATE VIEW encodes_greater_than_1_polypeptide AS
  14783. SELECT feature.feature_id AS encodes_greater_than_1_polypeptide_id,
  14784. feature.feature_id,
  14785. feature.dbxref_id,
  14786. feature.organism_id,
  14787. feature.name,
  14788. feature.uniquename,
  14789. feature.residues,
  14790. feature.seqlen,
  14791. feature.md5checksum,
  14792. feature.type_id,
  14793. feature.is_analysis,
  14794. feature.is_obsolete,
  14795. feature.timeaccessioned,
  14796. feature.timelastmodified
  14797. FROM (feature
  14798. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14799. WHERE (((((((cvterm.name)::text = 'encodes_disjoint_polypeptides'::text) OR ((cvterm.name)::text = 'encodes_overlapping_peptides'::text)) OR ((cvterm.name)::text = 'encodes_different_polypeptides_different_stop'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides_different_start'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_polypeptides_different_start_and_stop'::text)) OR ((cvterm.name)::text = 'encodes_greater_than_1_polypeptide'::text));
  14800. --
  14801. -- Name: encodes_overlapping_peptides; Type: VIEW; Schema: so; Owner: -
  14802. --
  14803. CREATE VIEW encodes_overlapping_peptides AS
  14804. SELECT feature.feature_id AS encodes_overlapping_peptides_id,
  14805. feature.feature_id,
  14806. feature.dbxref_id,
  14807. feature.organism_id,
  14808. feature.name,
  14809. feature.uniquename,
  14810. feature.residues,
  14811. feature.seqlen,
  14812. feature.md5checksum,
  14813. feature.type_id,
  14814. feature.is_analysis,
  14815. feature.is_obsolete,
  14816. feature.timeaccessioned,
  14817. feature.timelastmodified
  14818. FROM (feature
  14819. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14820. WHERE (((((cvterm.name)::text = 'encodes_different_polypeptides_different_stop'::text) OR ((cvterm.name)::text = 'encodes_overlapping_peptides_different_start'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_polypeptides_different_start_and_stop'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides'::text));
  14821. --
  14822. -- Name: encodes_overlapping_peptides_different_start; Type: VIEW; Schema: so; Owner: -
  14823. --
  14824. CREATE VIEW encodes_overlapping_peptides_different_start AS
  14825. SELECT feature.feature_id AS encodes_overlapping_peptides_different_start_id,
  14826. feature.feature_id,
  14827. feature.dbxref_id,
  14828. feature.organism_id,
  14829. feature.name,
  14830. feature.uniquename,
  14831. feature.residues,
  14832. feature.seqlen,
  14833. feature.md5checksum,
  14834. feature.type_id,
  14835. feature.is_analysis,
  14836. feature.is_obsolete,
  14837. feature.timeaccessioned,
  14838. feature.timelastmodified
  14839. FROM (feature
  14840. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14841. WHERE ((cvterm.name)::text = 'encodes_overlapping_peptides_different_start'::text);
  14842. --
  14843. -- Name: encodes_overlapping_polypeptides_different_start_and_stop; Type: VIEW; Schema: so; Owner: -
  14844. --
  14845. CREATE VIEW encodes_overlapping_polypeptides_different_start_and_stop AS
  14846. SELECT feature.feature_id AS encodes_overlapping_polypeptides_different_start_and_stop_id,
  14847. feature.feature_id,
  14848. feature.dbxref_id,
  14849. feature.organism_id,
  14850. feature.name,
  14851. feature.uniquename,
  14852. feature.residues,
  14853. feature.seqlen,
  14854. feature.md5checksum,
  14855. feature.type_id,
  14856. feature.is_analysis,
  14857. feature.is_obsolete,
  14858. feature.timeaccessioned,
  14859. feature.timelastmodified
  14860. FROM (feature
  14861. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14862. WHERE ((cvterm.name)::text = 'encodes_overlapping_polypeptides_different_start_and_stop'::text);
  14863. --
  14864. -- Name: endogenous_retroviral_gene; Type: VIEW; Schema: so; Owner: -
  14865. --
  14866. CREATE VIEW endogenous_retroviral_gene AS
  14867. SELECT feature.feature_id AS endogenous_retroviral_gene_id,
  14868. feature.feature_id,
  14869. feature.dbxref_id,
  14870. feature.organism_id,
  14871. feature.name,
  14872. feature.uniquename,
  14873. feature.residues,
  14874. feature.seqlen,
  14875. feature.md5checksum,
  14876. feature.type_id,
  14877. feature.is_analysis,
  14878. feature.is_obsolete,
  14879. feature.timeaccessioned,
  14880. feature.timelastmodified
  14881. FROM (feature
  14882. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14883. WHERE ((cvterm.name)::text = 'endogenous_retroviral_gene'::text);
  14884. --
  14885. -- Name: endogenous_retroviral_sequence; Type: VIEW; Schema: so; Owner: -
  14886. --
  14887. CREATE VIEW endogenous_retroviral_sequence AS
  14888. SELECT feature.feature_id AS endogenous_retroviral_sequence_id,
  14889. feature.feature_id,
  14890. feature.dbxref_id,
  14891. feature.organism_id,
  14892. feature.name,
  14893. feature.uniquename,
  14894. feature.residues,
  14895. feature.seqlen,
  14896. feature.md5checksum,
  14897. feature.type_id,
  14898. feature.is_analysis,
  14899. feature.is_obsolete,
  14900. feature.timeaccessioned,
  14901. feature.timelastmodified
  14902. FROM (feature
  14903. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14904. WHERE ((cvterm.name)::text = 'endogenous_retroviral_sequence'::text);
  14905. --
  14906. -- Name: endonuclease_spliced_intron; Type: VIEW; Schema: so; Owner: -
  14907. --
  14908. CREATE VIEW endonuclease_spliced_intron AS
  14909. SELECT feature.feature_id AS endonuclease_spliced_intron_id,
  14910. feature.feature_id,
  14911. feature.dbxref_id,
  14912. feature.organism_id,
  14913. feature.name,
  14914. feature.uniquename,
  14915. feature.residues,
  14916. feature.seqlen,
  14917. feature.md5checksum,
  14918. feature.type_id,
  14919. feature.is_analysis,
  14920. feature.is_obsolete,
  14921. feature.timeaccessioned,
  14922. feature.timelastmodified
  14923. FROM (feature
  14924. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14925. WHERE ((((cvterm.name)::text = 'archaeal_intron'::text) OR ((cvterm.name)::text = 'tRNA_intron'::text)) OR ((cvterm.name)::text = 'endonuclease_spliced_intron'::text));
  14926. --
  14927. -- Name: endosomal_localization_signal; Type: VIEW; Schema: so; Owner: -
  14928. --
  14929. CREATE VIEW endosomal_localization_signal AS
  14930. SELECT feature.feature_id AS endosomal_localization_signal_id,
  14931. feature.feature_id,
  14932. feature.dbxref_id,
  14933. feature.organism_id,
  14934. feature.name,
  14935. feature.uniquename,
  14936. feature.residues,
  14937. feature.seqlen,
  14938. feature.md5checksum,
  14939. feature.type_id,
  14940. feature.is_analysis,
  14941. feature.is_obsolete,
  14942. feature.timeaccessioned,
  14943. feature.timelastmodified
  14944. FROM (feature
  14945. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14946. WHERE ((cvterm.name)::text = 'endosomal_localization_signal'::text);
  14947. --
  14948. -- Name: engineered; Type: VIEW; Schema: so; Owner: -
  14949. --
  14950. CREATE VIEW engineered AS
  14951. SELECT feature.feature_id AS engineered_id,
  14952. feature.feature_id,
  14953. feature.dbxref_id,
  14954. feature.organism_id,
  14955. feature.name,
  14956. feature.uniquename,
  14957. feature.residues,
  14958. feature.seqlen,
  14959. feature.md5checksum,
  14960. feature.type_id,
  14961. feature.is_analysis,
  14962. feature.is_obsolete,
  14963. feature.timeaccessioned,
  14964. feature.timelastmodified
  14965. FROM (feature
  14966. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14967. WHERE ((cvterm.name)::text = 'engineered'::text);
  14968. --
  14969. -- Name: engineered_episome; Type: VIEW; Schema: so; Owner: -
  14970. --
  14971. CREATE VIEW engineered_episome AS
  14972. SELECT feature.feature_id AS engineered_episome_id,
  14973. feature.feature_id,
  14974. feature.dbxref_id,
  14975. feature.organism_id,
  14976. feature.name,
  14977. feature.uniquename,
  14978. feature.residues,
  14979. feature.seqlen,
  14980. feature.md5checksum,
  14981. feature.type_id,
  14982. feature.is_analysis,
  14983. feature.is_obsolete,
  14984. feature.timeaccessioned,
  14985. feature.timelastmodified
  14986. FROM (feature
  14987. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  14988. WHERE ((cvterm.name)::text = 'engineered_episome'::text);
  14989. --
  14990. -- Name: engineered_foreign_gene; Type: VIEW; Schema: so; Owner: -
  14991. --
  14992. CREATE VIEW engineered_foreign_gene AS
  14993. SELECT feature.feature_id AS engineered_foreign_gene_id,
  14994. feature.feature_id,
  14995. feature.dbxref_id,
  14996. feature.organism_id,
  14997. feature.name,
  14998. feature.uniquename,
  14999. feature.residues,
  15000. feature.seqlen,
  15001. feature.md5checksum,
  15002. feature.type_id,
  15003. feature.is_analysis,
  15004. feature.is_obsolete,
  15005. feature.timeaccessioned,
  15006. feature.timelastmodified
  15007. FROM (feature
  15008. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15009. WHERE (((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text));
  15010. --
  15011. -- Name: engineered_foreign_region; Type: VIEW; Schema: so; Owner: -
  15012. --
  15013. CREATE VIEW engineered_foreign_region AS
  15014. SELECT feature.feature_id AS engineered_foreign_region_id,
  15015. feature.feature_id,
  15016. feature.dbxref_id,
  15017. feature.organism_id,
  15018. feature.name,
  15019. feature.uniquename,
  15020. feature.residues,
  15021. feature.seqlen,
  15022. feature.md5checksum,
  15023. feature.type_id,
  15024. feature.is_analysis,
  15025. feature.is_obsolete,
  15026. feature.timeaccessioned,
  15027. feature.timelastmodified
  15028. FROM (feature
  15029. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15030. WHERE ((((((cvterm.name)::text = 'engineered_foreign_gene'::text) OR ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_region'::text));
  15031. --
  15032. -- Name: engineered_foreign_repetitive_element; Type: VIEW; Schema: so; Owner: -
  15033. --
  15034. CREATE VIEW engineered_foreign_repetitive_element AS
  15035. SELECT feature.feature_id AS engineered_foreign_repetitive_element_id,
  15036. feature.feature_id,
  15037. feature.dbxref_id,
  15038. feature.organism_id,
  15039. feature.name,
  15040. feature.uniquename,
  15041. feature.residues,
  15042. feature.seqlen,
  15043. feature.md5checksum,
  15044. feature.type_id,
  15045. feature.is_analysis,
  15046. feature.is_obsolete,
  15047. feature.timeaccessioned,
  15048. feature.timelastmodified
  15049. FROM (feature
  15050. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15051. WHERE ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text);
  15052. --
  15053. -- Name: engineered_foreign_transposable_element; Type: VIEW; Schema: so; Owner: -
  15054. --
  15055. CREATE VIEW engineered_foreign_transposable_element AS
  15056. SELECT feature.feature_id AS engineered_foreign_transposable_element_id,
  15057. feature.feature_id,
  15058. feature.dbxref_id,
  15059. feature.organism_id,
  15060. feature.name,
  15061. feature.uniquename,
  15062. feature.residues,
  15063. feature.seqlen,
  15064. feature.md5checksum,
  15065. feature.type_id,
  15066. feature.is_analysis,
  15067. feature.is_obsolete,
  15068. feature.timeaccessioned,
  15069. feature.timelastmodified
  15070. FROM (feature
  15071. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15072. WHERE ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text);
  15073. --
  15074. -- Name: engineered_foreign_transposable_element_gene; Type: VIEW; Schema: so; Owner: -
  15075. --
  15076. CREATE VIEW engineered_foreign_transposable_element_gene AS
  15077. SELECT feature.feature_id AS engineered_foreign_transposable_element_gene_id,
  15078. feature.feature_id,
  15079. feature.dbxref_id,
  15080. feature.organism_id,
  15081. feature.name,
  15082. feature.uniquename,
  15083. feature.residues,
  15084. feature.seqlen,
  15085. feature.md5checksum,
  15086. feature.type_id,
  15087. feature.is_analysis,
  15088. feature.is_obsolete,
  15089. feature.timeaccessioned,
  15090. feature.timelastmodified
  15091. FROM (feature
  15092. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15093. WHERE ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text);
  15094. --
  15095. -- Name: engineered_fusion_gene; Type: VIEW; Schema: so; Owner: -
  15096. --
  15097. CREATE VIEW engineered_fusion_gene AS
  15098. SELECT feature.feature_id AS engineered_fusion_gene_id,
  15099. feature.feature_id,
  15100. feature.dbxref_id,
  15101. feature.organism_id,
  15102. feature.name,
  15103. feature.uniquename,
  15104. feature.residues,
  15105. feature.seqlen,
  15106. feature.md5checksum,
  15107. feature.type_id,
  15108. feature.is_analysis,
  15109. feature.is_obsolete,
  15110. feature.timeaccessioned,
  15111. feature.timelastmodified
  15112. FROM (feature
  15113. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15114. WHERE ((cvterm.name)::text = 'engineered_fusion_gene'::text);
  15115. --
  15116. -- Name: engineered_gene; Type: VIEW; Schema: so; Owner: -
  15117. --
  15118. CREATE VIEW engineered_gene AS
  15119. SELECT feature.feature_id AS engineered_gene_id,
  15120. feature.feature_id,
  15121. feature.dbxref_id,
  15122. feature.organism_id,
  15123. feature.name,
  15124. feature.uniquename,
  15125. feature.residues,
  15126. feature.seqlen,
  15127. feature.md5checksum,
  15128. feature.type_id,
  15129. feature.is_analysis,
  15130. feature.is_obsolete,
  15131. feature.timeaccessioned,
  15132. feature.timelastmodified
  15133. FROM (feature
  15134. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15135. WHERE (((((cvterm.name)::text = 'engineered_foreign_gene'::text) OR ((cvterm.name)::text = 'engineered_fusion_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_gene'::text));
  15136. --
  15137. -- Name: engineered_insert; Type: VIEW; Schema: so; Owner: -
  15138. --
  15139. CREATE VIEW engineered_insert AS
  15140. SELECT feature.feature_id AS engineered_insert_id,
  15141. feature.feature_id,
  15142. feature.dbxref_id,
  15143. feature.organism_id,
  15144. feature.name,
  15145. feature.uniquename,
  15146. feature.residues,
  15147. feature.seqlen,
  15148. feature.md5checksum,
  15149. feature.type_id,
  15150. feature.is_analysis,
  15151. feature.is_obsolete,
  15152. feature.timeaccessioned,
  15153. feature.timelastmodified
  15154. FROM (feature
  15155. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15156. WHERE ((cvterm.name)::text = 'engineered_insert'::text);
  15157. --
  15158. -- Name: engineered_plasmid; Type: VIEW; Schema: so; Owner: -
  15159. --
  15160. CREATE VIEW engineered_plasmid AS
  15161. SELECT feature.feature_id AS engineered_plasmid_id,
  15162. feature.feature_id,
  15163. feature.dbxref_id,
  15164. feature.organism_id,
  15165. feature.name,
  15166. feature.uniquename,
  15167. feature.residues,
  15168. feature.seqlen,
  15169. feature.md5checksum,
  15170. feature.type_id,
  15171. feature.is_analysis,
  15172. feature.is_obsolete,
  15173. feature.timeaccessioned,
  15174. feature.timelastmodified
  15175. FROM (feature
  15176. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15177. WHERE ((((((cvterm.name)::text = 'engineered_episome'::text) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_plasmid'::text));
  15178. --
  15179. -- Name: engineered_region; Type: VIEW; Schema: so; Owner: -
  15180. --
  15181. CREATE VIEW engineered_region AS
  15182. SELECT feature.feature_id AS engineered_region_id,
  15183. feature.feature_id,
  15184. feature.dbxref_id,
  15185. feature.organism_id,
  15186. feature.name,
  15187. feature.uniquename,
  15188. feature.residues,
  15189. feature.seqlen,
  15190. feature.md5checksum,
  15191. feature.type_id,
  15192. feature.is_analysis,
  15193. feature.is_obsolete,
  15194. feature.timeaccessioned,
  15195. feature.timelastmodified
  15196. FROM (feature
  15197. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15198. WHERE ((((((((((((((((((((((cvterm.name)::text = 'engineered_gene'::text) OR ((cvterm.name)::text = 'engineered_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_region'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_fusion_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_region'::text));
  15199. --
  15200. -- Name: engineered_rescue_region; Type: VIEW; Schema: so; Owner: -
  15201. --
  15202. CREATE VIEW engineered_rescue_region AS
  15203. SELECT feature.feature_id AS engineered_rescue_region_id,
  15204. feature.feature_id,
  15205. feature.dbxref_id,
  15206. feature.organism_id,
  15207. feature.name,
  15208. feature.uniquename,
  15209. feature.residues,
  15210. feature.seqlen,
  15211. feature.md5checksum,
  15212. feature.type_id,
  15213. feature.is_analysis,
  15214. feature.is_obsolete,
  15215. feature.timeaccessioned,
  15216. feature.timelastmodified
  15217. FROM (feature
  15218. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15219. WHERE ((cvterm.name)::text = 'engineered_rescue_region'::text);
  15220. --
  15221. -- Name: engineered_tag; Type: VIEW; Schema: so; Owner: -
  15222. --
  15223. CREATE VIEW engineered_tag AS
  15224. SELECT feature.feature_id AS engineered_tag_id,
  15225. feature.feature_id,
  15226. feature.dbxref_id,
  15227. feature.organism_id,
  15228. feature.name,
  15229. feature.uniquename,
  15230. feature.residues,
  15231. feature.seqlen,
  15232. feature.md5checksum,
  15233. feature.type_id,
  15234. feature.is_analysis,
  15235. feature.is_obsolete,
  15236. feature.timeaccessioned,
  15237. feature.timelastmodified
  15238. FROM (feature
  15239. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15240. WHERE ((cvterm.name)::text = 'engineered_tag'::text);
  15241. --
  15242. -- Name: engineered_transposable_element; Type: VIEW; Schema: so; Owner: -
  15243. --
  15244. CREATE VIEW engineered_transposable_element AS
  15245. SELECT feature.feature_id AS engineered_transposable_element_id,
  15246. feature.feature_id,
  15247. feature.dbxref_id,
  15248. feature.organism_id,
  15249. feature.name,
  15250. feature.uniquename,
  15251. feature.residues,
  15252. feature.seqlen,
  15253. feature.md5checksum,
  15254. feature.type_id,
  15255. feature.is_analysis,
  15256. feature.is_obsolete,
  15257. feature.timeaccessioned,
  15258. feature.timelastmodified
  15259. FROM (feature
  15260. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15261. WHERE (((cvterm.name)::text = 'engineered_foreign_transposable_element'::text) OR ((cvterm.name)::text = 'engineered_transposable_element'::text));
  15262. --
  15263. -- Name: enhancer; Type: VIEW; Schema: so; Owner: -
  15264. --
  15265. CREATE VIEW enhancer AS
  15266. SELECT feature.feature_id AS enhancer_id,
  15267. feature.feature_id,
  15268. feature.dbxref_id,
  15269. feature.organism_id,
  15270. feature.name,
  15271. feature.uniquename,
  15272. feature.residues,
  15273. feature.seqlen,
  15274. feature.md5checksum,
  15275. feature.type_id,
  15276. feature.is_analysis,
  15277. feature.is_obsolete,
  15278. feature.timeaccessioned,
  15279. feature.timelastmodified
  15280. FROM (feature
  15281. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15282. WHERE ((((cvterm.name)::text = 'enhancer_bound_by_factor'::text) OR ((cvterm.name)::text = 'shadow_enhancer'::text)) OR ((cvterm.name)::text = 'enhancer'::text));
  15283. --
  15284. -- Name: enhancer_binding_site; Type: VIEW; Schema: so; Owner: -
  15285. --
  15286. CREATE VIEW enhancer_binding_site AS
  15287. SELECT feature.feature_id AS enhancer_binding_site_id,
  15288. feature.feature_id,
  15289. feature.dbxref_id,
  15290. feature.organism_id,
  15291. feature.name,
  15292. feature.uniquename,
  15293. feature.residues,
  15294. feature.seqlen,
  15295. feature.md5checksum,
  15296. feature.type_id,
  15297. feature.is_analysis,
  15298. feature.is_obsolete,
  15299. feature.timeaccessioned,
  15300. feature.timelastmodified
  15301. FROM (feature
  15302. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15303. WHERE ((cvterm.name)::text = 'enhancer_binding_site'::text);
  15304. --
  15305. -- Name: enhancer_bound_by_factor; Type: VIEW; Schema: so; Owner: -
  15306. --
  15307. CREATE VIEW enhancer_bound_by_factor AS
  15308. SELECT feature.feature_id AS enhancer_bound_by_factor_id,
  15309. feature.feature_id,
  15310. feature.dbxref_id,
  15311. feature.organism_id,
  15312. feature.name,
  15313. feature.uniquename,
  15314. feature.residues,
  15315. feature.seqlen,
  15316. feature.md5checksum,
  15317. feature.type_id,
  15318. feature.is_analysis,
  15319. feature.is_obsolete,
  15320. feature.timeaccessioned,
  15321. feature.timelastmodified
  15322. FROM (feature
  15323. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15324. WHERE ((cvterm.name)::text = 'enhancer_bound_by_factor'::text);
  15325. --
  15326. -- Name: enhancer_trap_construct; Type: VIEW; Schema: so; Owner: -
  15327. --
  15328. CREATE VIEW enhancer_trap_construct AS
  15329. SELECT feature.feature_id AS enhancer_trap_construct_id,
  15330. feature.feature_id,
  15331. feature.dbxref_id,
  15332. feature.organism_id,
  15333. feature.name,
  15334. feature.uniquename,
  15335. feature.residues,
  15336. feature.seqlen,
  15337. feature.md5checksum,
  15338. feature.type_id,
  15339. feature.is_analysis,
  15340. feature.is_obsolete,
  15341. feature.timeaccessioned,
  15342. feature.timelastmodified
  15343. FROM (feature
  15344. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15345. WHERE ((cvterm.name)::text = 'enhancer_trap_construct'::text);
  15346. --
  15347. -- Name: enzymatic; Type: VIEW; Schema: so; Owner: -
  15348. --
  15349. CREATE VIEW enzymatic AS
  15350. SELECT feature.feature_id AS enzymatic_id,
  15351. feature.feature_id,
  15352. feature.dbxref_id,
  15353. feature.organism_id,
  15354. feature.name,
  15355. feature.uniquename,
  15356. feature.residues,
  15357. feature.seqlen,
  15358. feature.md5checksum,
  15359. feature.type_id,
  15360. feature.is_analysis,
  15361. feature.is_obsolete,
  15362. feature.timeaccessioned,
  15363. feature.timelastmodified
  15364. FROM (feature
  15365. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15366. WHERE (((cvterm.name)::text = 'ribozymic'::text) OR ((cvterm.name)::text = 'enzymatic'::text));
  15367. --
  15368. -- Name: enzymatic_rna; Type: VIEW; Schema: so; Owner: -
  15369. --
  15370. CREATE VIEW enzymatic_rna AS
  15371. SELECT feature.feature_id AS enzymatic_rna_id,
  15372. feature.feature_id,
  15373. feature.dbxref_id,
  15374. feature.organism_id,
  15375. feature.name,
  15376. feature.uniquename,
  15377. feature.residues,
  15378. feature.seqlen,
  15379. feature.md5checksum,
  15380. feature.type_id,
  15381. feature.is_analysis,
  15382. feature.is_obsolete,
  15383. feature.timeaccessioned,
  15384. feature.timelastmodified
  15385. FROM (feature
  15386. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15387. WHERE (((cvterm.name)::text = 'ribozyme'::text) OR ((cvterm.name)::text = 'enzymatic_RNA'::text));
  15388. --
  15389. -- Name: epigenetically_modified; Type: VIEW; Schema: so; Owner: -
  15390. --
  15391. CREATE VIEW epigenetically_modified AS
  15392. SELECT feature.feature_id AS epigenetically_modified_id,
  15393. feature.feature_id,
  15394. feature.dbxref_id,
  15395. feature.organism_id,
  15396. feature.name,
  15397. feature.uniquename,
  15398. feature.residues,
  15399. feature.seqlen,
  15400. feature.md5checksum,
  15401. feature.type_id,
  15402. feature.is_analysis,
  15403. feature.is_obsolete,
  15404. feature.timeaccessioned,
  15405. feature.timelastmodified
  15406. FROM (feature
  15407. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15408. WHERE (((((((cvterm.name)::text = 'imprinted'::text) OR ((cvterm.name)::text = 'allelically_excluded'::text)) OR ((cvterm.name)::text = 'rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'epigenetically_modified'::text));
  15409. --
  15410. -- Name: epigenetically_modified_gene; Type: VIEW; Schema: so; Owner: -
  15411. --
  15412. CREATE VIEW epigenetically_modified_gene AS
  15413. SELECT feature.feature_id AS epigenetically_modified_gene_id,
  15414. feature.feature_id,
  15415. feature.dbxref_id,
  15416. feature.organism_id,
  15417. feature.name,
  15418. feature.uniquename,
  15419. feature.residues,
  15420. feature.seqlen,
  15421. feature.md5checksum,
  15422. feature.type_id,
  15423. feature.is_analysis,
  15424. feature.is_obsolete,
  15425. feature.timeaccessioned,
  15426. feature.timelastmodified
  15427. FROM (feature
  15428. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15429. WHERE ((((((cvterm.name)::text = 'gene_rearranged_at_DNA_level'::text) OR ((cvterm.name)::text = 'maternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'paternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'allelically_excluded_gene'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_gene'::text));
  15430. --
  15431. -- Name: epigenetically_modified_region; Type: VIEW; Schema: so; Owner: -
  15432. --
  15433. CREATE VIEW epigenetically_modified_region AS
  15434. SELECT feature.feature_id AS epigenetically_modified_region_id,
  15435. feature.feature_id,
  15436. feature.dbxref_id,
  15437. feature.organism_id,
  15438. feature.name,
  15439. feature.uniquename,
  15440. feature.residues,
  15441. feature.seqlen,
  15442. feature.md5checksum,
  15443. feature.type_id,
  15444. feature.is_analysis,
  15445. feature.is_obsolete,
  15446. feature.timeaccessioned,
  15447. feature.timelastmodified
  15448. FROM (feature
  15449. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15450. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'modified_base'::text) OR ((cvterm.name)::text = 'epigenetically_modified_gene'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'methylated_base_feature'::text)) OR ((cvterm.name)::text = 'methylated_C'::text)) OR ((cvterm.name)::text = 'methylated_A'::text)) OR ((cvterm.name)::text = 'gene_rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'paternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'allelically_excluded_gene'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_region'::text));
  15451. --
  15452. -- Name: episome; Type: VIEW; Schema: so; Owner: -
  15453. --
  15454. CREATE VIEW episome AS
  15455. SELECT feature.feature_id AS episome_id,
  15456. feature.feature_id,
  15457. feature.dbxref_id,
  15458. feature.organism_id,
  15459. feature.name,
  15460. feature.uniquename,
  15461. feature.residues,
  15462. feature.seqlen,
  15463. feature.md5checksum,
  15464. feature.type_id,
  15465. feature.is_analysis,
  15466. feature.is_obsolete,
  15467. feature.timeaccessioned,
  15468. feature.timelastmodified
  15469. FROM (feature
  15470. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15471. WHERE (((cvterm.name)::text = 'engineered_episome'::text) OR ((cvterm.name)::text = 'episome'::text));
  15472. --
  15473. -- Name: epitope; Type: VIEW; Schema: so; Owner: -
  15474. --
  15475. CREATE VIEW epitope AS
  15476. SELECT feature.feature_id AS epitope_id,
  15477. feature.feature_id,
  15478. feature.dbxref_id,
  15479. feature.organism_id,
  15480. feature.name,
  15481. feature.uniquename,
  15482. feature.residues,
  15483. feature.seqlen,
  15484. feature.md5checksum,
  15485. feature.type_id,
  15486. feature.is_analysis,
  15487. feature.is_obsolete,
  15488. feature.timeaccessioned,
  15489. feature.timelastmodified
  15490. FROM (feature
  15491. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15492. WHERE ((cvterm.name)::text = 'epitope'::text);
  15493. --
  15494. -- Name: epoxyqueuosine; Type: VIEW; Schema: so; Owner: -
  15495. --
  15496. CREATE VIEW epoxyqueuosine AS
  15497. SELECT feature.feature_id AS epoxyqueuosine_id,
  15498. feature.feature_id,
  15499. feature.dbxref_id,
  15500. feature.organism_id,
  15501. feature.name,
  15502. feature.uniquename,
  15503. feature.residues,
  15504. feature.seqlen,
  15505. feature.md5checksum,
  15506. feature.type_id,
  15507. feature.is_analysis,
  15508. feature.is_obsolete,
  15509. feature.timeaccessioned,
  15510. feature.timelastmodified
  15511. FROM (feature
  15512. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15513. WHERE ((cvterm.name)::text = 'epoxyqueuosine'::text);
  15514. --
  15515. -- Name: est; Type: VIEW; Schema: so; Owner: -
  15516. --
  15517. CREATE VIEW est AS
  15518. SELECT feature.feature_id AS est_id,
  15519. feature.feature_id,
  15520. feature.dbxref_id,
  15521. feature.organism_id,
  15522. feature.name,
  15523. feature.uniquename,
  15524. feature.residues,
  15525. feature.seqlen,
  15526. feature.md5checksum,
  15527. feature.type_id,
  15528. feature.is_analysis,
  15529. feature.is_obsolete,
  15530. feature.timeaccessioned,
  15531. feature.timelastmodified
  15532. FROM (feature
  15533. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15534. WHERE ((((((((((cvterm.name)::text = 'five_prime_EST'::text) OR ((cvterm.name)::text = 'three_prime_EST'::text)) OR ((cvterm.name)::text = 'UST'::text)) OR ((cvterm.name)::text = 'RST'::text)) OR ((cvterm.name)::text = 'three_prime_UST'::text)) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'three_prime_RST'::text)) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'EST'::text));
  15535. --
  15536. -- Name: est_match; Type: VIEW; Schema: so; Owner: -
  15537. --
  15538. CREATE VIEW est_match AS
  15539. SELECT feature.feature_id AS est_match_id,
  15540. feature.feature_id,
  15541. feature.dbxref_id,
  15542. feature.organism_id,
  15543. feature.name,
  15544. feature.uniquename,
  15545. feature.residues,
  15546. feature.seqlen,
  15547. feature.md5checksum,
  15548. feature.type_id,
  15549. feature.is_analysis,
  15550. feature.is_obsolete,
  15551. feature.timeaccessioned,
  15552. feature.timelastmodified
  15553. FROM (feature
  15554. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15555. WHERE ((cvterm.name)::text = 'EST_match'::text);
  15556. --
  15557. -- Name: eukaryotic_terminator; Type: VIEW; Schema: so; Owner: -
  15558. --
  15559. CREATE VIEW eukaryotic_terminator AS
  15560. SELECT feature.feature_id AS eukaryotic_terminator_id,
  15561. feature.feature_id,
  15562. feature.dbxref_id,
  15563. feature.organism_id,
  15564. feature.name,
  15565. feature.uniquename,
  15566. feature.residues,
  15567. feature.seqlen,
  15568. feature.md5checksum,
  15569. feature.type_id,
  15570. feature.is_analysis,
  15571. feature.is_obsolete,
  15572. feature.timeaccessioned,
  15573. feature.timelastmodified
  15574. FROM (feature
  15575. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15576. WHERE (((cvterm.name)::text = 'terminator_of_type_2_RNApol_III_promoter'::text) OR ((cvterm.name)::text = 'eukaryotic_terminator'::text));
  15577. --
  15578. -- Name: exemplar; Type: VIEW; Schema: so; Owner: -
  15579. --
  15580. CREATE VIEW exemplar AS
  15581. SELECT feature.feature_id AS exemplar_id,
  15582. feature.feature_id,
  15583. feature.dbxref_id,
  15584. feature.organism_id,
  15585. feature.name,
  15586. feature.uniquename,
  15587. feature.residues,
  15588. feature.seqlen,
  15589. feature.md5checksum,
  15590. feature.type_id,
  15591. feature.is_analysis,
  15592. feature.is_obsolete,
  15593. feature.timeaccessioned,
  15594. feature.timelastmodified
  15595. FROM (feature
  15596. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15597. WHERE ((cvterm.name)::text = 'exemplar'::text);
  15598. --
  15599. -- Name: exemplar_mrna; Type: VIEW; Schema: so; Owner: -
  15600. --
  15601. CREATE VIEW exemplar_mrna AS
  15602. SELECT feature.feature_id AS exemplar_mrna_id,
  15603. feature.feature_id,
  15604. feature.dbxref_id,
  15605. feature.organism_id,
  15606. feature.name,
  15607. feature.uniquename,
  15608. feature.residues,
  15609. feature.seqlen,
  15610. feature.md5checksum,
  15611. feature.type_id,
  15612. feature.is_analysis,
  15613. feature.is_obsolete,
  15614. feature.timeaccessioned,
  15615. feature.timelastmodified
  15616. FROM (feature
  15617. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15618. WHERE ((cvterm.name)::text = 'exemplar_mRNA'::text);
  15619. --
  15620. -- Name: exon; Type: VIEW; Schema: so; Owner: -
  15621. --
  15622. CREATE VIEW exon AS
  15623. SELECT feature.feature_id AS exon_id,
  15624. feature.feature_id,
  15625. feature.dbxref_id,
  15626. feature.organism_id,
  15627. feature.name,
  15628. feature.uniquename,
  15629. feature.residues,
  15630. feature.seqlen,
  15631. feature.md5checksum,
  15632. feature.type_id,
  15633. feature.is_analysis,
  15634. feature.is_obsolete,
  15635. feature.timeaccessioned,
  15636. feature.timelastmodified
  15637. FROM (feature
  15638. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15639. WHERE (((((((((((cvterm.name)::text = 'coding_exon'::text) OR ((cvterm.name)::text = 'noncoding_exon'::text)) OR ((cvterm.name)::text = 'interior_exon'::text)) OR ((cvterm.name)::text = 'exon_of_single_exon_gene'::text)) OR ((cvterm.name)::text = 'interior_coding_exon'::text)) OR ((cvterm.name)::text = 'five_prime_coding_exon'::text)) OR ((cvterm.name)::text = 'three_prime_coding_exon'::text)) OR ((cvterm.name)::text = 'three_prime_noncoding_exon'::text)) OR ((cvterm.name)::text = 'five_prime_noncoding_exon'::text)) OR ((cvterm.name)::text = 'exon'::text));
  15640. --
  15641. -- Name: exon_junction; Type: VIEW; Schema: so; Owner: -
  15642. --
  15643. CREATE VIEW exon_junction AS
  15644. SELECT feature.feature_id AS exon_junction_id,
  15645. feature.feature_id,
  15646. feature.dbxref_id,
  15647. feature.organism_id,
  15648. feature.name,
  15649. feature.uniquename,
  15650. feature.residues,
  15651. feature.seqlen,
  15652. feature.md5checksum,
  15653. feature.type_id,
  15654. feature.is_analysis,
  15655. feature.is_obsolete,
  15656. feature.timeaccessioned,
  15657. feature.timelastmodified
  15658. FROM (feature
  15659. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15660. WHERE ((cvterm.name)::text = 'exon_junction'::text);
  15661. --
  15662. -- Name: exon_loss; Type: VIEW; Schema: so; Owner: -
  15663. --
  15664. CREATE VIEW exon_loss AS
  15665. SELECT feature.feature_id AS exon_loss_id,
  15666. feature.feature_id,
  15667. feature.dbxref_id,
  15668. feature.organism_id,
  15669. feature.name,
  15670. feature.uniquename,
  15671. feature.residues,
  15672. feature.seqlen,
  15673. feature.md5checksum,
  15674. feature.type_id,
  15675. feature.is_analysis,
  15676. feature.is_obsolete,
  15677. feature.timeaccessioned,
  15678. feature.timelastmodified
  15679. FROM (feature
  15680. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15681. WHERE ((cvterm.name)::text = 'exon_loss'::text);
  15682. --
  15683. -- Name: exon_of_single_exon_gene; Type: VIEW; Schema: so; Owner: -
  15684. --
  15685. CREATE VIEW exon_of_single_exon_gene AS
  15686. SELECT feature.feature_id AS exon_of_single_exon_gene_id,
  15687. feature.feature_id,
  15688. feature.dbxref_id,
  15689. feature.organism_id,
  15690. feature.name,
  15691. feature.uniquename,
  15692. feature.residues,
  15693. feature.seqlen,
  15694. feature.md5checksum,
  15695. feature.type_id,
  15696. feature.is_analysis,
  15697. feature.is_obsolete,
  15698. feature.timeaccessioned,
  15699. feature.timelastmodified
  15700. FROM (feature
  15701. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15702. WHERE ((cvterm.name)::text = 'exon_of_single_exon_gene'::text);
  15703. --
  15704. -- Name: exon_region; Type: VIEW; Schema: so; Owner: -
  15705. --
  15706. CREATE VIEW exon_region AS
  15707. SELECT feature.feature_id AS exon_region_id,
  15708. feature.feature_id,
  15709. feature.dbxref_id,
  15710. feature.organism_id,
  15711. feature.name,
  15712. feature.uniquename,
  15713. feature.residues,
  15714. feature.seqlen,
  15715. feature.md5checksum,
  15716. feature.type_id,
  15717. feature.is_analysis,
  15718. feature.is_obsolete,
  15719. feature.timeaccessioned,
  15720. feature.timelastmodified
  15721. FROM (feature
  15722. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15723. WHERE ((((((((cvterm.name)::text = 'noncoding_region_of_exon'::text) OR ((cvterm.name)::text = 'coding_region_of_exon'::text)) OR ((cvterm.name)::text = 'three_prime_coding_exon_noncoding_region'::text)) OR ((cvterm.name)::text = 'five_prime_coding_exon_noncoding_region'::text)) OR ((cvterm.name)::text = 'five_prime_coding_exon_coding_region'::text)) OR ((cvterm.name)::text = 'three_prime_coding_exon_coding_region'::text)) OR ((cvterm.name)::text = 'exon_region'::text));
  15724. --
  15725. -- Name: exon_variant; Type: VIEW; Schema: so; Owner: -
  15726. --
  15727. CREATE VIEW exon_variant AS
  15728. SELECT feature.feature_id AS exon_variant_id,
  15729. feature.feature_id,
  15730. feature.dbxref_id,
  15731. feature.organism_id,
  15732. feature.name,
  15733. feature.uniquename,
  15734. feature.residues,
  15735. feature.seqlen,
  15736. feature.md5checksum,
  15737. feature.type_id,
  15738. feature.is_analysis,
  15739. feature.is_obsolete,
  15740. feature.timeaccessioned,
  15741. feature.timelastmodified
  15742. FROM (feature
  15743. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15744. WHERE ((((((((((((((((((((((((((cvterm.name)::text = 'coding_sequence_variant'::text) OR ((cvterm.name)::text = 'non_coding_exon_variant'::text)) OR ((cvterm.name)::text = 'codon_variant'::text)) OR ((cvterm.name)::text = 'frameshift_variant'::text)) OR ((cvterm.name)::text = 'inframe_variant'::text)) OR ((cvterm.name)::text = 'initiator_codon_change'::text)) OR ((cvterm.name)::text = 'non_synonymous_codon'::text)) OR ((cvterm.name)::text = 'synonymous_codon'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_gained'::text)) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text)) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'frame_restoring_variant'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_2_frameshift variant'::text)) OR ((cvterm.name)::text = 'inframe_codon_gain'::text)) OR ((cvterm.name)::text = 'inframe_codon_loss'::text)) OR ((cvterm.name)::text = 'exon_variant'::text));
  15745. --
  15746. -- Name: exonic_splice_enhancer; Type: VIEW; Schema: so; Owner: -
  15747. --
  15748. CREATE VIEW exonic_splice_enhancer AS
  15749. SELECT feature.feature_id AS exonic_splice_enhancer_id,
  15750. feature.feature_id,
  15751. feature.dbxref_id,
  15752. feature.organism_id,
  15753. feature.name,
  15754. feature.uniquename,
  15755. feature.residues,
  15756. feature.seqlen,
  15757. feature.md5checksum,
  15758. feature.type_id,
  15759. feature.is_analysis,
  15760. feature.is_obsolete,
  15761. feature.timeaccessioned,
  15762. feature.timelastmodified
  15763. FROM (feature
  15764. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15765. WHERE ((cvterm.name)::text = 'exonic_splice_enhancer'::text);
  15766. --
  15767. -- Name: experimental_feature; Type: VIEW; Schema: so; Owner: -
  15768. --
  15769. CREATE VIEW experimental_feature AS
  15770. SELECT feature.feature_id AS experimental_feature_id,
  15771. feature.feature_id,
  15772. feature.dbxref_id,
  15773. feature.organism_id,
  15774. feature.name,
  15775. feature.uniquename,
  15776. feature.residues,
  15777. feature.seqlen,
  15778. feature.md5checksum,
  15779. feature.type_id,
  15780. feature.is_analysis,
  15781. feature.is_obsolete,
  15782. feature.timeaccessioned,
  15783. feature.timelastmodified
  15784. FROM (feature
  15785. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15786. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'match_part'::text) OR ((cvterm.name)::text = 'assembly_component'::text)) OR ((cvterm.name)::text = 'conserved_region'::text)) OR ((cvterm.name)::text = 'match'::text)) OR ((cvterm.name)::text = 'remark'::text)) OR ((cvterm.name)::text = 'reading_frame'::text)) OR ((cvterm.name)::text = 'consensus_region'::text)) OR ((cvterm.name)::text = 'low_complexity_region'::text)) OR ((cvterm.name)::text = 'assembly'::text)) OR ((cvterm.name)::text = 'transcribed_fragment'::text)) OR ((cvterm.name)::text = 'transcribed_cluster'::text)) OR ((cvterm.name)::text = 'high_identity_region'::text)) OR ((cvterm.name)::text = 'mathematically_defined_repeat'::text)) OR ((cvterm.name)::text = 'experimentally_defined_binding_region'::text)) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'read'::text)) OR ((cvterm.name)::text = 'restriction_fragment'::text)) OR ((cvterm.name)::text = 'golden_path_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_fragment'::text)) OR ((cvterm.name)::text = 'gap'::text)) OR ((cvterm.name)::text = 'sonicate_fragment'::text)) OR ((cvterm.name)::text = 'paired_end_fragment'::text)) OR ((cvterm.name)::text = 'read_pair'::text)) OR ((cvterm.name)::text = 'contig_read'::text)) OR ((cvterm.name)::text = 'BAC_end'::text)) OR ((cvterm.name)::text = 'dye_terminator_read'::text)) OR ((cvterm.name)::text = 'pyrosequenced_read'::text)) OR ((cvterm.name)::text = 'ligation_based_read'::text)) OR ((cvterm.name)::text = 'polymerase_synthesis_read'::text)) OR ((cvterm.name)::text = 'PAC_end'::text)) OR ((cvterm.name)::text = 'YAC_end'::text)) OR ((cvterm.name)::text = 'clone_end'::text)) OR ((cvterm.name)::text = 'RFLP_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'coding_conserved_region'::text)) OR ((cvterm.name)::text = 'nc_conserved_region'::text)) OR ((cvterm.name)::text = 'RR_tract'::text)) OR ((cvterm.name)::text = 'homologous_region'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_I'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_II'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_III'::text)) OR ((cvterm.name)::text = 'X_element'::text)) OR ((cvterm.name)::text = 'U_box'::text)) OR ((cvterm.name)::text = 'regional_centromere_central_core'::text)) OR ((cvterm.name)::text = 'syntenic_region'::text)) OR ((cvterm.name)::text = 'paralogous_region'::text)) OR ((cvterm.name)::text = 'orthologous_region'::text)) OR ((cvterm.name)::text = 'nucleotide_match'::text)) OR ((cvterm.name)::text = 'protein_match'::text)) OR ((cvterm.name)::text = 'expressed_sequence_match'::text)) OR ((cvterm.name)::text = 'cross_genome_match'::text)) OR ((cvterm.name)::text = 'translated_nucleotide_match'::text)) OR ((cvterm.name)::text = 'primer_match'::text)) OR ((cvterm.name)::text = 'EST_match'::text)) OR ((cvterm.name)::text = 'cDNA_match'::text)) OR ((cvterm.name)::text = 'UST_match'::text)) OR ((cvterm.name)::text = 'RST_match'::text)) OR ((cvterm.name)::text = 'sequence_difference'::text)) OR ((cvterm.name)::text = 'experimental_result_region'::text)) OR ((cvterm.name)::text = 'polypeptide_sequencing_information'::text)) OR ((cvterm.name)::text = 'possible_base_call_error'::text)) OR ((cvterm.name)::text = 'possible_assembly_error'::text)) OR ((cvterm.name)::text = 'assembly_error_correction'::text)) OR ((cvterm.name)::text = 'base_call_error_correction'::text)) OR ((cvterm.name)::text = 'overlapping_feature_set'::text)) OR ((cvterm.name)::text = 'no_output'::text)) OR ((cvterm.name)::text = 'overlapping_EST_set'::text)) OR ((cvterm.name)::text = 'non_adjacent_residues'::text)) OR ((cvterm.name)::text = 'non_terminal_residue'::text)) OR ((cvterm.name)::text = 'sequence_conflict'::text)) OR ((cvterm.name)::text = 'sequence_uncertainty'::text)) OR ((cvterm.name)::text = 'contig_collection'::text)) OR ((cvterm.name)::text = 'ORF'::text)) OR ((cvterm.name)::text = 'blocked_reading_frame'::text)) OR ((cvterm.name)::text = 'mini_gene'::text)) OR ((cvterm.name)::text = 'rescue_mini_gene'::text)) OR ((cvterm.name)::text = 'consensus_mRNA'::text)) OR ((cvterm.name)::text = 'sequence_assembly'::text)) OR ((cvterm.name)::text = 'fragment_assembly'::text)) OR ((cvterm.name)::text = 'supercontig'::text)) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'tiling_path'::text)) OR ((cvterm.name)::text = 'virtual_sequence'::text)) OR ((cvterm.name)::text = 'golden_path'::text)) OR ((cvterm.name)::text = 'ultracontig'::text)) OR ((cvterm.name)::text = 'expressed_sequence_assembly'::text)) OR ((cvterm.name)::text = 'fingerprint_map'::text)) OR ((cvterm.name)::text = 'STS_map'::text)) OR ((cvterm.name)::text = 'RH_map'::text)) OR ((cvterm.name)::text = 'unigene_cluster'::text)) OR ((cvterm.name)::text = 'CHiP_seq_region'::text)) OR ((cvterm.name)::text = 'experimental_feature'::text));
  15787. --
  15788. -- Name: experimental_feature_attribute; Type: VIEW; Schema: so; Owner: -
  15789. --
  15790. CREATE VIEW experimental_feature_attribute AS
  15791. SELECT feature.feature_id AS experimental_feature_attribute_id,
  15792. feature.feature_id,
  15793. feature.dbxref_id,
  15794. feature.organism_id,
  15795. feature.name,
  15796. feature.uniquename,
  15797. feature.residues,
  15798. feature.seqlen,
  15799. feature.md5checksum,
  15800. feature.type_id,
  15801. feature.is_analysis,
  15802. feature.is_obsolete,
  15803. feature.timeaccessioned,
  15804. feature.timelastmodified
  15805. FROM (feature
  15806. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15807. WHERE ((((cvterm.name)::text = 'score'::text) OR ((cvterm.name)::text = 'quality_value'::text)) OR ((cvterm.name)::text = 'experimental_feature_attribute'::text));
  15808. --
  15809. -- Name: experimental_result_region; Type: VIEW; Schema: so; Owner: -
  15810. --
  15811. CREATE VIEW experimental_result_region AS
  15812. SELECT feature.feature_id AS experimental_result_region_id,
  15813. feature.feature_id,
  15814. feature.dbxref_id,
  15815. feature.organism_id,
  15816. feature.name,
  15817. feature.uniquename,
  15818. feature.residues,
  15819. feature.seqlen,
  15820. feature.md5checksum,
  15821. feature.type_id,
  15822. feature.is_analysis,
  15823. feature.is_obsolete,
  15824. feature.timeaccessioned,
  15825. feature.timelastmodified
  15826. FROM (feature
  15827. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15828. WHERE (((((cvterm.name)::text = 'overlapping_feature_set'::text) OR ((cvterm.name)::text = 'no_output'::text)) OR ((cvterm.name)::text = 'overlapping_EST_set'::text)) OR ((cvterm.name)::text = 'experimental_result_region'::text));
  15829. --
  15830. -- Name: experimentally_defined_binding_region; Type: VIEW; Schema: so; Owner: -
  15831. --
  15832. CREATE VIEW experimentally_defined_binding_region AS
  15833. SELECT feature.feature_id AS experimentally_defined_binding_region_id,
  15834. feature.feature_id,
  15835. feature.dbxref_id,
  15836. feature.organism_id,
  15837. feature.name,
  15838. feature.uniquename,
  15839. feature.residues,
  15840. feature.seqlen,
  15841. feature.md5checksum,
  15842. feature.type_id,
  15843. feature.is_analysis,
  15844. feature.is_obsolete,
  15845. feature.timeaccessioned,
  15846. feature.timelastmodified
  15847. FROM (feature
  15848. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15849. WHERE (((cvterm.name)::text = 'CHiP_seq_region'::text) OR ((cvterm.name)::text = 'experimentally_defined_binding_region'::text));
  15850. --
  15851. -- Name: experimentally_determined; Type: VIEW; Schema: so; Owner: -
  15852. --
  15853. CREATE VIEW experimentally_determined AS
  15854. SELECT feature.feature_id AS experimentally_determined_id,
  15855. feature.feature_id,
  15856. feature.dbxref_id,
  15857. feature.organism_id,
  15858. feature.name,
  15859. feature.uniquename,
  15860. feature.residues,
  15861. feature.seqlen,
  15862. feature.md5checksum,
  15863. feature.type_id,
  15864. feature.is_analysis,
  15865. feature.is_obsolete,
  15866. feature.timeaccessioned,
  15867. feature.timelastmodified
  15868. FROM (feature
  15869. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15870. WHERE ((cvterm.name)::text = 'experimentally_determined'::text);
  15871. --
  15872. -- Name: expressed_sequence_assembly; Type: VIEW; Schema: so; Owner: -
  15873. --
  15874. CREATE VIEW expressed_sequence_assembly AS
  15875. SELECT feature.feature_id AS expressed_sequence_assembly_id,
  15876. feature.feature_id,
  15877. feature.dbxref_id,
  15878. feature.organism_id,
  15879. feature.name,
  15880. feature.uniquename,
  15881. feature.residues,
  15882. feature.seqlen,
  15883. feature.md5checksum,
  15884. feature.type_id,
  15885. feature.is_analysis,
  15886. feature.is_obsolete,
  15887. feature.timeaccessioned,
  15888. feature.timelastmodified
  15889. FROM (feature
  15890. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15891. WHERE ((cvterm.name)::text = 'expressed_sequence_assembly'::text);
  15892. --
  15893. -- Name: expressed_sequence_match; Type: VIEW; Schema: so; Owner: -
  15894. --
  15895. CREATE VIEW expressed_sequence_match AS
  15896. SELECT feature.feature_id AS expressed_sequence_match_id,
  15897. feature.feature_id,
  15898. feature.dbxref_id,
  15899. feature.organism_id,
  15900. feature.name,
  15901. feature.uniquename,
  15902. feature.residues,
  15903. feature.seqlen,
  15904. feature.md5checksum,
  15905. feature.type_id,
  15906. feature.is_analysis,
  15907. feature.is_obsolete,
  15908. feature.timeaccessioned,
  15909. feature.timelastmodified
  15910. FROM (feature
  15911. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15912. WHERE ((((((cvterm.name)::text = 'EST_match'::text) OR ((cvterm.name)::text = 'cDNA_match'::text)) OR ((cvterm.name)::text = 'UST_match'::text)) OR ((cvterm.name)::text = 'RST_match'::text)) OR ((cvterm.name)::text = 'expressed_sequence_match'::text));
  15913. --
  15914. -- Name: external_transcribed_spacer_region; Type: VIEW; Schema: so; Owner: -
  15915. --
  15916. CREATE VIEW external_transcribed_spacer_region AS
  15917. SELECT feature.feature_id AS external_transcribed_spacer_region_id,
  15918. feature.feature_id,
  15919. feature.dbxref_id,
  15920. feature.organism_id,
  15921. feature.name,
  15922. feature.uniquename,
  15923. feature.residues,
  15924. feature.seqlen,
  15925. feature.md5checksum,
  15926. feature.type_id,
  15927. feature.is_analysis,
  15928. feature.is_obsolete,
  15929. feature.timeaccessioned,
  15930. feature.timelastmodified
  15931. FROM (feature
  15932. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15933. WHERE ((cvterm.name)::text = 'external_transcribed_spacer_region'::text);
  15934. --
  15935. -- Name: extrachromosomal_mobile_genetic_element; Type: VIEW; Schema: so; Owner: -
  15936. --
  15937. CREATE VIEW extrachromosomal_mobile_genetic_element AS
  15938. SELECT feature.feature_id AS extrachromosomal_mobile_genetic_element_id,
  15939. feature.feature_id,
  15940. feature.dbxref_id,
  15941. feature.organism_id,
  15942. feature.name,
  15943. feature.uniquename,
  15944. feature.residues,
  15945. feature.seqlen,
  15946. feature.md5checksum,
  15947. feature.type_id,
  15948. feature.is_analysis,
  15949. feature.is_obsolete,
  15950. feature.timeaccessioned,
  15951. feature.timelastmodified
  15952. FROM (feature
  15953. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15954. WHERE ((((((((((((cvterm.name)::text = 'natural_transposable_element'::text) OR ((cvterm.name)::text = 'viral_sequence'::text)) OR ((cvterm.name)::text = 'natural_plasmid'::text)) OR ((cvterm.name)::text = 'phage_sequence'::text)) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'extrachromosomal_mobile_genetic_element'::text));
  15955. --
  15956. -- Name: extramembrane_polypeptide_region; Type: VIEW; Schema: so; Owner: -
  15957. --
  15958. CREATE VIEW extramembrane_polypeptide_region AS
  15959. SELECT feature.feature_id AS extramembrane_polypeptide_region_id,
  15960. feature.feature_id,
  15961. feature.dbxref_id,
  15962. feature.organism_id,
  15963. feature.name,
  15964. feature.uniquename,
  15965. feature.residues,
  15966. feature.seqlen,
  15967. feature.md5checksum,
  15968. feature.type_id,
  15969. feature.is_analysis,
  15970. feature.is_obsolete,
  15971. feature.timeaccessioned,
  15972. feature.timelastmodified
  15973. FROM (feature
  15974. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15975. WHERE ((((cvterm.name)::text = 'cytoplasmic_polypeptide_region'::text) OR ((cvterm.name)::text = 'non_cytoplasmic_polypeptide_region'::text)) OR ((cvterm.name)::text = 'extramembrane_polypeptide_region'::text));
  15976. --
  15977. -- Name: feature_attribute; Type: VIEW; Schema: so; Owner: -
  15978. --
  15979. CREATE VIEW feature_attribute AS
  15980. SELECT feature.feature_id AS feature_attribute_id,
  15981. feature.feature_id,
  15982. feature.dbxref_id,
  15983. feature.organism_id,
  15984. feature.name,
  15985. feature.uniquename,
  15986. feature.residues,
  15987. feature.seqlen,
  15988. feature.md5checksum,
  15989. feature.type_id,
  15990. feature.is_analysis,
  15991. feature.is_obsolete,
  15992. feature.timeaccessioned,
  15993. feature.timelastmodified
  15994. FROM (feature
  15995. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  15996. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'transcript_attribute'::text) OR ((cvterm.name)::text = 'bound_by_factor'::text)) OR ((cvterm.name)::text = 'flanked'::text)) OR ((cvterm.name)::text = 'gene_attribute'::text)) OR ((cvterm.name)::text = 'retrotransposed'::text)) OR ((cvterm.name)::text = 'transgenic'::text)) OR ((cvterm.name)::text = 'natural'::text)) OR ((cvterm.name)::text = 'engineered'::text)) OR ((cvterm.name)::text = 'foreign'::text)) OR ((cvterm.name)::text = 'fusion'::text)) OR ((cvterm.name)::text = 'rescue'::text)) OR ((cvterm.name)::text = 'wild_type'::text)) OR ((cvterm.name)::text = 'conserved'::text)) OR ((cvterm.name)::text = 'status'::text)) OR ((cvterm.name)::text = 'intermediate'::text)) OR ((cvterm.name)::text = 'recombinationally_rearranged'::text)) OR ((cvterm.name)::text = 'cryptic'::text)) OR ((cvterm.name)::text = 'strand_attribute'::text)) OR ((cvterm.name)::text = 'direction_attribute'::text)) OR ((cvterm.name)::text = 'enzymatic'::text)) OR ((cvterm.name)::text = 'mobile'::text)) OR ((cvterm.name)::text = 'alteration_attribute'::text)) OR ((cvterm.name)::text = 'experimental_feature_attribute'::text)) OR ((cvterm.name)::text = 'edited'::text)) OR ((cvterm.name)::text = 'capped'::text)) OR ((cvterm.name)::text = 'mRNA_attribute'::text)) OR ((cvterm.name)::text = 'trans_spliced'::text)) OR ((cvterm.name)::text = 'alternatively_spliced'::text)) OR ((cvterm.name)::text = 'monocistronic'::text)) OR ((cvterm.name)::text = 'polycistronic'::text)) OR ((cvterm.name)::text = 'polyadenylated'::text)) OR ((cvterm.name)::text = 'exemplar'::text)) OR ((cvterm.name)::text = 'frameshift'::text)) OR ((cvterm.name)::text = 'recoded'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_framshift'::text)) OR ((cvterm.name)::text = 'codon_redefined'::text)) OR ((cvterm.name)::text = 'recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'minus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'plus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'dicistronic'::text)) OR ((cvterm.name)::text = 'bound_by_protein'::text)) OR ((cvterm.name)::text = 'bound_by_nucleic_acid'::text)) OR ((cvterm.name)::text = 'floxed'::text)) OR ((cvterm.name)::text = 'FRT_flanked'::text)) OR ((cvterm.name)::text = 'protein_coding'::text)) OR ((cvterm.name)::text = 'non_protein_coding'::text)) OR ((cvterm.name)::text = 'gene_to_gene_feature'::text)) OR ((cvterm.name)::text = 'gene_array_member'::text)) OR ((cvterm.name)::text = 'regulated'::text)) OR ((cvterm.name)::text = 'epigenetically_modified'::text)) OR ((cvterm.name)::text = 'encodes_alternately_spliced_transcripts'::text)) OR ((cvterm.name)::text = 'encodes_alternate_transcription_start_sites'::text)) OR ((cvterm.name)::text = 'intein_containing'::text)) OR ((cvterm.name)::text = 'miRNA_encoding'::text)) OR ((cvterm.name)::text = 'rRNA_encoding'::text)) OR ((cvterm.name)::text = 'scRNA_encoding'::text)) OR ((cvterm.name)::text = 'snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'snRNA_encoding'::text)) OR ((cvterm.name)::text = 'SRP_RNA_encoding'::text)) OR ((cvterm.name)::text = 'stRNA_encoding'::text)) OR ((cvterm.name)::text = 'tmRNA_encoding'::text)) OR ((cvterm.name)::text = 'tRNA_encoding'::text)) OR ((cvterm.name)::text = 'gRNA_encoding'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'overlapping'::text)) OR ((cvterm.name)::text = 'inside_intron'::text)) OR ((cvterm.name)::text = 'five_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'five_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'antisense'::text)) OR ((cvterm.name)::text = 'inside_intron_antiparallel'::text)) OR ((cvterm.name)::text = 'inside_intron_parallel'::text)) OR ((cvterm.name)::text = 'operon_member'::text)) OR ((cvterm.name)::text = 'gene_cassette_member'::text)) OR ((cvterm.name)::text = 'gene_subarray_member'::text)) OR ((cvterm.name)::text = 'member_of_regulon'::text)) OR ((cvterm.name)::text = 'cassette_array_member'::text)) OR ((cvterm.name)::text = 'transcriptionally_regulated'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated'::text)) OR ((cvterm.name)::text = 'translationally_regulated'::text)) OR ((cvterm.name)::text = 'imprinted'::text)) OR ((cvterm.name)::text = 'transcriptionally_constitutive'::text)) OR ((cvterm.name)::text = 'transcriptionally_induced'::text)) OR ((cvterm.name)::text = 'transcriptionally_repressed'::text)) OR ((cvterm.name)::text = 'autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'silenced'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_stability'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_modification'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'imprinted'::text)) OR ((cvterm.name)::text = 'allelically_excluded'::text)) OR ((cvterm.name)::text = 'rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'encodes_1_polypeptide'::text)) OR ((cvterm.name)::text = 'encodes_greater_than_1_polypeptide'::text)) OR ((cvterm.name)::text = 'encodes_disjoint_polypeptides'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides'::text)) OR ((cvterm.name)::text = 'encodes_different_polypeptides_different_stop'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides_different_start'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_polypeptides_different_start_and_stop'::text)) OR ((cvterm.name)::text = 'homologous'::text)) OR ((cvterm.name)::text = 'syntenic'::text)) OR ((cvterm.name)::text = 'orthologous'::text)) OR ((cvterm.name)::text = 'paralogous'::text)) OR ((cvterm.name)::text = 'fragmentary'::text)) OR ((cvterm.name)::text = 'predicted'::text)) OR ((cvterm.name)::text = 'validated'::text)) OR ((cvterm.name)::text = 'invalidated'::text)) OR ((cvterm.name)::text = 'independently_known'::text)) OR ((cvterm.name)::text = 'consensus'::text)) OR ((cvterm.name)::text = 'low_complexity'::text)) OR ((cvterm.name)::text = 'whole_genome_sequence_status'::text)) OR ((cvterm.name)::text = 'supported_by_sequence_similarity'::text)) OR ((cvterm.name)::text = 'orphan'::text)) OR ((cvterm.name)::text = 'predicted_by_ab_initio_computation'::text)) OR ((cvterm.name)::text = 'supported_by_domain_match'::text)) OR ((cvterm.name)::text = 'supported_by_EST_or_cDNA'::text)) OR ((cvterm.name)::text = 'experimentally_determined'::text)) OR ((cvterm.name)::text = 'invalidated_by_chimeric_cDNA'::text)) OR ((cvterm.name)::text = 'invalidated_by_genomic_contamination'::text)) OR ((cvterm.name)::text = 'invalidated_by_genomic_polyA_primed_cDNA'::text)) OR ((cvterm.name)::text = 'invalidated_by_partial_processing'::text)) OR ((cvterm.name)::text = 'standard_draft'::text)) OR ((cvterm.name)::text = 'high_quality_draft'::text)) OR ((cvterm.name)::text = 'improved_high_quality_draft'::text)) OR ((cvterm.name)::text = 'annotation_directed_improved_draft'::text)) OR ((cvterm.name)::text = 'noncontiguous_finished'::text)) OR ((cvterm.name)::text = 'finished_genome'::text)) OR ((cvterm.name)::text = 'single'::text)) OR ((cvterm.name)::text = 'double'::text)) OR ((cvterm.name)::text = 'forward'::text)) OR ((cvterm.name)::text = 'reverse'::text)) OR ((cvterm.name)::text = 'ribozymic'::text)) OR ((cvterm.name)::text = 'chromosomal_variation_attribute'::text)) OR ((cvterm.name)::text = 'insertion_attribute'::text)) OR ((cvterm.name)::text = 'inversion_attribute'::text)) OR ((cvterm.name)::text = 'translocaton_attribute'::text)) OR ((cvterm.name)::text = 'duplication_attribute'::text)) OR ((cvterm.name)::text = 'intrachromosomal'::text)) OR ((cvterm.name)::text = 'interchromosomal'::text)) OR ((cvterm.name)::text = 'tandem'::text)) OR ((cvterm.name)::text = 'direct'::text)) OR ((cvterm.name)::text = 'inverted'::text)) OR ((cvterm.name)::text = 'pericentric'::text)) OR ((cvterm.name)::text = 'paracentric'::text)) OR ((cvterm.name)::text = 'reciprocal'::text)) OR ((cvterm.name)::text = 'insertional'::text)) OR ((cvterm.name)::text = 'free'::text)) OR ((cvterm.name)::text = 'score'::text)) OR ((cvterm.name)::text = 'quality_value'::text)) OR ((cvterm.name)::text = 'feature_attribute'::text));
  15997. --
  15998. -- Name: fingerprint_map; Type: VIEW; Schema: so; Owner: -
  15999. --
  16000. CREATE VIEW fingerprint_map AS
  16001. SELECT feature.feature_id AS fingerprint_map_id,
  16002. feature.feature_id,
  16003. feature.dbxref_id,
  16004. feature.organism_id,
  16005. feature.name,
  16006. feature.uniquename,
  16007. feature.residues,
  16008. feature.seqlen,
  16009. feature.md5checksum,
  16010. feature.type_id,
  16011. feature.is_analysis,
  16012. feature.is_obsolete,
  16013. feature.timeaccessioned,
  16014. feature.timelastmodified
  16015. FROM (feature
  16016. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16017. WHERE ((cvterm.name)::text = 'fingerprint_map'::text);
  16018. --
  16019. -- Name: finished_genome; Type: VIEW; Schema: so; Owner: -
  16020. --
  16021. CREATE VIEW finished_genome AS
  16022. SELECT feature.feature_id AS finished_genome_id,
  16023. feature.feature_id,
  16024. feature.dbxref_id,
  16025. feature.organism_id,
  16026. feature.name,
  16027. feature.uniquename,
  16028. feature.residues,
  16029. feature.seqlen,
  16030. feature.md5checksum,
  16031. feature.type_id,
  16032. feature.is_analysis,
  16033. feature.is_obsolete,
  16034. feature.timeaccessioned,
  16035. feature.timelastmodified
  16036. FROM (feature
  16037. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16038. WHERE ((cvterm.name)::text = 'finished_genome'::text);
  16039. --
  16040. -- Name: five_aminomethyl_two_thiouridine; Type: VIEW; Schema: so; Owner: -
  16041. --
  16042. CREATE VIEW five_aminomethyl_two_thiouridine AS
  16043. SELECT feature.feature_id AS five_aminomethyl_two_thiouridine_id,
  16044. feature.feature_id,
  16045. feature.dbxref_id,
  16046. feature.organism_id,
  16047. feature.name,
  16048. feature.uniquename,
  16049. feature.residues,
  16050. feature.seqlen,
  16051. feature.md5checksum,
  16052. feature.type_id,
  16053. feature.is_analysis,
  16054. feature.is_obsolete,
  16055. feature.timeaccessioned,
  16056. feature.timelastmodified
  16057. FROM (feature
  16058. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16059. WHERE ((cvterm.name)::text = 'five_aminomethyl_two_thiouridine'::text);
  16060. --
  16061. -- Name: five_carbamoylmethyluridine; Type: VIEW; Schema: so; Owner: -
  16062. --
  16063. CREATE VIEW five_carbamoylmethyluridine AS
  16064. SELECT feature.feature_id AS five_carbamoylmethyluridine_id,
  16065. feature.feature_id,
  16066. feature.dbxref_id,
  16067. feature.organism_id,
  16068. feature.name,
  16069. feature.uniquename,
  16070. feature.residues,
  16071. feature.seqlen,
  16072. feature.md5checksum,
  16073. feature.type_id,
  16074. feature.is_analysis,
  16075. feature.is_obsolete,
  16076. feature.timeaccessioned,
  16077. feature.timelastmodified
  16078. FROM (feature
  16079. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16080. WHERE ((cvterm.name)::text = 'five_carbamoylmethyluridine'::text);
  16081. --
  16082. -- Name: five_carboxyhydroxymethyl_uridine; Type: VIEW; Schema: so; Owner: -
  16083. --
  16084. CREATE VIEW five_carboxyhydroxymethyl_uridine AS
  16085. SELECT feature.feature_id AS five_carboxyhydroxymethyl_uridine_id,
  16086. feature.feature_id,
  16087. feature.dbxref_id,
  16088. feature.organism_id,
  16089. feature.name,
  16090. feature.uniquename,
  16091. feature.residues,
  16092. feature.seqlen,
  16093. feature.md5checksum,
  16094. feature.type_id,
  16095. feature.is_analysis,
  16096. feature.is_obsolete,
  16097. feature.timeaccessioned,
  16098. feature.timelastmodified
  16099. FROM (feature
  16100. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16101. WHERE ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine'::text);
  16102. --
  16103. -- Name: five_carboxyhydroxymethyl_uridine_methyl_ester; Type: VIEW; Schema: so; Owner: -
  16104. --
  16105. CREATE VIEW five_carboxyhydroxymethyl_uridine_methyl_ester AS
  16106. SELECT feature.feature_id AS five_carboxyhydroxymethyl_uridine_methyl_ester_id,
  16107. feature.feature_id,
  16108. feature.dbxref_id,
  16109. feature.organism_id,
  16110. feature.name,
  16111. feature.uniquename,
  16112. feature.residues,
  16113. feature.seqlen,
  16114. feature.md5checksum,
  16115. feature.type_id,
  16116. feature.is_analysis,
  16117. feature.is_obsolete,
  16118. feature.timeaccessioned,
  16119. feature.timelastmodified
  16120. FROM (feature
  16121. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16122. WHERE ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine_methyl_ester'::text);
  16123. --
  16124. -- Name: five_carboxymethylaminomethyl_two_prime_o_methyluridine; Type: VIEW; Schema: so; Owner: -
  16125. --
  16126. CREATE VIEW five_carboxymethylaminomethyl_two_prime_o_methyluridine AS
  16127. SELECT feature.feature_id AS five_carboxymethylaminomethyl_two_prime_o_methyluridine_id,
  16128. feature.feature_id,
  16129. feature.dbxref_id,
  16130. feature.organism_id,
  16131. feature.name,
  16132. feature.uniquename,
  16133. feature.residues,
  16134. feature.seqlen,
  16135. feature.md5checksum,
  16136. feature.type_id,
  16137. feature.is_analysis,
  16138. feature.is_obsolete,
  16139. feature.timeaccessioned,
  16140. feature.timelastmodified
  16141. FROM (feature
  16142. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16143. WHERE ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine'::text);
  16144. --
  16145. -- Name: five_carboxymethylaminomethyl_two_thiouridine; Type: VIEW; Schema: so; Owner: -
  16146. --
  16147. CREATE VIEW five_carboxymethylaminomethyl_two_thiouridine AS
  16148. SELECT feature.feature_id AS five_carboxymethylaminomethyl_two_thiouridine_id,
  16149. feature.feature_id,
  16150. feature.dbxref_id,
  16151. feature.organism_id,
  16152. feature.name,
  16153. feature.uniquename,
  16154. feature.residues,
  16155. feature.seqlen,
  16156. feature.md5checksum,
  16157. feature.type_id,
  16158. feature.is_analysis,
  16159. feature.is_obsolete,
  16160. feature.timeaccessioned,
  16161. feature.timelastmodified
  16162. FROM (feature
  16163. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16164. WHERE ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_thiouridine'::text);
  16165. --
  16166. -- Name: five_carboxymethylaminomethyluridine; Type: VIEW; Schema: so; Owner: -
  16167. --
  16168. CREATE VIEW five_carboxymethylaminomethyluridine AS
  16169. SELECT feature.feature_id AS five_carboxymethylaminomethyluridine_id,
  16170. feature.feature_id,
  16171. feature.dbxref_id,
  16172. feature.organism_id,
  16173. feature.name,
  16174. feature.uniquename,
  16175. feature.residues,
  16176. feature.seqlen,
  16177. feature.md5checksum,
  16178. feature.type_id,
  16179. feature.is_analysis,
  16180. feature.is_obsolete,
  16181. feature.timeaccessioned,
  16182. feature.timelastmodified
  16183. FROM (feature
  16184. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16185. WHERE ((cvterm.name)::text = 'five_carboxymethylaminomethyluridine'::text);
  16186. --
  16187. -- Name: five_carboxymethyluridine; Type: VIEW; Schema: so; Owner: -
  16188. --
  16189. CREATE VIEW five_carboxymethyluridine AS
  16190. SELECT feature.feature_id AS five_carboxymethyluridine_id,
  16191. feature.feature_id,
  16192. feature.dbxref_id,
  16193. feature.organism_id,
  16194. feature.name,
  16195. feature.uniquename,
  16196. feature.residues,
  16197. feature.seqlen,
  16198. feature.md5checksum,
  16199. feature.type_id,
  16200. feature.is_analysis,
  16201. feature.is_obsolete,
  16202. feature.timeaccessioned,
  16203. feature.timelastmodified
  16204. FROM (feature
  16205. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16206. WHERE ((cvterm.name)::text = 'five_carboxymethyluridine'::text);
  16207. --
  16208. -- Name: five_cm_2_prime_o_methu; Type: VIEW; Schema: so; Owner: -
  16209. --
  16210. CREATE VIEW five_cm_2_prime_o_methu AS
  16211. SELECT feature.feature_id AS five_cm_2_prime_o_methu_id,
  16212. feature.feature_id,
  16213. feature.dbxref_id,
  16214. feature.organism_id,
  16215. feature.name,
  16216. feature.uniquename,
  16217. feature.residues,
  16218. feature.seqlen,
  16219. feature.md5checksum,
  16220. feature.type_id,
  16221. feature.is_analysis,
  16222. feature.is_obsolete,
  16223. feature.timeaccessioned,
  16224. feature.timelastmodified
  16225. FROM (feature
  16226. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16227. WHERE ((cvterm.name)::text = 'five_carbamoylmethyl_two_prime_O_methyluridine'::text);
  16228. --
  16229. -- Name: five_formyl_two_prime_o_methylcytidine; Type: VIEW; Schema: so; Owner: -
  16230. --
  16231. CREATE VIEW five_formyl_two_prime_o_methylcytidine AS
  16232. SELECT feature.feature_id AS five_formyl_two_prime_o_methylcytidine_id,
  16233. feature.feature_id,
  16234. feature.dbxref_id,
  16235. feature.organism_id,
  16236. feature.name,
  16237. feature.uniquename,
  16238. feature.residues,
  16239. feature.seqlen,
  16240. feature.md5checksum,
  16241. feature.type_id,
  16242. feature.is_analysis,
  16243. feature.is_obsolete,
  16244. feature.timeaccessioned,
  16245. feature.timelastmodified
  16246. FROM (feature
  16247. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16248. WHERE ((cvterm.name)::text = 'five_formyl_two_prime_O_methylcytidine'::text);
  16249. --
  16250. -- Name: five_formylcytidine; Type: VIEW; Schema: so; Owner: -
  16251. --
  16252. CREATE VIEW five_formylcytidine AS
  16253. SELECT feature.feature_id AS five_formylcytidine_id,
  16254. feature.feature_id,
  16255. feature.dbxref_id,
  16256. feature.organism_id,
  16257. feature.name,
  16258. feature.uniquename,
  16259. feature.residues,
  16260. feature.seqlen,
  16261. feature.md5checksum,
  16262. feature.type_id,
  16263. feature.is_analysis,
  16264. feature.is_obsolete,
  16265. feature.timeaccessioned,
  16266. feature.timelastmodified
  16267. FROM (feature
  16268. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16269. WHERE ((cvterm.name)::text = 'five_formylcytidine'::text);
  16270. --
  16271. -- Name: five_hydroxymethylcytidine; Type: VIEW; Schema: so; Owner: -
  16272. --
  16273. CREATE VIEW five_hydroxymethylcytidine AS
  16274. SELECT feature.feature_id AS five_hydroxymethylcytidine_id,
  16275. feature.feature_id,
  16276. feature.dbxref_id,
  16277. feature.organism_id,
  16278. feature.name,
  16279. feature.uniquename,
  16280. feature.residues,
  16281. feature.seqlen,
  16282. feature.md5checksum,
  16283. feature.type_id,
  16284. feature.is_analysis,
  16285. feature.is_obsolete,
  16286. feature.timeaccessioned,
  16287. feature.timelastmodified
  16288. FROM (feature
  16289. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16290. WHERE ((cvterm.name)::text = 'five_hydroxymethylcytidine'::text);
  16291. --
  16292. -- Name: five_hydroxyuridine; Type: VIEW; Schema: so; Owner: -
  16293. --
  16294. CREATE VIEW five_hydroxyuridine AS
  16295. SELECT feature.feature_id AS five_hydroxyuridine_id,
  16296. feature.feature_id,
  16297. feature.dbxref_id,
  16298. feature.organism_id,
  16299. feature.name,
  16300. feature.uniquename,
  16301. feature.residues,
  16302. feature.seqlen,
  16303. feature.md5checksum,
  16304. feature.type_id,
  16305. feature.is_analysis,
  16306. feature.is_obsolete,
  16307. feature.timeaccessioned,
  16308. feature.timelastmodified
  16309. FROM (feature
  16310. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16311. WHERE ((cvterm.name)::text = 'five_hydroxyuridine'::text);
  16312. --
  16313. -- Name: five_isopentenylaminomethyl_two_prime_o_methyluridine; Type: VIEW; Schema: so; Owner: -
  16314. --
  16315. CREATE VIEW five_isopentenylaminomethyl_two_prime_o_methyluridine AS
  16316. SELECT feature.feature_id AS five_isopentenylaminomethyl_two_prime_o_methyluridine_id,
  16317. feature.feature_id,
  16318. feature.dbxref_id,
  16319. feature.organism_id,
  16320. feature.name,
  16321. feature.uniquename,
  16322. feature.residues,
  16323. feature.seqlen,
  16324. feature.md5checksum,
  16325. feature.type_id,
  16326. feature.is_analysis,
  16327. feature.is_obsolete,
  16328. feature.timeaccessioned,
  16329. feature.timelastmodified
  16330. FROM (feature
  16331. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16332. WHERE ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_prime_O_methyluridine'::text);
  16333. --
  16334. -- Name: five_isopentenylaminomethyl_two_thiouridine; Type: VIEW; Schema: so; Owner: -
  16335. --
  16336. CREATE VIEW five_isopentenylaminomethyl_two_thiouridine AS
  16337. SELECT feature.feature_id AS five_isopentenylaminomethyl_two_thiouridine_id,
  16338. feature.feature_id,
  16339. feature.dbxref_id,
  16340. feature.organism_id,
  16341. feature.name,
  16342. feature.uniquename,
  16343. feature.residues,
  16344. feature.seqlen,
  16345. feature.md5checksum,
  16346. feature.type_id,
  16347. feature.is_analysis,
  16348. feature.is_obsolete,
  16349. feature.timeaccessioned,
  16350. feature.timelastmodified
  16351. FROM (feature
  16352. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16353. WHERE ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_thiouridine'::text);
  16354. --
  16355. -- Name: five_isopentenylaminomethyl_uridine; Type: VIEW; Schema: so; Owner: -
  16356. --
  16357. CREATE VIEW five_isopentenylaminomethyl_uridine AS
  16358. SELECT feature.feature_id AS five_isopentenylaminomethyl_uridine_id,
  16359. feature.feature_id,
  16360. feature.dbxref_id,
  16361. feature.organism_id,
  16362. feature.name,
  16363. feature.uniquename,
  16364. feature.residues,
  16365. feature.seqlen,
  16366. feature.md5checksum,
  16367. feature.type_id,
  16368. feature.is_analysis,
  16369. feature.is_obsolete,
  16370. feature.timeaccessioned,
  16371. feature.timelastmodified
  16372. FROM (feature
  16373. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16374. WHERE ((cvterm.name)::text = 'five_isopentenylaminomethyl_uridine'::text);
  16375. --
  16376. -- Name: five_mam_2_thiouridine; Type: VIEW; Schema: so; Owner: -
  16377. --
  16378. CREATE VIEW five_mam_2_thiouridine AS
  16379. SELECT feature.feature_id AS five_mam_2_thiouridine_id,
  16380. feature.feature_id,
  16381. feature.dbxref_id,
  16382. feature.organism_id,
  16383. feature.name,
  16384. feature.uniquename,
  16385. feature.residues,
  16386. feature.seqlen,
  16387. feature.md5checksum,
  16388. feature.type_id,
  16389. feature.is_analysis,
  16390. feature.is_obsolete,
  16391. feature.timeaccessioned,
  16392. feature.timelastmodified
  16393. FROM (feature
  16394. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16395. WHERE ((cvterm.name)::text = 'five_methylaminomethyl_two_thiouridine'::text);
  16396. --
  16397. -- Name: five_mcm_2_thiouridine; Type: VIEW; Schema: so; Owner: -
  16398. --
  16399. CREATE VIEW five_mcm_2_thiouridine AS
  16400. SELECT feature.feature_id AS five_mcm_2_thiouridine_id,
  16401. feature.feature_id,
  16402. feature.dbxref_id,
  16403. feature.organism_id,
  16404. feature.name,
  16405. feature.uniquename,
  16406. feature.residues,
  16407. feature.seqlen,
  16408. feature.md5checksum,
  16409. feature.type_id,
  16410. feature.is_analysis,
  16411. feature.is_obsolete,
  16412. feature.timeaccessioned,
  16413. feature.timelastmodified
  16414. FROM (feature
  16415. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16416. WHERE ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_thiouridine'::text);
  16417. --
  16418. -- Name: five_methoxycarbonylmethyl_two_prime_o_methyluridine; Type: VIEW; Schema: so; Owner: -
  16419. --
  16420. CREATE VIEW five_methoxycarbonylmethyl_two_prime_o_methyluridine AS
  16421. SELECT feature.feature_id AS five_methoxycarbonylmethyl_two_prime_o_methyluridine_id,
  16422. feature.feature_id,
  16423. feature.dbxref_id,
  16424. feature.organism_id,
  16425. feature.name,
  16426. feature.uniquename,
  16427. feature.residues,
  16428. feature.seqlen,
  16429. feature.md5checksum,
  16430. feature.type_id,
  16431. feature.is_analysis,
  16432. feature.is_obsolete,
  16433. feature.timeaccessioned,
  16434. feature.timelastmodified
  16435. FROM (feature
  16436. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16437. WHERE ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine'::text);
  16438. --
  16439. -- Name: five_methoxycarbonylmethyluridine; Type: VIEW; Schema: so; Owner: -
  16440. --
  16441. CREATE VIEW five_methoxycarbonylmethyluridine AS
  16442. SELECT feature.feature_id AS five_methoxycarbonylmethyluridine_id,
  16443. feature.feature_id,
  16444. feature.dbxref_id,
  16445. feature.organism_id,
  16446. feature.name,
  16447. feature.uniquename,
  16448. feature.residues,
  16449. feature.seqlen,
  16450. feature.md5checksum,
  16451. feature.type_id,
  16452. feature.is_analysis,
  16453. feature.is_obsolete,
  16454. feature.timeaccessioned,
  16455. feature.timelastmodified
  16456. FROM (feature
  16457. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16458. WHERE ((cvterm.name)::text = 'five_methoxycarbonylmethyluridine'::text);
  16459. --
  16460. -- Name: five_methoxyuridine; Type: VIEW; Schema: so; Owner: -
  16461. --
  16462. CREATE VIEW five_methoxyuridine AS
  16463. SELECT feature.feature_id AS five_methoxyuridine_id,
  16464. feature.feature_id,
  16465. feature.dbxref_id,
  16466. feature.organism_id,
  16467. feature.name,
  16468. feature.uniquename,
  16469. feature.residues,
  16470. feature.seqlen,
  16471. feature.md5checksum,
  16472. feature.type_id,
  16473. feature.is_analysis,
  16474. feature.is_obsolete,
  16475. feature.timeaccessioned,
  16476. feature.timelastmodified
  16477. FROM (feature
  16478. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16479. WHERE ((cvterm.name)::text = 'five_methoxyuridine'::text);
  16480. --
  16481. -- Name: five_methyl_2_thiouridine; Type: VIEW; Schema: so; Owner: -
  16482. --
  16483. CREATE VIEW five_methyl_2_thiouridine AS
  16484. SELECT feature.feature_id AS five_methyl_2_thiouridine_id,
  16485. feature.feature_id,
  16486. feature.dbxref_id,
  16487. feature.organism_id,
  16488. feature.name,
  16489. feature.uniquename,
  16490. feature.residues,
  16491. feature.seqlen,
  16492. feature.md5checksum,
  16493. feature.type_id,
  16494. feature.is_analysis,
  16495. feature.is_obsolete,
  16496. feature.timeaccessioned,
  16497. feature.timelastmodified
  16498. FROM (feature
  16499. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16500. WHERE ((cvterm.name)::text = 'five_methyl_2_thiouridine'::text);
  16501. --
  16502. -- Name: five_methylaminomethyl_two_selenouridine; Type: VIEW; Schema: so; Owner: -
  16503. --
  16504. CREATE VIEW five_methylaminomethyl_two_selenouridine AS
  16505. SELECT feature.feature_id AS five_methylaminomethyl_two_selenouridine_id,
  16506. feature.feature_id,
  16507. feature.dbxref_id,
  16508. feature.organism_id,
  16509. feature.name,
  16510. feature.uniquename,
  16511. feature.residues,
  16512. feature.seqlen,
  16513. feature.md5checksum,
  16514. feature.type_id,
  16515. feature.is_analysis,
  16516. feature.is_obsolete,
  16517. feature.timeaccessioned,
  16518. feature.timelastmodified
  16519. FROM (feature
  16520. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16521. WHERE ((cvterm.name)::text = 'five_methylaminomethyl_two_selenouridine'::text);
  16522. --
  16523. -- Name: five_methylaminomethyluridine; Type: VIEW; Schema: so; Owner: -
  16524. --
  16525. CREATE VIEW five_methylaminomethyluridine AS
  16526. SELECT feature.feature_id AS five_methylaminomethyluridine_id,
  16527. feature.feature_id,
  16528. feature.dbxref_id,
  16529. feature.organism_id,
  16530. feature.name,
  16531. feature.uniquename,
  16532. feature.residues,
  16533. feature.seqlen,
  16534. feature.md5checksum,
  16535. feature.type_id,
  16536. feature.is_analysis,
  16537. feature.is_obsolete,
  16538. feature.timeaccessioned,
  16539. feature.timelastmodified
  16540. FROM (feature
  16541. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16542. WHERE ((cvterm.name)::text = 'five_methylaminomethyluridine'::text);
  16543. --
  16544. -- Name: five_methylcytidine; Type: VIEW; Schema: so; Owner: -
  16545. --
  16546. CREATE VIEW five_methylcytidine AS
  16547. SELECT feature.feature_id AS five_methylcytidine_id,
  16548. feature.feature_id,
  16549. feature.dbxref_id,
  16550. feature.organism_id,
  16551. feature.name,
  16552. feature.uniquename,
  16553. feature.residues,
  16554. feature.seqlen,
  16555. feature.md5checksum,
  16556. feature.type_id,
  16557. feature.is_analysis,
  16558. feature.is_obsolete,
  16559. feature.timeaccessioned,
  16560. feature.timelastmodified
  16561. FROM (feature
  16562. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16563. WHERE ((cvterm.name)::text = 'five_methylcytidine'::text);
  16564. --
  16565. -- Name: five_methyldihydrouridine; Type: VIEW; Schema: so; Owner: -
  16566. --
  16567. CREATE VIEW five_methyldihydrouridine AS
  16568. SELECT feature.feature_id AS five_methyldihydrouridine_id,
  16569. feature.feature_id,
  16570. feature.dbxref_id,
  16571. feature.organism_id,
  16572. feature.name,
  16573. feature.uniquename,
  16574. feature.residues,
  16575. feature.seqlen,
  16576. feature.md5checksum,
  16577. feature.type_id,
  16578. feature.is_analysis,
  16579. feature.is_obsolete,
  16580. feature.timeaccessioned,
  16581. feature.timelastmodified
  16582. FROM (feature
  16583. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16584. WHERE ((cvterm.name)::text = 'five_methyldihydrouridine'::text);
  16585. --
  16586. -- Name: five_methyluridine; Type: VIEW; Schema: so; Owner: -
  16587. --
  16588. CREATE VIEW five_methyluridine AS
  16589. SELECT feature.feature_id AS five_methyluridine_id,
  16590. feature.feature_id,
  16591. feature.dbxref_id,
  16592. feature.organism_id,
  16593. feature.name,
  16594. feature.uniquename,
  16595. feature.residues,
  16596. feature.seqlen,
  16597. feature.md5checksum,
  16598. feature.type_id,
  16599. feature.is_analysis,
  16600. feature.is_obsolete,
  16601. feature.timeaccessioned,
  16602. feature.timelastmodified
  16603. FROM (feature
  16604. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16605. WHERE ((cvterm.name)::text = 'five_methyluridine'::text);
  16606. --
  16607. -- Name: five_prime_cis_splice_site; Type: VIEW; Schema: so; Owner: -
  16608. --
  16609. CREATE VIEW five_prime_cis_splice_site AS
  16610. SELECT feature.feature_id AS five_prime_cis_splice_site_id,
  16611. feature.feature_id,
  16612. feature.dbxref_id,
  16613. feature.organism_id,
  16614. feature.name,
  16615. feature.uniquename,
  16616. feature.residues,
  16617. feature.seqlen,
  16618. feature.md5checksum,
  16619. feature.type_id,
  16620. feature.is_analysis,
  16621. feature.is_obsolete,
  16622. feature.timeaccessioned,
  16623. feature.timelastmodified
  16624. FROM (feature
  16625. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16626. WHERE ((((cvterm.name)::text = 'canonical_five_prime_splice_site'::text) OR ((cvterm.name)::text = 'non_canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'five_prime_cis_splice_site'::text));
  16627. --
  16628. -- Name: five_prime_clip; Type: VIEW; Schema: so; Owner: -
  16629. --
  16630. CREATE VIEW five_prime_clip AS
  16631. SELECT feature.feature_id AS five_prime_clip_id,
  16632. feature.feature_id,
  16633. feature.dbxref_id,
  16634. feature.organism_id,
  16635. feature.name,
  16636. feature.uniquename,
  16637. feature.residues,
  16638. feature.seqlen,
  16639. feature.md5checksum,
  16640. feature.type_id,
  16641. feature.is_analysis,
  16642. feature.is_obsolete,
  16643. feature.timeaccessioned,
  16644. feature.timelastmodified
  16645. FROM (feature
  16646. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16647. WHERE ((cvterm.name)::text = 'five_prime_clip'::text);
  16648. --
  16649. -- Name: five_prime_coding_exon; Type: VIEW; Schema: so; Owner: -
  16650. --
  16651. CREATE VIEW five_prime_coding_exon AS
  16652. SELECT feature.feature_id AS five_prime_coding_exon_id,
  16653. feature.feature_id,
  16654. feature.dbxref_id,
  16655. feature.organism_id,
  16656. feature.name,
  16657. feature.uniquename,
  16658. feature.residues,
  16659. feature.seqlen,
  16660. feature.md5checksum,
  16661. feature.type_id,
  16662. feature.is_analysis,
  16663. feature.is_obsolete,
  16664. feature.timeaccessioned,
  16665. feature.timelastmodified
  16666. FROM (feature
  16667. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16668. WHERE ((cvterm.name)::text = 'five_prime_coding_exon'::text);
  16669. --
  16670. -- Name: five_prime_coding_exon_coding_region; Type: VIEW; Schema: so; Owner: -
  16671. --
  16672. CREATE VIEW five_prime_coding_exon_coding_region AS
  16673. SELECT feature.feature_id AS five_prime_coding_exon_coding_region_id,
  16674. feature.feature_id,
  16675. feature.dbxref_id,
  16676. feature.organism_id,
  16677. feature.name,
  16678. feature.uniquename,
  16679. feature.residues,
  16680. feature.seqlen,
  16681. feature.md5checksum,
  16682. feature.type_id,
  16683. feature.is_analysis,
  16684. feature.is_obsolete,
  16685. feature.timeaccessioned,
  16686. feature.timelastmodified
  16687. FROM (feature
  16688. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16689. WHERE ((cvterm.name)::text = 'five_prime_coding_exon_coding_region'::text);
  16690. --
  16691. -- Name: five_prime_coding_exon_noncoding_region; Type: VIEW; Schema: so; Owner: -
  16692. --
  16693. CREATE VIEW five_prime_coding_exon_noncoding_region AS
  16694. SELECT feature.feature_id AS five_prime_coding_exon_noncoding_region_id,
  16695. feature.feature_id,
  16696. feature.dbxref_id,
  16697. feature.organism_id,
  16698. feature.name,
  16699. feature.uniquename,
  16700. feature.residues,
  16701. feature.seqlen,
  16702. feature.md5checksum,
  16703. feature.type_id,
  16704. feature.is_analysis,
  16705. feature.is_obsolete,
  16706. feature.timeaccessioned,
  16707. feature.timelastmodified
  16708. FROM (feature
  16709. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16710. WHERE ((cvterm.name)::text = 'five_prime_coding_exon_noncoding_region'::text);
  16711. --
  16712. -- Name: five_prime_d_heptamer; Type: VIEW; Schema: so; Owner: -
  16713. --
  16714. CREATE VIEW five_prime_d_heptamer AS
  16715. SELECT feature.feature_id AS five_prime_d_heptamer_id,
  16716. feature.feature_id,
  16717. feature.dbxref_id,
  16718. feature.organism_id,
  16719. feature.name,
  16720. feature.uniquename,
  16721. feature.residues,
  16722. feature.seqlen,
  16723. feature.md5checksum,
  16724. feature.type_id,
  16725. feature.is_analysis,
  16726. feature.is_obsolete,
  16727. feature.timeaccessioned,
  16728. feature.timelastmodified
  16729. FROM (feature
  16730. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16731. WHERE ((cvterm.name)::text = 'five_prime_D_heptamer'::text);
  16732. --
  16733. -- Name: five_prime_d_nonamer; Type: VIEW; Schema: so; Owner: -
  16734. --
  16735. CREATE VIEW five_prime_d_nonamer AS
  16736. SELECT feature.feature_id AS five_prime_d_nonamer_id,
  16737. feature.feature_id,
  16738. feature.dbxref_id,
  16739. feature.organism_id,
  16740. feature.name,
  16741. feature.uniquename,
  16742. feature.residues,
  16743. feature.seqlen,
  16744. feature.md5checksum,
  16745. feature.type_id,
  16746. feature.is_analysis,
  16747. feature.is_obsolete,
  16748. feature.timeaccessioned,
  16749. feature.timelastmodified
  16750. FROM (feature
  16751. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16752. WHERE ((cvterm.name)::text = 'five_prime_D_nonamer'::text);
  16753. --
  16754. -- Name: five_prime_d_recombination_signal_sequence; Type: VIEW; Schema: so; Owner: -
  16755. --
  16756. CREATE VIEW five_prime_d_recombination_signal_sequence AS
  16757. SELECT feature.feature_id AS five_prime_d_recombination_signal_sequence_id,
  16758. feature.feature_id,
  16759. feature.dbxref_id,
  16760. feature.organism_id,
  16761. feature.name,
  16762. feature.uniquename,
  16763. feature.residues,
  16764. feature.seqlen,
  16765. feature.md5checksum,
  16766. feature.type_id,
  16767. feature.is_analysis,
  16768. feature.is_obsolete,
  16769. feature.timeaccessioned,
  16770. feature.timelastmodified
  16771. FROM (feature
  16772. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16773. WHERE ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text);
  16774. --
  16775. -- Name: five_prime_d_spacer; Type: VIEW; Schema: so; Owner: -
  16776. --
  16777. CREATE VIEW five_prime_d_spacer AS
  16778. SELECT feature.feature_id AS five_prime_d_spacer_id,
  16779. feature.feature_id,
  16780. feature.dbxref_id,
  16781. feature.organism_id,
  16782. feature.name,
  16783. feature.uniquename,
  16784. feature.residues,
  16785. feature.seqlen,
  16786. feature.md5checksum,
  16787. feature.type_id,
  16788. feature.is_analysis,
  16789. feature.is_obsolete,
  16790. feature.timeaccessioned,
  16791. feature.timelastmodified
  16792. FROM (feature
  16793. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16794. WHERE ((cvterm.name)::text = 'five_prime_D_spacer'::text);
  16795. --
  16796. -- Name: five_prime_est; Type: VIEW; Schema: so; Owner: -
  16797. --
  16798. CREATE VIEW five_prime_est AS
  16799. SELECT feature.feature_id AS five_prime_est_id,
  16800. feature.feature_id,
  16801. feature.dbxref_id,
  16802. feature.organism_id,
  16803. feature.name,
  16804. feature.uniquename,
  16805. feature.residues,
  16806. feature.seqlen,
  16807. feature.md5checksum,
  16808. feature.type_id,
  16809. feature.is_analysis,
  16810. feature.is_obsolete,
  16811. feature.timeaccessioned,
  16812. feature.timelastmodified
  16813. FROM (feature
  16814. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16815. WHERE ((cvterm.name)::text = 'five_prime_EST'::text);
  16816. --
  16817. -- Name: five_prime_five_prime_overlap; Type: VIEW; Schema: so; Owner: -
  16818. --
  16819. CREATE VIEW five_prime_five_prime_overlap AS
  16820. SELECT feature.feature_id AS five_prime_five_prime_overlap_id,
  16821. feature.feature_id,
  16822. feature.dbxref_id,
  16823. feature.organism_id,
  16824. feature.name,
  16825. feature.uniquename,
  16826. feature.residues,
  16827. feature.seqlen,
  16828. feature.md5checksum,
  16829. feature.type_id,
  16830. feature.is_analysis,
  16831. feature.is_obsolete,
  16832. feature.timeaccessioned,
  16833. feature.timelastmodified
  16834. FROM (feature
  16835. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16836. WHERE ((cvterm.name)::text = 'five_prime_five_prime_overlap'::text);
  16837. --
  16838. -- Name: five_prime_flanking_region; Type: VIEW; Schema: so; Owner: -
  16839. --
  16840. CREATE VIEW five_prime_flanking_region AS
  16841. SELECT feature.feature_id AS five_prime_flanking_region_id,
  16842. feature.feature_id,
  16843. feature.dbxref_id,
  16844. feature.organism_id,
  16845. feature.name,
  16846. feature.uniquename,
  16847. feature.residues,
  16848. feature.seqlen,
  16849. feature.md5checksum,
  16850. feature.type_id,
  16851. feature.is_analysis,
  16852. feature.is_obsolete,
  16853. feature.timeaccessioned,
  16854. feature.timelastmodified
  16855. FROM (feature
  16856. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16857. WHERE ((cvterm.name)::text = 'five_prime_flanking_region'::text);
  16858. --
  16859. -- Name: five_prime_intron; Type: VIEW; Schema: so; Owner: -
  16860. --
  16861. CREATE VIEW five_prime_intron AS
  16862. SELECT feature.feature_id AS five_prime_intron_id,
  16863. feature.feature_id,
  16864. feature.dbxref_id,
  16865. feature.organism_id,
  16866. feature.name,
  16867. feature.uniquename,
  16868. feature.residues,
  16869. feature.seqlen,
  16870. feature.md5checksum,
  16871. feature.type_id,
  16872. feature.is_analysis,
  16873. feature.is_obsolete,
  16874. feature.timeaccessioned,
  16875. feature.timelastmodified
  16876. FROM (feature
  16877. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16878. WHERE ((cvterm.name)::text = 'five_prime_intron'::text);
  16879. --
  16880. -- Name: five_prime_ltr; Type: VIEW; Schema: so; Owner: -
  16881. --
  16882. CREATE VIEW five_prime_ltr AS
  16883. SELECT feature.feature_id AS five_prime_ltr_id,
  16884. feature.feature_id,
  16885. feature.dbxref_id,
  16886. feature.organism_id,
  16887. feature.name,
  16888. feature.uniquename,
  16889. feature.residues,
  16890. feature.seqlen,
  16891. feature.md5checksum,
  16892. feature.type_id,
  16893. feature.is_analysis,
  16894. feature.is_obsolete,
  16895. feature.timeaccessioned,
  16896. feature.timelastmodified
  16897. FROM (feature
  16898. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16899. WHERE ((cvterm.name)::text = 'five_prime_LTR'::text);
  16900. --
  16901. -- Name: five_prime_ltr_component; Type: VIEW; Schema: so; Owner: -
  16902. --
  16903. CREATE VIEW five_prime_ltr_component AS
  16904. SELECT feature.feature_id AS five_prime_ltr_component_id,
  16905. feature.feature_id,
  16906. feature.dbxref_id,
  16907. feature.organism_id,
  16908. feature.name,
  16909. feature.uniquename,
  16910. feature.residues,
  16911. feature.seqlen,
  16912. feature.md5checksum,
  16913. feature.type_id,
  16914. feature.is_analysis,
  16915. feature.is_obsolete,
  16916. feature.timeaccessioned,
  16917. feature.timelastmodified
  16918. FROM (feature
  16919. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16920. WHERE (((((cvterm.name)::text = 'R_five_prime_LTR_region'::text) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'five_prime_LTR_component'::text));
  16921. --
  16922. -- Name: five_prime_noncoding_exon; Type: VIEW; Schema: so; Owner: -
  16923. --
  16924. CREATE VIEW five_prime_noncoding_exon AS
  16925. SELECT feature.feature_id AS five_prime_noncoding_exon_id,
  16926. feature.feature_id,
  16927. feature.dbxref_id,
  16928. feature.organism_id,
  16929. feature.name,
  16930. feature.uniquename,
  16931. feature.residues,
  16932. feature.seqlen,
  16933. feature.md5checksum,
  16934. feature.type_id,
  16935. feature.is_analysis,
  16936. feature.is_obsolete,
  16937. feature.timeaccessioned,
  16938. feature.timelastmodified
  16939. FROM (feature
  16940. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16941. WHERE ((cvterm.name)::text = 'five_prime_noncoding_exon'::text);
  16942. --
  16943. -- Name: five_prime_open_reading_frame; Type: VIEW; Schema: so; Owner: -
  16944. --
  16945. CREATE VIEW five_prime_open_reading_frame AS
  16946. SELECT feature.feature_id AS five_prime_open_reading_frame_id,
  16947. feature.feature_id,
  16948. feature.dbxref_id,
  16949. feature.organism_id,
  16950. feature.name,
  16951. feature.uniquename,
  16952. feature.residues,
  16953. feature.seqlen,
  16954. feature.md5checksum,
  16955. feature.type_id,
  16956. feature.is_analysis,
  16957. feature.is_obsolete,
  16958. feature.timeaccessioned,
  16959. feature.timelastmodified
  16960. FROM (feature
  16961. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16962. WHERE ((cvterm.name)::text = 'five_prime_open_reading_frame'::text);
  16963. --
  16964. -- Name: five_prime_recoding_site; Type: VIEW; Schema: so; Owner: -
  16965. --
  16966. CREATE VIEW five_prime_recoding_site AS
  16967. SELECT feature.feature_id AS five_prime_recoding_site_id,
  16968. feature.feature_id,
  16969. feature.dbxref_id,
  16970. feature.organism_id,
  16971. feature.name,
  16972. feature.uniquename,
  16973. feature.residues,
  16974. feature.seqlen,
  16975. feature.md5checksum,
  16976. feature.type_id,
  16977. feature.is_analysis,
  16978. feature.is_obsolete,
  16979. feature.timeaccessioned,
  16980. feature.timelastmodified
  16981. FROM (feature
  16982. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  16983. WHERE ((cvterm.name)::text = 'five_prime_recoding_site'::text);
  16984. --
  16985. -- Name: five_prime_restriction_enzyme_junction; Type: VIEW; Schema: so; Owner: -
  16986. --
  16987. CREATE VIEW five_prime_restriction_enzyme_junction AS
  16988. SELECT feature.feature_id AS five_prime_restriction_enzyme_junction_id,
  16989. feature.feature_id,
  16990. feature.dbxref_id,
  16991. feature.organism_id,
  16992. feature.name,
  16993. feature.uniquename,
  16994. feature.residues,
  16995. feature.seqlen,
  16996. feature.md5checksum,
  16997. feature.type_id,
  16998. feature.is_analysis,
  16999. feature.is_obsolete,
  17000. feature.timeaccessioned,
  17001. feature.timelastmodified
  17002. FROM (feature
  17003. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17004. WHERE ((cvterm.name)::text = 'five_prime_restriction_enzyme_junction'::text);
  17005. --
  17006. -- Name: five_prime_rst; Type: VIEW; Schema: so; Owner: -
  17007. --
  17008. CREATE VIEW five_prime_rst AS
  17009. SELECT feature.feature_id AS five_prime_rst_id,
  17010. feature.feature_id,
  17011. feature.dbxref_id,
  17012. feature.organism_id,
  17013. feature.name,
  17014. feature.uniquename,
  17015. feature.residues,
  17016. feature.seqlen,
  17017. feature.md5checksum,
  17018. feature.type_id,
  17019. feature.is_analysis,
  17020. feature.is_obsolete,
  17021. feature.timeaccessioned,
  17022. feature.timelastmodified
  17023. FROM (feature
  17024. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17025. WHERE ((cvterm.name)::text = 'five_prime_RST'::text);
  17026. --
  17027. -- Name: five_prime_terminal_inverted_repeat; Type: VIEW; Schema: so; Owner: -
  17028. --
  17029. CREATE VIEW five_prime_terminal_inverted_repeat AS
  17030. SELECT feature.feature_id AS five_prime_terminal_inverted_repeat_id,
  17031. feature.feature_id,
  17032. feature.dbxref_id,
  17033. feature.organism_id,
  17034. feature.name,
  17035. feature.uniquename,
  17036. feature.residues,
  17037. feature.seqlen,
  17038. feature.md5checksum,
  17039. feature.type_id,
  17040. feature.is_analysis,
  17041. feature.is_obsolete,
  17042. feature.timeaccessioned,
  17043. feature.timelastmodified
  17044. FROM (feature
  17045. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17046. WHERE ((cvterm.name)::text = 'five_prime_terminal_inverted_repeat'::text);
  17047. --
  17048. -- Name: five_prime_three_prime_overlap; Type: VIEW; Schema: so; Owner: -
  17049. --
  17050. CREATE VIEW five_prime_three_prime_overlap AS
  17051. SELECT feature.feature_id AS five_prime_three_prime_overlap_id,
  17052. feature.feature_id,
  17053. feature.dbxref_id,
  17054. feature.organism_id,
  17055. feature.name,
  17056. feature.uniquename,
  17057. feature.residues,
  17058. feature.seqlen,
  17059. feature.md5checksum,
  17060. feature.type_id,
  17061. feature.is_analysis,
  17062. feature.is_obsolete,
  17063. feature.timeaccessioned,
  17064. feature.timelastmodified
  17065. FROM (feature
  17066. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17067. WHERE ((cvterm.name)::text = 'five_prime_three_prime_overlap'::text);
  17068. --
  17069. -- Name: five_prime_ust; Type: VIEW; Schema: so; Owner: -
  17070. --
  17071. CREATE VIEW five_prime_ust AS
  17072. SELECT feature.feature_id AS five_prime_ust_id,
  17073. feature.feature_id,
  17074. feature.dbxref_id,
  17075. feature.organism_id,
  17076. feature.name,
  17077. feature.uniquename,
  17078. feature.residues,
  17079. feature.seqlen,
  17080. feature.md5checksum,
  17081. feature.type_id,
  17082. feature.is_analysis,
  17083. feature.is_obsolete,
  17084. feature.timeaccessioned,
  17085. feature.timelastmodified
  17086. FROM (feature
  17087. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17088. WHERE ((cvterm.name)::text = 'five_prime_UST'::text);
  17089. --
  17090. -- Name: five_prime_utr; Type: VIEW; Schema: so; Owner: -
  17091. --
  17092. CREATE VIEW five_prime_utr AS
  17093. SELECT feature.feature_id AS five_prime_utr_id,
  17094. feature.feature_id,
  17095. feature.dbxref_id,
  17096. feature.organism_id,
  17097. feature.name,
  17098. feature.uniquename,
  17099. feature.residues,
  17100. feature.seqlen,
  17101. feature.md5checksum,
  17102. feature.type_id,
  17103. feature.is_analysis,
  17104. feature.is_obsolete,
  17105. feature.timeaccessioned,
  17106. feature.timelastmodified
  17107. FROM (feature
  17108. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17109. WHERE ((cvterm.name)::text = 'five_prime_UTR'::text);
  17110. --
  17111. -- Name: five_prime_utr_intron; Type: VIEW; Schema: so; Owner: -
  17112. --
  17113. CREATE VIEW five_prime_utr_intron AS
  17114. SELECT feature.feature_id AS five_prime_utr_intron_id,
  17115. feature.feature_id,
  17116. feature.dbxref_id,
  17117. feature.organism_id,
  17118. feature.name,
  17119. feature.uniquename,
  17120. feature.residues,
  17121. feature.seqlen,
  17122. feature.md5checksum,
  17123. feature.type_id,
  17124. feature.is_analysis,
  17125. feature.is_obsolete,
  17126. feature.timeaccessioned,
  17127. feature.timelastmodified
  17128. FROM (feature
  17129. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17130. WHERE ((cvterm.name)::text = 'five_prime_UTR_intron'::text);
  17131. --
  17132. -- Name: five_prime_utr_variant; Type: VIEW; Schema: so; Owner: -
  17133. --
  17134. CREATE VIEW five_prime_utr_variant AS
  17135. SELECT feature.feature_id AS five_prime_utr_variant_id,
  17136. feature.feature_id,
  17137. feature.dbxref_id,
  17138. feature.organism_id,
  17139. feature.name,
  17140. feature.uniquename,
  17141. feature.residues,
  17142. feature.seqlen,
  17143. feature.md5checksum,
  17144. feature.type_id,
  17145. feature.is_analysis,
  17146. feature.is_obsolete,
  17147. feature.timeaccessioned,
  17148. feature.timelastmodified
  17149. FROM (feature
  17150. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17151. WHERE ((cvterm.name)::text = '5_prime_UTR_variant'::text);
  17152. --
  17153. -- Name: five_taurinomethyl_two_thiouridine; Type: VIEW; Schema: so; Owner: -
  17154. --
  17155. CREATE VIEW five_taurinomethyl_two_thiouridine AS
  17156. SELECT feature.feature_id AS five_taurinomethyl_two_thiouridine_id,
  17157. feature.feature_id,
  17158. feature.dbxref_id,
  17159. feature.organism_id,
  17160. feature.name,
  17161. feature.uniquename,
  17162. feature.residues,
  17163. feature.seqlen,
  17164. feature.md5checksum,
  17165. feature.type_id,
  17166. feature.is_analysis,
  17167. feature.is_obsolete,
  17168. feature.timeaccessioned,
  17169. feature.timelastmodified
  17170. FROM (feature
  17171. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17172. WHERE ((cvterm.name)::text = 'five_taurinomethyl_two_thiouridine'::text);
  17173. --
  17174. -- Name: five_taurinomethyluridine; Type: VIEW; Schema: so; Owner: -
  17175. --
  17176. CREATE VIEW five_taurinomethyluridine AS
  17177. SELECT feature.feature_id AS five_taurinomethyluridine_id,
  17178. feature.feature_id,
  17179. feature.dbxref_id,
  17180. feature.organism_id,
  17181. feature.name,
  17182. feature.uniquename,
  17183. feature.residues,
  17184. feature.seqlen,
  17185. feature.md5checksum,
  17186. feature.type_id,
  17187. feature.is_analysis,
  17188. feature.is_obsolete,
  17189. feature.timeaccessioned,
  17190. feature.timelastmodified
  17191. FROM (feature
  17192. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17193. WHERE ((cvterm.name)::text = 'five_taurinomethyluridine'::text);
  17194. --
  17195. -- Name: five_two_prime_o_dimethylcytidine; Type: VIEW; Schema: so; Owner: -
  17196. --
  17197. CREATE VIEW five_two_prime_o_dimethylcytidine AS
  17198. SELECT feature.feature_id AS five_two_prime_o_dimethylcytidine_id,
  17199. feature.feature_id,
  17200. feature.dbxref_id,
  17201. feature.organism_id,
  17202. feature.name,
  17203. feature.uniquename,
  17204. feature.residues,
  17205. feature.seqlen,
  17206. feature.md5checksum,
  17207. feature.type_id,
  17208. feature.is_analysis,
  17209. feature.is_obsolete,
  17210. feature.timeaccessioned,
  17211. feature.timelastmodified
  17212. FROM (feature
  17213. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17214. WHERE ((cvterm.name)::text = 'five_two_prime_O_dimethylcytidine'::text);
  17215. --
  17216. -- Name: five_two_prime_o_dimethyluridine; Type: VIEW; Schema: so; Owner: -
  17217. --
  17218. CREATE VIEW five_two_prime_o_dimethyluridine AS
  17219. SELECT feature.feature_id AS five_two_prime_o_dimethyluridine_id,
  17220. feature.feature_id,
  17221. feature.dbxref_id,
  17222. feature.organism_id,
  17223. feature.name,
  17224. feature.uniquename,
  17225. feature.residues,
  17226. feature.seqlen,
  17227. feature.md5checksum,
  17228. feature.type_id,
  17229. feature.is_analysis,
  17230. feature.is_obsolete,
  17231. feature.timeaccessioned,
  17232. feature.timelastmodified
  17233. FROM (feature
  17234. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17235. WHERE ((cvterm.name)::text = 'five_two_prime_O_dimethyluridine'::text);
  17236. --
  17237. -- Name: fivehundred_b_downstream_variant; Type: VIEW; Schema: so; Owner: -
  17238. --
  17239. CREATE VIEW fivehundred_b_downstream_variant AS
  17240. SELECT feature.feature_id AS fivehundred_b_downstream_variant_id,
  17241. feature.feature_id,
  17242. feature.dbxref_id,
  17243. feature.organism_id,
  17244. feature.name,
  17245. feature.uniquename,
  17246. feature.residues,
  17247. feature.seqlen,
  17248. feature.md5checksum,
  17249. feature.type_id,
  17250. feature.is_analysis,
  17251. feature.is_obsolete,
  17252. feature.timeaccessioned,
  17253. feature.timelastmodified
  17254. FROM (feature
  17255. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17256. WHERE ((cvterm.name)::text = '500B_downstream_variant'::text);
  17257. --
  17258. -- Name: fivekb_downstream_variant; Type: VIEW; Schema: so; Owner: -
  17259. --
  17260. CREATE VIEW fivekb_downstream_variant AS
  17261. SELECT feature.feature_id AS fivekb_downstream_variant_id,
  17262. feature.feature_id,
  17263. feature.dbxref_id,
  17264. feature.organism_id,
  17265. feature.name,
  17266. feature.uniquename,
  17267. feature.residues,
  17268. feature.seqlen,
  17269. feature.md5checksum,
  17270. feature.type_id,
  17271. feature.is_analysis,
  17272. feature.is_obsolete,
  17273. feature.timeaccessioned,
  17274. feature.timelastmodified
  17275. FROM (feature
  17276. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17277. WHERE (((cvterm.name)::text = '500B_downstream_variant'::text) OR ((cvterm.name)::text = '5KB_downstream_variant'::text));
  17278. --
  17279. -- Name: fivekb_upstream_variant; Type: VIEW; Schema: so; Owner: -
  17280. --
  17281. CREATE VIEW fivekb_upstream_variant AS
  17282. SELECT feature.feature_id AS fivekb_upstream_variant_id,
  17283. feature.feature_id,
  17284. feature.dbxref_id,
  17285. feature.organism_id,
  17286. feature.name,
  17287. feature.uniquename,
  17288. feature.residues,
  17289. feature.seqlen,
  17290. feature.md5checksum,
  17291. feature.type_id,
  17292. feature.is_analysis,
  17293. feature.is_obsolete,
  17294. feature.timeaccessioned,
  17295. feature.timelastmodified
  17296. FROM (feature
  17297. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17298. WHERE (((cvterm.name)::text = '2KB_upstream_variant'::text) OR ((cvterm.name)::text = '5KB_upstream_variant'::text));
  17299. --
  17300. -- Name: fixed_variant; Type: VIEW; Schema: so; Owner: -
  17301. --
  17302. CREATE VIEW fixed_variant AS
  17303. SELECT feature.feature_id AS fixed_variant_id,
  17304. feature.feature_id,
  17305. feature.dbxref_id,
  17306. feature.organism_id,
  17307. feature.name,
  17308. feature.uniquename,
  17309. feature.residues,
  17310. feature.seqlen,
  17311. feature.md5checksum,
  17312. feature.type_id,
  17313. feature.is_analysis,
  17314. feature.is_obsolete,
  17315. feature.timeaccessioned,
  17316. feature.timelastmodified
  17317. FROM (feature
  17318. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17319. WHERE ((cvterm.name)::text = 'fixed_variant'::text);
  17320. --
  17321. -- Name: flanked; Type: VIEW; Schema: so; Owner: -
  17322. --
  17323. CREATE VIEW flanked AS
  17324. SELECT feature.feature_id AS flanked_id,
  17325. feature.feature_id,
  17326. feature.dbxref_id,
  17327. feature.organism_id,
  17328. feature.name,
  17329. feature.uniquename,
  17330. feature.residues,
  17331. feature.seqlen,
  17332. feature.md5checksum,
  17333. feature.type_id,
  17334. feature.is_analysis,
  17335. feature.is_obsolete,
  17336. feature.timeaccessioned,
  17337. feature.timelastmodified
  17338. FROM (feature
  17339. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17340. WHERE ((((cvterm.name)::text = 'floxed'::text) OR ((cvterm.name)::text = 'FRT_flanked'::text)) OR ((cvterm.name)::text = 'flanked'::text));
  17341. --
  17342. -- Name: flanking_region; Type: VIEW; Schema: so; Owner: -
  17343. --
  17344. CREATE VIEW flanking_region AS
  17345. SELECT feature.feature_id AS flanking_region_id,
  17346. feature.feature_id,
  17347. feature.dbxref_id,
  17348. feature.organism_id,
  17349. feature.name,
  17350. feature.uniquename,
  17351. feature.residues,
  17352. feature.seqlen,
  17353. feature.md5checksum,
  17354. feature.type_id,
  17355. feature.is_analysis,
  17356. feature.is_obsolete,
  17357. feature.timeaccessioned,
  17358. feature.timelastmodified
  17359. FROM (feature
  17360. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17361. WHERE (((((cvterm.name)::text = 'transposable_element_flanking_region'::text) OR ((cvterm.name)::text = 'five_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'three_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'flanking_region'::text));
  17362. --
  17363. -- Name: flanking_three_prime_quadruplet_recoding_signal; Type: VIEW; Schema: so; Owner: -
  17364. --
  17365. CREATE VIEW flanking_three_prime_quadruplet_recoding_signal AS
  17366. SELECT feature.feature_id AS flanking_three_prime_quadruplet_recoding_signal_id,
  17367. feature.feature_id,
  17368. feature.dbxref_id,
  17369. feature.organism_id,
  17370. feature.name,
  17371. feature.uniquename,
  17372. feature.residues,
  17373. feature.seqlen,
  17374. feature.md5checksum,
  17375. feature.type_id,
  17376. feature.is_analysis,
  17377. feature.is_obsolete,
  17378. feature.timeaccessioned,
  17379. feature.timelastmodified
  17380. FROM (feature
  17381. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17382. WHERE ((cvterm.name)::text = 'flanking_three_prime_quadruplet_recoding_signal'::text);
  17383. --
  17384. -- Name: floxed; Type: VIEW; Schema: so; Owner: -
  17385. --
  17386. CREATE VIEW floxed AS
  17387. SELECT feature.feature_id AS floxed_id,
  17388. feature.feature_id,
  17389. feature.dbxref_id,
  17390. feature.organism_id,
  17391. feature.name,
  17392. feature.uniquename,
  17393. feature.residues,
  17394. feature.seqlen,
  17395. feature.md5checksum,
  17396. feature.type_id,
  17397. feature.is_analysis,
  17398. feature.is_obsolete,
  17399. feature.timeaccessioned,
  17400. feature.timelastmodified
  17401. FROM (feature
  17402. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17403. WHERE ((cvterm.name)::text = 'floxed'::text);
  17404. --
  17405. -- Name: floxed_gene; Type: VIEW; Schema: so; Owner: -
  17406. --
  17407. CREATE VIEW floxed_gene AS
  17408. SELECT feature.feature_id AS floxed_gene_id,
  17409. feature.feature_id,
  17410. feature.dbxref_id,
  17411. feature.organism_id,
  17412. feature.name,
  17413. feature.uniquename,
  17414. feature.residues,
  17415. feature.seqlen,
  17416. feature.md5checksum,
  17417. feature.type_id,
  17418. feature.is_analysis,
  17419. feature.is_obsolete,
  17420. feature.timeaccessioned,
  17421. feature.timelastmodified
  17422. FROM (feature
  17423. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17424. WHERE ((cvterm.name)::text = 'floxed_gene'::text);
  17425. --
  17426. -- Name: foldback_element; Type: VIEW; Schema: so; Owner: -
  17427. --
  17428. CREATE VIEW foldback_element AS
  17429. SELECT feature.feature_id AS foldback_element_id,
  17430. feature.feature_id,
  17431. feature.dbxref_id,
  17432. feature.organism_id,
  17433. feature.name,
  17434. feature.uniquename,
  17435. feature.residues,
  17436. feature.seqlen,
  17437. feature.md5checksum,
  17438. feature.type_id,
  17439. feature.is_analysis,
  17440. feature.is_obsolete,
  17441. feature.timeaccessioned,
  17442. feature.timelastmodified
  17443. FROM (feature
  17444. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17445. WHERE ((cvterm.name)::text = 'foldback_element'::text);
  17446. --
  17447. -- Name: foreign_gene; Type: VIEW; Schema: so; Owner: -
  17448. --
  17449. CREATE VIEW foreign_gene AS
  17450. SELECT feature.feature_id AS foreign_gene_id,
  17451. feature.feature_id,
  17452. feature.dbxref_id,
  17453. feature.organism_id,
  17454. feature.name,
  17455. feature.uniquename,
  17456. feature.residues,
  17457. feature.seqlen,
  17458. feature.md5checksum,
  17459. feature.type_id,
  17460. feature.is_analysis,
  17461. feature.is_obsolete,
  17462. feature.timeaccessioned,
  17463. feature.timelastmodified
  17464. FROM (feature
  17465. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17466. WHERE ((((cvterm.name)::text = 'engineered_foreign_gene'::text) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'foreign_gene'::text));
  17467. --
  17468. -- Name: foreign_transposable_element; Type: VIEW; Schema: so; Owner: -
  17469. --
  17470. CREATE VIEW foreign_transposable_element AS
  17471. SELECT feature.feature_id AS foreign_transposable_element_id,
  17472. feature.feature_id,
  17473. feature.dbxref_id,
  17474. feature.organism_id,
  17475. feature.name,
  17476. feature.uniquename,
  17477. feature.residues,
  17478. feature.seqlen,
  17479. feature.md5checksum,
  17480. feature.type_id,
  17481. feature.is_analysis,
  17482. feature.is_obsolete,
  17483. feature.timeaccessioned,
  17484. feature.timelastmodified
  17485. FROM (feature
  17486. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17487. WHERE (((cvterm.name)::text = 'engineered_foreign_transposable_element'::text) OR ((cvterm.name)::text = 'foreign_transposable_element'::text));
  17488. --
  17489. -- Name: forward; Type: VIEW; Schema: so; Owner: -
  17490. --
  17491. CREATE VIEW forward AS
  17492. SELECT feature.feature_id AS forward_id,
  17493. feature.feature_id,
  17494. feature.dbxref_id,
  17495. feature.organism_id,
  17496. feature.name,
  17497. feature.uniquename,
  17498. feature.residues,
  17499. feature.seqlen,
  17500. feature.md5checksum,
  17501. feature.type_id,
  17502. feature.is_analysis,
  17503. feature.is_obsolete,
  17504. feature.timeaccessioned,
  17505. feature.timelastmodified
  17506. FROM (feature
  17507. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17508. WHERE ((cvterm.name)::text = 'forward'::text);
  17509. --
  17510. -- Name: forward_primer; Type: VIEW; Schema: so; Owner: -
  17511. --
  17512. CREATE VIEW forward_primer AS
  17513. SELECT feature.feature_id AS forward_primer_id,
  17514. feature.feature_id,
  17515. feature.dbxref_id,
  17516. feature.organism_id,
  17517. feature.name,
  17518. feature.uniquename,
  17519. feature.residues,
  17520. feature.seqlen,
  17521. feature.md5checksum,
  17522. feature.type_id,
  17523. feature.is_analysis,
  17524. feature.is_obsolete,
  17525. feature.timeaccessioned,
  17526. feature.timelastmodified
  17527. FROM (feature
  17528. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17529. WHERE ((cvterm.name)::text = 'forward_primer'::text);
  17530. --
  17531. -- Name: fosmid; Type: VIEW; Schema: so; Owner: -
  17532. --
  17533. CREATE VIEW fosmid AS
  17534. SELECT feature.feature_id AS fosmid_id,
  17535. feature.feature_id,
  17536. feature.dbxref_id,
  17537. feature.organism_id,
  17538. feature.name,
  17539. feature.uniquename,
  17540. feature.residues,
  17541. feature.seqlen,
  17542. feature.md5checksum,
  17543. feature.type_id,
  17544. feature.is_analysis,
  17545. feature.is_obsolete,
  17546. feature.timeaccessioned,
  17547. feature.timelastmodified
  17548. FROM (feature
  17549. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17550. WHERE ((cvterm.name)::text = 'fosmid'::text);
  17551. --
  17552. -- Name: four_bp_start_codon; Type: VIEW; Schema: so; Owner: -
  17553. --
  17554. CREATE VIEW four_bp_start_codon AS
  17555. SELECT feature.feature_id AS four_bp_start_codon_id,
  17556. feature.feature_id,
  17557. feature.dbxref_id,
  17558. feature.organism_id,
  17559. feature.name,
  17560. feature.uniquename,
  17561. feature.residues,
  17562. feature.seqlen,
  17563. feature.md5checksum,
  17564. feature.type_id,
  17565. feature.is_analysis,
  17566. feature.is_obsolete,
  17567. feature.timeaccessioned,
  17568. feature.timelastmodified
  17569. FROM (feature
  17570. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17571. WHERE ((cvterm.name)::text = 'four_bp_start_codon'::text);
  17572. --
  17573. -- Name: four_demethylwyosine; Type: VIEW; Schema: so; Owner: -
  17574. --
  17575. CREATE VIEW four_demethylwyosine AS
  17576. SELECT feature.feature_id AS four_demethylwyosine_id,
  17577. feature.feature_id,
  17578. feature.dbxref_id,
  17579. feature.organism_id,
  17580. feature.name,
  17581. feature.uniquename,
  17582. feature.residues,
  17583. feature.seqlen,
  17584. feature.md5checksum,
  17585. feature.type_id,
  17586. feature.is_analysis,
  17587. feature.is_obsolete,
  17588. feature.timeaccessioned,
  17589. feature.timelastmodified
  17590. FROM (feature
  17591. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17592. WHERE ((cvterm.name)::text = 'four_demethylwyosine'::text);
  17593. --
  17594. -- Name: four_thiouridine; Type: VIEW; Schema: so; Owner: -
  17595. --
  17596. CREATE VIEW four_thiouridine AS
  17597. SELECT feature.feature_id AS four_thiouridine_id,
  17598. feature.feature_id,
  17599. feature.dbxref_id,
  17600. feature.organism_id,
  17601. feature.name,
  17602. feature.uniquename,
  17603. feature.residues,
  17604. feature.seqlen,
  17605. feature.md5checksum,
  17606. feature.type_id,
  17607. feature.is_analysis,
  17608. feature.is_obsolete,
  17609. feature.timeaccessioned,
  17610. feature.timelastmodified
  17611. FROM (feature
  17612. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17613. WHERE ((cvterm.name)::text = 'four_thiouridine'::text);
  17614. --
  17615. -- Name: fragment_assembly; Type: VIEW; Schema: so; Owner: -
  17616. --
  17617. CREATE VIEW fragment_assembly AS
  17618. SELECT feature.feature_id AS fragment_assembly_id,
  17619. feature.feature_id,
  17620. feature.dbxref_id,
  17621. feature.organism_id,
  17622. feature.name,
  17623. feature.uniquename,
  17624. feature.residues,
  17625. feature.seqlen,
  17626. feature.md5checksum,
  17627. feature.type_id,
  17628. feature.is_analysis,
  17629. feature.is_obsolete,
  17630. feature.timeaccessioned,
  17631. feature.timelastmodified
  17632. FROM (feature
  17633. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17634. WHERE (((((cvterm.name)::text = 'fingerprint_map'::text) OR ((cvterm.name)::text = 'STS_map'::text)) OR ((cvterm.name)::text = 'RH_map'::text)) OR ((cvterm.name)::text = 'fragment_assembly'::text));
  17635. --
  17636. -- Name: fragmentary; Type: VIEW; Schema: so; Owner: -
  17637. --
  17638. CREATE VIEW fragmentary AS
  17639. SELECT feature.feature_id AS fragmentary_id,
  17640. feature.feature_id,
  17641. feature.dbxref_id,
  17642. feature.organism_id,
  17643. feature.name,
  17644. feature.uniquename,
  17645. feature.residues,
  17646. feature.seqlen,
  17647. feature.md5checksum,
  17648. feature.type_id,
  17649. feature.is_analysis,
  17650. feature.is_obsolete,
  17651. feature.timeaccessioned,
  17652. feature.timelastmodified
  17653. FROM (feature
  17654. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17655. WHERE ((cvterm.name)::text = 'fragmentary'::text);
  17656. --
  17657. -- Name: frame_restoring_variant; Type: VIEW; Schema: so; Owner: -
  17658. --
  17659. CREATE VIEW frame_restoring_variant AS
  17660. SELECT feature.feature_id AS frame_restoring_variant_id,
  17661. feature.feature_id,
  17662. feature.dbxref_id,
  17663. feature.organism_id,
  17664. feature.name,
  17665. feature.uniquename,
  17666. feature.residues,
  17667. feature.seqlen,
  17668. feature.md5checksum,
  17669. feature.type_id,
  17670. feature.is_analysis,
  17671. feature.is_obsolete,
  17672. feature.timeaccessioned,
  17673. feature.timelastmodified
  17674. FROM (feature
  17675. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17676. WHERE ((cvterm.name)::text = 'frame_restoring_variant'::text);
  17677. --
  17678. -- Name: frameshift; Type: VIEW; Schema: so; Owner: -
  17679. --
  17680. CREATE VIEW frameshift AS
  17681. SELECT feature.feature_id AS frameshift_id,
  17682. feature.feature_id,
  17683. feature.dbxref_id,
  17684. feature.organism_id,
  17685. feature.name,
  17686. feature.uniquename,
  17687. feature.residues,
  17688. feature.seqlen,
  17689. feature.md5checksum,
  17690. feature.type_id,
  17691. feature.is_analysis,
  17692. feature.is_obsolete,
  17693. feature.timeaccessioned,
  17694. feature.timelastmodified
  17695. FROM (feature
  17696. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17697. WHERE ((((((cvterm.name)::text = 'minus_1_frameshift'::text) OR ((cvterm.name)::text = 'minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_framshift'::text)) OR ((cvterm.name)::text = 'frameshift'::text));
  17698. --
  17699. -- Name: frameshift_variant; Type: VIEW; Schema: so; Owner: -
  17700. --
  17701. CREATE VIEW frameshift_variant AS
  17702. SELECT feature.feature_id AS frameshift_variant_id,
  17703. feature.feature_id,
  17704. feature.dbxref_id,
  17705. feature.organism_id,
  17706. feature.name,
  17707. feature.uniquename,
  17708. feature.residues,
  17709. feature.seqlen,
  17710. feature.md5checksum,
  17711. feature.type_id,
  17712. feature.is_analysis,
  17713. feature.is_obsolete,
  17714. feature.timeaccessioned,
  17715. feature.timelastmodified
  17716. FROM (feature
  17717. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17718. WHERE (((((((cvterm.name)::text = 'frame_restoring_variant'::text) OR ((cvterm.name)::text = 'minus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_2_frameshift variant'::text)) OR ((cvterm.name)::text = 'frameshift_variant'::text));
  17719. --
  17720. -- Name: free; Type: VIEW; Schema: so; Owner: -
  17721. --
  17722. CREATE VIEW free AS
  17723. SELECT feature.feature_id AS free_id,
  17724. feature.feature_id,
  17725. feature.dbxref_id,
  17726. feature.organism_id,
  17727. feature.name,
  17728. feature.uniquename,
  17729. feature.residues,
  17730. feature.seqlen,
  17731. feature.md5checksum,
  17732. feature.type_id,
  17733. feature.is_analysis,
  17734. feature.is_obsolete,
  17735. feature.timeaccessioned,
  17736. feature.timelastmodified
  17737. FROM (feature
  17738. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17739. WHERE ((cvterm.name)::text = 'free'::text);
  17740. --
  17741. -- Name: free_chromosome_arm; Type: VIEW; Schema: so; Owner: -
  17742. --
  17743. CREATE VIEW free_chromosome_arm AS
  17744. SELECT feature.feature_id AS free_chromosome_arm_id,
  17745. feature.feature_id,
  17746. feature.dbxref_id,
  17747. feature.organism_id,
  17748. feature.name,
  17749. feature.uniquename,
  17750. feature.residues,
  17751. feature.seqlen,
  17752. feature.md5checksum,
  17753. feature.type_id,
  17754. feature.is_analysis,
  17755. feature.is_obsolete,
  17756. feature.timeaccessioned,
  17757. feature.timelastmodified
  17758. FROM (feature
  17759. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17760. WHERE ((cvterm.name)::text = 'free_chromosome_arm'::text);
  17761. --
  17762. -- Name: free_duplication; Type: VIEW; Schema: so; Owner: -
  17763. --
  17764. CREATE VIEW free_duplication AS
  17765. SELECT feature.feature_id AS free_duplication_id,
  17766. feature.feature_id,
  17767. feature.dbxref_id,
  17768. feature.organism_id,
  17769. feature.name,
  17770. feature.uniquename,
  17771. feature.residues,
  17772. feature.seqlen,
  17773. feature.md5checksum,
  17774. feature.type_id,
  17775. feature.is_analysis,
  17776. feature.is_obsolete,
  17777. feature.timeaccessioned,
  17778. feature.timelastmodified
  17779. FROM (feature
  17780. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17781. WHERE (((cvterm.name)::text = 'free_ring_duplication'::text) OR ((cvterm.name)::text = 'free_duplication'::text));
  17782. --
  17783. -- Name: free_ring_duplication; Type: VIEW; Schema: so; Owner: -
  17784. --
  17785. CREATE VIEW free_ring_duplication AS
  17786. SELECT feature.feature_id AS free_ring_duplication_id,
  17787. feature.feature_id,
  17788. feature.dbxref_id,
  17789. feature.organism_id,
  17790. feature.name,
  17791. feature.uniquename,
  17792. feature.residues,
  17793. feature.seqlen,
  17794. feature.md5checksum,
  17795. feature.type_id,
  17796. feature.is_analysis,
  17797. feature.is_obsolete,
  17798. feature.timeaccessioned,
  17799. feature.timelastmodified
  17800. FROM (feature
  17801. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17802. WHERE ((cvterm.name)::text = 'free_ring_duplication'::text);
  17803. --
  17804. -- Name: frt_flanked; Type: VIEW; Schema: so; Owner: -
  17805. --
  17806. CREATE VIEW frt_flanked AS
  17807. SELECT feature.feature_id AS frt_flanked_id,
  17808. feature.feature_id,
  17809. feature.dbxref_id,
  17810. feature.organism_id,
  17811. feature.name,
  17812. feature.uniquename,
  17813. feature.residues,
  17814. feature.seqlen,
  17815. feature.md5checksum,
  17816. feature.type_id,
  17817. feature.is_analysis,
  17818. feature.is_obsolete,
  17819. feature.timeaccessioned,
  17820. feature.timelastmodified
  17821. FROM (feature
  17822. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17823. WHERE ((cvterm.name)::text = 'FRT_flanked'::text);
  17824. --
  17825. -- Name: frt_site; Type: VIEW; Schema: so; Owner: -
  17826. --
  17827. CREATE VIEW frt_site AS
  17828. SELECT feature.feature_id AS frt_site_id,
  17829. feature.feature_id,
  17830. feature.dbxref_id,
  17831. feature.organism_id,
  17832. feature.name,
  17833. feature.uniquename,
  17834. feature.residues,
  17835. feature.seqlen,
  17836. feature.md5checksum,
  17837. feature.type_id,
  17838. feature.is_analysis,
  17839. feature.is_obsolete,
  17840. feature.timeaccessioned,
  17841. feature.timelastmodified
  17842. FROM (feature
  17843. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17844. WHERE ((cvterm.name)::text = 'FRT_site'::text);
  17845. --
  17846. -- Name: functional_variant; Type: VIEW; Schema: so; Owner: -
  17847. --
  17848. CREATE VIEW functional_variant AS
  17849. SELECT feature.feature_id AS functional_variant_id,
  17850. feature.feature_id,
  17851. feature.dbxref_id,
  17852. feature.organism_id,
  17853. feature.name,
  17854. feature.uniquename,
  17855. feature.residues,
  17856. feature.seqlen,
  17857. feature.md5checksum,
  17858. feature.type_id,
  17859. feature.is_analysis,
  17860. feature.is_obsolete,
  17861. feature.timeaccessioned,
  17862. feature.timelastmodified
  17863. FROM (feature
  17864. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17865. WHERE ((((((((((((((((((((((((((((((cvterm.name)::text = 'transcript_function_variant'::text) OR ((cvterm.name)::text = 'translational_product_function_variant'::text)) OR ((cvterm.name)::text = 'level_of_transcript_variant'::text)) OR ((cvterm.name)::text = 'transcript_processing_variant'::text)) OR ((cvterm.name)::text = 'transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'transcription_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcript_level_variant'::text)) OR ((cvterm.name)::text = 'increased_transcript_level_variant'::text)) OR ((cvterm.name)::text = 'editing_variant'::text)) OR ((cvterm.name)::text = 'polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'increased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'decreased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'increased_transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'rate_of_transcription_variant'::text)) OR ((cvterm.name)::text = 'increased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'translational_product_level_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_function_variant'::text)) OR ((cvterm.name)::text = 'decreased_translational_product_level'::text)) OR ((cvterm.name)::text = 'increased_translational_product_level'::text)) OR ((cvterm.name)::text = 'polypeptide_gain_of_function_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_localization_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_loss_of_function_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_post_translational_processing_variant'::text)) OR ((cvterm.name)::text = 'inactive_ligand_binding_site'::text)) OR ((cvterm.name)::text = 'polypeptide_partial_loss_of_function'::text)) OR ((cvterm.name)::text = 'inactive_catalytic_site'::text)) OR ((cvterm.name)::text = 'functional_variant'::text));
  17866. --
  17867. -- Name: fusion; Type: VIEW; Schema: so; Owner: -
  17868. --
  17869. CREATE VIEW fusion AS
  17870. SELECT feature.feature_id AS fusion_id,
  17871. feature.feature_id,
  17872. feature.dbxref_id,
  17873. feature.organism_id,
  17874. feature.name,
  17875. feature.uniquename,
  17876. feature.residues,
  17877. feature.seqlen,
  17878. feature.md5checksum,
  17879. feature.type_id,
  17880. feature.is_analysis,
  17881. feature.is_obsolete,
  17882. feature.timeaccessioned,
  17883. feature.timelastmodified
  17884. FROM (feature
  17885. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17886. WHERE ((cvterm.name)::text = 'fusion'::text);
  17887. --
  17888. -- Name: fusion_gene; Type: VIEW; Schema: so; Owner: -
  17889. --
  17890. CREATE VIEW fusion_gene AS
  17891. SELECT feature.feature_id AS fusion_gene_id,
  17892. feature.feature_id,
  17893. feature.dbxref_id,
  17894. feature.organism_id,
  17895. feature.name,
  17896. feature.uniquename,
  17897. feature.residues,
  17898. feature.seqlen,
  17899. feature.md5checksum,
  17900. feature.type_id,
  17901. feature.is_analysis,
  17902. feature.is_obsolete,
  17903. feature.timeaccessioned,
  17904. feature.timelastmodified
  17905. FROM (feature
  17906. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17907. WHERE (((cvterm.name)::text = 'engineered_fusion_gene'::text) OR ((cvterm.name)::text = 'fusion_gene'::text));
  17908. --
  17909. -- Name: g_quartet; Type: VIEW; Schema: so; Owner: -
  17910. --
  17911. CREATE VIEW g_quartet AS
  17912. SELECT feature.feature_id AS g_quartet_id,
  17913. feature.feature_id,
  17914. feature.dbxref_id,
  17915. feature.organism_id,
  17916. feature.name,
  17917. feature.uniquename,
  17918. feature.residues,
  17919. feature.seqlen,
  17920. feature.md5checksum,
  17921. feature.type_id,
  17922. feature.is_analysis,
  17923. feature.is_obsolete,
  17924. feature.timeaccessioned,
  17925. feature.timelastmodified
  17926. FROM (feature
  17927. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17928. WHERE ((cvterm.name)::text = 'G_quartet'::text);
  17929. --
  17930. -- Name: g_to_a_transition; Type: VIEW; Schema: so; Owner: -
  17931. --
  17932. CREATE VIEW g_to_a_transition AS
  17933. SELECT feature.feature_id AS g_to_a_transition_id,
  17934. feature.feature_id,
  17935. feature.dbxref_id,
  17936. feature.organism_id,
  17937. feature.name,
  17938. feature.uniquename,
  17939. feature.residues,
  17940. feature.seqlen,
  17941. feature.md5checksum,
  17942. feature.type_id,
  17943. feature.is_analysis,
  17944. feature.is_obsolete,
  17945. feature.timeaccessioned,
  17946. feature.timelastmodified
  17947. FROM (feature
  17948. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17949. WHERE ((cvterm.name)::text = 'G_to_A_transition'::text);
  17950. --
  17951. -- Name: g_to_c_transversion; Type: VIEW; Schema: so; Owner: -
  17952. --
  17953. CREATE VIEW g_to_c_transversion AS
  17954. SELECT feature.feature_id AS g_to_c_transversion_id,
  17955. feature.feature_id,
  17956. feature.dbxref_id,
  17957. feature.organism_id,
  17958. feature.name,
  17959. feature.uniquename,
  17960. feature.residues,
  17961. feature.seqlen,
  17962. feature.md5checksum,
  17963. feature.type_id,
  17964. feature.is_analysis,
  17965. feature.is_obsolete,
  17966. feature.timeaccessioned,
  17967. feature.timelastmodified
  17968. FROM (feature
  17969. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17970. WHERE ((cvterm.name)::text = 'G_to_C_transversion'::text);
  17971. --
  17972. -- Name: g_to_t_transversion; Type: VIEW; Schema: so; Owner: -
  17973. --
  17974. CREATE VIEW g_to_t_transversion AS
  17975. SELECT feature.feature_id AS g_to_t_transversion_id,
  17976. feature.feature_id,
  17977. feature.dbxref_id,
  17978. feature.organism_id,
  17979. feature.name,
  17980. feature.uniquename,
  17981. feature.residues,
  17982. feature.seqlen,
  17983. feature.md5checksum,
  17984. feature.type_id,
  17985. feature.is_analysis,
  17986. feature.is_obsolete,
  17987. feature.timeaccessioned,
  17988. feature.timelastmodified
  17989. FROM (feature
  17990. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  17991. WHERE ((cvterm.name)::text = 'G_to_T_transversion'::text);
  17992. --
  17993. -- Name: gaga_motif; Type: VIEW; Schema: so; Owner: -
  17994. --
  17995. CREATE VIEW gaga_motif AS
  17996. SELECT feature.feature_id AS gaga_motif_id,
  17997. feature.feature_id,
  17998. feature.dbxref_id,
  17999. feature.organism_id,
  18000. feature.name,
  18001. feature.uniquename,
  18002. feature.residues,
  18003. feature.seqlen,
  18004. feature.md5checksum,
  18005. feature.type_id,
  18006. feature.is_analysis,
  18007. feature.is_obsolete,
  18008. feature.timeaccessioned,
  18009. feature.timelastmodified
  18010. FROM (feature
  18011. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18012. WHERE ((cvterm.name)::text = 'GAGA_motif'::text);
  18013. --
  18014. -- Name: galactosyl_queuosine; Type: VIEW; Schema: so; Owner: -
  18015. --
  18016. CREATE VIEW galactosyl_queuosine AS
  18017. SELECT feature.feature_id AS galactosyl_queuosine_id,
  18018. feature.feature_id,
  18019. feature.dbxref_id,
  18020. feature.organism_id,
  18021. feature.name,
  18022. feature.uniquename,
  18023. feature.residues,
  18024. feature.seqlen,
  18025. feature.md5checksum,
  18026. feature.type_id,
  18027. feature.is_analysis,
  18028. feature.is_obsolete,
  18029. feature.timeaccessioned,
  18030. feature.timelastmodified
  18031. FROM (feature
  18032. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18033. WHERE ((cvterm.name)::text = 'galactosyl_queuosine'::text);
  18034. --
  18035. -- Name: gamma_turn; Type: VIEW; Schema: so; Owner: -
  18036. --
  18037. CREATE VIEW gamma_turn AS
  18038. SELECT feature.feature_id AS gamma_turn_id,
  18039. feature.feature_id,
  18040. feature.dbxref_id,
  18041. feature.organism_id,
  18042. feature.name,
  18043. feature.uniquename,
  18044. feature.residues,
  18045. feature.seqlen,
  18046. feature.md5checksum,
  18047. feature.type_id,
  18048. feature.is_analysis,
  18049. feature.is_obsolete,
  18050. feature.timeaccessioned,
  18051. feature.timelastmodified
  18052. FROM (feature
  18053. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18054. WHERE ((((cvterm.name)::text = 'gamma_turn_classic'::text) OR ((cvterm.name)::text = 'gamma_turn_inverse'::text)) OR ((cvterm.name)::text = 'gamma_turn'::text));
  18055. --
  18056. -- Name: gamma_turn_classic; Type: VIEW; Schema: so; Owner: -
  18057. --
  18058. CREATE VIEW gamma_turn_classic AS
  18059. SELECT feature.feature_id AS gamma_turn_classic_id,
  18060. feature.feature_id,
  18061. feature.dbxref_id,
  18062. feature.organism_id,
  18063. feature.name,
  18064. feature.uniquename,
  18065. feature.residues,
  18066. feature.seqlen,
  18067. feature.md5checksum,
  18068. feature.type_id,
  18069. feature.is_analysis,
  18070. feature.is_obsolete,
  18071. feature.timeaccessioned,
  18072. feature.timelastmodified
  18073. FROM (feature
  18074. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18075. WHERE ((cvterm.name)::text = 'gamma_turn_classic'::text);
  18076. --
  18077. -- Name: gamma_turn_inverse; Type: VIEW; Schema: so; Owner: -
  18078. --
  18079. CREATE VIEW gamma_turn_inverse AS
  18080. SELECT feature.feature_id AS gamma_turn_inverse_id,
  18081. feature.feature_id,
  18082. feature.dbxref_id,
  18083. feature.organism_id,
  18084. feature.name,
  18085. feature.uniquename,
  18086. feature.residues,
  18087. feature.seqlen,
  18088. feature.md5checksum,
  18089. feature.type_id,
  18090. feature.is_analysis,
  18091. feature.is_obsolete,
  18092. feature.timeaccessioned,
  18093. feature.timelastmodified
  18094. FROM (feature
  18095. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18096. WHERE ((cvterm.name)::text = 'gamma_turn_inverse'::text);
  18097. --
  18098. -- Name: gap; Type: VIEW; Schema: so; Owner: -
  18099. --
  18100. CREATE VIEW gap AS
  18101. SELECT feature.feature_id AS gap_id,
  18102. feature.feature_id,
  18103. feature.dbxref_id,
  18104. feature.organism_id,
  18105. feature.name,
  18106. feature.uniquename,
  18107. feature.residues,
  18108. feature.seqlen,
  18109. feature.md5checksum,
  18110. feature.type_id,
  18111. feature.is_analysis,
  18112. feature.is_obsolete,
  18113. feature.timeaccessioned,
  18114. feature.timelastmodified
  18115. FROM (feature
  18116. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18117. WHERE ((cvterm.name)::text = 'gap'::text);
  18118. --
  18119. -- Name: gc_rich_promoter_region; Type: VIEW; Schema: so; Owner: -
  18120. --
  18121. CREATE VIEW gc_rich_promoter_region AS
  18122. SELECT feature.feature_id AS gc_rich_promoter_region_id,
  18123. feature.feature_id,
  18124. feature.dbxref_id,
  18125. feature.organism_id,
  18126. feature.name,
  18127. feature.uniquename,
  18128. feature.residues,
  18129. feature.seqlen,
  18130. feature.md5checksum,
  18131. feature.type_id,
  18132. feature.is_analysis,
  18133. feature.is_obsolete,
  18134. feature.timeaccessioned,
  18135. feature.timelastmodified
  18136. FROM (feature
  18137. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18138. WHERE ((cvterm.name)::text = 'GC_rich_promoter_region'::text);
  18139. --
  18140. -- Name: gcvb_rna; Type: VIEW; Schema: so; Owner: -
  18141. --
  18142. CREATE VIEW gcvb_rna AS
  18143. SELECT feature.feature_id AS gcvb_rna_id,
  18144. feature.feature_id,
  18145. feature.dbxref_id,
  18146. feature.organism_id,
  18147. feature.name,
  18148. feature.uniquename,
  18149. feature.residues,
  18150. feature.seqlen,
  18151. feature.md5checksum,
  18152. feature.type_id,
  18153. feature.is_analysis,
  18154. feature.is_obsolete,
  18155. feature.timeaccessioned,
  18156. feature.timelastmodified
  18157. FROM (feature
  18158. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18159. WHERE ((cvterm.name)::text = 'GcvB_RNA'::text);
  18160. --
  18161. -- Name: gene; Type: VIEW; Schema: so; Owner: -
  18162. --
  18163. CREATE VIEW gene AS
  18164. SELECT feature.feature_id AS gene_id,
  18165. feature.feature_id,
  18166. feature.dbxref_id,
  18167. feature.organism_id,
  18168. feature.name,
  18169. feature.uniquename,
  18170. feature.residues,
  18171. feature.seqlen,
  18172. feature.md5checksum,
  18173. feature.type_id,
  18174. feature.is_analysis,
  18175. feature.is_obsolete,
  18176. feature.timeaccessioned,
  18177. feature.timelastmodified
  18178. FROM (feature
  18179. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18180. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'nuclear_gene'::text) OR ((cvterm.name)::text = 'mt_gene'::text)) OR ((cvterm.name)::text = 'plastid_gene'::text)) OR ((cvterm.name)::text = 'nucleomorph_gene'::text)) OR ((cvterm.name)::text = 'plasmid_gene'::text)) OR ((cvterm.name)::text = 'proviral_gene'::text)) OR ((cvterm.name)::text = 'transposable_element_gene'::text)) OR ((cvterm.name)::text = 'silenced_gene'::text)) OR ((cvterm.name)::text = 'engineered_gene'::text)) OR ((cvterm.name)::text = 'foreign_gene'::text)) OR ((cvterm.name)::text = 'fusion_gene'::text)) OR ((cvterm.name)::text = 'recombinationally_rearranged_gene'::text)) OR ((cvterm.name)::text = 'gene_with_trans_spliced_transcript'::text)) OR ((cvterm.name)::text = 'gene_with_polycistronic_transcript'::text)) OR ((cvterm.name)::text = 'rescue_gene'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_gene'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated_gene'::text)) OR ((cvterm.name)::text = 'positively_autoregulated_gene'::text)) OR ((cvterm.name)::text = 'translationally_regulated_gene'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_gene'::text)) OR ((cvterm.name)::text = 'transgene'::text)) OR ((cvterm.name)::text = 'predicted_gene'::text)) OR ((cvterm.name)::text = 'protein_coding_gene'::text)) OR ((cvterm.name)::text = 'retrogene'::text)) OR ((cvterm.name)::text = 'ncRNA_gene'::text)) OR ((cvterm.name)::text = 'cryptic_gene'::text)) OR ((cvterm.name)::text = 'gene_with_non_canonical_start_codon'::text)) OR ((cvterm.name)::text = 'gene_cassette'::text)) OR ((cvterm.name)::text = 'kinetoplast_gene'::text)) OR ((cvterm.name)::text = 'maxicircle_gene'::text)) OR ((cvterm.name)::text = 'minicircle_gene'::text)) OR ((cvterm.name)::text = 'cryptogene'::text)) OR ((cvterm.name)::text = 'apicoplast_gene'::text)) OR ((cvterm.name)::text = 'ct_gene'::text)) OR ((cvterm.name)::text = 'chromoplast_gene'::text)) OR ((cvterm.name)::text = 'cyanelle_gene'::text)) OR ((cvterm.name)::text = 'leucoplast_gene'::text)) OR ((cvterm.name)::text = 'proplastid_gene'::text)) OR ((cvterm.name)::text = 'endogenous_retroviral_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_DNA_modification'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_fusion_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_fusion_gene'::text)) OR ((cvterm.name)::text = 'recombinationally_inverted_gene'::text)) OR ((cvterm.name)::text = 'recombinationally_rearranged_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'gene_with_dicistronic_transcript'::text)) OR ((cvterm.name)::text = 'gene_with_dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'gene_with_dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'wild_type_rescue_gene'::text)) OR ((cvterm.name)::text = 'gene_rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'paternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'allelically_excluded_gene'::text)) OR ((cvterm.name)::text = 'floxed_gene'::text)) OR ((cvterm.name)::text = 'gene_with_polyadenylated_mRNA'::text)) OR ((cvterm.name)::text = 'gene_with_mRNA_with_frameshift'::text)) OR ((cvterm.name)::text = 'gene_with_edited_transcript'::text)) OR ((cvterm.name)::text = 'gene_with_recoded_mRNA'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_read_through'::text)) OR ((cvterm.name)::text = 'gene_with_mRNA_recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'gene_with_transcript_with_translational_frameshift'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'gRNA_gene'::text)) OR ((cvterm.name)::text = 'miRNA_gene'::text)) OR ((cvterm.name)::text = 'scRNA_gene'::text)) OR ((cvterm.name)::text = 'snoRNA_gene'::text)) OR ((cvterm.name)::text = 'snRNA_gene'::text)) OR ((cvterm.name)::text = 'SRP_RNA_gene'::text)) OR ((cvterm.name)::text = 'stRNA_gene'::text)) OR ((cvterm.name)::text = 'tmRNA_gene'::text)) OR ((cvterm.name)::text = 'tRNA_gene'::text)) OR ((cvterm.name)::text = 'rRNA_gene'::text)) OR ((cvterm.name)::text = 'piRNA_gene'::text)) OR ((cvterm.name)::text = 'RNase_P_RNA_gene'::text)) OR ((cvterm.name)::text = 'RNase_MRP_RNA_gene'::text)) OR ((cvterm.name)::text = 'lincRNA_gene'::text)) OR ((cvterm.name)::text = 'telomerase_RNA_gene'::text)) OR ((cvterm.name)::text = 'cryptogene'::text)) OR ((cvterm.name)::text = 'gene_with_start_codon_CUG'::text)) OR ((cvterm.name)::text = 'gene'::text));
  18181. --
  18182. -- Name: gene_array; Type: VIEW; Schema: so; Owner: -
  18183. --
  18184. CREATE VIEW gene_array AS
  18185. SELECT feature.feature_id AS gene_array_id,
  18186. feature.feature_id,
  18187. feature.dbxref_id,
  18188. feature.organism_id,
  18189. feature.name,
  18190. feature.uniquename,
  18191. feature.residues,
  18192. feature.seqlen,
  18193. feature.md5checksum,
  18194. feature.type_id,
  18195. feature.is_analysis,
  18196. feature.is_obsolete,
  18197. feature.timeaccessioned,
  18198. feature.timelastmodified
  18199. FROM (feature
  18200. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18201. WHERE ((cvterm.name)::text = 'gene_array'::text);
  18202. --
  18203. -- Name: gene_array_member; Type: VIEW; Schema: so; Owner: -
  18204. --
  18205. CREATE VIEW gene_array_member AS
  18206. SELECT feature.feature_id AS gene_array_member_id,
  18207. feature.feature_id,
  18208. feature.dbxref_id,
  18209. feature.organism_id,
  18210. feature.name,
  18211. feature.uniquename,
  18212. feature.residues,
  18213. feature.seqlen,
  18214. feature.md5checksum,
  18215. feature.type_id,
  18216. feature.is_analysis,
  18217. feature.is_obsolete,
  18218. feature.timeaccessioned,
  18219. feature.timelastmodified
  18220. FROM (feature
  18221. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18222. WHERE (((((((cvterm.name)::text = 'operon_member'::text) OR ((cvterm.name)::text = 'gene_cassette_member'::text)) OR ((cvterm.name)::text = 'gene_subarray_member'::text)) OR ((cvterm.name)::text = 'member_of_regulon'::text)) OR ((cvterm.name)::text = 'cassette_array_member'::text)) OR ((cvterm.name)::text = 'gene_array_member'::text));
  18223. --
  18224. -- Name: gene_attribute; Type: VIEW; Schema: so; Owner: -
  18225. --
  18226. CREATE VIEW gene_attribute AS
  18227. SELECT feature.feature_id AS gene_attribute_id,
  18228. feature.feature_id,
  18229. feature.dbxref_id,
  18230. feature.organism_id,
  18231. feature.name,
  18232. feature.uniquename,
  18233. feature.residues,
  18234. feature.seqlen,
  18235. feature.md5checksum,
  18236. feature.type_id,
  18237. feature.is_analysis,
  18238. feature.is_obsolete,
  18239. feature.timeaccessioned,
  18240. feature.timelastmodified
  18241. FROM (feature
  18242. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18243. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'protein_coding'::text) OR ((cvterm.name)::text = 'non_protein_coding'::text)) OR ((cvterm.name)::text = 'gene_to_gene_feature'::text)) OR ((cvterm.name)::text = 'gene_array_member'::text)) OR ((cvterm.name)::text = 'regulated'::text)) OR ((cvterm.name)::text = 'epigenetically_modified'::text)) OR ((cvterm.name)::text = 'encodes_alternately_spliced_transcripts'::text)) OR ((cvterm.name)::text = 'encodes_alternate_transcription_start_sites'::text)) OR ((cvterm.name)::text = 'intein_containing'::text)) OR ((cvterm.name)::text = 'miRNA_encoding'::text)) OR ((cvterm.name)::text = 'rRNA_encoding'::text)) OR ((cvterm.name)::text = 'scRNA_encoding'::text)) OR ((cvterm.name)::text = 'snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'snRNA_encoding'::text)) OR ((cvterm.name)::text = 'SRP_RNA_encoding'::text)) OR ((cvterm.name)::text = 'stRNA_encoding'::text)) OR ((cvterm.name)::text = 'tmRNA_encoding'::text)) OR ((cvterm.name)::text = 'tRNA_encoding'::text)) OR ((cvterm.name)::text = 'gRNA_encoding'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'overlapping'::text)) OR ((cvterm.name)::text = 'inside_intron'::text)) OR ((cvterm.name)::text = 'five_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'five_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'antisense'::text)) OR ((cvterm.name)::text = 'inside_intron_antiparallel'::text)) OR ((cvterm.name)::text = 'inside_intron_parallel'::text)) OR ((cvterm.name)::text = 'operon_member'::text)) OR ((cvterm.name)::text = 'gene_cassette_member'::text)) OR ((cvterm.name)::text = 'gene_subarray_member'::text)) OR ((cvterm.name)::text = 'member_of_regulon'::text)) OR ((cvterm.name)::text = 'cassette_array_member'::text)) OR ((cvterm.name)::text = 'transcriptionally_regulated'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated'::text)) OR ((cvterm.name)::text = 'translationally_regulated'::text)) OR ((cvterm.name)::text = 'imprinted'::text)) OR ((cvterm.name)::text = 'transcriptionally_constitutive'::text)) OR ((cvterm.name)::text = 'transcriptionally_induced'::text)) OR ((cvterm.name)::text = 'transcriptionally_repressed'::text)) OR ((cvterm.name)::text = 'autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'silenced'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_stability'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_modification'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'imprinted'::text)) OR ((cvterm.name)::text = 'allelically_excluded'::text)) OR ((cvterm.name)::text = 'rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'encodes_1_polypeptide'::text)) OR ((cvterm.name)::text = 'encodes_greater_than_1_polypeptide'::text)) OR ((cvterm.name)::text = 'encodes_disjoint_polypeptides'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides'::text)) OR ((cvterm.name)::text = 'encodes_different_polypeptides_different_stop'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides_different_start'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_polypeptides_different_start_and_stop'::text)) OR ((cvterm.name)::text = 'gene_attribute'::text));
  18244. --
  18245. -- Name: gene_cassette; Type: VIEW; Schema: so; Owner: -
  18246. --
  18247. CREATE VIEW gene_cassette AS
  18248. SELECT feature.feature_id AS gene_cassette_id,
  18249. feature.feature_id,
  18250. feature.dbxref_id,
  18251. feature.organism_id,
  18252. feature.name,
  18253. feature.uniquename,
  18254. feature.residues,
  18255. feature.seqlen,
  18256. feature.md5checksum,
  18257. feature.type_id,
  18258. feature.is_analysis,
  18259. feature.is_obsolete,
  18260. feature.timeaccessioned,
  18261. feature.timelastmodified
  18262. FROM (feature
  18263. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18264. WHERE ((cvterm.name)::text = 'gene_cassette'::text);
  18265. --
  18266. -- Name: gene_cassette_array; Type: VIEW; Schema: so; Owner: -
  18267. --
  18268. CREATE VIEW gene_cassette_array AS
  18269. SELECT feature.feature_id AS gene_cassette_array_id,
  18270. feature.feature_id,
  18271. feature.dbxref_id,
  18272. feature.organism_id,
  18273. feature.name,
  18274. feature.uniquename,
  18275. feature.residues,
  18276. feature.seqlen,
  18277. feature.md5checksum,
  18278. feature.type_id,
  18279. feature.is_analysis,
  18280. feature.is_obsolete,
  18281. feature.timeaccessioned,
  18282. feature.timelastmodified
  18283. FROM (feature
  18284. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18285. WHERE ((cvterm.name)::text = 'gene_cassette_array'::text);
  18286. --
  18287. -- Name: gene_cassette_member; Type: VIEW; Schema: so; Owner: -
  18288. --
  18289. CREATE VIEW gene_cassette_member AS
  18290. SELECT feature.feature_id AS gene_cassette_member_id,
  18291. feature.feature_id,
  18292. feature.dbxref_id,
  18293. feature.organism_id,
  18294. feature.name,
  18295. feature.uniquename,
  18296. feature.residues,
  18297. feature.seqlen,
  18298. feature.md5checksum,
  18299. feature.type_id,
  18300. feature.is_analysis,
  18301. feature.is_obsolete,
  18302. feature.timeaccessioned,
  18303. feature.timelastmodified
  18304. FROM (feature
  18305. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18306. WHERE (((cvterm.name)::text = 'cassette_array_member'::text) OR ((cvterm.name)::text = 'gene_cassette_member'::text));
  18307. --
  18308. -- Name: gene_component_region; Type: VIEW; Schema: so; Owner: -
  18309. --
  18310. CREATE VIEW gene_component_region AS
  18311. SELECT feature.feature_id AS gene_component_region_id,
  18312. feature.feature_id,
  18313. feature.dbxref_id,
  18314. feature.organism_id,
  18315. feature.name,
  18316. feature.uniquename,
  18317. feature.residues,
  18318. feature.seqlen,
  18319. feature.md5checksum,
  18320. feature.type_id,
  18321. feature.is_analysis,
  18322. feature.is_obsolete,
  18323. feature.timeaccessioned,
  18324. feature.timelastmodified
  18325. FROM (feature
  18326. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18327. WHERE (((((((cvterm.name)::text = 'non_transcribed_region'::text) OR ((cvterm.name)::text = 'gene_fragment'::text)) OR ((cvterm.name)::text = 'TSS_region'::text)) OR ((cvterm.name)::text = 'gene_segment'::text)) OR ((cvterm.name)::text = 'pseudogenic_gene_segment'::text)) OR ((cvterm.name)::text = 'gene_component_region'::text));
  18328. --
  18329. -- Name: gene_fragment; Type: VIEW; Schema: so; Owner: -
  18330. --
  18331. CREATE VIEW gene_fragment AS
  18332. SELECT feature.feature_id AS gene_fragment_id,
  18333. feature.feature_id,
  18334. feature.dbxref_id,
  18335. feature.organism_id,
  18336. feature.name,
  18337. feature.uniquename,
  18338. feature.residues,
  18339. feature.seqlen,
  18340. feature.md5checksum,
  18341. feature.type_id,
  18342. feature.is_analysis,
  18343. feature.is_obsolete,
  18344. feature.timeaccessioned,
  18345. feature.timelastmodified
  18346. FROM (feature
  18347. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18348. WHERE ((cvterm.name)::text = 'gene_fragment'::text);
  18349. --
  18350. -- Name: gene_fusion; Type: VIEW; Schema: so; Owner: -
  18351. --
  18352. CREATE VIEW gene_fusion AS
  18353. SELECT feature.feature_id AS gene_fusion_id,
  18354. feature.feature_id,
  18355. feature.dbxref_id,
  18356. feature.organism_id,
  18357. feature.name,
  18358. feature.uniquename,
  18359. feature.residues,
  18360. feature.seqlen,
  18361. feature.md5checksum,
  18362. feature.type_id,
  18363. feature.is_analysis,
  18364. feature.is_obsolete,
  18365. feature.timeaccessioned,
  18366. feature.timelastmodified
  18367. FROM (feature
  18368. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18369. WHERE ((cvterm.name)::text = 'gene_fusion'::text);
  18370. --
  18371. -- Name: gene_group; Type: VIEW; Schema: so; Owner: -
  18372. --
  18373. CREATE VIEW gene_group AS
  18374. SELECT feature.feature_id AS gene_group_id,
  18375. feature.feature_id,
  18376. feature.dbxref_id,
  18377. feature.organism_id,
  18378. feature.name,
  18379. feature.uniquename,
  18380. feature.residues,
  18381. feature.seqlen,
  18382. feature.md5checksum,
  18383. feature.type_id,
  18384. feature.is_analysis,
  18385. feature.is_obsolete,
  18386. feature.timeaccessioned,
  18387. feature.timelastmodified
  18388. FROM (feature
  18389. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18390. WHERE ((((((((cvterm.name)::text = 'operon'::text) OR ((cvterm.name)::text = 'mating_type_region'::text)) OR ((cvterm.name)::text = 'gene_array'::text)) OR ((cvterm.name)::text = 'gene_subarray'::text)) OR ((cvterm.name)::text = 'gene_cassette_array'::text)) OR ((cvterm.name)::text = 'regulon'::text)) OR ((cvterm.name)::text = 'gene_group'::text));
  18391. --
  18392. -- Name: gene_group_regulatory_region; Type: VIEW; Schema: so; Owner: -
  18393. --
  18394. CREATE VIEW gene_group_regulatory_region AS
  18395. SELECT feature.feature_id AS gene_group_regulatory_region_id,
  18396. feature.feature_id,
  18397. feature.dbxref_id,
  18398. feature.organism_id,
  18399. feature.name,
  18400. feature.uniquename,
  18401. feature.residues,
  18402. feature.seqlen,
  18403. feature.md5checksum,
  18404. feature.type_id,
  18405. feature.is_analysis,
  18406. feature.is_obsolete,
  18407. feature.timeaccessioned,
  18408. feature.timelastmodified
  18409. FROM (feature
  18410. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18411. WHERE (((((((((cvterm.name)::text = 'operator'::text) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'gene_group_regulatory_region'::text));
  18412. --
  18413. -- Name: gene_member_region; Type: VIEW; Schema: so; Owner: -
  18414. --
  18415. CREATE VIEW gene_member_region AS
  18416. SELECT feature.feature_id AS gene_member_region_id,
  18417. feature.feature_id,
  18418. feature.dbxref_id,
  18419. feature.organism_id,
  18420. feature.name,
  18421. feature.uniquename,
  18422. feature.residues,
  18423. feature.seqlen,
  18424. feature.md5checksum,
  18425. feature.type_id,
  18426. feature.is_analysis,
  18427. feature.is_obsolete,
  18428. feature.timeaccessioned,
  18429. feature.timelastmodified
  18430. FROM (feature
  18431. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18432. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'transcript'::text) OR ((cvterm.name)::text = 'regulatory_region'::text)) OR ((cvterm.name)::text = 'polycistronic_transcript'::text)) OR ((cvterm.name)::text = 'transcript_with_translational_frameshift'::text)) OR ((cvterm.name)::text = 'primary_transcript'::text)) OR ((cvterm.name)::text = 'mature_transcript'::text)) OR ((cvterm.name)::text = 'transcript_bound_by_nucleic_acid'::text)) OR ((cvterm.name)::text = 'transcript_bound_by_protein'::text)) OR ((cvterm.name)::text = 'enzymatic_RNA'::text)) OR ((cvterm.name)::text = 'trans_spliced_transcript'::text)) OR ((cvterm.name)::text = 'monocistronic_transcript'::text)) OR ((cvterm.name)::text = 'aberrant_processed_transcript'::text)) OR ((cvterm.name)::text = 'edited_transcript'::text)) OR ((cvterm.name)::text = 'processed_transcript'::text)) OR ((cvterm.name)::text = 'alternatively_spliced_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'protein_coding_primary_transcript'::text)) OR ((cvterm.name)::text = 'nc_primary_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'monocistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'mini_exon_donor_RNA'::text)) OR ((cvterm.name)::text = 'antisense_primary_transcript'::text)) OR ((cvterm.name)::text = 'capped_primary_transcript'::text)) OR ((cvterm.name)::text = 'pre_edited_mRNA'::text)) OR ((cvterm.name)::text = 'scRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tmRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'SRP_RNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'miRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tasiRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_small_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_large_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'alanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'arginine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'asparagine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'aspartic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'cysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glycine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'histidine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'isoleucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'leucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'lysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methionine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'phenylalanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'proline_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'serine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'threonine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tryptophan_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tyrosine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'valine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'pyrrolysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'selenocysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'U14_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'stRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'mRNA'::text)) OR ((cvterm.name)::text = 'ncRNA'::text)) OR ((cvterm.name)::text = 'mRNA_with_frameshift'::text)) OR ((cvterm.name)::text = 'monocistronic_mRNA'::text)) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'exemplar_mRNA'::text)) OR ((cvterm.name)::text = 'capped_mRNA'::text)) OR ((cvterm.name)::text = 'polyadenylated_mRNA'::text)) OR ((cvterm.name)::text = 'trans_spliced_mRNA'::text)) OR ((cvterm.name)::text = 'edited_mRNA'::text)) OR ((cvterm.name)::text = 'consensus_mRNA'::text)) OR ((cvterm.name)::text = 'recoded_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_2_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_codon_redefinition'::text)) OR ((cvterm.name)::text = 'scRNA'::text)) OR ((cvterm.name)::text = 'rRNA'::text)) OR ((cvterm.name)::text = 'tRNA'::text)) OR ((cvterm.name)::text = 'snRNA'::text)) OR ((cvterm.name)::text = 'snoRNA'::text)) OR ((cvterm.name)::text = 'small_regulatory_ncRNA'::text)) OR ((cvterm.name)::text = 'RNase_MRP_RNA'::text)) OR ((cvterm.name)::text = 'RNase_P_RNA'::text)) OR ((cvterm.name)::text = 'telomerase_RNA'::text)) OR ((cvterm.name)::text = 'vault_RNA'::text)) OR ((cvterm.name)::text = 'Y_RNA'::text)) OR ((cvterm.name)::text = 'rasiRNA'::text)) OR ((cvterm.name)::text = 'SRP_RNA'::text)) OR ((cvterm.name)::text = 'guide_RNA'::text)) OR ((cvterm.name)::text = 'antisense_RNA'::text)) OR ((cvterm.name)::text = 'siRNA'::text)) OR ((cvterm.name)::text = 'stRNA'::text)) OR ((cvterm.name)::text = 'class_II_RNA'::text)) OR ((cvterm.name)::text = 'class_I_RNA'::text)) OR ((cvterm.name)::text = 'piRNA'::text)) OR ((cvterm.name)::text = 'lincRNA'::text)) OR ((cvterm.name)::text = 'tasiRNA'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_RNA'::text)) OR ((cvterm.name)::text = 'small_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'large_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'rRNA_18S'::text)) OR ((cvterm.name)::text = 'rRNA_16S'::text)) OR ((cvterm.name)::text = 'rRNA_5_8S'::text)) OR ((cvterm.name)::text = 'rRNA_5S'::text)) OR ((cvterm.name)::text = 'rRNA_28S'::text)) OR ((cvterm.name)::text = 'rRNA_23S'::text)) OR ((cvterm.name)::text = 'rRNA_25S'::text)) OR ((cvterm.name)::text = 'rRNA_21S'::text)) OR ((cvterm.name)::text = 'alanyl_tRNA'::text)) OR ((cvterm.name)::text = 'asparaginyl_tRNA'::text)) OR ((cvterm.name)::text = 'aspartyl_tRNA'::text)) OR ((cvterm.name)::text = 'cysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutaminyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutamyl_tRNA'::text)) OR ((cvterm.name)::text = 'glycyl_tRNA'::text)) OR ((cvterm.name)::text = 'histidyl_tRNA'::text)) OR ((cvterm.name)::text = 'isoleucyl_tRNA'::text)) OR ((cvterm.name)::text = 'leucyl_tRNA'::text)) OR ((cvterm.name)::text = 'lysyl_tRNA'::text)) OR ((cvterm.name)::text = 'methionyl_tRNA'::text)) OR ((cvterm.name)::text = 'phenylalanyl_tRNA'::text)) OR ((cvterm.name)::text = 'prolyl_tRNA'::text)) OR ((cvterm.name)::text = 'seryl_tRNA'::text)) OR ((cvterm.name)::text = 'threonyl_tRNA'::text)) OR ((cvterm.name)::text = 'tryptophanyl_tRNA'::text)) OR ((cvterm.name)::text = 'tyrosyl_tRNA'::text)) OR ((cvterm.name)::text = 'valyl_tRNA'::text)) OR ((cvterm.name)::text = 'pyrrolysyl_tRNA'::text)) OR ((cvterm.name)::text = 'arginyl_tRNA'::text)) OR ((cvterm.name)::text = 'selenocysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'U1_snRNA'::text)) OR ((cvterm.name)::text = 'U2_snRNA'::text)) OR ((cvterm.name)::text = 'U4_snRNA'::text)) OR ((cvterm.name)::text = 'U4atac_snRNA'::text)) OR ((cvterm.name)::text = 'U5_snRNA'::text)) OR ((cvterm.name)::text = 'U6_snRNA'::text)) OR ((cvterm.name)::text = 'U6atac_snRNA'::text)) OR ((cvterm.name)::text = 'U11_snRNA'::text)) OR ((cvterm.name)::text = 'U12_snRNA'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA'::text)) OR ((cvterm.name)::text = 'U14_snoRNA'::text)) OR ((cvterm.name)::text = 'U3_snoRNA'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'pseudouridylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'miRNA'::text)) OR ((cvterm.name)::text = 'RNA_6S'::text)) OR ((cvterm.name)::text = 'CsrB_RsmB_RNA'::text)) OR ((cvterm.name)::text = 'DsrA_RNA'::text)) OR ((cvterm.name)::text = 'OxyS_RNA'::text)) OR ((cvterm.name)::text = 'RprA_RNA'::text)) OR ((cvterm.name)::text = 'RRE_RNA'::text)) OR ((cvterm.name)::text = 'spot_42_RNA'::text)) OR ((cvterm.name)::text = 'tmRNA'::text)) OR ((cvterm.name)::text = 'GcvB_RNA'::text)) OR ((cvterm.name)::text = 'MicF_RNA'::text)) OR ((cvterm.name)::text = 'ribozyme'::text)) OR ((cvterm.name)::text = 'trans_spliced_mRNA'::text)) OR ((cvterm.name)::text = 'monocistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'monocistronic_mRNA'::text)) OR ((cvterm.name)::text = 'edited_transcript_by_A_to_I_substitution'::text)) OR ((cvterm.name)::text = 'edited_mRNA'::text)) OR ((cvterm.name)::text = 'transcription_regulatory_region'::text)) OR ((cvterm.name)::text = 'translation_regulatory_region'::text)) OR ((cvterm.name)::text = 'recombination_regulatory_region'::text)) OR ((cvterm.name)::text = 'replication_regulatory_region'::text)) OR ((cvterm.name)::text = 'terminator'::text)) OR ((cvterm.name)::text = 'TF_binding_site'::text)) OR ((cvterm.name)::text = 'polyA_signal_sequence'::text)) OR ((cvterm.name)::text = 'gene_group_regulatory_region'::text)) OR ((cvterm.name)::text = 'transcriptional_cis_regulatory_region'::text)) OR ((cvterm.name)::text = 'splicing_regulatory_region'::text)) OR ((cvterm.name)::text = 'cis_regulatory_frameshift_element'::text)) OR ((cvterm.name)::text = 'intronic_regulatory_region'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text)) OR ((cvterm.name)::text = 'eukaryotic_terminator'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'terminator_of_type_2_RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'operator'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'promoter'::text)) OR ((cvterm.name)::text = 'insulator'::text)) OR ((cvterm.name)::text = 'CRM'::text)) OR ((cvterm.name)::text = 'promoter_targeting_sequence'::text)) OR ((cvterm.name)::text = 'ISRE'::text)) OR ((cvterm.name)::text = 'bidirectional_promoter'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_I_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'Phage_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_core_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'locus_control_region'::text)) OR ((cvterm.name)::text = 'enhancer'::text)) OR ((cvterm.name)::text = 'silencer'::text)) OR ((cvterm.name)::text = 'enhancer_bound_by_factor'::text)) OR ((cvterm.name)::text = 'shadow_enhancer'::text)) OR ((cvterm.name)::text = 'splice_enhancer'::text)) OR ((cvterm.name)::text = 'intronic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'exonic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'attenuator'::text)) OR ((cvterm.name)::text = 'gene_member_region'::text));
  18433. --
  18434. -- Name: gene_rearranged_at_dna_level; Type: VIEW; Schema: so; Owner: -
  18435. --
  18436. CREATE VIEW gene_rearranged_at_dna_level AS
  18437. SELECT feature.feature_id AS gene_rearranged_at_dna_level_id,
  18438. feature.feature_id,
  18439. feature.dbxref_id,
  18440. feature.organism_id,
  18441. feature.name,
  18442. feature.uniquename,
  18443. feature.residues,
  18444. feature.seqlen,
  18445. feature.md5checksum,
  18446. feature.type_id,
  18447. feature.is_analysis,
  18448. feature.is_obsolete,
  18449. feature.timeaccessioned,
  18450. feature.timelastmodified
  18451. FROM (feature
  18452. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18453. WHERE ((cvterm.name)::text = 'gene_rearranged_at_DNA_level'::text);
  18454. --
  18455. -- Name: gene_segment; Type: VIEW; Schema: so; Owner: -
  18456. --
  18457. CREATE VIEW gene_segment AS
  18458. SELECT feature.feature_id AS gene_segment_id,
  18459. feature.feature_id,
  18460. feature.dbxref_id,
  18461. feature.organism_id,
  18462. feature.name,
  18463. feature.uniquename,
  18464. feature.residues,
  18465. feature.seqlen,
  18466. feature.md5checksum,
  18467. feature.type_id,
  18468. feature.is_analysis,
  18469. feature.is_obsolete,
  18470. feature.timeaccessioned,
  18471. feature.timelastmodified
  18472. FROM (feature
  18473. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18474. WHERE (((cvterm.name)::text = 'pseudogenic_gene_segment'::text) OR ((cvterm.name)::text = 'gene_segment'::text));
  18475. --
  18476. -- Name: gene_silenced_by_dna_methylation; Type: VIEW; Schema: so; Owner: -
  18477. --
  18478. CREATE VIEW gene_silenced_by_dna_methylation AS
  18479. SELECT feature.feature_id AS gene_silenced_by_dna_methylation_id,
  18480. feature.feature_id,
  18481. feature.dbxref_id,
  18482. feature.organism_id,
  18483. feature.name,
  18484. feature.uniquename,
  18485. feature.residues,
  18486. feature.seqlen,
  18487. feature.md5checksum,
  18488. feature.type_id,
  18489. feature.is_analysis,
  18490. feature.is_obsolete,
  18491. feature.timeaccessioned,
  18492. feature.timelastmodified
  18493. FROM (feature
  18494. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18495. WHERE ((cvterm.name)::text = 'gene_silenced_by_DNA_methylation'::text);
  18496. --
  18497. -- Name: gene_silenced_by_dna_modification; Type: VIEW; Schema: so; Owner: -
  18498. --
  18499. CREATE VIEW gene_silenced_by_dna_modification AS
  18500. SELECT feature.feature_id AS gene_silenced_by_dna_modification_id,
  18501. feature.feature_id,
  18502. feature.dbxref_id,
  18503. feature.organism_id,
  18504. feature.name,
  18505. feature.uniquename,
  18506. feature.residues,
  18507. feature.seqlen,
  18508. feature.md5checksum,
  18509. feature.type_id,
  18510. feature.is_analysis,
  18511. feature.is_obsolete,
  18512. feature.timeaccessioned,
  18513. feature.timelastmodified
  18514. FROM (feature
  18515. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18516. WHERE (((cvterm.name)::text = 'gene_silenced_by_DNA_methylation'::text) OR ((cvterm.name)::text = 'gene_silenced_by_DNA_modification'::text));
  18517. --
  18518. -- Name: gene_silenced_by_histone_deacetylation; Type: VIEW; Schema: so; Owner: -
  18519. --
  18520. CREATE VIEW gene_silenced_by_histone_deacetylation AS
  18521. SELECT feature.feature_id AS gene_silenced_by_histone_deacetylation_id,
  18522. feature.feature_id,
  18523. feature.dbxref_id,
  18524. feature.organism_id,
  18525. feature.name,
  18526. feature.uniquename,
  18527. feature.residues,
  18528. feature.seqlen,
  18529. feature.md5checksum,
  18530. feature.type_id,
  18531. feature.is_analysis,
  18532. feature.is_obsolete,
  18533. feature.timeaccessioned,
  18534. feature.timelastmodified
  18535. FROM (feature
  18536. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18537. WHERE ((cvterm.name)::text = 'gene_silenced_by_histone_deacetylation'::text);
  18538. --
  18539. -- Name: gene_silenced_by_histone_methylation; Type: VIEW; Schema: so; Owner: -
  18540. --
  18541. CREATE VIEW gene_silenced_by_histone_methylation AS
  18542. SELECT feature.feature_id AS gene_silenced_by_histone_methylation_id,
  18543. feature.feature_id,
  18544. feature.dbxref_id,
  18545. feature.organism_id,
  18546. feature.name,
  18547. feature.uniquename,
  18548. feature.residues,
  18549. feature.seqlen,
  18550. feature.md5checksum,
  18551. feature.type_id,
  18552. feature.is_analysis,
  18553. feature.is_obsolete,
  18554. feature.timeaccessioned,
  18555. feature.timelastmodified
  18556. FROM (feature
  18557. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18558. WHERE ((cvterm.name)::text = 'gene_silenced_by_histone_methylation'::text);
  18559. --
  18560. -- Name: gene_silenced_by_histone_modification; Type: VIEW; Schema: so; Owner: -
  18561. --
  18562. CREATE VIEW gene_silenced_by_histone_modification AS
  18563. SELECT feature.feature_id AS gene_silenced_by_histone_modification_id,
  18564. feature.feature_id,
  18565. feature.dbxref_id,
  18566. feature.organism_id,
  18567. feature.name,
  18568. feature.uniquename,
  18569. feature.residues,
  18570. feature.seqlen,
  18571. feature.md5checksum,
  18572. feature.type_id,
  18573. feature.is_analysis,
  18574. feature.is_obsolete,
  18575. feature.timeaccessioned,
  18576. feature.timelastmodified
  18577. FROM (feature
  18578. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18579. WHERE ((((cvterm.name)::text = 'gene_silenced_by_histone_methylation'::text) OR ((cvterm.name)::text = 'gene_silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_histone_modification'::text));
  18580. --
  18581. -- Name: gene_silenced_by_rna_interference; Type: VIEW; Schema: so; Owner: -
  18582. --
  18583. CREATE VIEW gene_silenced_by_rna_interference AS
  18584. SELECT feature.feature_id AS gene_silenced_by_rna_interference_id,
  18585. feature.feature_id,
  18586. feature.dbxref_id,
  18587. feature.organism_id,
  18588. feature.name,
  18589. feature.uniquename,
  18590. feature.residues,
  18591. feature.seqlen,
  18592. feature.md5checksum,
  18593. feature.type_id,
  18594. feature.is_analysis,
  18595. feature.is_obsolete,
  18596. feature.timeaccessioned,
  18597. feature.timelastmodified
  18598. FROM (feature
  18599. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18600. WHERE ((cvterm.name)::text = 'gene_silenced_by_RNA_interference'::text);
  18601. --
  18602. -- Name: gene_subarray; Type: VIEW; Schema: so; Owner: -
  18603. --
  18604. CREATE VIEW gene_subarray AS
  18605. SELECT feature.feature_id AS gene_subarray_id,
  18606. feature.feature_id,
  18607. feature.dbxref_id,
  18608. feature.organism_id,
  18609. feature.name,
  18610. feature.uniquename,
  18611. feature.residues,
  18612. feature.seqlen,
  18613. feature.md5checksum,
  18614. feature.type_id,
  18615. feature.is_analysis,
  18616. feature.is_obsolete,
  18617. feature.timeaccessioned,
  18618. feature.timelastmodified
  18619. FROM (feature
  18620. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18621. WHERE ((cvterm.name)::text = 'gene_subarray'::text);
  18622. --
  18623. -- Name: gene_subarray_member; Type: VIEW; Schema: so; Owner: -
  18624. --
  18625. CREATE VIEW gene_subarray_member AS
  18626. SELECT feature.feature_id AS gene_subarray_member_id,
  18627. feature.feature_id,
  18628. feature.dbxref_id,
  18629. feature.organism_id,
  18630. feature.name,
  18631. feature.uniquename,
  18632. feature.residues,
  18633. feature.seqlen,
  18634. feature.md5checksum,
  18635. feature.type_id,
  18636. feature.is_analysis,
  18637. feature.is_obsolete,
  18638. feature.timeaccessioned,
  18639. feature.timelastmodified
  18640. FROM (feature
  18641. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18642. WHERE ((cvterm.name)::text = 'gene_subarray_member'::text);
  18643. --
  18644. -- Name: gene_to_gene_feature; Type: VIEW; Schema: so; Owner: -
  18645. --
  18646. CREATE VIEW gene_to_gene_feature AS
  18647. SELECT feature.feature_id AS gene_to_gene_feature_id,
  18648. feature.feature_id,
  18649. feature.dbxref_id,
  18650. feature.organism_id,
  18651. feature.name,
  18652. feature.uniquename,
  18653. feature.residues,
  18654. feature.seqlen,
  18655. feature.md5checksum,
  18656. feature.type_id,
  18657. feature.is_analysis,
  18658. feature.is_obsolete,
  18659. feature.timeaccessioned,
  18660. feature.timelastmodified
  18661. FROM (feature
  18662. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18663. WHERE (((((((((((cvterm.name)::text = 'overlapping'::text) OR ((cvterm.name)::text = 'inside_intron'::text)) OR ((cvterm.name)::text = 'five_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'five_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'antisense'::text)) OR ((cvterm.name)::text = 'inside_intron_antiparallel'::text)) OR ((cvterm.name)::text = 'inside_intron_parallel'::text)) OR ((cvterm.name)::text = 'gene_to_gene_feature'::text));
  18664. --
  18665. -- Name: gene_trap_construct; Type: VIEW; Schema: so; Owner: -
  18666. --
  18667. CREATE VIEW gene_trap_construct AS
  18668. SELECT feature.feature_id AS gene_trap_construct_id,
  18669. feature.feature_id,
  18670. feature.dbxref_id,
  18671. feature.organism_id,
  18672. feature.name,
  18673. feature.uniquename,
  18674. feature.residues,
  18675. feature.seqlen,
  18676. feature.md5checksum,
  18677. feature.type_id,
  18678. feature.is_analysis,
  18679. feature.is_obsolete,
  18680. feature.timeaccessioned,
  18681. feature.timelastmodified
  18682. FROM (feature
  18683. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18684. WHERE ((cvterm.name)::text = 'gene_trap_construct'::text);
  18685. --
  18686. -- Name: gene_variant; Type: VIEW; Schema: so; Owner: -
  18687. --
  18688. CREATE VIEW gene_variant AS
  18689. SELECT feature.feature_id AS gene_variant_id,
  18690. feature.feature_id,
  18691. feature.dbxref_id,
  18692. feature.organism_id,
  18693. feature.name,
  18694. feature.uniquename,
  18695. feature.residues,
  18696. feature.seqlen,
  18697. feature.md5checksum,
  18698. feature.type_id,
  18699. feature.is_analysis,
  18700. feature.is_obsolete,
  18701. feature.timeaccessioned,
  18702. feature.timelastmodified
  18703. FROM (feature
  18704. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18705. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'gene_fusion'::text) OR ((cvterm.name)::text = 'splicing_variant'::text)) OR ((cvterm.name)::text = 'transcript_variant'::text)) OR ((cvterm.name)::text = 'translational_product_structure_variant'::text)) OR ((cvterm.name)::text = 'cryptic_splice_site_variant'::text)) OR ((cvterm.name)::text = 'exon_loss'::text)) OR ((cvterm.name)::text = 'intron_gain'::text)) OR ((cvterm.name)::text = 'splice_region_variant'::text)) OR ((cvterm.name)::text = 'cryptic_splice_acceptor'::text)) OR ((cvterm.name)::text = 'cryptic_splice_donor'::text)) OR ((cvterm.name)::text = 'complex_change_in_transcript'::text)) OR ((cvterm.name)::text = 'transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'nc_transcript_variant'::text)) OR ((cvterm.name)::text = 'NMD_transcript_variant'::text)) OR ((cvterm.name)::text = 'UTR_variant'::text)) OR ((cvterm.name)::text = 'intron_variant'::text)) OR ((cvterm.name)::text = 'exon_variant'::text)) OR ((cvterm.name)::text = 'compensatory_transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'mature_miRNA_variant'::text)) OR ((cvterm.name)::text = '5_prime_UTR_variant'::text)) OR ((cvterm.name)::text = '3_prime_UTR_variant'::text)) OR ((cvterm.name)::text = 'splice_site_variant'::text)) OR ((cvterm.name)::text = 'splice_acceptor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_5th_base_variant'::text)) OR ((cvterm.name)::text = 'coding_sequence_variant'::text)) OR ((cvterm.name)::text = 'non_coding_exon_variant'::text)) OR ((cvterm.name)::text = 'codon_variant'::text)) OR ((cvterm.name)::text = 'frameshift_variant'::text)) OR ((cvterm.name)::text = 'inframe_variant'::text)) OR ((cvterm.name)::text = 'initiator_codon_change'::text)) OR ((cvterm.name)::text = 'non_synonymous_codon'::text)) OR ((cvterm.name)::text = 'synonymous_codon'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_gained'::text)) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text)) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'frame_restoring_variant'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_2_frameshift variant'::text)) OR ((cvterm.name)::text = 'inframe_codon_gain'::text)) OR ((cvterm.name)::text = 'inframe_codon_loss'::text)) OR ((cvterm.name)::text = '3D_polypeptide_structure_variant'::text)) OR ((cvterm.name)::text = 'complex_change_of_translational_product_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_sequence_variant'::text)) OR ((cvterm.name)::text = 'complex_3D_structural_variant'::text)) OR ((cvterm.name)::text = 'conformational_change_variant'::text)) OR ((cvterm.name)::text = 'amino_acid_deletion'::text)) OR ((cvterm.name)::text = 'amino_acid_insertion'::text)) OR ((cvterm.name)::text = 'amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide'::text)) OR ((cvterm.name)::text = 'polypeptide_fusion'::text)) OR ((cvterm.name)::text = 'polypeptide_truncation'::text)) OR ((cvterm.name)::text = 'conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'non_conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'gene_variant'::text));
  18706. --
  18707. -- Name: gene_with_dicistronic_mrna; Type: VIEW; Schema: so; Owner: -
  18708. --
  18709. CREATE VIEW gene_with_dicistronic_mrna AS
  18710. SELECT feature.feature_id AS gene_with_dicistronic_mrna_id,
  18711. feature.feature_id,
  18712. feature.dbxref_id,
  18713. feature.organism_id,
  18714. feature.name,
  18715. feature.uniquename,
  18716. feature.residues,
  18717. feature.seqlen,
  18718. feature.md5checksum,
  18719. feature.type_id,
  18720. feature.is_analysis,
  18721. feature.is_obsolete,
  18722. feature.timeaccessioned,
  18723. feature.timelastmodified
  18724. FROM (feature
  18725. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18726. WHERE ((cvterm.name)::text = 'gene_with_dicistronic_mRNA'::text);
  18727. --
  18728. -- Name: gene_with_dicistronic_primary_transcript; Type: VIEW; Schema: so; Owner: -
  18729. --
  18730. CREATE VIEW gene_with_dicistronic_primary_transcript AS
  18731. SELECT feature.feature_id AS gene_with_dicistronic_primary_transcript_id,
  18732. feature.feature_id,
  18733. feature.dbxref_id,
  18734. feature.organism_id,
  18735. feature.name,
  18736. feature.uniquename,
  18737. feature.residues,
  18738. feature.seqlen,
  18739. feature.md5checksum,
  18740. feature.type_id,
  18741. feature.is_analysis,
  18742. feature.is_obsolete,
  18743. feature.timeaccessioned,
  18744. feature.timelastmodified
  18745. FROM (feature
  18746. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18747. WHERE ((cvterm.name)::text = 'gene_with_dicistronic_primary_transcript'::text);
  18748. --
  18749. -- Name: gene_with_dicistronic_transcript; Type: VIEW; Schema: so; Owner: -
  18750. --
  18751. CREATE VIEW gene_with_dicistronic_transcript AS
  18752. SELECT feature.feature_id AS gene_with_dicistronic_transcript_id,
  18753. feature.feature_id,
  18754. feature.dbxref_id,
  18755. feature.organism_id,
  18756. feature.name,
  18757. feature.uniquename,
  18758. feature.residues,
  18759. feature.seqlen,
  18760. feature.md5checksum,
  18761. feature.type_id,
  18762. feature.is_analysis,
  18763. feature.is_obsolete,
  18764. feature.timeaccessioned,
  18765. feature.timelastmodified
  18766. FROM (feature
  18767. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18768. WHERE ((((cvterm.name)::text = 'gene_with_dicistronic_primary_transcript'::text) OR ((cvterm.name)::text = 'gene_with_dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'gene_with_dicistronic_transcript'::text));
  18769. --
  18770. -- Name: gene_with_edited_transcript; Type: VIEW; Schema: so; Owner: -
  18771. --
  18772. CREATE VIEW gene_with_edited_transcript AS
  18773. SELECT feature.feature_id AS gene_with_edited_transcript_id,
  18774. feature.feature_id,
  18775. feature.dbxref_id,
  18776. feature.organism_id,
  18777. feature.name,
  18778. feature.uniquename,
  18779. feature.residues,
  18780. feature.seqlen,
  18781. feature.md5checksum,
  18782. feature.type_id,
  18783. feature.is_analysis,
  18784. feature.is_obsolete,
  18785. feature.timeaccessioned,
  18786. feature.timelastmodified
  18787. FROM (feature
  18788. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18789. WHERE ((cvterm.name)::text = 'gene_with_edited_transcript'::text);
  18790. --
  18791. -- Name: gene_with_mrna_recoded_by_translational_bypass; Type: VIEW; Schema: so; Owner: -
  18792. --
  18793. CREATE VIEW gene_with_mrna_recoded_by_translational_bypass AS
  18794. SELECT feature.feature_id AS gene_with_mrna_recoded_by_translational_bypass_id,
  18795. feature.feature_id,
  18796. feature.dbxref_id,
  18797. feature.organism_id,
  18798. feature.name,
  18799. feature.uniquename,
  18800. feature.residues,
  18801. feature.seqlen,
  18802. feature.md5checksum,
  18803. feature.type_id,
  18804. feature.is_analysis,
  18805. feature.is_obsolete,
  18806. feature.timeaccessioned,
  18807. feature.timelastmodified
  18808. FROM (feature
  18809. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18810. WHERE ((cvterm.name)::text = 'gene_with_mRNA_recoded_by_translational_bypass'::text);
  18811. --
  18812. -- Name: gene_with_mrna_with_frameshift; Type: VIEW; Schema: so; Owner: -
  18813. --
  18814. CREATE VIEW gene_with_mrna_with_frameshift AS
  18815. SELECT feature.feature_id AS gene_with_mrna_with_frameshift_id,
  18816. feature.feature_id,
  18817. feature.dbxref_id,
  18818. feature.organism_id,
  18819. feature.name,
  18820. feature.uniquename,
  18821. feature.residues,
  18822. feature.seqlen,
  18823. feature.md5checksum,
  18824. feature.type_id,
  18825. feature.is_analysis,
  18826. feature.is_obsolete,
  18827. feature.timeaccessioned,
  18828. feature.timelastmodified
  18829. FROM (feature
  18830. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18831. WHERE ((cvterm.name)::text = 'gene_with_mRNA_with_frameshift'::text);
  18832. --
  18833. -- Name: gene_with_non_canonical_start_codon; Type: VIEW; Schema: so; Owner: -
  18834. --
  18835. CREATE VIEW gene_with_non_canonical_start_codon AS
  18836. SELECT feature.feature_id AS gene_with_non_canonical_start_codon_id,
  18837. feature.feature_id,
  18838. feature.dbxref_id,
  18839. feature.organism_id,
  18840. feature.name,
  18841. feature.uniquename,
  18842. feature.residues,
  18843. feature.seqlen,
  18844. feature.md5checksum,
  18845. feature.type_id,
  18846. feature.is_analysis,
  18847. feature.is_obsolete,
  18848. feature.timeaccessioned,
  18849. feature.timelastmodified
  18850. FROM (feature
  18851. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18852. WHERE (((cvterm.name)::text = 'gene_with_start_codon_CUG'::text) OR ((cvterm.name)::text = 'gene_with_non_canonical_start_codon'::text));
  18853. --
  18854. -- Name: gene_with_polyadenylated_mrna; Type: VIEW; Schema: so; Owner: -
  18855. --
  18856. CREATE VIEW gene_with_polyadenylated_mrna AS
  18857. SELECT feature.feature_id AS gene_with_polyadenylated_mrna_id,
  18858. feature.feature_id,
  18859. feature.dbxref_id,
  18860. feature.organism_id,
  18861. feature.name,
  18862. feature.uniquename,
  18863. feature.residues,
  18864. feature.seqlen,
  18865. feature.md5checksum,
  18866. feature.type_id,
  18867. feature.is_analysis,
  18868. feature.is_obsolete,
  18869. feature.timeaccessioned,
  18870. feature.timelastmodified
  18871. FROM (feature
  18872. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18873. WHERE ((cvterm.name)::text = 'gene_with_polyadenylated_mRNA'::text);
  18874. --
  18875. -- Name: gene_with_polycistronic_transcript; Type: VIEW; Schema: so; Owner: -
  18876. --
  18877. CREATE VIEW gene_with_polycistronic_transcript AS
  18878. SELECT feature.feature_id AS gene_with_polycistronic_transcript_id,
  18879. feature.feature_id,
  18880. feature.dbxref_id,
  18881. feature.organism_id,
  18882. feature.name,
  18883. feature.uniquename,
  18884. feature.residues,
  18885. feature.seqlen,
  18886. feature.md5checksum,
  18887. feature.type_id,
  18888. feature.is_analysis,
  18889. feature.is_obsolete,
  18890. feature.timeaccessioned,
  18891. feature.timelastmodified
  18892. FROM (feature
  18893. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18894. WHERE (((((cvterm.name)::text = 'gene_with_dicistronic_transcript'::text) OR ((cvterm.name)::text = 'gene_with_dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'gene_with_dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'gene_with_polycistronic_transcript'::text));
  18895. --
  18896. -- Name: gene_with_recoded_mrna; Type: VIEW; Schema: so; Owner: -
  18897. --
  18898. CREATE VIEW gene_with_recoded_mrna AS
  18899. SELECT feature.feature_id AS gene_with_recoded_mrna_id,
  18900. feature.feature_id,
  18901. feature.dbxref_id,
  18902. feature.organism_id,
  18903. feature.name,
  18904. feature.uniquename,
  18905. feature.residues,
  18906. feature.seqlen,
  18907. feature.md5checksum,
  18908. feature.type_id,
  18909. feature.is_analysis,
  18910. feature.is_obsolete,
  18911. feature.timeaccessioned,
  18912. feature.timelastmodified
  18913. FROM (feature
  18914. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18915. WHERE (((((((cvterm.name)::text = 'gene_with_stop_codon_read_through'::text) OR ((cvterm.name)::text = 'gene_with_mRNA_recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'gene_with_transcript_with_translational_frameshift'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'gene_with_recoded_mRNA'::text));
  18916. --
  18917. -- Name: gene_with_start_codon_cug; Type: VIEW; Schema: so; Owner: -
  18918. --
  18919. CREATE VIEW gene_with_start_codon_cug AS
  18920. SELECT feature.feature_id AS gene_with_start_codon_cug_id,
  18921. feature.feature_id,
  18922. feature.dbxref_id,
  18923. feature.organism_id,
  18924. feature.name,
  18925. feature.uniquename,
  18926. feature.residues,
  18927. feature.seqlen,
  18928. feature.md5checksum,
  18929. feature.type_id,
  18930. feature.is_analysis,
  18931. feature.is_obsolete,
  18932. feature.timeaccessioned,
  18933. feature.timelastmodified
  18934. FROM (feature
  18935. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18936. WHERE ((cvterm.name)::text = 'gene_with_start_codon_CUG'::text);
  18937. --
  18938. -- Name: gene_with_stop_codon_read_through; Type: VIEW; Schema: so; Owner: -
  18939. --
  18940. CREATE VIEW gene_with_stop_codon_read_through AS
  18941. SELECT feature.feature_id AS gene_with_stop_codon_read_through_id,
  18942. feature.feature_id,
  18943. feature.dbxref_id,
  18944. feature.organism_id,
  18945. feature.name,
  18946. feature.uniquename,
  18947. feature.residues,
  18948. feature.seqlen,
  18949. feature.md5checksum,
  18950. feature.type_id,
  18951. feature.is_analysis,
  18952. feature.is_obsolete,
  18953. feature.timeaccessioned,
  18954. feature.timelastmodified
  18955. FROM (feature
  18956. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18957. WHERE ((((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_pyrrolysine'::text) OR ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_read_through'::text));
  18958. --
  18959. -- Name: gene_with_stop_codon_redefined_as_pyrrolysine; Type: VIEW; Schema: so; Owner: -
  18960. --
  18961. CREATE VIEW gene_with_stop_codon_redefined_as_pyrrolysine AS
  18962. SELECT feature.feature_id AS gene_with_stop_codon_redefined_as_pyrrolysine_id,
  18963. feature.feature_id,
  18964. feature.dbxref_id,
  18965. feature.organism_id,
  18966. feature.name,
  18967. feature.uniquename,
  18968. feature.residues,
  18969. feature.seqlen,
  18970. feature.md5checksum,
  18971. feature.type_id,
  18972. feature.is_analysis,
  18973. feature.is_obsolete,
  18974. feature.timeaccessioned,
  18975. feature.timelastmodified
  18976. FROM (feature
  18977. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18978. WHERE ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_pyrrolysine'::text);
  18979. --
  18980. -- Name: gene_with_stop_codon_redefined_as_selenocysteine; Type: VIEW; Schema: so; Owner: -
  18981. --
  18982. CREATE VIEW gene_with_stop_codon_redefined_as_selenocysteine AS
  18983. SELECT feature.feature_id AS gene_with_stop_codon_redefined_as_selenocysteine_id,
  18984. feature.feature_id,
  18985. feature.dbxref_id,
  18986. feature.organism_id,
  18987. feature.name,
  18988. feature.uniquename,
  18989. feature.residues,
  18990. feature.seqlen,
  18991. feature.md5checksum,
  18992. feature.type_id,
  18993. feature.is_analysis,
  18994. feature.is_obsolete,
  18995. feature.timeaccessioned,
  18996. feature.timelastmodified
  18997. FROM (feature
  18998. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  18999. WHERE ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_selenocysteine'::text);
  19000. --
  19001. -- Name: gene_with_trans_spliced_transcript; Type: VIEW; Schema: so; Owner: -
  19002. --
  19003. CREATE VIEW gene_with_trans_spliced_transcript AS
  19004. SELECT feature.feature_id AS gene_with_trans_spliced_transcript_id,
  19005. feature.feature_id,
  19006. feature.dbxref_id,
  19007. feature.organism_id,
  19008. feature.name,
  19009. feature.uniquename,
  19010. feature.residues,
  19011. feature.seqlen,
  19012. feature.md5checksum,
  19013. feature.type_id,
  19014. feature.is_analysis,
  19015. feature.is_obsolete,
  19016. feature.timeaccessioned,
  19017. feature.timelastmodified
  19018. FROM (feature
  19019. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19020. WHERE ((cvterm.name)::text = 'gene_with_trans_spliced_transcript'::text);
  19021. --
  19022. -- Name: gene_with_transcript_with_translational_frameshift; Type: VIEW; Schema: so; Owner: -
  19023. --
  19024. CREATE VIEW gene_with_transcript_with_translational_frameshift AS
  19025. SELECT feature.feature_id AS gene_with_transcript_with_translational_frameshift_id,
  19026. feature.feature_id,
  19027. feature.dbxref_id,
  19028. feature.organism_id,
  19029. feature.name,
  19030. feature.uniquename,
  19031. feature.residues,
  19032. feature.seqlen,
  19033. feature.md5checksum,
  19034. feature.type_id,
  19035. feature.is_analysis,
  19036. feature.is_obsolete,
  19037. feature.timeaccessioned,
  19038. feature.timelastmodified
  19039. FROM (feature
  19040. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19041. WHERE ((cvterm.name)::text = 'gene_with_transcript_with_translational_frameshift'::text);
  19042. --
  19043. -- Name: genetic_marker; Type: VIEW; Schema: so; Owner: -
  19044. --
  19045. CREATE VIEW genetic_marker AS
  19046. SELECT feature.feature_id AS genetic_marker_id,
  19047. feature.feature_id,
  19048. feature.dbxref_id,
  19049. feature.organism_id,
  19050. feature.name,
  19051. feature.uniquename,
  19052. feature.residues,
  19053. feature.seqlen,
  19054. feature.md5checksum,
  19055. feature.type_id,
  19056. feature.is_analysis,
  19057. feature.is_obsolete,
  19058. feature.timeaccessioned,
  19059. feature.timelastmodified
  19060. FROM (feature
  19061. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19062. WHERE ((((cvterm.name)::text = 'heritable_phenotypic_marker'::text) OR ((cvterm.name)::text = 'DArT_marker'::text)) OR ((cvterm.name)::text = 'genetic_marker'::text));
  19063. --
  19064. -- Name: genome; Type: VIEW; Schema: so; Owner: -
  19065. --
  19066. CREATE VIEW genome AS
  19067. SELECT feature.feature_id AS genome_id,
  19068. feature.feature_id,
  19069. feature.dbxref_id,
  19070. feature.organism_id,
  19071. feature.name,
  19072. feature.uniquename,
  19073. feature.residues,
  19074. feature.seqlen,
  19075. feature.md5checksum,
  19076. feature.type_id,
  19077. feature.is_analysis,
  19078. feature.is_obsolete,
  19079. feature.timeaccessioned,
  19080. feature.timelastmodified
  19081. FROM (feature
  19082. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19083. WHERE ((((((cvterm.name)::text = 'kinetoplast'::text) OR ((cvterm.name)::text = 'reference_genome'::text)) OR ((cvterm.name)::text = 'variant_genome'::text)) OR ((cvterm.name)::text = 'chromosomally_aberrant_genome'::text)) OR ((cvterm.name)::text = 'genome'::text));
  19084. --
  19085. -- Name: genomic_clone; Type: VIEW; Schema: so; Owner: -
  19086. --
  19087. CREATE VIEW genomic_clone AS
  19088. SELECT feature.feature_id AS genomic_clone_id,
  19089. feature.feature_id,
  19090. feature.dbxref_id,
  19091. feature.organism_id,
  19092. feature.name,
  19093. feature.uniquename,
  19094. feature.residues,
  19095. feature.seqlen,
  19096. feature.md5checksum,
  19097. feature.type_id,
  19098. feature.is_analysis,
  19099. feature.is_obsolete,
  19100. feature.timeaccessioned,
  19101. feature.timelastmodified
  19102. FROM (feature
  19103. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19104. WHERE ((cvterm.name)::text = 'genomic_clone'::text);
  19105. --
  19106. -- Name: genomic_dna; Type: VIEW; Schema: so; Owner: -
  19107. --
  19108. CREATE VIEW genomic_dna AS
  19109. SELECT feature.feature_id AS genomic_dna_id,
  19110. feature.feature_id,
  19111. feature.dbxref_id,
  19112. feature.organism_id,
  19113. feature.name,
  19114. feature.uniquename,
  19115. feature.residues,
  19116. feature.seqlen,
  19117. feature.md5checksum,
  19118. feature.type_id,
  19119. feature.is_analysis,
  19120. feature.is_obsolete,
  19121. feature.timeaccessioned,
  19122. feature.timelastmodified
  19123. FROM (feature
  19124. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19125. WHERE ((cvterm.name)::text = 'genomic_DNA'::text);
  19126. --
  19127. -- Name: genomic_island; Type: VIEW; Schema: so; Owner: -
  19128. --
  19129. CREATE VIEW genomic_island AS
  19130. SELECT feature.feature_id AS genomic_island_id,
  19131. feature.feature_id,
  19132. feature.dbxref_id,
  19133. feature.organism_id,
  19134. feature.name,
  19135. feature.uniquename,
  19136. feature.residues,
  19137. feature.seqlen,
  19138. feature.md5checksum,
  19139. feature.type_id,
  19140. feature.is_analysis,
  19141. feature.is_obsolete,
  19142. feature.timeaccessioned,
  19143. feature.timelastmodified
  19144. FROM (feature
  19145. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19146. WHERE ((((((((cvterm.name)::text = 'pathogenic_island'::text) OR ((cvterm.name)::text = 'metabolic_island'::text)) OR ((cvterm.name)::text = 'adaptive_island'::text)) OR ((cvterm.name)::text = 'symbiosis_island'::text)) OR ((cvterm.name)::text = 'cryptic_prophage'::text)) OR ((cvterm.name)::text = 'defective_conjugative_transposon'::text)) OR ((cvterm.name)::text = 'genomic_island'::text));
  19147. --
  19148. -- Name: genomically_contaminated_cdna_clone; Type: VIEW; Schema: so; Owner: -
  19149. --
  19150. CREATE VIEW genomically_contaminated_cdna_clone AS
  19151. SELECT feature.feature_id AS genomically_contaminated_cdna_clone_id,
  19152. feature.feature_id,
  19153. feature.dbxref_id,
  19154. feature.organism_id,
  19155. feature.name,
  19156. feature.uniquename,
  19157. feature.residues,
  19158. feature.seqlen,
  19159. feature.md5checksum,
  19160. feature.type_id,
  19161. feature.is_analysis,
  19162. feature.is_obsolete,
  19163. feature.timeaccessioned,
  19164. feature.timelastmodified
  19165. FROM (feature
  19166. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19167. WHERE ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text);
  19168. --
  19169. -- Name: germline_variant; Type: VIEW; Schema: so; Owner: -
  19170. --
  19171. CREATE VIEW germline_variant AS
  19172. SELECT feature.feature_id AS germline_variant_id,
  19173. feature.feature_id,
  19174. feature.dbxref_id,
  19175. feature.organism_id,
  19176. feature.name,
  19177. feature.uniquename,
  19178. feature.residues,
  19179. feature.seqlen,
  19180. feature.md5checksum,
  19181. feature.type_id,
  19182. feature.is_analysis,
  19183. feature.is_obsolete,
  19184. feature.timeaccessioned,
  19185. feature.timelastmodified
  19186. FROM (feature
  19187. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19188. WHERE ((cvterm.name)::text = 'germline_variant'::text);
  19189. --
  19190. -- Name: glutamic_acid; Type: VIEW; Schema: so; Owner: -
  19191. --
  19192. CREATE VIEW glutamic_acid AS
  19193. SELECT feature.feature_id AS glutamic_acid_id,
  19194. feature.feature_id,
  19195. feature.dbxref_id,
  19196. feature.organism_id,
  19197. feature.name,
  19198. feature.uniquename,
  19199. feature.residues,
  19200. feature.seqlen,
  19201. feature.md5checksum,
  19202. feature.type_id,
  19203. feature.is_analysis,
  19204. feature.is_obsolete,
  19205. feature.timeaccessioned,
  19206. feature.timelastmodified
  19207. FROM (feature
  19208. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19209. WHERE ((cvterm.name)::text = 'glutamic_acid'::text);
  19210. --
  19211. -- Name: glutamic_acid_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  19212. --
  19213. CREATE VIEW glutamic_acid_trna_primary_transcript AS
  19214. SELECT feature.feature_id AS glutamic_acid_trna_primary_transcript_id,
  19215. feature.feature_id,
  19216. feature.dbxref_id,
  19217. feature.organism_id,
  19218. feature.name,
  19219. feature.uniquename,
  19220. feature.residues,
  19221. feature.seqlen,
  19222. feature.md5checksum,
  19223. feature.type_id,
  19224. feature.is_analysis,
  19225. feature.is_obsolete,
  19226. feature.timeaccessioned,
  19227. feature.timelastmodified
  19228. FROM (feature
  19229. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19230. WHERE ((cvterm.name)::text = 'glutamic_acid_tRNA_primary_transcript'::text);
  19231. --
  19232. -- Name: glutamine; Type: VIEW; Schema: so; Owner: -
  19233. --
  19234. CREATE VIEW glutamine AS
  19235. SELECT feature.feature_id AS glutamine_id,
  19236. feature.feature_id,
  19237. feature.dbxref_id,
  19238. feature.organism_id,
  19239. feature.name,
  19240. feature.uniquename,
  19241. feature.residues,
  19242. feature.seqlen,
  19243. feature.md5checksum,
  19244. feature.type_id,
  19245. feature.is_analysis,
  19246. feature.is_obsolete,
  19247. feature.timeaccessioned,
  19248. feature.timelastmodified
  19249. FROM (feature
  19250. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19251. WHERE ((cvterm.name)::text = 'glutamine'::text);
  19252. --
  19253. -- Name: glutamine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  19254. --
  19255. CREATE VIEW glutamine_trna_primary_transcript AS
  19256. SELECT feature.feature_id AS glutamine_trna_primary_transcript_id,
  19257. feature.feature_id,
  19258. feature.dbxref_id,
  19259. feature.organism_id,
  19260. feature.name,
  19261. feature.uniquename,
  19262. feature.residues,
  19263. feature.seqlen,
  19264. feature.md5checksum,
  19265. feature.type_id,
  19266. feature.is_analysis,
  19267. feature.is_obsolete,
  19268. feature.timeaccessioned,
  19269. feature.timelastmodified
  19270. FROM (feature
  19271. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19272. WHERE ((cvterm.name)::text = 'glutamine_tRNA_primary_transcript'::text);
  19273. --
  19274. -- Name: glutaminyl_trna; Type: VIEW; Schema: so; Owner: -
  19275. --
  19276. CREATE VIEW glutaminyl_trna AS
  19277. SELECT feature.feature_id AS glutaminyl_trna_id,
  19278. feature.feature_id,
  19279. feature.dbxref_id,
  19280. feature.organism_id,
  19281. feature.name,
  19282. feature.uniquename,
  19283. feature.residues,
  19284. feature.seqlen,
  19285. feature.md5checksum,
  19286. feature.type_id,
  19287. feature.is_analysis,
  19288. feature.is_obsolete,
  19289. feature.timeaccessioned,
  19290. feature.timelastmodified
  19291. FROM (feature
  19292. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19293. WHERE ((cvterm.name)::text = 'glutaminyl_tRNA'::text);
  19294. --
  19295. -- Name: glutamyl_trna; Type: VIEW; Schema: so; Owner: -
  19296. --
  19297. CREATE VIEW glutamyl_trna AS
  19298. SELECT feature.feature_id AS glutamyl_trna_id,
  19299. feature.feature_id,
  19300. feature.dbxref_id,
  19301. feature.organism_id,
  19302. feature.name,
  19303. feature.uniquename,
  19304. feature.residues,
  19305. feature.seqlen,
  19306. feature.md5checksum,
  19307. feature.type_id,
  19308. feature.is_analysis,
  19309. feature.is_obsolete,
  19310. feature.timeaccessioned,
  19311. feature.timelastmodified
  19312. FROM (feature
  19313. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19314. WHERE ((cvterm.name)::text = 'glutamyl_tRNA'::text);
  19315. --
  19316. -- Name: glycine; Type: VIEW; Schema: so; Owner: -
  19317. --
  19318. CREATE VIEW glycine AS
  19319. SELECT feature.feature_id AS glycine_id,
  19320. feature.feature_id,
  19321. feature.dbxref_id,
  19322. feature.organism_id,
  19323. feature.name,
  19324. feature.uniquename,
  19325. feature.residues,
  19326. feature.seqlen,
  19327. feature.md5checksum,
  19328. feature.type_id,
  19329. feature.is_analysis,
  19330. feature.is_obsolete,
  19331. feature.timeaccessioned,
  19332. feature.timelastmodified
  19333. FROM (feature
  19334. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19335. WHERE ((cvterm.name)::text = 'glycine'::text);
  19336. --
  19337. -- Name: glycine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  19338. --
  19339. CREATE VIEW glycine_trna_primary_transcript AS
  19340. SELECT feature.feature_id AS glycine_trna_primary_transcript_id,
  19341. feature.feature_id,
  19342. feature.dbxref_id,
  19343. feature.organism_id,
  19344. feature.name,
  19345. feature.uniquename,
  19346. feature.residues,
  19347. feature.seqlen,
  19348. feature.md5checksum,
  19349. feature.type_id,
  19350. feature.is_analysis,
  19351. feature.is_obsolete,
  19352. feature.timeaccessioned,
  19353. feature.timelastmodified
  19354. FROM (feature
  19355. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19356. WHERE ((cvterm.name)::text = 'glycine_tRNA_primary_transcript'::text);
  19357. --
  19358. -- Name: glycyl_trna; Type: VIEW; Schema: so; Owner: -
  19359. --
  19360. CREATE VIEW glycyl_trna AS
  19361. SELECT feature.feature_id AS glycyl_trna_id,
  19362. feature.feature_id,
  19363. feature.dbxref_id,
  19364. feature.organism_id,
  19365. feature.name,
  19366. feature.uniquename,
  19367. feature.residues,
  19368. feature.seqlen,
  19369. feature.md5checksum,
  19370. feature.type_id,
  19371. feature.is_analysis,
  19372. feature.is_obsolete,
  19373. feature.timeaccessioned,
  19374. feature.timelastmodified
  19375. FROM (feature
  19376. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19377. WHERE ((cvterm.name)::text = 'glycyl_tRNA'::text);
  19378. --
  19379. -- Name: gna; Type: VIEW; Schema: so; Owner: -
  19380. --
  19381. CREATE VIEW gna AS
  19382. SELECT feature.feature_id AS gna_id,
  19383. feature.feature_id,
  19384. feature.dbxref_id,
  19385. feature.organism_id,
  19386. feature.name,
  19387. feature.uniquename,
  19388. feature.residues,
  19389. feature.seqlen,
  19390. feature.md5checksum,
  19391. feature.type_id,
  19392. feature.is_analysis,
  19393. feature.is_obsolete,
  19394. feature.timeaccessioned,
  19395. feature.timelastmodified
  19396. FROM (feature
  19397. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19398. WHERE ((((cvterm.name)::text = 'R_GNA'::text) OR ((cvterm.name)::text = 'S_GNA'::text)) OR ((cvterm.name)::text = 'GNA'::text));
  19399. --
  19400. -- Name: gna_oligo; Type: VIEW; Schema: so; Owner: -
  19401. --
  19402. CREATE VIEW gna_oligo AS
  19403. SELECT feature.feature_id AS gna_oligo_id,
  19404. feature.feature_id,
  19405. feature.dbxref_id,
  19406. feature.organism_id,
  19407. feature.name,
  19408. feature.uniquename,
  19409. feature.residues,
  19410. feature.seqlen,
  19411. feature.md5checksum,
  19412. feature.type_id,
  19413. feature.is_analysis,
  19414. feature.is_obsolete,
  19415. feature.timeaccessioned,
  19416. feature.timelastmodified
  19417. FROM (feature
  19418. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19419. WHERE ((((cvterm.name)::text = 'R_GNA_oligo'::text) OR ((cvterm.name)::text = 'S_GNA_oligo'::text)) OR ((cvterm.name)::text = 'GNA_oligo'::text));
  19420. --
  19421. -- Name: golden_path; Type: VIEW; Schema: so; Owner: -
  19422. --
  19423. CREATE VIEW golden_path AS
  19424. SELECT feature.feature_id AS golden_path_id,
  19425. feature.feature_id,
  19426. feature.dbxref_id,
  19427. feature.organism_id,
  19428. feature.name,
  19429. feature.uniquename,
  19430. feature.residues,
  19431. feature.seqlen,
  19432. feature.md5checksum,
  19433. feature.type_id,
  19434. feature.is_analysis,
  19435. feature.is_obsolete,
  19436. feature.timeaccessioned,
  19437. feature.timelastmodified
  19438. FROM (feature
  19439. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19440. WHERE ((cvterm.name)::text = 'golden_path'::text);
  19441. --
  19442. -- Name: golden_path_fragment; Type: VIEW; Schema: so; Owner: -
  19443. --
  19444. CREATE VIEW golden_path_fragment AS
  19445. SELECT feature.feature_id AS golden_path_fragment_id,
  19446. feature.feature_id,
  19447. feature.dbxref_id,
  19448. feature.organism_id,
  19449. feature.name,
  19450. feature.uniquename,
  19451. feature.residues,
  19452. feature.seqlen,
  19453. feature.md5checksum,
  19454. feature.type_id,
  19455. feature.is_analysis,
  19456. feature.is_obsolete,
  19457. feature.timeaccessioned,
  19458. feature.timelastmodified
  19459. FROM (feature
  19460. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19461. WHERE ((cvterm.name)::text = 'golden_path_fragment'::text);
  19462. --
  19463. -- Name: grna_encoding; Type: VIEW; Schema: so; Owner: -
  19464. --
  19465. CREATE VIEW grna_encoding AS
  19466. SELECT feature.feature_id AS grna_encoding_id,
  19467. feature.feature_id,
  19468. feature.dbxref_id,
  19469. feature.organism_id,
  19470. feature.name,
  19471. feature.uniquename,
  19472. feature.residues,
  19473. feature.seqlen,
  19474. feature.md5checksum,
  19475. feature.type_id,
  19476. feature.is_analysis,
  19477. feature.is_obsolete,
  19478. feature.timeaccessioned,
  19479. feature.timelastmodified
  19480. FROM (feature
  19481. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19482. WHERE ((cvterm.name)::text = 'gRNA_encoding'::text);
  19483. --
  19484. -- Name: grna_gene; Type: VIEW; Schema: so; Owner: -
  19485. --
  19486. CREATE VIEW grna_gene AS
  19487. SELECT feature.feature_id AS grna_gene_id,
  19488. feature.feature_id,
  19489. feature.dbxref_id,
  19490. feature.organism_id,
  19491. feature.name,
  19492. feature.uniquename,
  19493. feature.residues,
  19494. feature.seqlen,
  19495. feature.md5checksum,
  19496. feature.type_id,
  19497. feature.is_analysis,
  19498. feature.is_obsolete,
  19499. feature.timeaccessioned,
  19500. feature.timelastmodified
  19501. FROM (feature
  19502. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19503. WHERE ((cvterm.name)::text = 'gRNA_gene'::text);
  19504. --
  19505. -- Name: group_1_intron_homing_endonuclease_target_region; Type: VIEW; Schema: so; Owner: -
  19506. --
  19507. CREATE VIEW group_1_intron_homing_endonuclease_target_region AS
  19508. SELECT feature.feature_id AS group_1_intron_homing_endonuclease_target_region_id,
  19509. feature.feature_id,
  19510. feature.dbxref_id,
  19511. feature.organism_id,
  19512. feature.name,
  19513. feature.uniquename,
  19514. feature.residues,
  19515. feature.seqlen,
  19516. feature.md5checksum,
  19517. feature.type_id,
  19518. feature.is_analysis,
  19519. feature.is_obsolete,
  19520. feature.timeaccessioned,
  19521. feature.timelastmodified
  19522. FROM (feature
  19523. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19524. WHERE ((cvterm.name)::text = 'group_1_intron_homing_endonuclease_target_region'::text);
  19525. --
  19526. -- Name: group_i_intron; Type: VIEW; Schema: so; Owner: -
  19527. --
  19528. CREATE VIEW group_i_intron AS
  19529. SELECT feature.feature_id AS group_i_intron_id,
  19530. feature.feature_id,
  19531. feature.dbxref_id,
  19532. feature.organism_id,
  19533. feature.name,
  19534. feature.uniquename,
  19535. feature.residues,
  19536. feature.seqlen,
  19537. feature.md5checksum,
  19538. feature.type_id,
  19539. feature.is_analysis,
  19540. feature.is_obsolete,
  19541. feature.timeaccessioned,
  19542. feature.timelastmodified
  19543. FROM (feature
  19544. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19545. WHERE ((cvterm.name)::text = 'group_I_intron'::text);
  19546. --
  19547. -- Name: group_ii_intron; Type: VIEW; Schema: so; Owner: -
  19548. --
  19549. CREATE VIEW group_ii_intron AS
  19550. SELECT feature.feature_id AS group_ii_intron_id,
  19551. feature.feature_id,
  19552. feature.dbxref_id,
  19553. feature.organism_id,
  19554. feature.name,
  19555. feature.uniquename,
  19556. feature.residues,
  19557. feature.seqlen,
  19558. feature.md5checksum,
  19559. feature.type_id,
  19560. feature.is_analysis,
  19561. feature.is_obsolete,
  19562. feature.timeaccessioned,
  19563. feature.timelastmodified
  19564. FROM (feature
  19565. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19566. WHERE ((((cvterm.name)::text = 'group_IIA_intron'::text) OR ((cvterm.name)::text = 'group_IIB_intron'::text)) OR ((cvterm.name)::text = 'group_II_intron'::text));
  19567. --
  19568. -- Name: group_iia_intron; Type: VIEW; Schema: so; Owner: -
  19569. --
  19570. CREATE VIEW group_iia_intron AS
  19571. SELECT feature.feature_id AS group_iia_intron_id,
  19572. feature.feature_id,
  19573. feature.dbxref_id,
  19574. feature.organism_id,
  19575. feature.name,
  19576. feature.uniquename,
  19577. feature.residues,
  19578. feature.seqlen,
  19579. feature.md5checksum,
  19580. feature.type_id,
  19581. feature.is_analysis,
  19582. feature.is_obsolete,
  19583. feature.timeaccessioned,
  19584. feature.timelastmodified
  19585. FROM (feature
  19586. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19587. WHERE ((cvterm.name)::text = 'group_IIA_intron'::text);
  19588. --
  19589. -- Name: group_iib_intron; Type: VIEW; Schema: so; Owner: -
  19590. --
  19591. CREATE VIEW group_iib_intron AS
  19592. SELECT feature.feature_id AS group_iib_intron_id,
  19593. feature.feature_id,
  19594. feature.dbxref_id,
  19595. feature.organism_id,
  19596. feature.name,
  19597. feature.uniquename,
  19598. feature.residues,
  19599. feature.seqlen,
  19600. feature.md5checksum,
  19601. feature.type_id,
  19602. feature.is_analysis,
  19603. feature.is_obsolete,
  19604. feature.timeaccessioned,
  19605. feature.timelastmodified
  19606. FROM (feature
  19607. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19608. WHERE ((cvterm.name)::text = 'group_IIB_intron'::text);
  19609. --
  19610. -- Name: group_iii_intron; Type: VIEW; Schema: so; Owner: -
  19611. --
  19612. CREATE VIEW group_iii_intron AS
  19613. SELECT feature.feature_id AS group_iii_intron_id,
  19614. feature.feature_id,
  19615. feature.dbxref_id,
  19616. feature.organism_id,
  19617. feature.name,
  19618. feature.uniquename,
  19619. feature.residues,
  19620. feature.seqlen,
  19621. feature.md5checksum,
  19622. feature.type_id,
  19623. feature.is_analysis,
  19624. feature.is_obsolete,
  19625. feature.timeaccessioned,
  19626. feature.timelastmodified
  19627. FROM (feature
  19628. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19629. WHERE ((cvterm.name)::text = 'group_III_intron'::text);
  19630. --
  19631. -- Name: guide_rna; Type: VIEW; Schema: so; Owner: -
  19632. --
  19633. CREATE VIEW guide_rna AS
  19634. SELECT feature.feature_id AS guide_rna_id,
  19635. feature.feature_id,
  19636. feature.dbxref_id,
  19637. feature.organism_id,
  19638. feature.name,
  19639. feature.uniquename,
  19640. feature.residues,
  19641. feature.seqlen,
  19642. feature.md5checksum,
  19643. feature.type_id,
  19644. feature.is_analysis,
  19645. feature.is_obsolete,
  19646. feature.timeaccessioned,
  19647. feature.timelastmodified
  19648. FROM (feature
  19649. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19650. WHERE ((cvterm.name)::text = 'guide_RNA'::text);
  19651. --
  19652. -- Name: guide_rna_region; Type: VIEW; Schema: so; Owner: -
  19653. --
  19654. CREATE VIEW guide_rna_region AS
  19655. SELECT feature.feature_id AS guide_rna_region_id,
  19656. feature.feature_id,
  19657. feature.dbxref_id,
  19658. feature.organism_id,
  19659. feature.name,
  19660. feature.uniquename,
  19661. feature.residues,
  19662. feature.seqlen,
  19663. feature.md5checksum,
  19664. feature.type_id,
  19665. feature.is_analysis,
  19666. feature.is_obsolete,
  19667. feature.timeaccessioned,
  19668. feature.timelastmodified
  19669. FROM (feature
  19670. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19671. WHERE ((((cvterm.name)::text = 'anchor_region'::text) OR ((cvterm.name)::text = 'template_region'::text)) OR ((cvterm.name)::text = 'guide_RNA_region'::text));
  19672. --
  19673. -- Name: h2b_ubiquitination_site; Type: VIEW; Schema: so; Owner: -
  19674. --
  19675. CREATE VIEW h2b_ubiquitination_site AS
  19676. SELECT feature.feature_id AS h2b_ubiquitination_site_id,
  19677. feature.feature_id,
  19678. feature.dbxref_id,
  19679. feature.organism_id,
  19680. feature.name,
  19681. feature.uniquename,
  19682. feature.residues,
  19683. feature.seqlen,
  19684. feature.md5checksum,
  19685. feature.type_id,
  19686. feature.is_analysis,
  19687. feature.is_obsolete,
  19688. feature.timeaccessioned,
  19689. feature.timelastmodified
  19690. FROM (feature
  19691. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19692. WHERE ((cvterm.name)::text = 'H2B_ubiquitination_site'::text);
  19693. --
  19694. -- Name: h2bk5_monomethylation_site; Type: VIEW; Schema: so; Owner: -
  19695. --
  19696. CREATE VIEW h2bk5_monomethylation_site AS
  19697. SELECT feature.feature_id AS h2bk5_monomethylation_site_id,
  19698. feature.feature_id,
  19699. feature.dbxref_id,
  19700. feature.organism_id,
  19701. feature.name,
  19702. feature.uniquename,
  19703. feature.residues,
  19704. feature.seqlen,
  19705. feature.md5checksum,
  19706. feature.type_id,
  19707. feature.is_analysis,
  19708. feature.is_obsolete,
  19709. feature.timeaccessioned,
  19710. feature.timelastmodified
  19711. FROM (feature
  19712. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19713. WHERE ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text);
  19714. --
  19715. -- Name: h3k14_acetylation_site; Type: VIEW; Schema: so; Owner: -
  19716. --
  19717. CREATE VIEW h3k14_acetylation_site AS
  19718. SELECT feature.feature_id AS h3k14_acetylation_site_id,
  19719. feature.feature_id,
  19720. feature.dbxref_id,
  19721. feature.organism_id,
  19722. feature.name,
  19723. feature.uniquename,
  19724. feature.residues,
  19725. feature.seqlen,
  19726. feature.md5checksum,
  19727. feature.type_id,
  19728. feature.is_analysis,
  19729. feature.is_obsolete,
  19730. feature.timeaccessioned,
  19731. feature.timelastmodified
  19732. FROM (feature
  19733. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19734. WHERE ((cvterm.name)::text = 'H3K14_acetylation_site'::text);
  19735. --
  19736. -- Name: h3k18_acetylation_site; Type: VIEW; Schema: so; Owner: -
  19737. --
  19738. CREATE VIEW h3k18_acetylation_site AS
  19739. SELECT feature.feature_id AS h3k18_acetylation_site_id,
  19740. feature.feature_id,
  19741. feature.dbxref_id,
  19742. feature.organism_id,
  19743. feature.name,
  19744. feature.uniquename,
  19745. feature.residues,
  19746. feature.seqlen,
  19747. feature.md5checksum,
  19748. feature.type_id,
  19749. feature.is_analysis,
  19750. feature.is_obsolete,
  19751. feature.timeaccessioned,
  19752. feature.timelastmodified
  19753. FROM (feature
  19754. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19755. WHERE ((cvterm.name)::text = 'H3K18_acetylation_site'::text);
  19756. --
  19757. -- Name: h3k23_acylation_site; Type: VIEW; Schema: so; Owner: -
  19758. --
  19759. CREATE VIEW h3k23_acylation_site AS
  19760. SELECT feature.feature_id AS h3k23_acylation_site_id,
  19761. feature.feature_id,
  19762. feature.dbxref_id,
  19763. feature.organism_id,
  19764. feature.name,
  19765. feature.uniquename,
  19766. feature.residues,
  19767. feature.seqlen,
  19768. feature.md5checksum,
  19769. feature.type_id,
  19770. feature.is_analysis,
  19771. feature.is_obsolete,
  19772. feature.timeaccessioned,
  19773. feature.timelastmodified
  19774. FROM (feature
  19775. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19776. WHERE ((cvterm.name)::text = 'H3K23_acylation site'::text);
  19777. --
  19778. -- Name: h3k27_acylation_site; Type: VIEW; Schema: so; Owner: -
  19779. --
  19780. CREATE VIEW h3k27_acylation_site AS
  19781. SELECT feature.feature_id AS h3k27_acylation_site_id,
  19782. feature.feature_id,
  19783. feature.dbxref_id,
  19784. feature.organism_id,
  19785. feature.name,
  19786. feature.uniquename,
  19787. feature.residues,
  19788. feature.seqlen,
  19789. feature.md5checksum,
  19790. feature.type_id,
  19791. feature.is_analysis,
  19792. feature.is_obsolete,
  19793. feature.timeaccessioned,
  19794. feature.timelastmodified
  19795. FROM (feature
  19796. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19797. WHERE ((cvterm.name)::text = 'H3K27_acylation_site'::text);
  19798. --
  19799. -- Name: h3k27_dimethylation_site; Type: VIEW; Schema: so; Owner: -
  19800. --
  19801. CREATE VIEW h3k27_dimethylation_site AS
  19802. SELECT feature.feature_id AS h3k27_dimethylation_site_id,
  19803. feature.feature_id,
  19804. feature.dbxref_id,
  19805. feature.organism_id,
  19806. feature.name,
  19807. feature.uniquename,
  19808. feature.residues,
  19809. feature.seqlen,
  19810. feature.md5checksum,
  19811. feature.type_id,
  19812. feature.is_analysis,
  19813. feature.is_obsolete,
  19814. feature.timeaccessioned,
  19815. feature.timelastmodified
  19816. FROM (feature
  19817. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19818. WHERE ((cvterm.name)::text = 'H3K27_dimethylation_site'::text);
  19819. --
  19820. -- Name: h3k27_methylation_site; Type: VIEW; Schema: so; Owner: -
  19821. --
  19822. CREATE VIEW h3k27_methylation_site AS
  19823. SELECT feature.feature_id AS h3k27_methylation_site_id,
  19824. feature.feature_id,
  19825. feature.dbxref_id,
  19826. feature.organism_id,
  19827. feature.name,
  19828. feature.uniquename,
  19829. feature.residues,
  19830. feature.seqlen,
  19831. feature.md5checksum,
  19832. feature.type_id,
  19833. feature.is_analysis,
  19834. feature.is_obsolete,
  19835. feature.timeaccessioned,
  19836. feature.timelastmodified
  19837. FROM (feature
  19838. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19839. WHERE (((((cvterm.name)::text = 'H3K27_monomethylation_site'::text) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text));
  19840. --
  19841. -- Name: h3k27_monomethylation_site; Type: VIEW; Schema: so; Owner: -
  19842. --
  19843. CREATE VIEW h3k27_monomethylation_site AS
  19844. SELECT feature.feature_id AS h3k27_monomethylation_site_id,
  19845. feature.feature_id,
  19846. feature.dbxref_id,
  19847. feature.organism_id,
  19848. feature.name,
  19849. feature.uniquename,
  19850. feature.residues,
  19851. feature.seqlen,
  19852. feature.md5checksum,
  19853. feature.type_id,
  19854. feature.is_analysis,
  19855. feature.is_obsolete,
  19856. feature.timeaccessioned,
  19857. feature.timelastmodified
  19858. FROM (feature
  19859. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19860. WHERE ((cvterm.name)::text = 'H3K27_monomethylation_site'::text);
  19861. --
  19862. -- Name: h3k27_trimethylation_site; Type: VIEW; Schema: so; Owner: -
  19863. --
  19864. CREATE VIEW h3k27_trimethylation_site AS
  19865. SELECT feature.feature_id AS h3k27_trimethylation_site_id,
  19866. feature.feature_id,
  19867. feature.dbxref_id,
  19868. feature.organism_id,
  19869. feature.name,
  19870. feature.uniquename,
  19871. feature.residues,
  19872. feature.seqlen,
  19873. feature.md5checksum,
  19874. feature.type_id,
  19875. feature.is_analysis,
  19876. feature.is_obsolete,
  19877. feature.timeaccessioned,
  19878. feature.timelastmodified
  19879. FROM (feature
  19880. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19881. WHERE ((cvterm.name)::text = 'H3K27_trimethylation_site'::text);
  19882. --
  19883. -- Name: h3k36_dimethylation_site; Type: VIEW; Schema: so; Owner: -
  19884. --
  19885. CREATE VIEW h3k36_dimethylation_site AS
  19886. SELECT feature.feature_id AS h3k36_dimethylation_site_id,
  19887. feature.feature_id,
  19888. feature.dbxref_id,
  19889. feature.organism_id,
  19890. feature.name,
  19891. feature.uniquename,
  19892. feature.residues,
  19893. feature.seqlen,
  19894. feature.md5checksum,
  19895. feature.type_id,
  19896. feature.is_analysis,
  19897. feature.is_obsolete,
  19898. feature.timeaccessioned,
  19899. feature.timelastmodified
  19900. FROM (feature
  19901. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19902. WHERE ((cvterm.name)::text = 'H3K36_dimethylation_site'::text);
  19903. --
  19904. -- Name: h3k36_methylation_site; Type: VIEW; Schema: so; Owner: -
  19905. --
  19906. CREATE VIEW h3k36_methylation_site AS
  19907. SELECT feature.feature_id AS h3k36_methylation_site_id,
  19908. feature.feature_id,
  19909. feature.dbxref_id,
  19910. feature.organism_id,
  19911. feature.name,
  19912. feature.uniquename,
  19913. feature.residues,
  19914. feature.seqlen,
  19915. feature.md5checksum,
  19916. feature.type_id,
  19917. feature.is_analysis,
  19918. feature.is_obsolete,
  19919. feature.timeaccessioned,
  19920. feature.timelastmodified
  19921. FROM (feature
  19922. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19923. WHERE (((((cvterm.name)::text = 'H3K36_monomethylation_site'::text) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text));
  19924. --
  19925. -- Name: h3k36_monomethylation_site; Type: VIEW; Schema: so; Owner: -
  19926. --
  19927. CREATE VIEW h3k36_monomethylation_site AS
  19928. SELECT feature.feature_id AS h3k36_monomethylation_site_id,
  19929. feature.feature_id,
  19930. feature.dbxref_id,
  19931. feature.organism_id,
  19932. feature.name,
  19933. feature.uniquename,
  19934. feature.residues,
  19935. feature.seqlen,
  19936. feature.md5checksum,
  19937. feature.type_id,
  19938. feature.is_analysis,
  19939. feature.is_obsolete,
  19940. feature.timeaccessioned,
  19941. feature.timelastmodified
  19942. FROM (feature
  19943. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19944. WHERE ((cvterm.name)::text = 'H3K36_monomethylation_site'::text);
  19945. --
  19946. -- Name: h3k36_trimethylation_site; Type: VIEW; Schema: so; Owner: -
  19947. --
  19948. CREATE VIEW h3k36_trimethylation_site AS
  19949. SELECT feature.feature_id AS h3k36_trimethylation_site_id,
  19950. feature.feature_id,
  19951. feature.dbxref_id,
  19952. feature.organism_id,
  19953. feature.name,
  19954. feature.uniquename,
  19955. feature.residues,
  19956. feature.seqlen,
  19957. feature.md5checksum,
  19958. feature.type_id,
  19959. feature.is_analysis,
  19960. feature.is_obsolete,
  19961. feature.timeaccessioned,
  19962. feature.timelastmodified
  19963. FROM (feature
  19964. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19965. WHERE ((cvterm.name)::text = 'H3K36_trimethylation_site'::text);
  19966. --
  19967. -- Name: h3k4_dimethylation_site; Type: VIEW; Schema: so; Owner: -
  19968. --
  19969. CREATE VIEW h3k4_dimethylation_site AS
  19970. SELECT feature.feature_id AS h3k4_dimethylation_site_id,
  19971. feature.feature_id,
  19972. feature.dbxref_id,
  19973. feature.organism_id,
  19974. feature.name,
  19975. feature.uniquename,
  19976. feature.residues,
  19977. feature.seqlen,
  19978. feature.md5checksum,
  19979. feature.type_id,
  19980. feature.is_analysis,
  19981. feature.is_obsolete,
  19982. feature.timeaccessioned,
  19983. feature.timelastmodified
  19984. FROM (feature
  19985. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  19986. WHERE ((cvterm.name)::text = 'H3K4_dimethylation_site'::text);
  19987. --
  19988. -- Name: h3k4_methylation_site; Type: VIEW; Schema: so; Owner: -
  19989. --
  19990. CREATE VIEW h3k4_methylation_site AS
  19991. SELECT feature.feature_id AS h3k4_methylation_site_id,
  19992. feature.feature_id,
  19993. feature.dbxref_id,
  19994. feature.organism_id,
  19995. feature.name,
  19996. feature.uniquename,
  19997. feature.residues,
  19998. feature.seqlen,
  19999. feature.md5checksum,
  20000. feature.type_id,
  20001. feature.is_analysis,
  20002. feature.is_obsolete,
  20003. feature.timeaccessioned,
  20004. feature.timelastmodified
  20005. FROM (feature
  20006. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20007. WHERE (((((cvterm.name)::text = 'H3K4_monomethylation_site'::text) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text));
  20008. --
  20009. -- Name: h3k4_monomethylation_site; Type: VIEW; Schema: so; Owner: -
  20010. --
  20011. CREATE VIEW h3k4_monomethylation_site AS
  20012. SELECT feature.feature_id AS h3k4_monomethylation_site_id,
  20013. feature.feature_id,
  20014. feature.dbxref_id,
  20015. feature.organism_id,
  20016. feature.name,
  20017. feature.uniquename,
  20018. feature.residues,
  20019. feature.seqlen,
  20020. feature.md5checksum,
  20021. feature.type_id,
  20022. feature.is_analysis,
  20023. feature.is_obsolete,
  20024. feature.timeaccessioned,
  20025. feature.timelastmodified
  20026. FROM (feature
  20027. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20028. WHERE ((cvterm.name)::text = 'H3K4_monomethylation_site'::text);
  20029. --
  20030. -- Name: h3k4_trimethylation; Type: VIEW; Schema: so; Owner: -
  20031. --
  20032. CREATE VIEW h3k4_trimethylation AS
  20033. SELECT feature.feature_id AS h3k4_trimethylation_id,
  20034. feature.feature_id,
  20035. feature.dbxref_id,
  20036. feature.organism_id,
  20037. feature.name,
  20038. feature.uniquename,
  20039. feature.residues,
  20040. feature.seqlen,
  20041. feature.md5checksum,
  20042. feature.type_id,
  20043. feature.is_analysis,
  20044. feature.is_obsolete,
  20045. feature.timeaccessioned,
  20046. feature.timelastmodified
  20047. FROM (feature
  20048. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20049. WHERE ((cvterm.name)::text = 'H3K4_trimethylation'::text);
  20050. --
  20051. -- Name: h3k79_dimethylation_site; Type: VIEW; Schema: so; Owner: -
  20052. --
  20053. CREATE VIEW h3k79_dimethylation_site AS
  20054. SELECT feature.feature_id AS h3k79_dimethylation_site_id,
  20055. feature.feature_id,
  20056. feature.dbxref_id,
  20057. feature.organism_id,
  20058. feature.name,
  20059. feature.uniquename,
  20060. feature.residues,
  20061. feature.seqlen,
  20062. feature.md5checksum,
  20063. feature.type_id,
  20064. feature.is_analysis,
  20065. feature.is_obsolete,
  20066. feature.timeaccessioned,
  20067. feature.timelastmodified
  20068. FROM (feature
  20069. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20070. WHERE ((cvterm.name)::text = 'H3K79_dimethylation_site'::text);
  20071. --
  20072. -- Name: h3k79_methylation_site; Type: VIEW; Schema: so; Owner: -
  20073. --
  20074. CREATE VIEW h3k79_methylation_site AS
  20075. SELECT feature.feature_id AS h3k79_methylation_site_id,
  20076. feature.feature_id,
  20077. feature.dbxref_id,
  20078. feature.organism_id,
  20079. feature.name,
  20080. feature.uniquename,
  20081. feature.residues,
  20082. feature.seqlen,
  20083. feature.md5checksum,
  20084. feature.type_id,
  20085. feature.is_analysis,
  20086. feature.is_obsolete,
  20087. feature.timeaccessioned,
  20088. feature.timelastmodified
  20089. FROM (feature
  20090. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20091. WHERE (((((cvterm.name)::text = 'H3K79_monomethylation_site'::text) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text));
  20092. --
  20093. -- Name: h3k79_monomethylation_site; Type: VIEW; Schema: so; Owner: -
  20094. --
  20095. CREATE VIEW h3k79_monomethylation_site AS
  20096. SELECT feature.feature_id AS h3k79_monomethylation_site_id,
  20097. feature.feature_id,
  20098. feature.dbxref_id,
  20099. feature.organism_id,
  20100. feature.name,
  20101. feature.uniquename,
  20102. feature.residues,
  20103. feature.seqlen,
  20104. feature.md5checksum,
  20105. feature.type_id,
  20106. feature.is_analysis,
  20107. feature.is_obsolete,
  20108. feature.timeaccessioned,
  20109. feature.timelastmodified
  20110. FROM (feature
  20111. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20112. WHERE ((cvterm.name)::text = 'H3K79_monomethylation_site'::text);
  20113. --
  20114. -- Name: h3k79_trimethylation_site; Type: VIEW; Schema: so; Owner: -
  20115. --
  20116. CREATE VIEW h3k79_trimethylation_site AS
  20117. SELECT feature.feature_id AS h3k79_trimethylation_site_id,
  20118. feature.feature_id,
  20119. feature.dbxref_id,
  20120. feature.organism_id,
  20121. feature.name,
  20122. feature.uniquename,
  20123. feature.residues,
  20124. feature.seqlen,
  20125. feature.md5checksum,
  20126. feature.type_id,
  20127. feature.is_analysis,
  20128. feature.is_obsolete,
  20129. feature.timeaccessioned,
  20130. feature.timelastmodified
  20131. FROM (feature
  20132. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20133. WHERE ((cvterm.name)::text = 'H3K79_trimethylation_site'::text);
  20134. --
  20135. -- Name: h3k9_acetylation_site; Type: VIEW; Schema: so; Owner: -
  20136. --
  20137. CREATE VIEW h3k9_acetylation_site AS
  20138. SELECT feature.feature_id AS h3k9_acetylation_site_id,
  20139. feature.feature_id,
  20140. feature.dbxref_id,
  20141. feature.organism_id,
  20142. feature.name,
  20143. feature.uniquename,
  20144. feature.residues,
  20145. feature.seqlen,
  20146. feature.md5checksum,
  20147. feature.type_id,
  20148. feature.is_analysis,
  20149. feature.is_obsolete,
  20150. feature.timeaccessioned,
  20151. feature.timelastmodified
  20152. FROM (feature
  20153. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20154. WHERE ((cvterm.name)::text = 'H3K9_acetylation_site'::text);
  20155. --
  20156. -- Name: h3k9_dimethylation_site; Type: VIEW; Schema: so; Owner: -
  20157. --
  20158. CREATE VIEW h3k9_dimethylation_site AS
  20159. SELECT feature.feature_id AS h3k9_dimethylation_site_id,
  20160. feature.feature_id,
  20161. feature.dbxref_id,
  20162. feature.organism_id,
  20163. feature.name,
  20164. feature.uniquename,
  20165. feature.residues,
  20166. feature.seqlen,
  20167. feature.md5checksum,
  20168. feature.type_id,
  20169. feature.is_analysis,
  20170. feature.is_obsolete,
  20171. feature.timeaccessioned,
  20172. feature.timelastmodified
  20173. FROM (feature
  20174. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20175. WHERE ((cvterm.name)::text = 'H3K9_dimethylation_site'::text);
  20176. --
  20177. -- Name: h3k9_methylation_site; Type: VIEW; Schema: so; Owner: -
  20178. --
  20179. CREATE VIEW h3k9_methylation_site AS
  20180. SELECT feature.feature_id AS h3k9_methylation_site_id,
  20181. feature.feature_id,
  20182. feature.dbxref_id,
  20183. feature.organism_id,
  20184. feature.name,
  20185. feature.uniquename,
  20186. feature.residues,
  20187. feature.seqlen,
  20188. feature.md5checksum,
  20189. feature.type_id,
  20190. feature.is_analysis,
  20191. feature.is_obsolete,
  20192. feature.timeaccessioned,
  20193. feature.timelastmodified
  20194. FROM (feature
  20195. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20196. WHERE (((((cvterm.name)::text = 'H3K9_trimethylation_site'::text) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text));
  20197. --
  20198. -- Name: h3k9_monomethylation_site; Type: VIEW; Schema: so; Owner: -
  20199. --
  20200. CREATE VIEW h3k9_monomethylation_site AS
  20201. SELECT feature.feature_id AS h3k9_monomethylation_site_id,
  20202. feature.feature_id,
  20203. feature.dbxref_id,
  20204. feature.organism_id,
  20205. feature.name,
  20206. feature.uniquename,
  20207. feature.residues,
  20208. feature.seqlen,
  20209. feature.md5checksum,
  20210. feature.type_id,
  20211. feature.is_analysis,
  20212. feature.is_obsolete,
  20213. feature.timeaccessioned,
  20214. feature.timelastmodified
  20215. FROM (feature
  20216. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20217. WHERE ((cvterm.name)::text = 'H3K9_monomethylation_site'::text);
  20218. --
  20219. -- Name: h3k9_trimethylation_site; Type: VIEW; Schema: so; Owner: -
  20220. --
  20221. CREATE VIEW h3k9_trimethylation_site AS
  20222. SELECT feature.feature_id AS h3k9_trimethylation_site_id,
  20223. feature.feature_id,
  20224. feature.dbxref_id,
  20225. feature.organism_id,
  20226. feature.name,
  20227. feature.uniquename,
  20228. feature.residues,
  20229. feature.seqlen,
  20230. feature.md5checksum,
  20231. feature.type_id,
  20232. feature.is_analysis,
  20233. feature.is_obsolete,
  20234. feature.timeaccessioned,
  20235. feature.timelastmodified
  20236. FROM (feature
  20237. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20238. WHERE ((cvterm.name)::text = 'H3K9_trimethylation_site'::text);
  20239. --
  20240. -- Name: h4k16_acylation_site; Type: VIEW; Schema: so; Owner: -
  20241. --
  20242. CREATE VIEW h4k16_acylation_site AS
  20243. SELECT feature.feature_id AS h4k16_acylation_site_id,
  20244. feature.feature_id,
  20245. feature.dbxref_id,
  20246. feature.organism_id,
  20247. feature.name,
  20248. feature.uniquename,
  20249. feature.residues,
  20250. feature.seqlen,
  20251. feature.md5checksum,
  20252. feature.type_id,
  20253. feature.is_analysis,
  20254. feature.is_obsolete,
  20255. feature.timeaccessioned,
  20256. feature.timelastmodified
  20257. FROM (feature
  20258. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20259. WHERE ((cvterm.name)::text = 'H4K16_acylation_site'::text);
  20260. --
  20261. -- Name: h4k20_monomethylation_site; Type: VIEW; Schema: so; Owner: -
  20262. --
  20263. CREATE VIEW h4k20_monomethylation_site AS
  20264. SELECT feature.feature_id AS h4k20_monomethylation_site_id,
  20265. feature.feature_id,
  20266. feature.dbxref_id,
  20267. feature.organism_id,
  20268. feature.name,
  20269. feature.uniquename,
  20270. feature.residues,
  20271. feature.seqlen,
  20272. feature.md5checksum,
  20273. feature.type_id,
  20274. feature.is_analysis,
  20275. feature.is_obsolete,
  20276. feature.timeaccessioned,
  20277. feature.timelastmodified
  20278. FROM (feature
  20279. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20280. WHERE ((cvterm.name)::text = 'H4K20_monomethylation_site'::text);
  20281. --
  20282. -- Name: h4k5_acylation_site; Type: VIEW; Schema: so; Owner: -
  20283. --
  20284. CREATE VIEW h4k5_acylation_site AS
  20285. SELECT feature.feature_id AS h4k5_acylation_site_id,
  20286. feature.feature_id,
  20287. feature.dbxref_id,
  20288. feature.organism_id,
  20289. feature.name,
  20290. feature.uniquename,
  20291. feature.residues,
  20292. feature.seqlen,
  20293. feature.md5checksum,
  20294. feature.type_id,
  20295. feature.is_analysis,
  20296. feature.is_obsolete,
  20297. feature.timeaccessioned,
  20298. feature.timelastmodified
  20299. FROM (feature
  20300. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20301. WHERE ((cvterm.name)::text = 'H4K5_acylation_site'::text);
  20302. --
  20303. -- Name: h4k8_acylation_site; Type: VIEW; Schema: so; Owner: -
  20304. --
  20305. CREATE VIEW h4k8_acylation_site AS
  20306. SELECT feature.feature_id AS h4k8_acylation_site_id,
  20307. feature.feature_id,
  20308. feature.dbxref_id,
  20309. feature.organism_id,
  20310. feature.name,
  20311. feature.uniquename,
  20312. feature.residues,
  20313. feature.seqlen,
  20314. feature.md5checksum,
  20315. feature.type_id,
  20316. feature.is_analysis,
  20317. feature.is_obsolete,
  20318. feature.timeaccessioned,
  20319. feature.timelastmodified
  20320. FROM (feature
  20321. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20322. WHERE ((cvterm.name)::text = 'H4K8_acylation site'::text);
  20323. --
  20324. -- Name: h4k_acylation_region; Type: VIEW; Schema: so; Owner: -
  20325. --
  20326. CREATE VIEW h4k_acylation_region AS
  20327. SELECT feature.feature_id AS h4k_acylation_region_id,
  20328. feature.feature_id,
  20329. feature.dbxref_id,
  20330. feature.organism_id,
  20331. feature.name,
  20332. feature.uniquename,
  20333. feature.residues,
  20334. feature.seqlen,
  20335. feature.md5checksum,
  20336. feature.type_id,
  20337. feature.is_analysis,
  20338. feature.is_obsolete,
  20339. feature.timeaccessioned,
  20340. feature.timelastmodified
  20341. FROM (feature
  20342. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20343. WHERE ((cvterm.name)::text = 'H4K_acylation_region'::text);
  20344. --
  20345. -- Name: h_aca_box_snorna; Type: VIEW; Schema: so; Owner: -
  20346. --
  20347. CREATE VIEW h_aca_box_snorna AS
  20348. SELECT feature.feature_id AS h_aca_box_snorna_id,
  20349. feature.feature_id,
  20350. feature.dbxref_id,
  20351. feature.organism_id,
  20352. feature.name,
  20353. feature.uniquename,
  20354. feature.residues,
  20355. feature.seqlen,
  20356. feature.md5checksum,
  20357. feature.type_id,
  20358. feature.is_analysis,
  20359. feature.is_obsolete,
  20360. feature.timeaccessioned,
  20361. feature.timelastmodified
  20362. FROM (feature
  20363. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20364. WHERE (((cvterm.name)::text = 'pseudouridylation_guide_snoRNA'::text) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA'::text));
  20365. --
  20366. -- Name: h_aca_box_snorna_encoding; Type: VIEW; Schema: so; Owner: -
  20367. --
  20368. CREATE VIEW h_aca_box_snorna_encoding AS
  20369. SELECT feature.feature_id AS h_aca_box_snorna_encoding_id,
  20370. feature.feature_id,
  20371. feature.dbxref_id,
  20372. feature.organism_id,
  20373. feature.name,
  20374. feature.uniquename,
  20375. feature.residues,
  20376. feature.seqlen,
  20377. feature.md5checksum,
  20378. feature.type_id,
  20379. feature.is_analysis,
  20380. feature.is_obsolete,
  20381. feature.timeaccessioned,
  20382. feature.timelastmodified
  20383. FROM (feature
  20384. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20385. WHERE ((cvterm.name)::text = 'H_ACA_box_snoRNA_encoding'::text);
  20386. --
  20387. -- Name: h_aca_box_snorna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  20388. --
  20389. CREATE VIEW h_aca_box_snorna_primary_transcript AS
  20390. SELECT feature.feature_id AS h_aca_box_snorna_primary_transcript_id,
  20391. feature.feature_id,
  20392. feature.dbxref_id,
  20393. feature.organism_id,
  20394. feature.name,
  20395. feature.uniquename,
  20396. feature.residues,
  20397. feature.seqlen,
  20398. feature.md5checksum,
  20399. feature.type_id,
  20400. feature.is_analysis,
  20401. feature.is_obsolete,
  20402. feature.timeaccessioned,
  20403. feature.timelastmodified
  20404. FROM (feature
  20405. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20406. WHERE ((cvterm.name)::text = 'H_ACA_box_snoRNA_primary_transcript'::text);
  20407. --
  20408. -- Name: h_pseudoknot; Type: VIEW; Schema: so; Owner: -
  20409. --
  20410. CREATE VIEW h_pseudoknot AS
  20411. SELECT feature.feature_id AS h_pseudoknot_id,
  20412. feature.feature_id,
  20413. feature.dbxref_id,
  20414. feature.organism_id,
  20415. feature.name,
  20416. feature.uniquename,
  20417. feature.residues,
  20418. feature.seqlen,
  20419. feature.md5checksum,
  20420. feature.type_id,
  20421. feature.is_analysis,
  20422. feature.is_obsolete,
  20423. feature.timeaccessioned,
  20424. feature.timelastmodified
  20425. FROM (feature
  20426. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20427. WHERE ((cvterm.name)::text = 'H_pseudoknot'::text);
  20428. --
  20429. -- Name: hammerhead_ribozyme; Type: VIEW; Schema: so; Owner: -
  20430. --
  20431. CREATE VIEW hammerhead_ribozyme AS
  20432. SELECT feature.feature_id AS hammerhead_ribozyme_id,
  20433. feature.feature_id,
  20434. feature.dbxref_id,
  20435. feature.organism_id,
  20436. feature.name,
  20437. feature.uniquename,
  20438. feature.residues,
  20439. feature.seqlen,
  20440. feature.md5checksum,
  20441. feature.type_id,
  20442. feature.is_analysis,
  20443. feature.is_obsolete,
  20444. feature.timeaccessioned,
  20445. feature.timelastmodified
  20446. FROM (feature
  20447. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20448. WHERE ((cvterm.name)::text = 'hammerhead_ribozyme'::text);
  20449. --
  20450. -- Name: haplotype; Type: VIEW; Schema: so; Owner: -
  20451. --
  20452. CREATE VIEW haplotype AS
  20453. SELECT feature.feature_id AS haplotype_id,
  20454. feature.feature_id,
  20455. feature.dbxref_id,
  20456. feature.organism_id,
  20457. feature.name,
  20458. feature.uniquename,
  20459. feature.residues,
  20460. feature.seqlen,
  20461. feature.md5checksum,
  20462. feature.type_id,
  20463. feature.is_analysis,
  20464. feature.is_obsolete,
  20465. feature.timeaccessioned,
  20466. feature.timelastmodified
  20467. FROM (feature
  20468. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20469. WHERE ((cvterm.name)::text = 'haplotype'::text);
  20470. --
  20471. -- Name: haplotype_block; Type: VIEW; Schema: so; Owner: -
  20472. --
  20473. CREATE VIEW haplotype_block AS
  20474. SELECT feature.feature_id AS haplotype_block_id,
  20475. feature.feature_id,
  20476. feature.dbxref_id,
  20477. feature.organism_id,
  20478. feature.name,
  20479. feature.uniquename,
  20480. feature.residues,
  20481. feature.seqlen,
  20482. feature.md5checksum,
  20483. feature.type_id,
  20484. feature.is_analysis,
  20485. feature.is_obsolete,
  20486. feature.timeaccessioned,
  20487. feature.timelastmodified
  20488. FROM (feature
  20489. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20490. WHERE ((cvterm.name)::text = 'haplotype_block'::text);
  20491. --
  20492. -- Name: helitron; Type: VIEW; Schema: so; Owner: -
  20493. --
  20494. CREATE VIEW helitron AS
  20495. SELECT feature.feature_id AS helitron_id,
  20496. feature.feature_id,
  20497. feature.dbxref_id,
  20498. feature.organism_id,
  20499. feature.name,
  20500. feature.uniquename,
  20501. feature.residues,
  20502. feature.seqlen,
  20503. feature.md5checksum,
  20504. feature.type_id,
  20505. feature.is_analysis,
  20506. feature.is_obsolete,
  20507. feature.timeaccessioned,
  20508. feature.timelastmodified
  20509. FROM (feature
  20510. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20511. WHERE ((cvterm.name)::text = 'helitron'::text);
  20512. --
  20513. -- Name: helix_turn_helix; Type: VIEW; Schema: so; Owner: -
  20514. --
  20515. CREATE VIEW helix_turn_helix AS
  20516. SELECT feature.feature_id AS helix_turn_helix_id,
  20517. feature.feature_id,
  20518. feature.dbxref_id,
  20519. feature.organism_id,
  20520. feature.name,
  20521. feature.uniquename,
  20522. feature.residues,
  20523. feature.seqlen,
  20524. feature.md5checksum,
  20525. feature.type_id,
  20526. feature.is_analysis,
  20527. feature.is_obsolete,
  20528. feature.timeaccessioned,
  20529. feature.timelastmodified
  20530. FROM (feature
  20531. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20532. WHERE ((cvterm.name)::text = 'helix_turn_helix'::text);
  20533. --
  20534. -- Name: heptamer_of_recombination_feature_of_vertebrate_im_sys_gene; Type: VIEW; Schema: so; Owner: -
  20535. --
  20536. CREATE VIEW heptamer_of_recombination_feature_of_vertebrate_im_sys_gene AS
  20537. SELECT feature.feature_id AS heptamer_of_recombination_feature_of_vertebrate_im_sys_gene_id,
  20538. feature.feature_id,
  20539. feature.dbxref_id,
  20540. feature.organism_id,
  20541. feature.name,
  20542. feature.uniquename,
  20543. feature.residues,
  20544. feature.seqlen,
  20545. feature.md5checksum,
  20546. feature.type_id,
  20547. feature.is_analysis,
  20548. feature.is_obsolete,
  20549. feature.timeaccessioned,
  20550. feature.timelastmodified
  20551. FROM (feature
  20552. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20553. WHERE ((((((cvterm.name)::text = 'three_prime_D_heptamer'::text) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text));
  20554. --
  20555. -- Name: heritable_phenotypic_marker; Type: VIEW; Schema: so; Owner: -
  20556. --
  20557. CREATE VIEW heritable_phenotypic_marker AS
  20558. SELECT feature.feature_id AS heritable_phenotypic_marker_id,
  20559. feature.feature_id,
  20560. feature.dbxref_id,
  20561. feature.organism_id,
  20562. feature.name,
  20563. feature.uniquename,
  20564. feature.residues,
  20565. feature.seqlen,
  20566. feature.md5checksum,
  20567. feature.type_id,
  20568. feature.is_analysis,
  20569. feature.is_obsolete,
  20570. feature.timeaccessioned,
  20571. feature.timelastmodified
  20572. FROM (feature
  20573. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20574. WHERE ((cvterm.name)::text = 'heritable_phenotypic_marker'::text);
  20575. --
  20576. -- Name: hetero_compound_chromosome; Type: VIEW; Schema: so; Owner: -
  20577. --
  20578. CREATE VIEW hetero_compound_chromosome AS
  20579. SELECT feature.feature_id AS hetero_compound_chromosome_id,
  20580. feature.feature_id,
  20581. feature.dbxref_id,
  20582. feature.organism_id,
  20583. feature.name,
  20584. feature.uniquename,
  20585. feature.residues,
  20586. feature.seqlen,
  20587. feature.md5checksum,
  20588. feature.type_id,
  20589. feature.is_analysis,
  20590. feature.is_obsolete,
  20591. feature.timeaccessioned,
  20592. feature.timelastmodified
  20593. FROM (feature
  20594. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20595. WHERE ((cvterm.name)::text = 'hetero_compound_chromosome'::text);
  20596. --
  20597. -- Name: high_identity_region; Type: VIEW; Schema: so; Owner: -
  20598. --
  20599. CREATE VIEW high_identity_region AS
  20600. SELECT feature.feature_id AS high_identity_region_id,
  20601. feature.feature_id,
  20602. feature.dbxref_id,
  20603. feature.organism_id,
  20604. feature.name,
  20605. feature.uniquename,
  20606. feature.residues,
  20607. feature.seqlen,
  20608. feature.md5checksum,
  20609. feature.type_id,
  20610. feature.is_analysis,
  20611. feature.is_obsolete,
  20612. feature.timeaccessioned,
  20613. feature.timelastmodified
  20614. FROM (feature
  20615. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20616. WHERE ((cvterm.name)::text = 'high_identity_region'::text);
  20617. --
  20618. -- Name: high_quality_draft; Type: VIEW; Schema: so; Owner: -
  20619. --
  20620. CREATE VIEW high_quality_draft AS
  20621. SELECT feature.feature_id AS high_quality_draft_id,
  20622. feature.feature_id,
  20623. feature.dbxref_id,
  20624. feature.organism_id,
  20625. feature.name,
  20626. feature.uniquename,
  20627. feature.residues,
  20628. feature.seqlen,
  20629. feature.md5checksum,
  20630. feature.type_id,
  20631. feature.is_analysis,
  20632. feature.is_obsolete,
  20633. feature.timeaccessioned,
  20634. feature.timelastmodified
  20635. FROM (feature
  20636. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20637. WHERE ((cvterm.name)::text = 'high_quality_draft'::text);
  20638. --
  20639. -- Name: histidine; Type: VIEW; Schema: so; Owner: -
  20640. --
  20641. CREATE VIEW histidine AS
  20642. SELECT feature.feature_id AS histidine_id,
  20643. feature.feature_id,
  20644. feature.dbxref_id,
  20645. feature.organism_id,
  20646. feature.name,
  20647. feature.uniquename,
  20648. feature.residues,
  20649. feature.seqlen,
  20650. feature.md5checksum,
  20651. feature.type_id,
  20652. feature.is_analysis,
  20653. feature.is_obsolete,
  20654. feature.timeaccessioned,
  20655. feature.timelastmodified
  20656. FROM (feature
  20657. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20658. WHERE ((cvterm.name)::text = 'histidine'::text);
  20659. --
  20660. -- Name: histidine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  20661. --
  20662. CREATE VIEW histidine_trna_primary_transcript AS
  20663. SELECT feature.feature_id AS histidine_trna_primary_transcript_id,
  20664. feature.feature_id,
  20665. feature.dbxref_id,
  20666. feature.organism_id,
  20667. feature.name,
  20668. feature.uniquename,
  20669. feature.residues,
  20670. feature.seqlen,
  20671. feature.md5checksum,
  20672. feature.type_id,
  20673. feature.is_analysis,
  20674. feature.is_obsolete,
  20675. feature.timeaccessioned,
  20676. feature.timelastmodified
  20677. FROM (feature
  20678. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20679. WHERE ((cvterm.name)::text = 'histidine_tRNA_primary_transcript'::text);
  20680. --
  20681. -- Name: histidyl_trna; Type: VIEW; Schema: so; Owner: -
  20682. --
  20683. CREATE VIEW histidyl_trna AS
  20684. SELECT feature.feature_id AS histidyl_trna_id,
  20685. feature.feature_id,
  20686. feature.dbxref_id,
  20687. feature.organism_id,
  20688. feature.name,
  20689. feature.uniquename,
  20690. feature.residues,
  20691. feature.seqlen,
  20692. feature.md5checksum,
  20693. feature.type_id,
  20694. feature.is_analysis,
  20695. feature.is_obsolete,
  20696. feature.timeaccessioned,
  20697. feature.timelastmodified
  20698. FROM (feature
  20699. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20700. WHERE ((cvterm.name)::text = 'histidyl_tRNA'::text);
  20701. --
  20702. -- Name: histone_acetylation_site; Type: VIEW; Schema: so; Owner: -
  20703. --
  20704. CREATE VIEW histone_acetylation_site AS
  20705. SELECT feature.feature_id AS histone_acetylation_site_id,
  20706. feature.feature_id,
  20707. feature.dbxref_id,
  20708. feature.organism_id,
  20709. feature.name,
  20710. feature.uniquename,
  20711. feature.residues,
  20712. feature.seqlen,
  20713. feature.md5checksum,
  20714. feature.type_id,
  20715. feature.is_analysis,
  20716. feature.is_obsolete,
  20717. feature.timeaccessioned,
  20718. feature.timelastmodified
  20719. FROM (feature
  20720. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20721. WHERE ((((((((((cvterm.name)::text = 'H3K9_acetylation_site'::text) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text));
  20722. --
  20723. -- Name: histone_acylation_region; Type: VIEW; Schema: so; Owner: -
  20724. --
  20725. CREATE VIEW histone_acylation_region AS
  20726. SELECT feature.feature_id AS histone_acylation_region_id,
  20727. feature.feature_id,
  20728. feature.dbxref_id,
  20729. feature.organism_id,
  20730. feature.name,
  20731. feature.uniquename,
  20732. feature.residues,
  20733. feature.seqlen,
  20734. feature.md5checksum,
  20735. feature.type_id,
  20736. feature.is_analysis,
  20737. feature.is_obsolete,
  20738. feature.timeaccessioned,
  20739. feature.timelastmodified
  20740. FROM (feature
  20741. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20742. WHERE (((cvterm.name)::text = 'H4K_acylation_region'::text) OR ((cvterm.name)::text = 'histone_acylation_region'::text));
  20743. --
  20744. -- Name: histone_binding_site; Type: VIEW; Schema: so; Owner: -
  20745. --
  20746. CREATE VIEW histone_binding_site AS
  20747. SELECT feature.feature_id AS histone_binding_site_id,
  20748. feature.feature_id,
  20749. feature.dbxref_id,
  20750. feature.organism_id,
  20751. feature.name,
  20752. feature.uniquename,
  20753. feature.residues,
  20754. feature.seqlen,
  20755. feature.md5checksum,
  20756. feature.type_id,
  20757. feature.is_analysis,
  20758. feature.is_obsolete,
  20759. feature.timeaccessioned,
  20760. feature.timelastmodified
  20761. FROM (feature
  20762. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20763. WHERE ((cvterm.name)::text = 'histone_binding_site'::text);
  20764. --
  20765. -- Name: histone_methylation_site; Type: VIEW; Schema: so; Owner: -
  20766. --
  20767. CREATE VIEW histone_methylation_site AS
  20768. SELECT feature.feature_id AS histone_methylation_site_id,
  20769. feature.feature_id,
  20770. feature.dbxref_id,
  20771. feature.organism_id,
  20772. feature.name,
  20773. feature.uniquename,
  20774. feature.residues,
  20775. feature.seqlen,
  20776. feature.md5checksum,
  20777. feature.type_id,
  20778. feature.is_analysis,
  20779. feature.is_obsolete,
  20780. feature.timeaccessioned,
  20781. feature.timelastmodified
  20782. FROM (feature
  20783. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20784. WHERE ((((((((((((((((((((((((cvterm.name)::text = 'H4K20_monomethylation_site'::text) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text));
  20785. --
  20786. -- Name: histone_modification; Type: VIEW; Schema: so; Owner: -
  20787. --
  20788. CREATE VIEW histone_modification AS
  20789. SELECT feature.feature_id AS histone_modification_id,
  20790. feature.feature_id,
  20791. feature.dbxref_id,
  20792. feature.organism_id,
  20793. feature.name,
  20794. feature.uniquename,
  20795. feature.residues,
  20796. feature.seqlen,
  20797. feature.md5checksum,
  20798. feature.type_id,
  20799. feature.is_analysis,
  20800. feature.is_obsolete,
  20801. feature.timeaccessioned,
  20802. feature.timelastmodified
  20803. FROM (feature
  20804. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20805. WHERE ((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'histone_methylation_site'::text) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'histone_modification'::text));
  20806. --
  20807. -- Name: histone_ubiqitination_site; Type: VIEW; Schema: so; Owner: -
  20808. --
  20809. CREATE VIEW histone_ubiqitination_site AS
  20810. SELECT feature.feature_id AS histone_ubiqitination_site_id,
  20811. feature.feature_id,
  20812. feature.dbxref_id,
  20813. feature.organism_id,
  20814. feature.name,
  20815. feature.uniquename,
  20816. feature.residues,
  20817. feature.seqlen,
  20818. feature.md5checksum,
  20819. feature.type_id,
  20820. feature.is_analysis,
  20821. feature.is_obsolete,
  20822. feature.timeaccessioned,
  20823. feature.timelastmodified
  20824. FROM (feature
  20825. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20826. WHERE (((cvterm.name)::text = 'H2B_ubiquitination_site'::text) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text));
  20827. --
  20828. -- Name: homing_endonuclease_binding_site; Type: VIEW; Schema: so; Owner: -
  20829. --
  20830. CREATE VIEW homing_endonuclease_binding_site AS
  20831. SELECT feature.feature_id AS homing_endonuclease_binding_site_id,
  20832. feature.feature_id,
  20833. feature.dbxref_id,
  20834. feature.organism_id,
  20835. feature.name,
  20836. feature.uniquename,
  20837. feature.residues,
  20838. feature.seqlen,
  20839. feature.md5checksum,
  20840. feature.type_id,
  20841. feature.is_analysis,
  20842. feature.is_obsolete,
  20843. feature.timeaccessioned,
  20844. feature.timelastmodified
  20845. FROM (feature
  20846. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20847. WHERE ((cvterm.name)::text = 'homing_endonuclease_binding_site'::text);
  20848. --
  20849. -- Name: homo_compound_chromosome; Type: VIEW; Schema: so; Owner: -
  20850. --
  20851. CREATE VIEW homo_compound_chromosome AS
  20852. SELECT feature.feature_id AS homo_compound_chromosome_id,
  20853. feature.feature_id,
  20854. feature.dbxref_id,
  20855. feature.organism_id,
  20856. feature.name,
  20857. feature.uniquename,
  20858. feature.residues,
  20859. feature.seqlen,
  20860. feature.md5checksum,
  20861. feature.type_id,
  20862. feature.is_analysis,
  20863. feature.is_obsolete,
  20864. feature.timeaccessioned,
  20865. feature.timelastmodified
  20866. FROM (feature
  20867. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20868. WHERE ((cvterm.name)::text = 'homo_compound_chromosome'::text);
  20869. --
  20870. -- Name: homologous; Type: VIEW; Schema: so; Owner: -
  20871. --
  20872. CREATE VIEW homologous AS
  20873. SELECT feature.feature_id AS homologous_id,
  20874. feature.feature_id,
  20875. feature.dbxref_id,
  20876. feature.organism_id,
  20877. feature.name,
  20878. feature.uniquename,
  20879. feature.residues,
  20880. feature.seqlen,
  20881. feature.md5checksum,
  20882. feature.type_id,
  20883. feature.is_analysis,
  20884. feature.is_obsolete,
  20885. feature.timeaccessioned,
  20886. feature.timelastmodified
  20887. FROM (feature
  20888. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20889. WHERE ((((cvterm.name)::text = 'orthologous'::text) OR ((cvterm.name)::text = 'paralogous'::text)) OR ((cvterm.name)::text = 'homologous'::text));
  20890. --
  20891. -- Name: homologous_region; Type: VIEW; Schema: so; Owner: -
  20892. --
  20893. CREATE VIEW homologous_region AS
  20894. SELECT feature.feature_id AS homologous_region_id,
  20895. feature.feature_id,
  20896. feature.dbxref_id,
  20897. feature.organism_id,
  20898. feature.name,
  20899. feature.uniquename,
  20900. feature.residues,
  20901. feature.seqlen,
  20902. feature.md5checksum,
  20903. feature.type_id,
  20904. feature.is_analysis,
  20905. feature.is_obsolete,
  20906. feature.timeaccessioned,
  20907. feature.timelastmodified
  20908. FROM (feature
  20909. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20910. WHERE ((((cvterm.name)::text = 'paralogous_region'::text) OR ((cvterm.name)::text = 'orthologous_region'::text)) OR ((cvterm.name)::text = 'homologous_region'::text));
  20911. --
  20912. -- Name: hoogsteen_base_pair; Type: VIEW; Schema: so; Owner: -
  20913. --
  20914. CREATE VIEW hoogsteen_base_pair AS
  20915. SELECT feature.feature_id AS hoogsteen_base_pair_id,
  20916. feature.feature_id,
  20917. feature.dbxref_id,
  20918. feature.organism_id,
  20919. feature.name,
  20920. feature.uniquename,
  20921. feature.residues,
  20922. feature.seqlen,
  20923. feature.md5checksum,
  20924. feature.type_id,
  20925. feature.is_analysis,
  20926. feature.is_obsolete,
  20927. feature.timeaccessioned,
  20928. feature.timelastmodified
  20929. FROM (feature
  20930. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20931. WHERE ((cvterm.name)::text = 'Hoogsteen_base_pair'::text);
  20932. --
  20933. -- Name: hydrophobic_region_of_peptide; Type: VIEW; Schema: so; Owner: -
  20934. --
  20935. CREATE VIEW hydrophobic_region_of_peptide AS
  20936. SELECT feature.feature_id AS hydrophobic_region_of_peptide_id,
  20937. feature.feature_id,
  20938. feature.dbxref_id,
  20939. feature.organism_id,
  20940. feature.name,
  20941. feature.uniquename,
  20942. feature.residues,
  20943. feature.seqlen,
  20944. feature.md5checksum,
  20945. feature.type_id,
  20946. feature.is_analysis,
  20947. feature.is_obsolete,
  20948. feature.timeaccessioned,
  20949. feature.timelastmodified
  20950. FROM (feature
  20951. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20952. WHERE ((cvterm.name)::text = 'hydrophobic_region_of_peptide'::text);
  20953. --
  20954. -- Name: hydroxywybutosine; Type: VIEW; Schema: so; Owner: -
  20955. --
  20956. CREATE VIEW hydroxywybutosine AS
  20957. SELECT feature.feature_id AS hydroxywybutosine_id,
  20958. feature.feature_id,
  20959. feature.dbxref_id,
  20960. feature.organism_id,
  20961. feature.name,
  20962. feature.uniquename,
  20963. feature.residues,
  20964. feature.seqlen,
  20965. feature.md5checksum,
  20966. feature.type_id,
  20967. feature.is_analysis,
  20968. feature.is_obsolete,
  20969. feature.timeaccessioned,
  20970. feature.timelastmodified
  20971. FROM (feature
  20972. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20973. WHERE ((cvterm.name)::text = 'hydroxywybutosine'::text);
  20974. --
  20975. -- Name: hyperploid; Type: VIEW; Schema: so; Owner: -
  20976. --
  20977. CREATE VIEW hyperploid AS
  20978. SELECT feature.feature_id AS hyperploid_id,
  20979. feature.feature_id,
  20980. feature.dbxref_id,
  20981. feature.organism_id,
  20982. feature.name,
  20983. feature.uniquename,
  20984. feature.residues,
  20985. feature.seqlen,
  20986. feature.md5checksum,
  20987. feature.type_id,
  20988. feature.is_analysis,
  20989. feature.is_obsolete,
  20990. feature.timeaccessioned,
  20991. feature.timelastmodified
  20992. FROM (feature
  20993. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  20994. WHERE ((cvterm.name)::text = 'hyperploid'::text);
  20995. --
  20996. -- Name: hypoploid; Type: VIEW; Schema: so; Owner: -
  20997. --
  20998. CREATE VIEW hypoploid AS
  20999. SELECT feature.feature_id AS hypoploid_id,
  21000. feature.feature_id,
  21001. feature.dbxref_id,
  21002. feature.organism_id,
  21003. feature.name,
  21004. feature.uniquename,
  21005. feature.residues,
  21006. feature.seqlen,
  21007. feature.md5checksum,
  21008. feature.type_id,
  21009. feature.is_analysis,
  21010. feature.is_obsolete,
  21011. feature.timeaccessioned,
  21012. feature.timelastmodified
  21013. FROM (feature
  21014. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21015. WHERE ((cvterm.name)::text = 'hypoploid'::text);
  21016. --
  21017. -- Name: i_motif; Type: VIEW; Schema: so; Owner: -
  21018. --
  21019. CREATE VIEW i_motif AS
  21020. SELECT feature.feature_id AS i_motif_id,
  21021. feature.feature_id,
  21022. feature.dbxref_id,
  21023. feature.organism_id,
  21024. feature.name,
  21025. feature.uniquename,
  21026. feature.residues,
  21027. feature.seqlen,
  21028. feature.md5checksum,
  21029. feature.type_id,
  21030. feature.is_analysis,
  21031. feature.is_obsolete,
  21032. feature.timeaccessioned,
  21033. feature.timelastmodified
  21034. FROM (feature
  21035. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21036. WHERE ((cvterm.name)::text = 'i_motif'::text);
  21037. --
  21038. -- Name: idna; Type: VIEW; Schema: so; Owner: -
  21039. --
  21040. CREATE VIEW idna AS
  21041. SELECT feature.feature_id AS idna_id,
  21042. feature.feature_id,
  21043. feature.dbxref_id,
  21044. feature.organism_id,
  21045. feature.name,
  21046. feature.uniquename,
  21047. feature.residues,
  21048. feature.seqlen,
  21049. feature.md5checksum,
  21050. feature.type_id,
  21051. feature.is_analysis,
  21052. feature.is_obsolete,
  21053. feature.timeaccessioned,
  21054. feature.timelastmodified
  21055. FROM (feature
  21056. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21057. WHERE ((cvterm.name)::text = 'iDNA'::text);
  21058. --
  21059. -- Name: immature_peptide_region; Type: VIEW; Schema: so; Owner: -
  21060. --
  21061. CREATE VIEW immature_peptide_region AS
  21062. SELECT feature.feature_id AS immature_peptide_region_id,
  21063. feature.feature_id,
  21064. feature.dbxref_id,
  21065. feature.organism_id,
  21066. feature.name,
  21067. feature.uniquename,
  21068. feature.residues,
  21069. feature.seqlen,
  21070. feature.md5checksum,
  21071. feature.type_id,
  21072. feature.is_analysis,
  21073. feature.is_obsolete,
  21074. feature.timeaccessioned,
  21075. feature.timelastmodified
  21076. FROM (feature
  21077. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21078. WHERE ((cvterm.name)::text = 'immature_peptide_region'::text);
  21079. --
  21080. -- Name: imprinted; Type: VIEW; Schema: so; Owner: -
  21081. --
  21082. CREATE VIEW imprinted AS
  21083. SELECT feature.feature_id AS imprinted_id,
  21084. feature.feature_id,
  21085. feature.dbxref_id,
  21086. feature.organism_id,
  21087. feature.name,
  21088. feature.uniquename,
  21089. feature.residues,
  21090. feature.seqlen,
  21091. feature.md5checksum,
  21092. feature.type_id,
  21093. feature.is_analysis,
  21094. feature.is_obsolete,
  21095. feature.timeaccessioned,
  21096. feature.timelastmodified
  21097. FROM (feature
  21098. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21099. WHERE ((((cvterm.name)::text = 'maternally_imprinted'::text) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'imprinted'::text));
  21100. --
  21101. -- Name: improved_high_quality_draft; Type: VIEW; Schema: so; Owner: -
  21102. --
  21103. CREATE VIEW improved_high_quality_draft AS
  21104. SELECT feature.feature_id AS improved_high_quality_draft_id,
  21105. feature.feature_id,
  21106. feature.dbxref_id,
  21107. feature.organism_id,
  21108. feature.name,
  21109. feature.uniquename,
  21110. feature.residues,
  21111. feature.seqlen,
  21112. feature.md5checksum,
  21113. feature.type_id,
  21114. feature.is_analysis,
  21115. feature.is_obsolete,
  21116. feature.timeaccessioned,
  21117. feature.timelastmodified
  21118. FROM (feature
  21119. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21120. WHERE ((cvterm.name)::text = 'improved_high_quality_draft'::text);
  21121. --
  21122. -- Name: inactive_catalytic_site; Type: VIEW; Schema: so; Owner: -
  21123. --
  21124. CREATE VIEW inactive_catalytic_site AS
  21125. SELECT feature.feature_id AS inactive_catalytic_site_id,
  21126. feature.feature_id,
  21127. feature.dbxref_id,
  21128. feature.organism_id,
  21129. feature.name,
  21130. feature.uniquename,
  21131. feature.residues,
  21132. feature.seqlen,
  21133. feature.md5checksum,
  21134. feature.type_id,
  21135. feature.is_analysis,
  21136. feature.is_obsolete,
  21137. feature.timeaccessioned,
  21138. feature.timelastmodified
  21139. FROM (feature
  21140. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21141. WHERE ((cvterm.name)::text = 'inactive_catalytic_site'::text);
  21142. --
  21143. -- Name: inactive_ligand_binding_site; Type: VIEW; Schema: so; Owner: -
  21144. --
  21145. CREATE VIEW inactive_ligand_binding_site AS
  21146. SELECT feature.feature_id AS inactive_ligand_binding_site_id,
  21147. feature.feature_id,
  21148. feature.dbxref_id,
  21149. feature.organism_id,
  21150. feature.name,
  21151. feature.uniquename,
  21152. feature.residues,
  21153. feature.seqlen,
  21154. feature.md5checksum,
  21155. feature.type_id,
  21156. feature.is_analysis,
  21157. feature.is_obsolete,
  21158. feature.timeaccessioned,
  21159. feature.timelastmodified
  21160. FROM (feature
  21161. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21162. WHERE (((cvterm.name)::text = 'inactive_catalytic_site'::text) OR ((cvterm.name)::text = 'inactive_ligand_binding_site'::text));
  21163. --
  21164. -- Name: incomplete_terminal_codon_variant; Type: VIEW; Schema: so; Owner: -
  21165. --
  21166. CREATE VIEW incomplete_terminal_codon_variant AS
  21167. SELECT feature.feature_id AS incomplete_terminal_codon_variant_id,
  21168. feature.feature_id,
  21169. feature.dbxref_id,
  21170. feature.organism_id,
  21171. feature.name,
  21172. feature.uniquename,
  21173. feature.residues,
  21174. feature.seqlen,
  21175. feature.md5checksum,
  21176. feature.type_id,
  21177. feature.is_analysis,
  21178. feature.is_obsolete,
  21179. feature.timeaccessioned,
  21180. feature.timelastmodified
  21181. FROM (feature
  21182. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21183. WHERE ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text);
  21184. --
  21185. -- Name: increased_polyadenylation_variant; Type: VIEW; Schema: so; Owner: -
  21186. --
  21187. CREATE VIEW increased_polyadenylation_variant AS
  21188. SELECT feature.feature_id AS increased_polyadenylation_variant_id,
  21189. feature.feature_id,
  21190. feature.dbxref_id,
  21191. feature.organism_id,
  21192. feature.name,
  21193. feature.uniquename,
  21194. feature.residues,
  21195. feature.seqlen,
  21196. feature.md5checksum,
  21197. feature.type_id,
  21198. feature.is_analysis,
  21199. feature.is_obsolete,
  21200. feature.timeaccessioned,
  21201. feature.timelastmodified
  21202. FROM (feature
  21203. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21204. WHERE ((cvterm.name)::text = 'increased_polyadenylation_variant'::text);
  21205. --
  21206. -- Name: increased_transcript_level_variant; Type: VIEW; Schema: so; Owner: -
  21207. --
  21208. CREATE VIEW increased_transcript_level_variant AS
  21209. SELECT feature.feature_id AS increased_transcript_level_variant_id,
  21210. feature.feature_id,
  21211. feature.dbxref_id,
  21212. feature.organism_id,
  21213. feature.name,
  21214. feature.uniquename,
  21215. feature.residues,
  21216. feature.seqlen,
  21217. feature.md5checksum,
  21218. feature.type_id,
  21219. feature.is_analysis,
  21220. feature.is_obsolete,
  21221. feature.timeaccessioned,
  21222. feature.timelastmodified
  21223. FROM (feature
  21224. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21225. WHERE ((cvterm.name)::text = 'increased_transcript_level_variant'::text);
  21226. --
  21227. -- Name: increased_transcript_stability_variant; Type: VIEW; Schema: so; Owner: -
  21228. --
  21229. CREATE VIEW increased_transcript_stability_variant AS
  21230. SELECT feature.feature_id AS increased_transcript_stability_variant_id,
  21231. feature.feature_id,
  21232. feature.dbxref_id,
  21233. feature.organism_id,
  21234. feature.name,
  21235. feature.uniquename,
  21236. feature.residues,
  21237. feature.seqlen,
  21238. feature.md5checksum,
  21239. feature.type_id,
  21240. feature.is_analysis,
  21241. feature.is_obsolete,
  21242. feature.timeaccessioned,
  21243. feature.timelastmodified
  21244. FROM (feature
  21245. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21246. WHERE ((cvterm.name)::text = 'increased_transcript_stability_variant'::text);
  21247. --
  21248. -- Name: increased_transcription_rate_variant; Type: VIEW; Schema: so; Owner: -
  21249. --
  21250. CREATE VIEW increased_transcription_rate_variant AS
  21251. SELECT feature.feature_id AS increased_transcription_rate_variant_id,
  21252. feature.feature_id,
  21253. feature.dbxref_id,
  21254. feature.organism_id,
  21255. feature.name,
  21256. feature.uniquename,
  21257. feature.residues,
  21258. feature.seqlen,
  21259. feature.md5checksum,
  21260. feature.type_id,
  21261. feature.is_analysis,
  21262. feature.is_obsolete,
  21263. feature.timeaccessioned,
  21264. feature.timelastmodified
  21265. FROM (feature
  21266. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21267. WHERE ((cvterm.name)::text = 'increased_transcription_rate_variant'::text);
  21268. --
  21269. -- Name: increased_translational_product_level; Type: VIEW; Schema: so; Owner: -
  21270. --
  21271. CREATE VIEW increased_translational_product_level AS
  21272. SELECT feature.feature_id AS increased_translational_product_level_id,
  21273. feature.feature_id,
  21274. feature.dbxref_id,
  21275. feature.organism_id,
  21276. feature.name,
  21277. feature.uniquename,
  21278. feature.residues,
  21279. feature.seqlen,
  21280. feature.md5checksum,
  21281. feature.type_id,
  21282. feature.is_analysis,
  21283. feature.is_obsolete,
  21284. feature.timeaccessioned,
  21285. feature.timelastmodified
  21286. FROM (feature
  21287. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21288. WHERE ((cvterm.name)::text = 'increased_translational_product_level'::text);
  21289. --
  21290. -- Name: indel; Type: VIEW; Schema: so; Owner: -
  21291. --
  21292. CREATE VIEW indel AS
  21293. SELECT feature.feature_id AS indel_id,
  21294. feature.feature_id,
  21295. feature.dbxref_id,
  21296. feature.organism_id,
  21297. feature.name,
  21298. feature.uniquename,
  21299. feature.residues,
  21300. feature.seqlen,
  21301. feature.md5checksum,
  21302. feature.type_id,
  21303. feature.is_analysis,
  21304. feature.is_obsolete,
  21305. feature.timeaccessioned,
  21306. feature.timelastmodified
  21307. FROM (feature
  21308. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21309. WHERE ((cvterm.name)::text = 'indel'::text);
  21310. --
  21311. -- Name: independently_known; Type: VIEW; Schema: so; Owner: -
  21312. --
  21313. CREATE VIEW independently_known AS
  21314. SELECT feature.feature_id AS independently_known_id,
  21315. feature.feature_id,
  21316. feature.dbxref_id,
  21317. feature.organism_id,
  21318. feature.name,
  21319. feature.uniquename,
  21320. feature.residues,
  21321. feature.seqlen,
  21322. feature.md5checksum,
  21323. feature.type_id,
  21324. feature.is_analysis,
  21325. feature.is_obsolete,
  21326. feature.timeaccessioned,
  21327. feature.timelastmodified
  21328. FROM (feature
  21329. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21330. WHERE ((cvterm.name)::text = 'independently_known'::text);
  21331. --
  21332. -- Name: inframe_codon_gain; Type: VIEW; Schema: so; Owner: -
  21333. --
  21334. CREATE VIEW inframe_codon_gain AS
  21335. SELECT feature.feature_id AS inframe_codon_gain_id,
  21336. feature.feature_id,
  21337. feature.dbxref_id,
  21338. feature.organism_id,
  21339. feature.name,
  21340. feature.uniquename,
  21341. feature.residues,
  21342. feature.seqlen,
  21343. feature.md5checksum,
  21344. feature.type_id,
  21345. feature.is_analysis,
  21346. feature.is_obsolete,
  21347. feature.timeaccessioned,
  21348. feature.timelastmodified
  21349. FROM (feature
  21350. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21351. WHERE ((cvterm.name)::text = 'inframe_codon_gain'::text);
  21352. --
  21353. -- Name: inframe_codon_loss; Type: VIEW; Schema: so; Owner: -
  21354. --
  21355. CREATE VIEW inframe_codon_loss AS
  21356. SELECT feature.feature_id AS inframe_codon_loss_id,
  21357. feature.feature_id,
  21358. feature.dbxref_id,
  21359. feature.organism_id,
  21360. feature.name,
  21361. feature.uniquename,
  21362. feature.residues,
  21363. feature.seqlen,
  21364. feature.md5checksum,
  21365. feature.type_id,
  21366. feature.is_analysis,
  21367. feature.is_obsolete,
  21368. feature.timeaccessioned,
  21369. feature.timelastmodified
  21370. FROM (feature
  21371. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21372. WHERE ((cvterm.name)::text = 'inframe_codon_loss'::text);
  21373. --
  21374. -- Name: inframe_variant; Type: VIEW; Schema: so; Owner: -
  21375. --
  21376. CREATE VIEW inframe_variant AS
  21377. SELECT feature.feature_id AS inframe_variant_id,
  21378. feature.feature_id,
  21379. feature.dbxref_id,
  21380. feature.organism_id,
  21381. feature.name,
  21382. feature.uniquename,
  21383. feature.residues,
  21384. feature.seqlen,
  21385. feature.md5checksum,
  21386. feature.type_id,
  21387. feature.is_analysis,
  21388. feature.is_obsolete,
  21389. feature.timeaccessioned,
  21390. feature.timelastmodified
  21391. FROM (feature
  21392. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21393. WHERE ((((cvterm.name)::text = 'inframe_codon_gain'::text) OR ((cvterm.name)::text = 'inframe_codon_loss'::text)) OR ((cvterm.name)::text = 'inframe_variant'::text));
  21394. --
  21395. -- Name: initiator_codon_change; Type: VIEW; Schema: so; Owner: -
  21396. --
  21397. CREATE VIEW initiator_codon_change AS
  21398. SELECT feature.feature_id AS initiator_codon_change_id,
  21399. feature.feature_id,
  21400. feature.dbxref_id,
  21401. feature.organism_id,
  21402. feature.name,
  21403. feature.uniquename,
  21404. feature.residues,
  21405. feature.seqlen,
  21406. feature.md5checksum,
  21407. feature.type_id,
  21408. feature.is_analysis,
  21409. feature.is_obsolete,
  21410. feature.timeaccessioned,
  21411. feature.timelastmodified
  21412. FROM (feature
  21413. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21414. WHERE ((cvterm.name)::text = 'initiator_codon_change'::text);
  21415. --
  21416. -- Name: inosine; Type: VIEW; Schema: so; Owner: -
  21417. --
  21418. CREATE VIEW inosine AS
  21419. SELECT feature.feature_id AS inosine_id,
  21420. feature.feature_id,
  21421. feature.dbxref_id,
  21422. feature.organism_id,
  21423. feature.name,
  21424. feature.uniquename,
  21425. feature.residues,
  21426. feature.seqlen,
  21427. feature.md5checksum,
  21428. feature.type_id,
  21429. feature.is_analysis,
  21430. feature.is_obsolete,
  21431. feature.timeaccessioned,
  21432. feature.timelastmodified
  21433. FROM (feature
  21434. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21435. WHERE (((((((cvterm.name)::text = 'modified_inosine'::text) OR ((cvterm.name)::text = 'methylinosine'::text)) OR ((cvterm.name)::text = 'one_methylinosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylinosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylinosine'::text)) OR ((cvterm.name)::text = 'inosine'::text));
  21436. --
  21437. -- Name: inr1_motif; Type: VIEW; Schema: so; Owner: -
  21438. --
  21439. CREATE VIEW inr1_motif AS
  21440. SELECT feature.feature_id AS inr1_motif_id,
  21441. feature.feature_id,
  21442. feature.dbxref_id,
  21443. feature.organism_id,
  21444. feature.name,
  21445. feature.uniquename,
  21446. feature.residues,
  21447. feature.seqlen,
  21448. feature.md5checksum,
  21449. feature.type_id,
  21450. feature.is_analysis,
  21451. feature.is_obsolete,
  21452. feature.timeaccessioned,
  21453. feature.timelastmodified
  21454. FROM (feature
  21455. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21456. WHERE ((cvterm.name)::text = 'INR1_motif'::text);
  21457. --
  21458. -- Name: inr_motif; Type: VIEW; Schema: so; Owner: -
  21459. --
  21460. CREATE VIEW inr_motif AS
  21461. SELECT feature.feature_id AS inr_motif_id,
  21462. feature.feature_id,
  21463. feature.dbxref_id,
  21464. feature.organism_id,
  21465. feature.name,
  21466. feature.uniquename,
  21467. feature.residues,
  21468. feature.seqlen,
  21469. feature.md5checksum,
  21470. feature.type_id,
  21471. feature.is_analysis,
  21472. feature.is_obsolete,
  21473. feature.timeaccessioned,
  21474. feature.timelastmodified
  21475. FROM (feature
  21476. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21477. WHERE ((cvterm.name)::text = 'INR_motif'::text);
  21478. --
  21479. -- Name: insertion; Type: VIEW; Schema: so; Owner: -
  21480. --
  21481. CREATE VIEW insertion AS
  21482. SELECT feature.feature_id AS insertion_id,
  21483. feature.feature_id,
  21484. feature.dbxref_id,
  21485. feature.organism_id,
  21486. feature.name,
  21487. feature.uniquename,
  21488. feature.residues,
  21489. feature.seqlen,
  21490. feature.md5checksum,
  21491. feature.type_id,
  21492. feature.is_analysis,
  21493. feature.is_obsolete,
  21494. feature.timeaccessioned,
  21495. feature.timelastmodified
  21496. FROM (feature
  21497. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21498. WHERE (((((((cvterm.name)::text = 'transgenic_insertion'::text) OR ((cvterm.name)::text = 'duplication'::text)) OR ((cvterm.name)::text = 'tandem_duplication'::text)) OR ((cvterm.name)::text = 'direct_tandem_duplication'::text)) OR ((cvterm.name)::text = 'inverted_tandem_duplication'::text)) OR ((cvterm.name)::text = 'insertion'::text));
  21499. --
  21500. -- Name: insertion_attribute; Type: VIEW; Schema: so; Owner: -
  21501. --
  21502. CREATE VIEW insertion_attribute AS
  21503. SELECT feature.feature_id AS insertion_attribute_id,
  21504. feature.feature_id,
  21505. feature.dbxref_id,
  21506. feature.organism_id,
  21507. feature.name,
  21508. feature.uniquename,
  21509. feature.residues,
  21510. feature.seqlen,
  21511. feature.md5checksum,
  21512. feature.type_id,
  21513. feature.is_analysis,
  21514. feature.is_obsolete,
  21515. feature.timeaccessioned,
  21516. feature.timelastmodified
  21517. FROM (feature
  21518. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21519. WHERE (((((cvterm.name)::text = 'tandem'::text) OR ((cvterm.name)::text = 'direct'::text)) OR ((cvterm.name)::text = 'inverted'::text)) OR ((cvterm.name)::text = 'insertion_attribute'::text));
  21520. --
  21521. -- Name: insertion_breakpoint; Type: VIEW; Schema: so; Owner: -
  21522. --
  21523. CREATE VIEW insertion_breakpoint AS
  21524. SELECT feature.feature_id AS insertion_breakpoint_id,
  21525. feature.feature_id,
  21526. feature.dbxref_id,
  21527. feature.organism_id,
  21528. feature.name,
  21529. feature.uniquename,
  21530. feature.residues,
  21531. feature.seqlen,
  21532. feature.md5checksum,
  21533. feature.type_id,
  21534. feature.is_analysis,
  21535. feature.is_obsolete,
  21536. feature.timeaccessioned,
  21537. feature.timelastmodified
  21538. FROM (feature
  21539. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21540. WHERE ((cvterm.name)::text = 'insertion_breakpoint'::text);
  21541. --
  21542. -- Name: insertion_sequence; Type: VIEW; Schema: so; Owner: -
  21543. --
  21544. CREATE VIEW insertion_sequence AS
  21545. SELECT feature.feature_id AS insertion_sequence_id,
  21546. feature.feature_id,
  21547. feature.dbxref_id,
  21548. feature.organism_id,
  21549. feature.name,
  21550. feature.uniquename,
  21551. feature.residues,
  21552. feature.seqlen,
  21553. feature.md5checksum,
  21554. feature.type_id,
  21555. feature.is_analysis,
  21556. feature.is_obsolete,
  21557. feature.timeaccessioned,
  21558. feature.timelastmodified
  21559. FROM (feature
  21560. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21561. WHERE ((cvterm.name)::text = 'insertion_sequence'::text);
  21562. --
  21563. -- Name: insertion_site; Type: VIEW; Schema: so; Owner: -
  21564. --
  21565. CREATE VIEW insertion_site AS
  21566. SELECT feature.feature_id AS insertion_site_id,
  21567. feature.feature_id,
  21568. feature.dbxref_id,
  21569. feature.organism_id,
  21570. feature.name,
  21571. feature.uniquename,
  21572. feature.residues,
  21573. feature.seqlen,
  21574. feature.md5checksum,
  21575. feature.type_id,
  21576. feature.is_analysis,
  21577. feature.is_obsolete,
  21578. feature.timeaccessioned,
  21579. feature.timelastmodified
  21580. FROM (feature
  21581. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21582. WHERE (((cvterm.name)::text = 'transposable_element_insertion_site'::text) OR ((cvterm.name)::text = 'insertion_site'::text));
  21583. --
  21584. -- Name: insertional; Type: VIEW; Schema: so; Owner: -
  21585. --
  21586. CREATE VIEW insertional AS
  21587. SELECT feature.feature_id AS insertional_id,
  21588. feature.feature_id,
  21589. feature.dbxref_id,
  21590. feature.organism_id,
  21591. feature.name,
  21592. feature.uniquename,
  21593. feature.residues,
  21594. feature.seqlen,
  21595. feature.md5checksum,
  21596. feature.type_id,
  21597. feature.is_analysis,
  21598. feature.is_obsolete,
  21599. feature.timeaccessioned,
  21600. feature.timelastmodified
  21601. FROM (feature
  21602. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21603. WHERE ((cvterm.name)::text = 'insertional'::text);
  21604. --
  21605. -- Name: insertional_duplication; Type: VIEW; Schema: so; Owner: -
  21606. --
  21607. CREATE VIEW insertional_duplication AS
  21608. SELECT feature.feature_id AS insertional_duplication_id,
  21609. feature.feature_id,
  21610. feature.dbxref_id,
  21611. feature.organism_id,
  21612. feature.name,
  21613. feature.uniquename,
  21614. feature.residues,
  21615. feature.seqlen,
  21616. feature.md5checksum,
  21617. feature.type_id,
  21618. feature.is_analysis,
  21619. feature.is_obsolete,
  21620. feature.timeaccessioned,
  21621. feature.timelastmodified
  21622. FROM (feature
  21623. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21624. WHERE (((((cvterm.name)::text = 'uninverted_insertional_duplication'::text) OR ((cvterm.name)::text = 'inverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'unoriented_insertional_duplication'::text)) OR ((cvterm.name)::text = 'insertional_duplication'::text));
  21625. --
  21626. -- Name: inside_intron; Type: VIEW; Schema: so; Owner: -
  21627. --
  21628. CREATE VIEW inside_intron AS
  21629. SELECT feature.feature_id AS inside_intron_id,
  21630. feature.feature_id,
  21631. feature.dbxref_id,
  21632. feature.organism_id,
  21633. feature.name,
  21634. feature.uniquename,
  21635. feature.residues,
  21636. feature.seqlen,
  21637. feature.md5checksum,
  21638. feature.type_id,
  21639. feature.is_analysis,
  21640. feature.is_obsolete,
  21641. feature.timeaccessioned,
  21642. feature.timelastmodified
  21643. FROM (feature
  21644. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21645. WHERE ((((cvterm.name)::text = 'inside_intron_antiparallel'::text) OR ((cvterm.name)::text = 'inside_intron_parallel'::text)) OR ((cvterm.name)::text = 'inside_intron'::text));
  21646. --
  21647. -- Name: inside_intron_antiparallel; Type: VIEW; Schema: so; Owner: -
  21648. --
  21649. CREATE VIEW inside_intron_antiparallel AS
  21650. SELECT feature.feature_id AS inside_intron_antiparallel_id,
  21651. feature.feature_id,
  21652. feature.dbxref_id,
  21653. feature.organism_id,
  21654. feature.name,
  21655. feature.uniquename,
  21656. feature.residues,
  21657. feature.seqlen,
  21658. feature.md5checksum,
  21659. feature.type_id,
  21660. feature.is_analysis,
  21661. feature.is_obsolete,
  21662. feature.timeaccessioned,
  21663. feature.timelastmodified
  21664. FROM (feature
  21665. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21666. WHERE ((cvterm.name)::text = 'inside_intron_antiparallel'::text);
  21667. --
  21668. -- Name: inside_intron_parallel; Type: VIEW; Schema: so; Owner: -
  21669. --
  21670. CREATE VIEW inside_intron_parallel AS
  21671. SELECT feature.feature_id AS inside_intron_parallel_id,
  21672. feature.feature_id,
  21673. feature.dbxref_id,
  21674. feature.organism_id,
  21675. feature.name,
  21676. feature.uniquename,
  21677. feature.residues,
  21678. feature.seqlen,
  21679. feature.md5checksum,
  21680. feature.type_id,
  21681. feature.is_analysis,
  21682. feature.is_obsolete,
  21683. feature.timeaccessioned,
  21684. feature.timelastmodified
  21685. FROM (feature
  21686. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21687. WHERE ((cvterm.name)::text = 'inside_intron_parallel'::text);
  21688. --
  21689. -- Name: insulator; Type: VIEW; Schema: so; Owner: -
  21690. --
  21691. CREATE VIEW insulator AS
  21692. SELECT feature.feature_id AS insulator_id,
  21693. feature.feature_id,
  21694. feature.dbxref_id,
  21695. feature.organism_id,
  21696. feature.name,
  21697. feature.uniquename,
  21698. feature.residues,
  21699. feature.seqlen,
  21700. feature.md5checksum,
  21701. feature.type_id,
  21702. feature.is_analysis,
  21703. feature.is_obsolete,
  21704. feature.timeaccessioned,
  21705. feature.timelastmodified
  21706. FROM (feature
  21707. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21708. WHERE ((cvterm.name)::text = 'insulator'::text);
  21709. --
  21710. -- Name: insulator_binding_site; Type: VIEW; Schema: so; Owner: -
  21711. --
  21712. CREATE VIEW insulator_binding_site AS
  21713. SELECT feature.feature_id AS insulator_binding_site_id,
  21714. feature.feature_id,
  21715. feature.dbxref_id,
  21716. feature.organism_id,
  21717. feature.name,
  21718. feature.uniquename,
  21719. feature.residues,
  21720. feature.seqlen,
  21721. feature.md5checksum,
  21722. feature.type_id,
  21723. feature.is_analysis,
  21724. feature.is_obsolete,
  21725. feature.timeaccessioned,
  21726. feature.timelastmodified
  21727. FROM (feature
  21728. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21729. WHERE ((cvterm.name)::text = 'insulator_binding_site'::text);
  21730. --
  21731. -- Name: integrated_mobile_genetic_element; Type: VIEW; Schema: so; Owner: -
  21732. --
  21733. CREATE VIEW integrated_mobile_genetic_element AS
  21734. SELECT feature.feature_id AS integrated_mobile_genetic_element_id,
  21735. feature.feature_id,
  21736. feature.dbxref_id,
  21737. feature.organism_id,
  21738. feature.name,
  21739. feature.uniquename,
  21740. feature.residues,
  21741. feature.seqlen,
  21742. feature.md5checksum,
  21743. feature.type_id,
  21744. feature.is_analysis,
  21745. feature.is_obsolete,
  21746. feature.timeaccessioned,
  21747. feature.timelastmodified
  21748. FROM (feature
  21749. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21750. WHERE ((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'transposable_element'::text) OR ((cvterm.name)::text = 'proviral_region'::text)) OR ((cvterm.name)::text = 'integron'::text)) OR ((cvterm.name)::text = 'genomic_island'::text)) OR ((cvterm.name)::text = 'integrated_plasmid'::text)) OR ((cvterm.name)::text = 'cointegrated_plasmid'::text)) OR ((cvterm.name)::text = 'retrotransposon'::text)) OR ((cvterm.name)::text = 'DNA_transposon'::text)) OR ((cvterm.name)::text = 'foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'transgenic_transposable_element'::text)) OR ((cvterm.name)::text = 'natural_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'nested_transposon'::text)) OR ((cvterm.name)::text = 'LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'LINE_element'::text)) OR ((cvterm.name)::text = 'SINE_element'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat_element'::text)) OR ((cvterm.name)::text = 'foldback_element'::text)) OR ((cvterm.name)::text = 'conjugative_transposon'::text)) OR ((cvterm.name)::text = 'helitron'::text)) OR ((cvterm.name)::text = 'p_element'::text)) OR ((cvterm.name)::text = 'MITE'::text)) OR ((cvterm.name)::text = 'insertion_sequence'::text)) OR ((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'prophage'::text)) OR ((cvterm.name)::text = 'pathogenic_island'::text)) OR ((cvterm.name)::text = 'metabolic_island'::text)) OR ((cvterm.name)::text = 'adaptive_island'::text)) OR ((cvterm.name)::text = 'symbiosis_island'::text)) OR ((cvterm.name)::text = 'cryptic_prophage'::text)) OR ((cvterm.name)::text = 'defective_conjugative_transposon'::text)) OR ((cvterm.name)::text = 'integrated_mobile_genetic_element'::text));
  21751. --
  21752. -- Name: integrated_plasmid; Type: VIEW; Schema: so; Owner: -
  21753. --
  21754. CREATE VIEW integrated_plasmid AS
  21755. SELECT feature.feature_id AS integrated_plasmid_id,
  21756. feature.feature_id,
  21757. feature.dbxref_id,
  21758. feature.organism_id,
  21759. feature.name,
  21760. feature.uniquename,
  21761. feature.residues,
  21762. feature.seqlen,
  21763. feature.md5checksum,
  21764. feature.type_id,
  21765. feature.is_analysis,
  21766. feature.is_obsolete,
  21767. feature.timeaccessioned,
  21768. feature.timelastmodified
  21769. FROM (feature
  21770. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21771. WHERE ((cvterm.name)::text = 'integrated_plasmid'::text);
  21772. --
  21773. -- Name: integration_excision_site; Type: VIEW; Schema: so; Owner: -
  21774. --
  21775. CREATE VIEW integration_excision_site AS
  21776. SELECT feature.feature_id AS integration_excision_site_id,
  21777. feature.feature_id,
  21778. feature.dbxref_id,
  21779. feature.organism_id,
  21780. feature.name,
  21781. feature.uniquename,
  21782. feature.residues,
  21783. feature.seqlen,
  21784. feature.md5checksum,
  21785. feature.type_id,
  21786. feature.is_analysis,
  21787. feature.is_obsolete,
  21788. feature.timeaccessioned,
  21789. feature.timelastmodified
  21790. FROM (feature
  21791. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21792. WHERE (((((((((cvterm.name)::text = 'attI_site'::text) OR ((cvterm.name)::text = 'attP_site'::text)) OR ((cvterm.name)::text = 'attB_site'::text)) OR ((cvterm.name)::text = 'attL_site'::text)) OR ((cvterm.name)::text = 'attR_site'::text)) OR ((cvterm.name)::text = 'attC_site'::text)) OR ((cvterm.name)::text = 'attCtn_site'::text)) OR ((cvterm.name)::text = 'integration_excision_site'::text));
  21793. --
  21794. -- Name: integron; Type: VIEW; Schema: so; Owner: -
  21795. --
  21796. CREATE VIEW integron AS
  21797. SELECT feature.feature_id AS integron_id,
  21798. feature.feature_id,
  21799. feature.dbxref_id,
  21800. feature.organism_id,
  21801. feature.name,
  21802. feature.uniquename,
  21803. feature.residues,
  21804. feature.seqlen,
  21805. feature.md5checksum,
  21806. feature.type_id,
  21807. feature.is_analysis,
  21808. feature.is_obsolete,
  21809. feature.timeaccessioned,
  21810. feature.timelastmodified
  21811. FROM (feature
  21812. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21813. WHERE ((cvterm.name)::text = 'integron'::text);
  21814. --
  21815. -- Name: intein; Type: VIEW; Schema: so; Owner: -
  21816. --
  21817. CREATE VIEW intein AS
  21818. SELECT feature.feature_id AS intein_id,
  21819. feature.feature_id,
  21820. feature.dbxref_id,
  21821. feature.organism_id,
  21822. feature.name,
  21823. feature.uniquename,
  21824. feature.residues,
  21825. feature.seqlen,
  21826. feature.md5checksum,
  21827. feature.type_id,
  21828. feature.is_analysis,
  21829. feature.is_obsolete,
  21830. feature.timeaccessioned,
  21831. feature.timelastmodified
  21832. FROM (feature
  21833. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21834. WHERE ((cvterm.name)::text = 'intein'::text);
  21835. --
  21836. -- Name: intein_containing; Type: VIEW; Schema: so; Owner: -
  21837. --
  21838. CREATE VIEW intein_containing AS
  21839. SELECT feature.feature_id AS intein_containing_id,
  21840. feature.feature_id,
  21841. feature.dbxref_id,
  21842. feature.organism_id,
  21843. feature.name,
  21844. feature.uniquename,
  21845. feature.residues,
  21846. feature.seqlen,
  21847. feature.md5checksum,
  21848. feature.type_id,
  21849. feature.is_analysis,
  21850. feature.is_obsolete,
  21851. feature.timeaccessioned,
  21852. feature.timelastmodified
  21853. FROM (feature
  21854. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21855. WHERE ((cvterm.name)::text = 'intein_containing'::text);
  21856. --
  21857. -- Name: interband; Type: VIEW; Schema: so; Owner: -
  21858. --
  21859. CREATE VIEW interband AS
  21860. SELECT feature.feature_id AS interband_id,
  21861. feature.feature_id,
  21862. feature.dbxref_id,
  21863. feature.organism_id,
  21864. feature.name,
  21865. feature.uniquename,
  21866. feature.residues,
  21867. feature.seqlen,
  21868. feature.md5checksum,
  21869. feature.type_id,
  21870. feature.is_analysis,
  21871. feature.is_obsolete,
  21872. feature.timeaccessioned,
  21873. feature.timelastmodified
  21874. FROM (feature
  21875. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21876. WHERE ((cvterm.name)::text = 'interband'::text);
  21877. --
  21878. -- Name: interchromosomal; Type: VIEW; Schema: so; Owner: -
  21879. --
  21880. CREATE VIEW interchromosomal AS
  21881. SELECT feature.feature_id AS interchromosomal_id,
  21882. feature.feature_id,
  21883. feature.dbxref_id,
  21884. feature.organism_id,
  21885. feature.name,
  21886. feature.uniquename,
  21887. feature.residues,
  21888. feature.seqlen,
  21889. feature.md5checksum,
  21890. feature.type_id,
  21891. feature.is_analysis,
  21892. feature.is_obsolete,
  21893. feature.timeaccessioned,
  21894. feature.timelastmodified
  21895. FROM (feature
  21896. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21897. WHERE ((cvterm.name)::text = 'interchromosomal'::text);
  21898. --
  21899. -- Name: interchromosomal_duplication; Type: VIEW; Schema: so; Owner: -
  21900. --
  21901. CREATE VIEW interchromosomal_duplication AS
  21902. SELECT feature.feature_id AS interchromosomal_duplication_id,
  21903. feature.feature_id,
  21904. feature.dbxref_id,
  21905. feature.organism_id,
  21906. feature.name,
  21907. feature.uniquename,
  21908. feature.residues,
  21909. feature.seqlen,
  21910. feature.md5checksum,
  21911. feature.type_id,
  21912. feature.is_analysis,
  21913. feature.is_obsolete,
  21914. feature.timeaccessioned,
  21915. feature.timelastmodified
  21916. FROM (feature
  21917. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21918. WHERE ((cvterm.name)::text = 'interchromosomal_duplication'::text);
  21919. --
  21920. -- Name: interchromosomal_mutation; Type: VIEW; Schema: so; Owner: -
  21921. --
  21922. CREATE VIEW interchromosomal_mutation AS
  21923. SELECT feature.feature_id AS interchromosomal_mutation_id,
  21924. feature.feature_id,
  21925. feature.dbxref_id,
  21926. feature.organism_id,
  21927. feature.name,
  21928. feature.uniquename,
  21929. feature.residues,
  21930. feature.seqlen,
  21931. feature.md5checksum,
  21932. feature.type_id,
  21933. feature.is_analysis,
  21934. feature.is_obsolete,
  21935. feature.timeaccessioned,
  21936. feature.timelastmodified
  21937. FROM (feature
  21938. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21939. WHERE ((((((((((((((((cvterm.name)::text = 'chromosomal_translocation'::text) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'translocation_element'::text)) OR ((cvterm.name)::text = 'Robertsonian_fusion'::text)) OR ((cvterm.name)::text = 'reciprocal_chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'cyclic_translocation'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_mutation'::text));
  21940. --
  21941. -- Name: interchromosomal_transposition; Type: VIEW; Schema: so; Owner: -
  21942. --
  21943. CREATE VIEW interchromosomal_transposition AS
  21944. SELECT feature.feature_id AS interchromosomal_transposition_id,
  21945. feature.feature_id,
  21946. feature.dbxref_id,
  21947. feature.organism_id,
  21948. feature.name,
  21949. feature.uniquename,
  21950. feature.residues,
  21951. feature.seqlen,
  21952. feature.md5checksum,
  21953. feature.type_id,
  21954. feature.is_analysis,
  21955. feature.is_obsolete,
  21956. feature.timeaccessioned,
  21957. feature.timelastmodified
  21958. FROM (feature
  21959. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21960. WHERE ((((((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text));
  21961. --
  21962. -- Name: intergenic_region; Type: VIEW; Schema: so; Owner: -
  21963. --
  21964. CREATE VIEW intergenic_region AS
  21965. SELECT feature.feature_id AS intergenic_region_id,
  21966. feature.feature_id,
  21967. feature.dbxref_id,
  21968. feature.organism_id,
  21969. feature.name,
  21970. feature.uniquename,
  21971. feature.residues,
  21972. feature.seqlen,
  21973. feature.md5checksum,
  21974. feature.type_id,
  21975. feature.is_analysis,
  21976. feature.is_obsolete,
  21977. feature.timeaccessioned,
  21978. feature.timelastmodified
  21979. FROM (feature
  21980. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  21981. WHERE ((cvterm.name)::text = 'intergenic_region'::text);
  21982. --
  21983. -- Name: intergenic_variant; Type: VIEW; Schema: so; Owner: -
  21984. --
  21985. CREATE VIEW intergenic_variant AS
  21986. SELECT feature.feature_id AS intergenic_variant_id,
  21987. feature.feature_id,
  21988. feature.dbxref_id,
  21989. feature.organism_id,
  21990. feature.name,
  21991. feature.uniquename,
  21992. feature.residues,
  21993. feature.seqlen,
  21994. feature.md5checksum,
  21995. feature.type_id,
  21996. feature.is_analysis,
  21997. feature.is_obsolete,
  21998. feature.timeaccessioned,
  21999. feature.timelastmodified
  22000. FROM (feature
  22001. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22002. WHERE ((cvterm.name)::text = 'intergenic_variant'::text);
  22003. --
  22004. -- Name: interior_coding_exon; Type: VIEW; Schema: so; Owner: -
  22005. --
  22006. CREATE VIEW interior_coding_exon AS
  22007. SELECT feature.feature_id AS interior_coding_exon_id,
  22008. feature.feature_id,
  22009. feature.dbxref_id,
  22010. feature.organism_id,
  22011. feature.name,
  22012. feature.uniquename,
  22013. feature.residues,
  22014. feature.seqlen,
  22015. feature.md5checksum,
  22016. feature.type_id,
  22017. feature.is_analysis,
  22018. feature.is_obsolete,
  22019. feature.timeaccessioned,
  22020. feature.timelastmodified
  22021. FROM (feature
  22022. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22023. WHERE ((cvterm.name)::text = 'interior_coding_exon'::text);
  22024. --
  22025. -- Name: interior_exon; Type: VIEW; Schema: so; Owner: -
  22026. --
  22027. CREATE VIEW interior_exon AS
  22028. SELECT feature.feature_id AS interior_exon_id,
  22029. feature.feature_id,
  22030. feature.dbxref_id,
  22031. feature.organism_id,
  22032. feature.name,
  22033. feature.uniquename,
  22034. feature.residues,
  22035. feature.seqlen,
  22036. feature.md5checksum,
  22037. feature.type_id,
  22038. feature.is_analysis,
  22039. feature.is_obsolete,
  22040. feature.timeaccessioned,
  22041. feature.timelastmodified
  22042. FROM (feature
  22043. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22044. WHERE ((cvterm.name)::text = 'interior_exon'::text);
  22045. --
  22046. -- Name: interior_intron; Type: VIEW; Schema: so; Owner: -
  22047. --
  22048. CREATE VIEW interior_intron AS
  22049. SELECT feature.feature_id AS interior_intron_id,
  22050. feature.feature_id,
  22051. feature.dbxref_id,
  22052. feature.organism_id,
  22053. feature.name,
  22054. feature.uniquename,
  22055. feature.residues,
  22056. feature.seqlen,
  22057. feature.md5checksum,
  22058. feature.type_id,
  22059. feature.is_analysis,
  22060. feature.is_obsolete,
  22061. feature.timeaccessioned,
  22062. feature.timelastmodified
  22063. FROM (feature
  22064. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22065. WHERE ((cvterm.name)::text = 'interior_intron'::text);
  22066. --
  22067. -- Name: intermediate; Type: VIEW; Schema: so; Owner: -
  22068. --
  22069. CREATE VIEW intermediate AS
  22070. SELECT feature.feature_id AS intermediate_id,
  22071. feature.feature_id,
  22072. feature.dbxref_id,
  22073. feature.organism_id,
  22074. feature.name,
  22075. feature.uniquename,
  22076. feature.residues,
  22077. feature.seqlen,
  22078. feature.md5checksum,
  22079. feature.type_id,
  22080. feature.is_analysis,
  22081. feature.is_obsolete,
  22082. feature.timeaccessioned,
  22083. feature.timelastmodified
  22084. FROM (feature
  22085. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22086. WHERE ((cvterm.name)::text = 'intermediate'::text);
  22087. --
  22088. -- Name: intermediate_element; Type: VIEW; Schema: so; Owner: -
  22089. --
  22090. CREATE VIEW intermediate_element AS
  22091. SELECT feature.feature_id AS intermediate_element_id,
  22092. feature.feature_id,
  22093. feature.dbxref_id,
  22094. feature.organism_id,
  22095. feature.name,
  22096. feature.uniquename,
  22097. feature.residues,
  22098. feature.seqlen,
  22099. feature.md5checksum,
  22100. feature.type_id,
  22101. feature.is_analysis,
  22102. feature.is_obsolete,
  22103. feature.timeaccessioned,
  22104. feature.timelastmodified
  22105. FROM (feature
  22106. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22107. WHERE ((cvterm.name)::text = 'intermediate_element'::text);
  22108. --
  22109. -- Name: internal_eliminated_sequence; Type: VIEW; Schema: so; Owner: -
  22110. --
  22111. CREATE VIEW internal_eliminated_sequence AS
  22112. SELECT feature.feature_id AS internal_eliminated_sequence_id,
  22113. feature.feature_id,
  22114. feature.dbxref_id,
  22115. feature.organism_id,
  22116. feature.name,
  22117. feature.uniquename,
  22118. feature.residues,
  22119. feature.seqlen,
  22120. feature.md5checksum,
  22121. feature.type_id,
  22122. feature.is_analysis,
  22123. feature.is_obsolete,
  22124. feature.timeaccessioned,
  22125. feature.timelastmodified
  22126. FROM (feature
  22127. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22128. WHERE ((cvterm.name)::text = 'internal_eliminated_sequence'::text);
  22129. --
  22130. -- Name: internal_guide_sequence; Type: VIEW; Schema: so; Owner: -
  22131. --
  22132. CREATE VIEW internal_guide_sequence AS
  22133. SELECT feature.feature_id AS internal_guide_sequence_id,
  22134. feature.feature_id,
  22135. feature.dbxref_id,
  22136. feature.organism_id,
  22137. feature.name,
  22138. feature.uniquename,
  22139. feature.residues,
  22140. feature.seqlen,
  22141. feature.md5checksum,
  22142. feature.type_id,
  22143. feature.is_analysis,
  22144. feature.is_obsolete,
  22145. feature.timeaccessioned,
  22146. feature.timelastmodified
  22147. FROM (feature
  22148. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22149. WHERE ((cvterm.name)::text = 'internal_guide_sequence'::text);
  22150. --
  22151. -- Name: internal_ribosome_entry_site; Type: VIEW; Schema: so; Owner: -
  22152. --
  22153. CREATE VIEW internal_ribosome_entry_site AS
  22154. SELECT feature.feature_id AS internal_ribosome_entry_site_id,
  22155. feature.feature_id,
  22156. feature.dbxref_id,
  22157. feature.organism_id,
  22158. feature.name,
  22159. feature.uniquename,
  22160. feature.residues,
  22161. feature.seqlen,
  22162. feature.md5checksum,
  22163. feature.type_id,
  22164. feature.is_analysis,
  22165. feature.is_obsolete,
  22166. feature.timeaccessioned,
  22167. feature.timelastmodified
  22168. FROM (feature
  22169. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22170. WHERE (((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text) OR ((cvterm.name)::text = 'internal_ribosome_entry_site'::text));
  22171. --
  22172. -- Name: internal_shine_dalgarno_sequence; Type: VIEW; Schema: so; Owner: -
  22173. --
  22174. CREATE VIEW internal_shine_dalgarno_sequence AS
  22175. SELECT feature.feature_id AS internal_shine_dalgarno_sequence_id,
  22176. feature.feature_id,
  22177. feature.dbxref_id,
  22178. feature.organism_id,
  22179. feature.name,
  22180. feature.uniquename,
  22181. feature.residues,
  22182. feature.seqlen,
  22183. feature.md5checksum,
  22184. feature.type_id,
  22185. feature.is_analysis,
  22186. feature.is_obsolete,
  22187. feature.timeaccessioned,
  22188. feature.timelastmodified
  22189. FROM (feature
  22190. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22191. WHERE ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text);
  22192. --
  22193. -- Name: internal_transcribed_spacer_region; Type: VIEW; Schema: so; Owner: -
  22194. --
  22195. CREATE VIEW internal_transcribed_spacer_region AS
  22196. SELECT feature.feature_id AS internal_transcribed_spacer_region_id,
  22197. feature.feature_id,
  22198. feature.dbxref_id,
  22199. feature.organism_id,
  22200. feature.name,
  22201. feature.uniquename,
  22202. feature.residues,
  22203. feature.seqlen,
  22204. feature.md5checksum,
  22205. feature.type_id,
  22206. feature.is_analysis,
  22207. feature.is_obsolete,
  22208. feature.timeaccessioned,
  22209. feature.timelastmodified
  22210. FROM (feature
  22211. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22212. WHERE ((cvterm.name)::text = 'internal_transcribed_spacer_region'::text);
  22213. --
  22214. -- Name: internal_utr; Type: VIEW; Schema: so; Owner: -
  22215. --
  22216. CREATE VIEW internal_utr AS
  22217. SELECT feature.feature_id AS internal_utr_id,
  22218. feature.feature_id,
  22219. feature.dbxref_id,
  22220. feature.organism_id,
  22221. feature.name,
  22222. feature.uniquename,
  22223. feature.residues,
  22224. feature.seqlen,
  22225. feature.md5checksum,
  22226. feature.type_id,
  22227. feature.is_analysis,
  22228. feature.is_obsolete,
  22229. feature.timeaccessioned,
  22230. feature.timelastmodified
  22231. FROM (feature
  22232. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22233. WHERE ((cvterm.name)::text = 'internal_UTR'::text);
  22234. --
  22235. -- Name: intrachromosomal; Type: VIEW; Schema: so; Owner: -
  22236. --
  22237. CREATE VIEW intrachromosomal AS
  22238. SELECT feature.feature_id AS intrachromosomal_id,
  22239. feature.feature_id,
  22240. feature.dbxref_id,
  22241. feature.organism_id,
  22242. feature.name,
  22243. feature.uniquename,
  22244. feature.residues,
  22245. feature.seqlen,
  22246. feature.md5checksum,
  22247. feature.type_id,
  22248. feature.is_analysis,
  22249. feature.is_obsolete,
  22250. feature.timeaccessioned,
  22251. feature.timelastmodified
  22252. FROM (feature
  22253. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22254. WHERE ((cvterm.name)::text = 'intrachromosomal'::text);
  22255. --
  22256. -- Name: intrachromosomal_duplication; Type: VIEW; Schema: so; Owner: -
  22257. --
  22258. CREATE VIEW intrachromosomal_duplication AS
  22259. SELECT feature.feature_id AS intrachromosomal_duplication_id,
  22260. feature.feature_id,
  22261. feature.dbxref_id,
  22262. feature.organism_id,
  22263. feature.name,
  22264. feature.uniquename,
  22265. feature.residues,
  22266. feature.seqlen,
  22267. feature.md5checksum,
  22268. feature.type_id,
  22269. feature.is_analysis,
  22270. feature.is_obsolete,
  22271. feature.timeaccessioned,
  22272. feature.timelastmodified
  22273. FROM (feature
  22274. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22275. WHERE (((((((((((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text));
  22276. --
  22277. -- Name: intrachromosomal_mutation; Type: VIEW; Schema: so; Owner: -
  22278. --
  22279. CREATE VIEW intrachromosomal_mutation AS
  22280. SELECT feature.feature_id AS intrachromosomal_mutation_id,
  22281. feature.feature_id,
  22282. feature.dbxref_id,
  22283. feature.organism_id,
  22284. feature.name,
  22285. feature.uniquename,
  22286. feature.residues,
  22287. feature.seqlen,
  22288. feature.md5checksum,
  22289. feature.type_id,
  22290. feature.is_analysis,
  22291. feature.is_obsolete,
  22292. feature.timeaccessioned,
  22293. feature.timelastmodified
  22294. FROM (feature
  22295. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22296. WHERE ((((((((((((((((((((((((((((((((cvterm.name)::text = 'chromosomal_deletion'::text) OR ((cvterm.name)::text = 'chromosomal_inversion'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'ring_chromosome'::text)) OR ((cvterm.name)::text = 'chromosome_fission'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_deficiency'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'pericentric_inversion'::text)) OR ((cvterm.name)::text = 'paracentric_inversion'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'intrachromosomal_mutation'::text));
  22297. --
  22298. -- Name: intrachromosomal_transposition; Type: VIEW; Schema: so; Owner: -
  22299. --
  22300. CREATE VIEW intrachromosomal_transposition AS
  22301. SELECT feature.feature_id AS intrachromosomal_transposition_id,
  22302. feature.feature_id,
  22303. feature.dbxref_id,
  22304. feature.organism_id,
  22305. feature.name,
  22306. feature.uniquename,
  22307. feature.residues,
  22308. feature.seqlen,
  22309. feature.md5checksum,
  22310. feature.type_id,
  22311. feature.is_analysis,
  22312. feature.is_obsolete,
  22313. feature.timeaccessioned,
  22314. feature.timelastmodified
  22315. FROM (feature
  22316. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22317. WHERE ((((((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text));
  22318. --
  22319. -- Name: intramembrane_polypeptide_region; Type: VIEW; Schema: so; Owner: -
  22320. --
  22321. CREATE VIEW intramembrane_polypeptide_region AS
  22322. SELECT feature.feature_id AS intramembrane_polypeptide_region_id,
  22323. feature.feature_id,
  22324. feature.dbxref_id,
  22325. feature.organism_id,
  22326. feature.name,
  22327. feature.uniquename,
  22328. feature.residues,
  22329. feature.seqlen,
  22330. feature.md5checksum,
  22331. feature.type_id,
  22332. feature.is_analysis,
  22333. feature.is_obsolete,
  22334. feature.timeaccessioned,
  22335. feature.timelastmodified
  22336. FROM (feature
  22337. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22338. WHERE ((((cvterm.name)::text = 'membrane_peptide_loop'::text) OR ((cvterm.name)::text = 'transmembrane_polypeptide_region'::text)) OR ((cvterm.name)::text = 'intramembrane_polypeptide_region'::text));
  22339. --
  22340. -- Name: intrinsically_unstructured_polypeptide_region; Type: VIEW; Schema: so; Owner: -
  22341. --
  22342. CREATE VIEW intrinsically_unstructured_polypeptide_region AS
  22343. SELECT feature.feature_id AS intrinsically_unstructured_polypeptide_region_id,
  22344. feature.feature_id,
  22345. feature.dbxref_id,
  22346. feature.organism_id,
  22347. feature.name,
  22348. feature.uniquename,
  22349. feature.residues,
  22350. feature.seqlen,
  22351. feature.md5checksum,
  22352. feature.type_id,
  22353. feature.is_analysis,
  22354. feature.is_obsolete,
  22355. feature.timeaccessioned,
  22356. feature.timelastmodified
  22357. FROM (feature
  22358. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22359. WHERE ((cvterm.name)::text = 'intrinsically_unstructured_polypeptide_region'::text);
  22360. --
  22361. -- Name: introgressed_chromosome_region; Type: VIEW; Schema: so; Owner: -
  22362. --
  22363. CREATE VIEW introgressed_chromosome_region AS
  22364. SELECT feature.feature_id AS introgressed_chromosome_region_id,
  22365. feature.feature_id,
  22366. feature.dbxref_id,
  22367. feature.organism_id,
  22368. feature.name,
  22369. feature.uniquename,
  22370. feature.residues,
  22371. feature.seqlen,
  22372. feature.md5checksum,
  22373. feature.type_id,
  22374. feature.is_analysis,
  22375. feature.is_obsolete,
  22376. feature.timeaccessioned,
  22377. feature.timelastmodified
  22378. FROM (feature
  22379. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22380. WHERE ((cvterm.name)::text = 'introgressed_chromosome_region'::text);
  22381. --
  22382. -- Name: intron; Type: VIEW; Schema: so; Owner: -
  22383. --
  22384. CREATE VIEW intron AS
  22385. SELECT feature.feature_id AS intron_id,
  22386. feature.feature_id,
  22387. feature.dbxref_id,
  22388. feature.organism_id,
  22389. feature.name,
  22390. feature.uniquename,
  22391. feature.residues,
  22392. feature.seqlen,
  22393. feature.md5checksum,
  22394. feature.type_id,
  22395. feature.is_analysis,
  22396. feature.is_obsolete,
  22397. feature.timeaccessioned,
  22398. feature.timelastmodified
  22399. FROM (feature
  22400. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22401. WHERE ((((((((((((((((((((((cvterm.name)::text = 'five_prime_intron'::text) OR ((cvterm.name)::text = 'interior_intron'::text)) OR ((cvterm.name)::text = 'three_prime_intron'::text)) OR ((cvterm.name)::text = 'twintron'::text)) OR ((cvterm.name)::text = 'UTR_intron'::text)) OR ((cvterm.name)::text = 'autocatalytically_spliced_intron'::text)) OR ((cvterm.name)::text = 'spliceosomal_intron'::text)) OR ((cvterm.name)::text = 'mobile_intron'::text)) OR ((cvterm.name)::text = 'endonuclease_spliced_intron'::text)) OR ((cvterm.name)::text = 'five_prime_UTR_intron'::text)) OR ((cvterm.name)::text = 'three_prime_UTR_intron'::text)) OR ((cvterm.name)::text = 'group_I_intron'::text)) OR ((cvterm.name)::text = 'group_II_intron'::text)) OR ((cvterm.name)::text = 'group_III_intron'::text)) OR ((cvterm.name)::text = 'group_IIA_intron'::text)) OR ((cvterm.name)::text = 'group_IIB_intron'::text)) OR ((cvterm.name)::text = 'U2_intron'::text)) OR ((cvterm.name)::text = 'U12_intron'::text)) OR ((cvterm.name)::text = 'archaeal_intron'::text)) OR ((cvterm.name)::text = 'tRNA_intron'::text)) OR ((cvterm.name)::text = 'intron'::text));
  22402. --
  22403. -- Name: intron_domain; Type: VIEW; Schema: so; Owner: -
  22404. --
  22405. CREATE VIEW intron_domain AS
  22406. SELECT feature.feature_id AS intron_domain_id,
  22407. feature.feature_id,
  22408. feature.dbxref_id,
  22409. feature.organism_id,
  22410. feature.name,
  22411. feature.uniquename,
  22412. feature.residues,
  22413. feature.seqlen,
  22414. feature.md5checksum,
  22415. feature.type_id,
  22416. feature.is_analysis,
  22417. feature.is_obsolete,
  22418. feature.timeaccessioned,
  22419. feature.timelastmodified
  22420. FROM (feature
  22421. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22422. WHERE ((((cvterm.name)::text = 'internal_guide_sequence'::text) OR ((cvterm.name)::text = 'mirtron'::text)) OR ((cvterm.name)::text = 'intron_domain'::text));
  22423. --
  22424. -- Name: intron_gain; Type: VIEW; Schema: so; Owner: -
  22425. --
  22426. CREATE VIEW intron_gain AS
  22427. SELECT feature.feature_id AS intron_gain_id,
  22428. feature.feature_id,
  22429. feature.dbxref_id,
  22430. feature.organism_id,
  22431. feature.name,
  22432. feature.uniquename,
  22433. feature.residues,
  22434. feature.seqlen,
  22435. feature.md5checksum,
  22436. feature.type_id,
  22437. feature.is_analysis,
  22438. feature.is_obsolete,
  22439. feature.timeaccessioned,
  22440. feature.timelastmodified
  22441. FROM (feature
  22442. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22443. WHERE ((cvterm.name)::text = 'intron_gain'::text);
  22444. --
  22445. -- Name: intron_variant; Type: VIEW; Schema: so; Owner: -
  22446. --
  22447. CREATE VIEW intron_variant AS
  22448. SELECT feature.feature_id AS intron_variant_id,
  22449. feature.feature_id,
  22450. feature.dbxref_id,
  22451. feature.organism_id,
  22452. feature.name,
  22453. feature.uniquename,
  22454. feature.residues,
  22455. feature.seqlen,
  22456. feature.md5checksum,
  22457. feature.type_id,
  22458. feature.is_analysis,
  22459. feature.is_obsolete,
  22460. feature.timeaccessioned,
  22461. feature.timelastmodified
  22462. FROM (feature
  22463. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22464. WHERE ((((((cvterm.name)::text = 'splice_site_variant'::text) OR ((cvterm.name)::text = 'splice_acceptor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_5th_base_variant'::text)) OR ((cvterm.name)::text = 'intron_variant'::text));
  22465. --
  22466. -- Name: intronic_regulatory_region; Type: VIEW; Schema: so; Owner: -
  22467. --
  22468. CREATE VIEW intronic_regulatory_region AS
  22469. SELECT feature.feature_id AS intronic_regulatory_region_id,
  22470. feature.feature_id,
  22471. feature.dbxref_id,
  22472. feature.organism_id,
  22473. feature.name,
  22474. feature.uniquename,
  22475. feature.residues,
  22476. feature.seqlen,
  22477. feature.md5checksum,
  22478. feature.type_id,
  22479. feature.is_analysis,
  22480. feature.is_obsolete,
  22481. feature.timeaccessioned,
  22482. feature.timelastmodified
  22483. FROM (feature
  22484. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22485. WHERE ((cvterm.name)::text = 'intronic_regulatory_region'::text);
  22486. --
  22487. -- Name: intronic_splice_enhancer; Type: VIEW; Schema: so; Owner: -
  22488. --
  22489. CREATE VIEW intronic_splice_enhancer AS
  22490. SELECT feature.feature_id AS intronic_splice_enhancer_id,
  22491. feature.feature_id,
  22492. feature.dbxref_id,
  22493. feature.organism_id,
  22494. feature.name,
  22495. feature.uniquename,
  22496. feature.residues,
  22497. feature.seqlen,
  22498. feature.md5checksum,
  22499. feature.type_id,
  22500. feature.is_analysis,
  22501. feature.is_obsolete,
  22502. feature.timeaccessioned,
  22503. feature.timelastmodified
  22504. FROM (feature
  22505. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22506. WHERE ((cvterm.name)::text = 'intronic_splice_enhancer'::text);
  22507. --
  22508. -- Name: invalidated; Type: VIEW; Schema: so; Owner: -
  22509. --
  22510. CREATE VIEW invalidated AS
  22511. SELECT feature.feature_id AS invalidated_id,
  22512. feature.feature_id,
  22513. feature.dbxref_id,
  22514. feature.organism_id,
  22515. feature.name,
  22516. feature.uniquename,
  22517. feature.residues,
  22518. feature.seqlen,
  22519. feature.md5checksum,
  22520. feature.type_id,
  22521. feature.is_analysis,
  22522. feature.is_obsolete,
  22523. feature.timeaccessioned,
  22524. feature.timelastmodified
  22525. FROM (feature
  22526. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22527. WHERE ((((((cvterm.name)::text = 'invalidated_by_chimeric_cDNA'::text) OR ((cvterm.name)::text = 'invalidated_by_genomic_contamination'::text)) OR ((cvterm.name)::text = 'invalidated_by_genomic_polyA_primed_cDNA'::text)) OR ((cvterm.name)::text = 'invalidated_by_partial_processing'::text)) OR ((cvterm.name)::text = 'invalidated'::text));
  22528. --
  22529. -- Name: invalidated_by_chimeric_cdna; Type: VIEW; Schema: so; Owner: -
  22530. --
  22531. CREATE VIEW invalidated_by_chimeric_cdna AS
  22532. SELECT feature.feature_id AS invalidated_by_chimeric_cdna_id,
  22533. feature.feature_id,
  22534. feature.dbxref_id,
  22535. feature.organism_id,
  22536. feature.name,
  22537. feature.uniquename,
  22538. feature.residues,
  22539. feature.seqlen,
  22540. feature.md5checksum,
  22541. feature.type_id,
  22542. feature.is_analysis,
  22543. feature.is_obsolete,
  22544. feature.timeaccessioned,
  22545. feature.timelastmodified
  22546. FROM (feature
  22547. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22548. WHERE ((cvterm.name)::text = 'invalidated_by_chimeric_cDNA'::text);
  22549. --
  22550. -- Name: invalidated_by_genomic_contamination; Type: VIEW; Schema: so; Owner: -
  22551. --
  22552. CREATE VIEW invalidated_by_genomic_contamination AS
  22553. SELECT feature.feature_id AS invalidated_by_genomic_contamination_id,
  22554. feature.feature_id,
  22555. feature.dbxref_id,
  22556. feature.organism_id,
  22557. feature.name,
  22558. feature.uniquename,
  22559. feature.residues,
  22560. feature.seqlen,
  22561. feature.md5checksum,
  22562. feature.type_id,
  22563. feature.is_analysis,
  22564. feature.is_obsolete,
  22565. feature.timeaccessioned,
  22566. feature.timelastmodified
  22567. FROM (feature
  22568. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22569. WHERE ((cvterm.name)::text = 'invalidated_by_genomic_contamination'::text);
  22570. --
  22571. -- Name: invalidated_by_genomic_polya_primed_cdna; Type: VIEW; Schema: so; Owner: -
  22572. --
  22573. CREATE VIEW invalidated_by_genomic_polya_primed_cdna AS
  22574. SELECT feature.feature_id AS invalidated_by_genomic_polya_primed_cdna_id,
  22575. feature.feature_id,
  22576. feature.dbxref_id,
  22577. feature.organism_id,
  22578. feature.name,
  22579. feature.uniquename,
  22580. feature.residues,
  22581. feature.seqlen,
  22582. feature.md5checksum,
  22583. feature.type_id,
  22584. feature.is_analysis,
  22585. feature.is_obsolete,
  22586. feature.timeaccessioned,
  22587. feature.timelastmodified
  22588. FROM (feature
  22589. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22590. WHERE ((cvterm.name)::text = 'invalidated_by_genomic_polyA_primed_cDNA'::text);
  22591. --
  22592. -- Name: invalidated_by_partial_processing; Type: VIEW; Schema: so; Owner: -
  22593. --
  22594. CREATE VIEW invalidated_by_partial_processing AS
  22595. SELECT feature.feature_id AS invalidated_by_partial_processing_id,
  22596. feature.feature_id,
  22597. feature.dbxref_id,
  22598. feature.organism_id,
  22599. feature.name,
  22600. feature.uniquename,
  22601. feature.residues,
  22602. feature.seqlen,
  22603. feature.md5checksum,
  22604. feature.type_id,
  22605. feature.is_analysis,
  22606. feature.is_obsolete,
  22607. feature.timeaccessioned,
  22608. feature.timelastmodified
  22609. FROM (feature
  22610. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22611. WHERE ((cvterm.name)::text = 'invalidated_by_partial_processing'::text);
  22612. --
  22613. -- Name: invalidated_cdna_clone; Type: VIEW; Schema: so; Owner: -
  22614. --
  22615. CREATE VIEW invalidated_cdna_clone AS
  22616. SELECT feature.feature_id AS invalidated_cdna_clone_id,
  22617. feature.feature_id,
  22618. feature.dbxref_id,
  22619. feature.organism_id,
  22620. feature.name,
  22621. feature.uniquename,
  22622. feature.residues,
  22623. feature.seqlen,
  22624. feature.md5checksum,
  22625. feature.type_id,
  22626. feature.is_analysis,
  22627. feature.is_obsolete,
  22628. feature.timeaccessioned,
  22629. feature.timelastmodified
  22630. FROM (feature
  22631. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22632. WHERE ((((((cvterm.name)::text = 'chimeric_cDNA_clone'::text) OR ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'invalidated_cDNA_clone'::text));
  22633. --
  22634. -- Name: inversion; Type: VIEW; Schema: so; Owner: -
  22635. --
  22636. CREATE VIEW inversion AS
  22637. SELECT feature.feature_id AS inversion_id,
  22638. feature.feature_id,
  22639. feature.dbxref_id,
  22640. feature.organism_id,
  22641. feature.name,
  22642. feature.uniquename,
  22643. feature.residues,
  22644. feature.seqlen,
  22645. feature.md5checksum,
  22646. feature.type_id,
  22647. feature.is_analysis,
  22648. feature.is_obsolete,
  22649. feature.timeaccessioned,
  22650. feature.timelastmodified
  22651. FROM (feature
  22652. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22653. WHERE ((cvterm.name)::text = 'inversion'::text);
  22654. --
  22655. -- Name: inversion_attribute; Type: VIEW; Schema: so; Owner: -
  22656. --
  22657. CREATE VIEW inversion_attribute AS
  22658. SELECT feature.feature_id AS inversion_attribute_id,
  22659. feature.feature_id,
  22660. feature.dbxref_id,
  22661. feature.organism_id,
  22662. feature.name,
  22663. feature.uniquename,
  22664. feature.residues,
  22665. feature.seqlen,
  22666. feature.md5checksum,
  22667. feature.type_id,
  22668. feature.is_analysis,
  22669. feature.is_obsolete,
  22670. feature.timeaccessioned,
  22671. feature.timelastmodified
  22672. FROM (feature
  22673. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22674. WHERE ((((cvterm.name)::text = 'pericentric'::text) OR ((cvterm.name)::text = 'paracentric'::text)) OR ((cvterm.name)::text = 'inversion_attribute'::text));
  22675. --
  22676. -- Name: inversion_breakpoint; Type: VIEW; Schema: so; Owner: -
  22677. --
  22678. CREATE VIEW inversion_breakpoint AS
  22679. SELECT feature.feature_id AS inversion_breakpoint_id,
  22680. feature.feature_id,
  22681. feature.dbxref_id,
  22682. feature.organism_id,
  22683. feature.name,
  22684. feature.uniquename,
  22685. feature.residues,
  22686. feature.seqlen,
  22687. feature.md5checksum,
  22688. feature.type_id,
  22689. feature.is_analysis,
  22690. feature.is_obsolete,
  22691. feature.timeaccessioned,
  22692. feature.timelastmodified
  22693. FROM (feature
  22694. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22695. WHERE ((cvterm.name)::text = 'inversion_breakpoint'::text);
  22696. --
  22697. -- Name: inversion_cum_translocation; Type: VIEW; Schema: so; Owner: -
  22698. --
  22699. CREATE VIEW inversion_cum_translocation AS
  22700. SELECT feature.feature_id AS inversion_cum_translocation_id,
  22701. feature.feature_id,
  22702. feature.dbxref_id,
  22703. feature.organism_id,
  22704. feature.name,
  22705. feature.uniquename,
  22706. feature.residues,
  22707. feature.seqlen,
  22708. feature.md5checksum,
  22709. feature.type_id,
  22710. feature.is_analysis,
  22711. feature.is_obsolete,
  22712. feature.timeaccessioned,
  22713. feature.timelastmodified
  22714. FROM (feature
  22715. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22716. WHERE (((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text));
  22717. --
  22718. -- Name: inversion_derived_aneuploid_chromosome; Type: VIEW; Schema: so; Owner: -
  22719. --
  22720. CREATE VIEW inversion_derived_aneuploid_chromosome AS
  22721. SELECT feature.feature_id AS inversion_derived_aneuploid_chromosome_id,
  22722. feature.feature_id,
  22723. feature.dbxref_id,
  22724. feature.organism_id,
  22725. feature.name,
  22726. feature.uniquename,
  22727. feature.residues,
  22728. feature.seqlen,
  22729. feature.md5checksum,
  22730. feature.type_id,
  22731. feature.is_analysis,
  22732. feature.is_obsolete,
  22733. feature.timeaccessioned,
  22734. feature.timelastmodified
  22735. FROM (feature
  22736. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22737. WHERE ((cvterm.name)::text = 'inversion_derived_aneuploid_chromosome'::text);
  22738. --
  22739. -- Name: inversion_derived_bipartite_deficiency; Type: VIEW; Schema: so; Owner: -
  22740. --
  22741. CREATE VIEW inversion_derived_bipartite_deficiency AS
  22742. SELECT feature.feature_id AS inversion_derived_bipartite_deficiency_id,
  22743. feature.feature_id,
  22744. feature.dbxref_id,
  22745. feature.organism_id,
  22746. feature.name,
  22747. feature.uniquename,
  22748. feature.residues,
  22749. feature.seqlen,
  22750. feature.md5checksum,
  22751. feature.type_id,
  22752. feature.is_analysis,
  22753. feature.is_obsolete,
  22754. feature.timeaccessioned,
  22755. feature.timelastmodified
  22756. FROM (feature
  22757. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22758. WHERE ((cvterm.name)::text = 'inversion_derived_bipartite_deficiency'::text);
  22759. --
  22760. -- Name: inversion_derived_bipartite_duplication; Type: VIEW; Schema: so; Owner: -
  22761. --
  22762. CREATE VIEW inversion_derived_bipartite_duplication AS
  22763. SELECT feature.feature_id AS inversion_derived_bipartite_duplication_id,
  22764. feature.feature_id,
  22765. feature.dbxref_id,
  22766. feature.organism_id,
  22767. feature.name,
  22768. feature.uniquename,
  22769. feature.residues,
  22770. feature.seqlen,
  22771. feature.md5checksum,
  22772. feature.type_id,
  22773. feature.is_analysis,
  22774. feature.is_obsolete,
  22775. feature.timeaccessioned,
  22776. feature.timelastmodified
  22777. FROM (feature
  22778. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22779. WHERE ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text);
  22780. --
  22781. -- Name: inversion_derived_deficiency_plus_aneuploid; Type: VIEW; Schema: so; Owner: -
  22782. --
  22783. CREATE VIEW inversion_derived_deficiency_plus_aneuploid AS
  22784. SELECT feature.feature_id AS inversion_derived_deficiency_plus_aneuploid_id,
  22785. feature.feature_id,
  22786. feature.dbxref_id,
  22787. feature.organism_id,
  22788. feature.name,
  22789. feature.uniquename,
  22790. feature.residues,
  22791. feature.seqlen,
  22792. feature.md5checksum,
  22793. feature.type_id,
  22794. feature.is_analysis,
  22795. feature.is_obsolete,
  22796. feature.timeaccessioned,
  22797. feature.timelastmodified
  22798. FROM (feature
  22799. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22800. WHERE ((cvterm.name)::text = 'inversion_derived_deficiency_plus_aneuploid'::text);
  22801. --
  22802. -- Name: inversion_derived_deficiency_plus_duplication; Type: VIEW; Schema: so; Owner: -
  22803. --
  22804. CREATE VIEW inversion_derived_deficiency_plus_duplication AS
  22805. SELECT feature.feature_id AS inversion_derived_deficiency_plus_duplication_id,
  22806. feature.feature_id,
  22807. feature.dbxref_id,
  22808. feature.organism_id,
  22809. feature.name,
  22810. feature.uniquename,
  22811. feature.residues,
  22812. feature.seqlen,
  22813. feature.md5checksum,
  22814. feature.type_id,
  22815. feature.is_analysis,
  22816. feature.is_obsolete,
  22817. feature.timeaccessioned,
  22818. feature.timelastmodified
  22819. FROM (feature
  22820. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22821. WHERE ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text);
  22822. --
  22823. -- Name: inversion_derived_duplication_plus_aneuploid; Type: VIEW; Schema: so; Owner: -
  22824. --
  22825. CREATE VIEW inversion_derived_duplication_plus_aneuploid AS
  22826. SELECT feature.feature_id AS inversion_derived_duplication_plus_aneuploid_id,
  22827. feature.feature_id,
  22828. feature.dbxref_id,
  22829. feature.organism_id,
  22830. feature.name,
  22831. feature.uniquename,
  22832. feature.residues,
  22833. feature.seqlen,
  22834. feature.md5checksum,
  22835. feature.type_id,
  22836. feature.is_analysis,
  22837. feature.is_obsolete,
  22838. feature.timeaccessioned,
  22839. feature.timelastmodified
  22840. FROM (feature
  22841. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22842. WHERE ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text);
  22843. --
  22844. -- Name: inversion_site; Type: VIEW; Schema: so; Owner: -
  22845. --
  22846. CREATE VIEW inversion_site AS
  22847. SELECT feature.feature_id AS inversion_site_id,
  22848. feature.feature_id,
  22849. feature.dbxref_id,
  22850. feature.organism_id,
  22851. feature.name,
  22852. feature.uniquename,
  22853. feature.residues,
  22854. feature.seqlen,
  22855. feature.md5checksum,
  22856. feature.type_id,
  22857. feature.is_analysis,
  22858. feature.is_obsolete,
  22859. feature.timeaccessioned,
  22860. feature.timelastmodified
  22861. FROM (feature
  22862. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22863. WHERE (((cvterm.name)::text = 'FRT_site'::text) OR ((cvterm.name)::text = 'inversion_site'::text));
  22864. --
  22865. -- Name: inversion_site_part; Type: VIEW; Schema: so; Owner: -
  22866. --
  22867. CREATE VIEW inversion_site_part AS
  22868. SELECT feature.feature_id AS inversion_site_part_id,
  22869. feature.feature_id,
  22870. feature.dbxref_id,
  22871. feature.organism_id,
  22872. feature.name,
  22873. feature.uniquename,
  22874. feature.residues,
  22875. feature.seqlen,
  22876. feature.md5checksum,
  22877. feature.type_id,
  22878. feature.is_analysis,
  22879. feature.is_obsolete,
  22880. feature.timeaccessioned,
  22881. feature.timelastmodified
  22882. FROM (feature
  22883. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22884. WHERE ((((cvterm.name)::text = 'IRLinv_site'::text) OR ((cvterm.name)::text = 'IRRinv_site'::text)) OR ((cvterm.name)::text = 'inversion_site_part'::text));
  22885. --
  22886. -- Name: invert_inter_transposition; Type: VIEW; Schema: so; Owner: -
  22887. --
  22888. CREATE VIEW invert_inter_transposition AS
  22889. SELECT feature.feature_id AS invert_inter_transposition_id,
  22890. feature.feature_id,
  22891. feature.dbxref_id,
  22892. feature.organism_id,
  22893. feature.name,
  22894. feature.uniquename,
  22895. feature.residues,
  22896. feature.seqlen,
  22897. feature.md5checksum,
  22898. feature.type_id,
  22899. feature.is_analysis,
  22900. feature.is_obsolete,
  22901. feature.timeaccessioned,
  22902. feature.timelastmodified
  22903. FROM (feature
  22904. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22905. WHERE ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text);
  22906. --
  22907. -- Name: invert_intra_transposition; Type: VIEW; Schema: so; Owner: -
  22908. --
  22909. CREATE VIEW invert_intra_transposition AS
  22910. SELECT feature.feature_id AS invert_intra_transposition_id,
  22911. feature.feature_id,
  22912. feature.dbxref_id,
  22913. feature.organism_id,
  22914. feature.name,
  22915. feature.uniquename,
  22916. feature.residues,
  22917. feature.seqlen,
  22918. feature.md5checksum,
  22919. feature.type_id,
  22920. feature.is_analysis,
  22921. feature.is_obsolete,
  22922. feature.timeaccessioned,
  22923. feature.timelastmodified
  22924. FROM (feature
  22925. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22926. WHERE ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text);
  22927. --
  22928. -- Name: inverted; Type: VIEW; Schema: so; Owner: -
  22929. --
  22930. CREATE VIEW inverted AS
  22931. SELECT feature.feature_id AS inverted_id,
  22932. feature.feature_id,
  22933. feature.dbxref_id,
  22934. feature.organism_id,
  22935. feature.name,
  22936. feature.uniquename,
  22937. feature.residues,
  22938. feature.seqlen,
  22939. feature.md5checksum,
  22940. feature.type_id,
  22941. feature.is_analysis,
  22942. feature.is_obsolete,
  22943. feature.timeaccessioned,
  22944. feature.timelastmodified
  22945. FROM (feature
  22946. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22947. WHERE ((cvterm.name)::text = 'inverted'::text);
  22948. --
  22949. -- Name: inverted_insertional_duplication; Type: VIEW; Schema: so; Owner: -
  22950. --
  22951. CREATE VIEW inverted_insertional_duplication AS
  22952. SELECT feature.feature_id AS inverted_insertional_duplication_id,
  22953. feature.feature_id,
  22954. feature.dbxref_id,
  22955. feature.organism_id,
  22956. feature.name,
  22957. feature.uniquename,
  22958. feature.residues,
  22959. feature.seqlen,
  22960. feature.md5checksum,
  22961. feature.type_id,
  22962. feature.is_analysis,
  22963. feature.is_obsolete,
  22964. feature.timeaccessioned,
  22965. feature.timelastmodified
  22966. FROM (feature
  22967. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22968. WHERE ((cvterm.name)::text = 'inverted_insertional_duplication'::text);
  22969. --
  22970. -- Name: inverted_repeat; Type: VIEW; Schema: so; Owner: -
  22971. --
  22972. CREATE VIEW inverted_repeat AS
  22973. SELECT feature.feature_id AS inverted_repeat_id,
  22974. feature.feature_id,
  22975. feature.dbxref_id,
  22976. feature.organism_id,
  22977. feature.name,
  22978. feature.uniquename,
  22979. feature.residues,
  22980. feature.seqlen,
  22981. feature.md5checksum,
  22982. feature.type_id,
  22983. feature.is_analysis,
  22984. feature.is_obsolete,
  22985. feature.timeaccessioned,
  22986. feature.timelastmodified
  22987. FROM (feature
  22988. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  22989. WHERE (((((cvterm.name)::text = 'terminal_inverted_repeat'::text) OR ((cvterm.name)::text = 'five_prime_terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'three_prime_terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'inverted_repeat'::text));
  22990. --
  22991. -- Name: inverted_ring_chromosome; Type: VIEW; Schema: so; Owner: -
  22992. --
  22993. CREATE VIEW inverted_ring_chromosome AS
  22994. SELECT feature.feature_id AS inverted_ring_chromosome_id,
  22995. feature.feature_id,
  22996. feature.dbxref_id,
  22997. feature.organism_id,
  22998. feature.name,
  22999. feature.uniquename,
  23000. feature.residues,
  23001. feature.seqlen,
  23002. feature.md5checksum,
  23003. feature.type_id,
  23004. feature.is_analysis,
  23005. feature.is_obsolete,
  23006. feature.timeaccessioned,
  23007. feature.timelastmodified
  23008. FROM (feature
  23009. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23010. WHERE ((cvterm.name)::text = 'inverted_ring_chromosome'::text);
  23011. --
  23012. -- Name: inverted_tandem_duplication; Type: VIEW; Schema: so; Owner: -
  23013. --
  23014. CREATE VIEW inverted_tandem_duplication AS
  23015. SELECT feature.feature_id AS inverted_tandem_duplication_id,
  23016. feature.feature_id,
  23017. feature.dbxref_id,
  23018. feature.organism_id,
  23019. feature.name,
  23020. feature.uniquename,
  23021. feature.residues,
  23022. feature.seqlen,
  23023. feature.md5checksum,
  23024. feature.type_id,
  23025. feature.is_analysis,
  23026. feature.is_obsolete,
  23027. feature.timeaccessioned,
  23028. feature.timelastmodified
  23029. FROM (feature
  23030. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23031. WHERE ((cvterm.name)::text = 'inverted_tandem_duplication'::text);
  23032. --
  23033. -- Name: irlinv_site; Type: VIEW; Schema: so; Owner: -
  23034. --
  23035. CREATE VIEW irlinv_site AS
  23036. SELECT feature.feature_id AS irlinv_site_id,
  23037. feature.feature_id,
  23038. feature.dbxref_id,
  23039. feature.organism_id,
  23040. feature.name,
  23041. feature.uniquename,
  23042. feature.residues,
  23043. feature.seqlen,
  23044. feature.md5checksum,
  23045. feature.type_id,
  23046. feature.is_analysis,
  23047. feature.is_obsolete,
  23048. feature.timeaccessioned,
  23049. feature.timelastmodified
  23050. FROM (feature
  23051. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23052. WHERE ((cvterm.name)::text = 'IRLinv_site'::text);
  23053. --
  23054. -- Name: iron_responsive_element; Type: VIEW; Schema: so; Owner: -
  23055. --
  23056. CREATE VIEW iron_responsive_element AS
  23057. SELECT feature.feature_id AS iron_responsive_element_id,
  23058. feature.feature_id,
  23059. feature.dbxref_id,
  23060. feature.organism_id,
  23061. feature.name,
  23062. feature.uniquename,
  23063. feature.residues,
  23064. feature.seqlen,
  23065. feature.md5checksum,
  23066. feature.type_id,
  23067. feature.is_analysis,
  23068. feature.is_obsolete,
  23069. feature.timeaccessioned,
  23070. feature.timelastmodified
  23071. FROM (feature
  23072. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23073. WHERE ((cvterm.name)::text = 'iron_responsive_element'::text);
  23074. --
  23075. -- Name: irrinv_site; Type: VIEW; Schema: so; Owner: -
  23076. --
  23077. CREATE VIEW irrinv_site AS
  23078. SELECT feature.feature_id AS irrinv_site_id,
  23079. feature.feature_id,
  23080. feature.dbxref_id,
  23081. feature.organism_id,
  23082. feature.name,
  23083. feature.uniquename,
  23084. feature.residues,
  23085. feature.seqlen,
  23086. feature.md5checksum,
  23087. feature.type_id,
  23088. feature.is_analysis,
  23089. feature.is_obsolete,
  23090. feature.timeaccessioned,
  23091. feature.timelastmodified
  23092. FROM (feature
  23093. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23094. WHERE ((cvterm.name)::text = 'IRRinv_site'::text);
  23095. --
  23096. -- Name: isoleucine; Type: VIEW; Schema: so; Owner: -
  23097. --
  23098. CREATE VIEW isoleucine AS
  23099. SELECT feature.feature_id AS isoleucine_id,
  23100. feature.feature_id,
  23101. feature.dbxref_id,
  23102. feature.organism_id,
  23103. feature.name,
  23104. feature.uniquename,
  23105. feature.residues,
  23106. feature.seqlen,
  23107. feature.md5checksum,
  23108. feature.type_id,
  23109. feature.is_analysis,
  23110. feature.is_obsolete,
  23111. feature.timeaccessioned,
  23112. feature.timelastmodified
  23113. FROM (feature
  23114. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23115. WHERE ((cvterm.name)::text = 'isoleucine'::text);
  23116. --
  23117. -- Name: isoleucine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  23118. --
  23119. CREATE VIEW isoleucine_trna_primary_transcript AS
  23120. SELECT feature.feature_id AS isoleucine_trna_primary_transcript_id,
  23121. feature.feature_id,
  23122. feature.dbxref_id,
  23123. feature.organism_id,
  23124. feature.name,
  23125. feature.uniquename,
  23126. feature.residues,
  23127. feature.seqlen,
  23128. feature.md5checksum,
  23129. feature.type_id,
  23130. feature.is_analysis,
  23131. feature.is_obsolete,
  23132. feature.timeaccessioned,
  23133. feature.timelastmodified
  23134. FROM (feature
  23135. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23136. WHERE ((cvterm.name)::text = 'isoleucine_tRNA_primary_transcript'::text);
  23137. --
  23138. -- Name: isoleucyl_trna; Type: VIEW; Schema: so; Owner: -
  23139. --
  23140. CREATE VIEW isoleucyl_trna AS
  23141. SELECT feature.feature_id AS isoleucyl_trna_id,
  23142. feature.feature_id,
  23143. feature.dbxref_id,
  23144. feature.organism_id,
  23145. feature.name,
  23146. feature.uniquename,
  23147. feature.residues,
  23148. feature.seqlen,
  23149. feature.md5checksum,
  23150. feature.type_id,
  23151. feature.is_analysis,
  23152. feature.is_obsolete,
  23153. feature.timeaccessioned,
  23154. feature.timelastmodified
  23155. FROM (feature
  23156. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23157. WHERE ((cvterm.name)::text = 'isoleucyl_tRNA'::text);
  23158. --
  23159. -- Name: isowyosine; Type: VIEW; Schema: so; Owner: -
  23160. --
  23161. CREATE VIEW isowyosine AS
  23162. SELECT feature.feature_id AS isowyosine_id,
  23163. feature.feature_id,
  23164. feature.dbxref_id,
  23165. feature.organism_id,
  23166. feature.name,
  23167. feature.uniquename,
  23168. feature.residues,
  23169. feature.seqlen,
  23170. feature.md5checksum,
  23171. feature.type_id,
  23172. feature.is_analysis,
  23173. feature.is_obsolete,
  23174. feature.timeaccessioned,
  23175. feature.timelastmodified
  23176. FROM (feature
  23177. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23178. WHERE ((cvterm.name)::text = 'isowyosine'::text);
  23179. --
  23180. -- Name: isre; Type: VIEW; Schema: so; Owner: -
  23181. --
  23182. CREATE VIEW isre AS
  23183. SELECT feature.feature_id AS isre_id,
  23184. feature.feature_id,
  23185. feature.dbxref_id,
  23186. feature.organism_id,
  23187. feature.name,
  23188. feature.uniquename,
  23189. feature.residues,
  23190. feature.seqlen,
  23191. feature.md5checksum,
  23192. feature.type_id,
  23193. feature.is_analysis,
  23194. feature.is_obsolete,
  23195. feature.timeaccessioned,
  23196. feature.timelastmodified
  23197. FROM (feature
  23198. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23199. WHERE ((cvterm.name)::text = 'ISRE'::text);
  23200. --
  23201. -- Name: j_c_cluster; Type: VIEW; Schema: so; Owner: -
  23202. --
  23203. CREATE VIEW j_c_cluster AS
  23204. SELECT feature.feature_id AS j_c_cluster_id,
  23205. feature.feature_id,
  23206. feature.dbxref_id,
  23207. feature.organism_id,
  23208. feature.name,
  23209. feature.uniquename,
  23210. feature.residues,
  23211. feature.seqlen,
  23212. feature.md5checksum,
  23213. feature.type_id,
  23214. feature.is_analysis,
  23215. feature.is_obsolete,
  23216. feature.timeaccessioned,
  23217. feature.timelastmodified
  23218. FROM (feature
  23219. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23220. WHERE ((cvterm.name)::text = 'J_C_cluster'::text);
  23221. --
  23222. -- Name: j_cluster; Type: VIEW; Schema: so; Owner: -
  23223. --
  23224. CREATE VIEW j_cluster AS
  23225. SELECT feature.feature_id AS j_cluster_id,
  23226. feature.feature_id,
  23227. feature.dbxref_id,
  23228. feature.organism_id,
  23229. feature.name,
  23230. feature.uniquename,
  23231. feature.residues,
  23232. feature.seqlen,
  23233. feature.md5checksum,
  23234. feature.type_id,
  23235. feature.is_analysis,
  23236. feature.is_obsolete,
  23237. feature.timeaccessioned,
  23238. feature.timelastmodified
  23239. FROM (feature
  23240. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23241. WHERE ((cvterm.name)::text = 'J_cluster'::text);
  23242. --
  23243. -- Name: j_gene; Type: VIEW; Schema: so; Owner: -
  23244. --
  23245. CREATE VIEW j_gene AS
  23246. SELECT feature.feature_id AS j_gene_id,
  23247. feature.feature_id,
  23248. feature.dbxref_id,
  23249. feature.organism_id,
  23250. feature.name,
  23251. feature.uniquename,
  23252. feature.residues,
  23253. feature.seqlen,
  23254. feature.md5checksum,
  23255. feature.type_id,
  23256. feature.is_analysis,
  23257. feature.is_obsolete,
  23258. feature.timeaccessioned,
  23259. feature.timelastmodified
  23260. FROM (feature
  23261. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23262. WHERE ((cvterm.name)::text = 'J_gene'::text);
  23263. --
  23264. -- Name: j_gene_recombination_feature; Type: VIEW; Schema: so; Owner: -
  23265. --
  23266. CREATE VIEW j_gene_recombination_feature AS
  23267. SELECT feature.feature_id AS j_gene_recombination_feature_id,
  23268. feature.feature_id,
  23269. feature.dbxref_id,
  23270. feature.organism_id,
  23271. feature.name,
  23272. feature.uniquename,
  23273. feature.residues,
  23274. feature.seqlen,
  23275. feature.md5checksum,
  23276. feature.type_id,
  23277. feature.is_analysis,
  23278. feature.is_obsolete,
  23279. feature.timeaccessioned,
  23280. feature.timelastmodified
  23281. FROM (feature
  23282. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23283. WHERE ((cvterm.name)::text = 'J_gene_recombination_feature'::text);
  23284. --
  23285. -- Name: j_heptamer; Type: VIEW; Schema: so; Owner: -
  23286. --
  23287. CREATE VIEW j_heptamer AS
  23288. SELECT feature.feature_id AS j_heptamer_id,
  23289. feature.feature_id,
  23290. feature.dbxref_id,
  23291. feature.organism_id,
  23292. feature.name,
  23293. feature.uniquename,
  23294. feature.residues,
  23295. feature.seqlen,
  23296. feature.md5checksum,
  23297. feature.type_id,
  23298. feature.is_analysis,
  23299. feature.is_obsolete,
  23300. feature.timeaccessioned,
  23301. feature.timelastmodified
  23302. FROM (feature
  23303. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23304. WHERE ((cvterm.name)::text = 'J_heptamer'::text);
  23305. --
  23306. -- Name: j_nonamer; Type: VIEW; Schema: so; Owner: -
  23307. --
  23308. CREATE VIEW j_nonamer AS
  23309. SELECT feature.feature_id AS j_nonamer_id,
  23310. feature.feature_id,
  23311. feature.dbxref_id,
  23312. feature.organism_id,
  23313. feature.name,
  23314. feature.uniquename,
  23315. feature.residues,
  23316. feature.seqlen,
  23317. feature.md5checksum,
  23318. feature.type_id,
  23319. feature.is_analysis,
  23320. feature.is_obsolete,
  23321. feature.timeaccessioned,
  23322. feature.timelastmodified
  23323. FROM (feature
  23324. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23325. WHERE ((cvterm.name)::text = 'J_nonamer'::text);
  23326. --
  23327. -- Name: j_spacer; Type: VIEW; Schema: so; Owner: -
  23328. --
  23329. CREATE VIEW j_spacer AS
  23330. SELECT feature.feature_id AS j_spacer_id,
  23331. feature.feature_id,
  23332. feature.dbxref_id,
  23333. feature.organism_id,
  23334. feature.name,
  23335. feature.uniquename,
  23336. feature.residues,
  23337. feature.seqlen,
  23338. feature.md5checksum,
  23339. feature.type_id,
  23340. feature.is_analysis,
  23341. feature.is_obsolete,
  23342. feature.timeaccessioned,
  23343. feature.timelastmodified
  23344. FROM (feature
  23345. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23346. WHERE ((cvterm.name)::text = 'J_spacer'::text);
  23347. --
  23348. -- Name: junction; Type: VIEW; Schema: so; Owner: -
  23349. --
  23350. CREATE VIEW junction AS
  23351. SELECT feature.feature_id AS junction_id,
  23352. feature.feature_id,
  23353. feature.dbxref_id,
  23354. feature.organism_id,
  23355. feature.name,
  23356. feature.uniquename,
  23357. feature.residues,
  23358. feature.seqlen,
  23359. feature.md5checksum,
  23360. feature.type_id,
  23361. feature.is_analysis,
  23362. feature.is_obsolete,
  23363. feature.timeaccessioned,
  23364. feature.timelastmodified
  23365. FROM (feature
  23366. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23367. WHERE (((((((((((((((((((((cvterm.name)::text = 'clone_insert_end'::text) OR ((cvterm.name)::text = 'clone_insert_start'::text)) OR ((cvterm.name)::text = 'exon_junction'::text)) OR ((cvterm.name)::text = 'insertion_site'::text)) OR ((cvterm.name)::text = 'polyA_site'::text)) OR ((cvterm.name)::text = 'deletion_junction'::text)) OR ((cvterm.name)::text = 'chromosome_breakpoint'::text)) OR ((cvterm.name)::text = 'splice_junction'::text)) OR ((cvterm.name)::text = 'trans_splice_junction'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_cleavage_junction'::text)) OR ((cvterm.name)::text = 'transposable_element_insertion_site'::text)) OR ((cvterm.name)::text = 'inversion_breakpoint'::text)) OR ((cvterm.name)::text = 'translocation_breakpoint'::text)) OR ((cvterm.name)::text = 'insertion_breakpoint'::text)) OR ((cvterm.name)::text = 'deletion_breakpoint'::text)) OR ((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_junction'::text)) OR ((cvterm.name)::text = 'single_strand_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'five_prime_restriction_enzyme_junction'::text)) OR ((cvterm.name)::text = 'three_prime_restriction_enzyme_junction'::text)) OR ((cvterm.name)::text = 'junction'::text));
  23368. --
  23369. -- Name: k_turn_rna_motif; Type: VIEW; Schema: so; Owner: -
  23370. --
  23371. CREATE VIEW k_turn_rna_motif AS
  23372. SELECT feature.feature_id AS k_turn_rna_motif_id,
  23373. feature.feature_id,
  23374. feature.dbxref_id,
  23375. feature.organism_id,
  23376. feature.name,
  23377. feature.uniquename,
  23378. feature.residues,
  23379. feature.seqlen,
  23380. feature.md5checksum,
  23381. feature.type_id,
  23382. feature.is_analysis,
  23383. feature.is_obsolete,
  23384. feature.timeaccessioned,
  23385. feature.timelastmodified
  23386. FROM (feature
  23387. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23388. WHERE ((cvterm.name)::text = 'K_turn_RNA_motif'::text);
  23389. --
  23390. -- Name: kinetoplast; Type: VIEW; Schema: so; Owner: -
  23391. --
  23392. CREATE VIEW kinetoplast AS
  23393. SELECT feature.feature_id AS kinetoplast_id,
  23394. feature.feature_id,
  23395. feature.dbxref_id,
  23396. feature.organism_id,
  23397. feature.name,
  23398. feature.uniquename,
  23399. feature.residues,
  23400. feature.seqlen,
  23401. feature.md5checksum,
  23402. feature.type_id,
  23403. feature.is_analysis,
  23404. feature.is_obsolete,
  23405. feature.timeaccessioned,
  23406. feature.timelastmodified
  23407. FROM (feature
  23408. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23409. WHERE ((cvterm.name)::text = 'kinetoplast'::text);
  23410. --
  23411. -- Name: kinetoplast_gene; Type: VIEW; Schema: so; Owner: -
  23412. --
  23413. CREATE VIEW kinetoplast_gene AS
  23414. SELECT feature.feature_id AS kinetoplast_gene_id,
  23415. feature.feature_id,
  23416. feature.dbxref_id,
  23417. feature.organism_id,
  23418. feature.name,
  23419. feature.uniquename,
  23420. feature.residues,
  23421. feature.seqlen,
  23422. feature.md5checksum,
  23423. feature.type_id,
  23424. feature.is_analysis,
  23425. feature.is_obsolete,
  23426. feature.timeaccessioned,
  23427. feature.timelastmodified
  23428. FROM (feature
  23429. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23430. WHERE (((((cvterm.name)::text = 'maxicircle_gene'::text) OR ((cvterm.name)::text = 'minicircle_gene'::text)) OR ((cvterm.name)::text = 'cryptogene'::text)) OR ((cvterm.name)::text = 'kinetoplast_gene'::text));
  23431. --
  23432. -- Name: kozak_sequence; Type: VIEW; Schema: so; Owner: -
  23433. --
  23434. CREATE VIEW kozak_sequence AS
  23435. SELECT feature.feature_id AS kozak_sequence_id,
  23436. feature.feature_id,
  23437. feature.dbxref_id,
  23438. feature.organism_id,
  23439. feature.name,
  23440. feature.uniquename,
  23441. feature.residues,
  23442. feature.seqlen,
  23443. feature.md5checksum,
  23444. feature.type_id,
  23445. feature.is_analysis,
  23446. feature.is_obsolete,
  23447. feature.timeaccessioned,
  23448. feature.timelastmodified
  23449. FROM (feature
  23450. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23451. WHERE ((cvterm.name)::text = 'kozak_sequence'::text);
  23452. --
  23453. -- Name: laevosynaptic_chromosome; Type: VIEW; Schema: so; Owner: -
  23454. --
  23455. CREATE VIEW laevosynaptic_chromosome AS
  23456. SELECT feature.feature_id AS laevosynaptic_chromosome_id,
  23457. feature.feature_id,
  23458. feature.dbxref_id,
  23459. feature.organism_id,
  23460. feature.name,
  23461. feature.uniquename,
  23462. feature.residues,
  23463. feature.seqlen,
  23464. feature.md5checksum,
  23465. feature.type_id,
  23466. feature.is_analysis,
  23467. feature.is_obsolete,
  23468. feature.timeaccessioned,
  23469. feature.timelastmodified
  23470. FROM (feature
  23471. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23472. WHERE ((cvterm.name)::text = 'laevosynaptic_chromosome'::text);
  23473. --
  23474. -- Name: lambda_vector; Type: VIEW; Schema: so; Owner: -
  23475. --
  23476. CREATE VIEW lambda_vector AS
  23477. SELECT feature.feature_id AS lambda_vector_id,
  23478. feature.feature_id,
  23479. feature.dbxref_id,
  23480. feature.organism_id,
  23481. feature.name,
  23482. feature.uniquename,
  23483. feature.residues,
  23484. feature.seqlen,
  23485. feature.md5checksum,
  23486. feature.type_id,
  23487. feature.is_analysis,
  23488. feature.is_obsolete,
  23489. feature.timeaccessioned,
  23490. feature.timelastmodified
  23491. FROM (feature
  23492. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23493. WHERE ((cvterm.name)::text = 'lambda_vector'::text);
  23494. --
  23495. -- Name: large_subunit_rrna; Type: VIEW; Schema: so; Owner: -
  23496. --
  23497. CREATE VIEW large_subunit_rrna AS
  23498. SELECT feature.feature_id AS large_subunit_rrna_id,
  23499. feature.feature_id,
  23500. feature.dbxref_id,
  23501. feature.organism_id,
  23502. feature.name,
  23503. feature.uniquename,
  23504. feature.residues,
  23505. feature.seqlen,
  23506. feature.md5checksum,
  23507. feature.type_id,
  23508. feature.is_analysis,
  23509. feature.is_obsolete,
  23510. feature.timeaccessioned,
  23511. feature.timelastmodified
  23512. FROM (feature
  23513. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23514. WHERE ((((((((cvterm.name)::text = 'rRNA_5_8S'::text) OR ((cvterm.name)::text = 'rRNA_5S'::text)) OR ((cvterm.name)::text = 'rRNA_28S'::text)) OR ((cvterm.name)::text = 'rRNA_23S'::text)) OR ((cvterm.name)::text = 'rRNA_25S'::text)) OR ((cvterm.name)::text = 'rRNA_21S'::text)) OR ((cvterm.name)::text = 'large_subunit_rRNA'::text));
  23515. --
  23516. -- Name: left_handed_peptide_helix; Type: VIEW; Schema: so; Owner: -
  23517. --
  23518. CREATE VIEW left_handed_peptide_helix AS
  23519. SELECT feature.feature_id AS left_handed_peptide_helix_id,
  23520. feature.feature_id,
  23521. feature.dbxref_id,
  23522. feature.organism_id,
  23523. feature.name,
  23524. feature.uniquename,
  23525. feature.residues,
  23526. feature.seqlen,
  23527. feature.md5checksum,
  23528. feature.type_id,
  23529. feature.is_analysis,
  23530. feature.is_obsolete,
  23531. feature.timeaccessioned,
  23532. feature.timelastmodified
  23533. FROM (feature
  23534. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23535. WHERE ((cvterm.name)::text = 'left_handed_peptide_helix'::text);
  23536. --
  23537. -- Name: lethal_variant; Type: VIEW; Schema: so; Owner: -
  23538. --
  23539. CREATE VIEW lethal_variant AS
  23540. SELECT feature.feature_id AS lethal_variant_id,
  23541. feature.feature_id,
  23542. feature.dbxref_id,
  23543. feature.organism_id,
  23544. feature.name,
  23545. feature.uniquename,
  23546. feature.residues,
  23547. feature.seqlen,
  23548. feature.md5checksum,
  23549. feature.type_id,
  23550. feature.is_analysis,
  23551. feature.is_obsolete,
  23552. feature.timeaccessioned,
  23553. feature.timelastmodified
  23554. FROM (feature
  23555. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23556. WHERE ((cvterm.name)::text = 'lethal_variant'::text);
  23557. --
  23558. -- Name: leucine; Type: VIEW; Schema: so; Owner: -
  23559. --
  23560. CREATE VIEW leucine AS
  23561. SELECT feature.feature_id AS leucine_id,
  23562. feature.feature_id,
  23563. feature.dbxref_id,
  23564. feature.organism_id,
  23565. feature.name,
  23566. feature.uniquename,
  23567. feature.residues,
  23568. feature.seqlen,
  23569. feature.md5checksum,
  23570. feature.type_id,
  23571. feature.is_analysis,
  23572. feature.is_obsolete,
  23573. feature.timeaccessioned,
  23574. feature.timelastmodified
  23575. FROM (feature
  23576. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23577. WHERE ((cvterm.name)::text = 'leucine'::text);
  23578. --
  23579. -- Name: leucine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  23580. --
  23581. CREATE VIEW leucine_trna_primary_transcript AS
  23582. SELECT feature.feature_id AS leucine_trna_primary_transcript_id,
  23583. feature.feature_id,
  23584. feature.dbxref_id,
  23585. feature.organism_id,
  23586. feature.name,
  23587. feature.uniquename,
  23588. feature.residues,
  23589. feature.seqlen,
  23590. feature.md5checksum,
  23591. feature.type_id,
  23592. feature.is_analysis,
  23593. feature.is_obsolete,
  23594. feature.timeaccessioned,
  23595. feature.timelastmodified
  23596. FROM (feature
  23597. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23598. WHERE ((cvterm.name)::text = 'leucine_tRNA_primary_transcript'::text);
  23599. --
  23600. -- Name: leucoplast_chromosome; Type: VIEW; Schema: so; Owner: -
  23601. --
  23602. CREATE VIEW leucoplast_chromosome AS
  23603. SELECT feature.feature_id AS leucoplast_chromosome_id,
  23604. feature.feature_id,
  23605. feature.dbxref_id,
  23606. feature.organism_id,
  23607. feature.name,
  23608. feature.uniquename,
  23609. feature.residues,
  23610. feature.seqlen,
  23611. feature.md5checksum,
  23612. feature.type_id,
  23613. feature.is_analysis,
  23614. feature.is_obsolete,
  23615. feature.timeaccessioned,
  23616. feature.timelastmodified
  23617. FROM (feature
  23618. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23619. WHERE ((cvterm.name)::text = 'leucoplast_chromosome'::text);
  23620. --
  23621. -- Name: leucoplast_gene; Type: VIEW; Schema: so; Owner: -
  23622. --
  23623. CREATE VIEW leucoplast_gene AS
  23624. SELECT feature.feature_id AS leucoplast_gene_id,
  23625. feature.feature_id,
  23626. feature.dbxref_id,
  23627. feature.organism_id,
  23628. feature.name,
  23629. feature.uniquename,
  23630. feature.residues,
  23631. feature.seqlen,
  23632. feature.md5checksum,
  23633. feature.type_id,
  23634. feature.is_analysis,
  23635. feature.is_obsolete,
  23636. feature.timeaccessioned,
  23637. feature.timelastmodified
  23638. FROM (feature
  23639. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23640. WHERE ((cvterm.name)::text = 'leucoplast_gene'::text);
  23641. --
  23642. -- Name: leucoplast_sequence; Type: VIEW; Schema: so; Owner: -
  23643. --
  23644. CREATE VIEW leucoplast_sequence AS
  23645. SELECT feature.feature_id AS leucoplast_sequence_id,
  23646. feature.feature_id,
  23647. feature.dbxref_id,
  23648. feature.organism_id,
  23649. feature.name,
  23650. feature.uniquename,
  23651. feature.residues,
  23652. feature.seqlen,
  23653. feature.md5checksum,
  23654. feature.type_id,
  23655. feature.is_analysis,
  23656. feature.is_obsolete,
  23657. feature.timeaccessioned,
  23658. feature.timelastmodified
  23659. FROM (feature
  23660. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23661. WHERE ((cvterm.name)::text = 'leucoplast_sequence'::text);
  23662. --
  23663. -- Name: leucyl_trna; Type: VIEW; Schema: so; Owner: -
  23664. --
  23665. CREATE VIEW leucyl_trna AS
  23666. SELECT feature.feature_id AS leucyl_trna_id,
  23667. feature.feature_id,
  23668. feature.dbxref_id,
  23669. feature.organism_id,
  23670. feature.name,
  23671. feature.uniquename,
  23672. feature.residues,
  23673. feature.seqlen,
  23674. feature.md5checksum,
  23675. feature.type_id,
  23676. feature.is_analysis,
  23677. feature.is_obsolete,
  23678. feature.timeaccessioned,
  23679. feature.timelastmodified
  23680. FROM (feature
  23681. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23682. WHERE ((cvterm.name)::text = 'leucyl_tRNA'::text);
  23683. --
  23684. -- Name: level_of_transcript_variant; Type: VIEW; Schema: so; Owner: -
  23685. --
  23686. CREATE VIEW level_of_transcript_variant AS
  23687. SELECT feature.feature_id AS level_of_transcript_variant_id,
  23688. feature.feature_id,
  23689. feature.dbxref_id,
  23690. feature.organism_id,
  23691. feature.name,
  23692. feature.uniquename,
  23693. feature.residues,
  23694. feature.seqlen,
  23695. feature.md5checksum,
  23696. feature.type_id,
  23697. feature.is_analysis,
  23698. feature.is_obsolete,
  23699. feature.timeaccessioned,
  23700. feature.timelastmodified
  23701. FROM (feature
  23702. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23703. WHERE ((((cvterm.name)::text = 'decreased_transcript_level_variant'::text) OR ((cvterm.name)::text = 'increased_transcript_level_variant'::text)) OR ((cvterm.name)::text = 'level_of_transcript_variant'::text));
  23704. --
  23705. -- Name: ligand_binding_site; Type: VIEW; Schema: so; Owner: -
  23706. --
  23707. CREATE VIEW ligand_binding_site AS
  23708. SELECT feature.feature_id AS ligand_binding_site_id,
  23709. feature.feature_id,
  23710. feature.dbxref_id,
  23711. feature.organism_id,
  23712. feature.name,
  23713. feature.uniquename,
  23714. feature.residues,
  23715. feature.seqlen,
  23716. feature.md5checksum,
  23717. feature.type_id,
  23718. feature.is_analysis,
  23719. feature.is_obsolete,
  23720. feature.timeaccessioned,
  23721. feature.timelastmodified
  23722. FROM (feature
  23723. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23724. WHERE (((cvterm.name)::text = 'polypeptide_ligand_contact'::text) OR ((cvterm.name)::text = 'ligand_binding_site'::text));
  23725. --
  23726. -- Name: ligation_based_read; Type: VIEW; Schema: so; Owner: -
  23727. --
  23728. CREATE VIEW ligation_based_read AS
  23729. SELECT feature.feature_id AS ligation_based_read_id,
  23730. feature.feature_id,
  23731. feature.dbxref_id,
  23732. feature.organism_id,
  23733. feature.name,
  23734. feature.uniquename,
  23735. feature.residues,
  23736. feature.seqlen,
  23737. feature.md5checksum,
  23738. feature.type_id,
  23739. feature.is_analysis,
  23740. feature.is_obsolete,
  23741. feature.timeaccessioned,
  23742. feature.timelastmodified
  23743. FROM (feature
  23744. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23745. WHERE ((cvterm.name)::text = 'ligation_based_read'::text);
  23746. --
  23747. -- Name: lincrna; Type: VIEW; Schema: so; Owner: -
  23748. --
  23749. CREATE VIEW lincrna AS
  23750. SELECT feature.feature_id AS lincrna_id,
  23751. feature.feature_id,
  23752. feature.dbxref_id,
  23753. feature.organism_id,
  23754. feature.name,
  23755. feature.uniquename,
  23756. feature.residues,
  23757. feature.seqlen,
  23758. feature.md5checksum,
  23759. feature.type_id,
  23760. feature.is_analysis,
  23761. feature.is_obsolete,
  23762. feature.timeaccessioned,
  23763. feature.timelastmodified
  23764. FROM (feature
  23765. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23766. WHERE ((cvterm.name)::text = 'lincRNA'::text);
  23767. --
  23768. -- Name: lincrna_gene; Type: VIEW; Schema: so; Owner: -
  23769. --
  23770. CREATE VIEW lincrna_gene AS
  23771. SELECT feature.feature_id AS lincrna_gene_id,
  23772. feature.feature_id,
  23773. feature.dbxref_id,
  23774. feature.organism_id,
  23775. feature.name,
  23776. feature.uniquename,
  23777. feature.residues,
  23778. feature.seqlen,
  23779. feature.md5checksum,
  23780. feature.type_id,
  23781. feature.is_analysis,
  23782. feature.is_obsolete,
  23783. feature.timeaccessioned,
  23784. feature.timelastmodified
  23785. FROM (feature
  23786. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23787. WHERE ((cvterm.name)::text = 'lincRNA_gene'::text);
  23788. --
  23789. -- Name: line_element; Type: VIEW; Schema: so; Owner: -
  23790. --
  23791. CREATE VIEW line_element AS
  23792. SELECT feature.feature_id AS line_element_id,
  23793. feature.feature_id,
  23794. feature.dbxref_id,
  23795. feature.organism_id,
  23796. feature.name,
  23797. feature.uniquename,
  23798. feature.residues,
  23799. feature.seqlen,
  23800. feature.md5checksum,
  23801. feature.type_id,
  23802. feature.is_analysis,
  23803. feature.is_obsolete,
  23804. feature.timeaccessioned,
  23805. feature.timelastmodified
  23806. FROM (feature
  23807. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23808. WHERE ((cvterm.name)::text = 'LINE_element'::text);
  23809. --
  23810. -- Name: linear; Type: VIEW; Schema: so; Owner: -
  23811. --
  23812. CREATE VIEW linear AS
  23813. SELECT feature.feature_id AS linear_id,
  23814. feature.feature_id,
  23815. feature.dbxref_id,
  23816. feature.organism_id,
  23817. feature.name,
  23818. feature.uniquename,
  23819. feature.residues,
  23820. feature.seqlen,
  23821. feature.md5checksum,
  23822. feature.type_id,
  23823. feature.is_analysis,
  23824. feature.is_obsolete,
  23825. feature.timeaccessioned,
  23826. feature.timelastmodified
  23827. FROM (feature
  23828. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23829. WHERE ((cvterm.name)::text = 'linear'::text);
  23830. --
  23831. -- Name: linear_double_stranded_dna_chromosome; Type: VIEW; Schema: so; Owner: -
  23832. --
  23833. CREATE VIEW linear_double_stranded_dna_chromosome AS
  23834. SELECT feature.feature_id AS linear_double_stranded_dna_chromosome_id,
  23835. feature.feature_id,
  23836. feature.dbxref_id,
  23837. feature.organism_id,
  23838. feature.name,
  23839. feature.uniquename,
  23840. feature.residues,
  23841. feature.seqlen,
  23842. feature.md5checksum,
  23843. feature.type_id,
  23844. feature.is_analysis,
  23845. feature.is_obsolete,
  23846. feature.timeaccessioned,
  23847. feature.timelastmodified
  23848. FROM (feature
  23849. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23850. WHERE ((cvterm.name)::text = 'linear_double_stranded_DNA_chromosome'::text);
  23851. --
  23852. -- Name: linear_double_stranded_rna_chromosome; Type: VIEW; Schema: so; Owner: -
  23853. --
  23854. CREATE VIEW linear_double_stranded_rna_chromosome AS
  23855. SELECT feature.feature_id AS linear_double_stranded_rna_chromosome_id,
  23856. feature.feature_id,
  23857. feature.dbxref_id,
  23858. feature.organism_id,
  23859. feature.name,
  23860. feature.uniquename,
  23861. feature.residues,
  23862. feature.seqlen,
  23863. feature.md5checksum,
  23864. feature.type_id,
  23865. feature.is_analysis,
  23866. feature.is_obsolete,
  23867. feature.timeaccessioned,
  23868. feature.timelastmodified
  23869. FROM (feature
  23870. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23871. WHERE ((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text);
  23872. --
  23873. -- Name: linear_single_stranded_dna_chromosome; Type: VIEW; Schema: so; Owner: -
  23874. --
  23875. CREATE VIEW linear_single_stranded_dna_chromosome AS
  23876. SELECT feature.feature_id AS linear_single_stranded_dna_chromosome_id,
  23877. feature.feature_id,
  23878. feature.dbxref_id,
  23879. feature.organism_id,
  23880. feature.name,
  23881. feature.uniquename,
  23882. feature.residues,
  23883. feature.seqlen,
  23884. feature.md5checksum,
  23885. feature.type_id,
  23886. feature.is_analysis,
  23887. feature.is_obsolete,
  23888. feature.timeaccessioned,
  23889. feature.timelastmodified
  23890. FROM (feature
  23891. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23892. WHERE ((cvterm.name)::text = 'linear_single_stranded_DNA_chromosome'::text);
  23893. --
  23894. -- Name: linear_single_stranded_rna_chromosome; Type: VIEW; Schema: so; Owner: -
  23895. --
  23896. CREATE VIEW linear_single_stranded_rna_chromosome AS
  23897. SELECT feature.feature_id AS linear_single_stranded_rna_chromosome_id,
  23898. feature.feature_id,
  23899. feature.dbxref_id,
  23900. feature.organism_id,
  23901. feature.name,
  23902. feature.uniquename,
  23903. feature.residues,
  23904. feature.seqlen,
  23905. feature.md5checksum,
  23906. feature.type_id,
  23907. feature.is_analysis,
  23908. feature.is_obsolete,
  23909. feature.timeaccessioned,
  23910. feature.timelastmodified
  23911. FROM (feature
  23912. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23913. WHERE ((cvterm.name)::text = 'linear_single_stranded_RNA_chromosome'::text);
  23914. --
  23915. -- Name: linkage_group; Type: VIEW; Schema: so; Owner: -
  23916. --
  23917. CREATE VIEW linkage_group AS
  23918. SELECT feature.feature_id AS linkage_group_id,
  23919. feature.feature_id,
  23920. feature.dbxref_id,
  23921. feature.organism_id,
  23922. feature.name,
  23923. feature.uniquename,
  23924. feature.residues,
  23925. feature.seqlen,
  23926. feature.md5checksum,
  23927. feature.type_id,
  23928. feature.is_analysis,
  23929. feature.is_obsolete,
  23930. feature.timeaccessioned,
  23931. feature.timelastmodified
  23932. FROM (feature
  23933. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23934. WHERE ((cvterm.name)::text = 'linkage_group'::text);
  23935. --
  23936. -- Name: lipoprotein_signal_peptide; Type: VIEW; Schema: so; Owner: -
  23937. --
  23938. CREATE VIEW lipoprotein_signal_peptide AS
  23939. SELECT feature.feature_id AS lipoprotein_signal_peptide_id,
  23940. feature.feature_id,
  23941. feature.dbxref_id,
  23942. feature.organism_id,
  23943. feature.name,
  23944. feature.uniquename,
  23945. feature.residues,
  23946. feature.seqlen,
  23947. feature.md5checksum,
  23948. feature.type_id,
  23949. feature.is_analysis,
  23950. feature.is_obsolete,
  23951. feature.timeaccessioned,
  23952. feature.timelastmodified
  23953. FROM (feature
  23954. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23955. WHERE ((cvterm.name)::text = 'lipoprotein_signal_peptide'::text);
  23956. --
  23957. -- Name: lna; Type: VIEW; Schema: so; Owner: -
  23958. --
  23959. CREATE VIEW lna AS
  23960. SELECT feature.feature_id AS lna_id,
  23961. feature.feature_id,
  23962. feature.dbxref_id,
  23963. feature.organism_id,
  23964. feature.name,
  23965. feature.uniquename,
  23966. feature.residues,
  23967. feature.seqlen,
  23968. feature.md5checksum,
  23969. feature.type_id,
  23970. feature.is_analysis,
  23971. feature.is_obsolete,
  23972. feature.timeaccessioned,
  23973. feature.timelastmodified
  23974. FROM (feature
  23975. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23976. WHERE ((cvterm.name)::text = 'LNA'::text);
  23977. --
  23978. -- Name: lna_oligo; Type: VIEW; Schema: so; Owner: -
  23979. --
  23980. CREATE VIEW lna_oligo AS
  23981. SELECT feature.feature_id AS lna_oligo_id,
  23982. feature.feature_id,
  23983. feature.dbxref_id,
  23984. feature.organism_id,
  23985. feature.name,
  23986. feature.uniquename,
  23987. feature.residues,
  23988. feature.seqlen,
  23989. feature.md5checksum,
  23990. feature.type_id,
  23991. feature.is_analysis,
  23992. feature.is_obsolete,
  23993. feature.timeaccessioned,
  23994. feature.timelastmodified
  23995. FROM (feature
  23996. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  23997. WHERE ((cvterm.name)::text = 'LNA_oligo'::text);
  23998. --
  23999. -- Name: locus_control_region; Type: VIEW; Schema: so; Owner: -
  24000. --
  24001. CREATE VIEW locus_control_region AS
  24002. SELECT feature.feature_id AS locus_control_region_id,
  24003. feature.feature_id,
  24004. feature.dbxref_id,
  24005. feature.organism_id,
  24006. feature.name,
  24007. feature.uniquename,
  24008. feature.residues,
  24009. feature.seqlen,
  24010. feature.md5checksum,
  24011. feature.type_id,
  24012. feature.is_analysis,
  24013. feature.is_obsolete,
  24014. feature.timeaccessioned,
  24015. feature.timelastmodified
  24016. FROM (feature
  24017. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24018. WHERE ((cvterm.name)::text = 'locus_control_region'::text);
  24019. --
  24020. -- Name: long_terminal_repeat; Type: VIEW; Schema: so; Owner: -
  24021. --
  24022. CREATE VIEW long_terminal_repeat AS
  24023. SELECT feature.feature_id AS long_terminal_repeat_id,
  24024. feature.feature_id,
  24025. feature.dbxref_id,
  24026. feature.organism_id,
  24027. feature.name,
  24028. feature.uniquename,
  24029. feature.residues,
  24030. feature.seqlen,
  24031. feature.md5checksum,
  24032. feature.type_id,
  24033. feature.is_analysis,
  24034. feature.is_obsolete,
  24035. feature.timeaccessioned,
  24036. feature.timelastmodified
  24037. FROM (feature
  24038. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24039. WHERE (((((cvterm.name)::text = 'five_prime_LTR'::text) OR ((cvterm.name)::text = 'three_prime_LTR'::text)) OR ((cvterm.name)::text = 'solo_LTR'::text)) OR ((cvterm.name)::text = 'long_terminal_repeat'::text));
  24040. --
  24041. -- Name: loss_of_heterozygosity; Type: VIEW; Schema: so; Owner: -
  24042. --
  24043. CREATE VIEW loss_of_heterozygosity AS
  24044. SELECT feature.feature_id AS loss_of_heterozygosity_id,
  24045. feature.feature_id,
  24046. feature.dbxref_id,
  24047. feature.organism_id,
  24048. feature.name,
  24049. feature.uniquename,
  24050. feature.residues,
  24051. feature.seqlen,
  24052. feature.md5checksum,
  24053. feature.type_id,
  24054. feature.is_analysis,
  24055. feature.is_obsolete,
  24056. feature.timeaccessioned,
  24057. feature.timelastmodified
  24058. FROM (feature
  24059. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24060. WHERE ((cvterm.name)::text = 'loss_of_heterozygosity'::text);
  24061. --
  24062. -- Name: low_complexity; Type: VIEW; Schema: so; Owner: -
  24063. --
  24064. CREATE VIEW low_complexity AS
  24065. SELECT feature.feature_id AS low_complexity_id,
  24066. feature.feature_id,
  24067. feature.dbxref_id,
  24068. feature.organism_id,
  24069. feature.name,
  24070. feature.uniquename,
  24071. feature.residues,
  24072. feature.seqlen,
  24073. feature.md5checksum,
  24074. feature.type_id,
  24075. feature.is_analysis,
  24076. feature.is_obsolete,
  24077. feature.timeaccessioned,
  24078. feature.timelastmodified
  24079. FROM (feature
  24080. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24081. WHERE ((cvterm.name)::text = 'low_complexity'::text);
  24082. --
  24083. -- Name: low_complexity_region; Type: VIEW; Schema: so; Owner: -
  24084. --
  24085. CREATE VIEW low_complexity_region AS
  24086. SELECT feature.feature_id AS low_complexity_region_id,
  24087. feature.feature_id,
  24088. feature.dbxref_id,
  24089. feature.organism_id,
  24090. feature.name,
  24091. feature.uniquename,
  24092. feature.residues,
  24093. feature.seqlen,
  24094. feature.md5checksum,
  24095. feature.type_id,
  24096. feature.is_analysis,
  24097. feature.is_obsolete,
  24098. feature.timeaccessioned,
  24099. feature.timelastmodified
  24100. FROM (feature
  24101. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24102. WHERE ((cvterm.name)::text = 'low_complexity_region'::text);
  24103. --
  24104. -- Name: loxp_site; Type: VIEW; Schema: so; Owner: -
  24105. --
  24106. CREATE VIEW loxp_site AS
  24107. SELECT feature.feature_id AS loxp_site_id,
  24108. feature.feature_id,
  24109. feature.dbxref_id,
  24110. feature.organism_id,
  24111. feature.name,
  24112. feature.uniquename,
  24113. feature.residues,
  24114. feature.seqlen,
  24115. feature.md5checksum,
  24116. feature.type_id,
  24117. feature.is_analysis,
  24118. feature.is_obsolete,
  24119. feature.timeaccessioned,
  24120. feature.timelastmodified
  24121. FROM (feature
  24122. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24123. WHERE ((cvterm.name)::text = 'loxP_site'::text);
  24124. --
  24125. -- Name: ltr_component; Type: VIEW; Schema: so; Owner: -
  24126. --
  24127. CREATE VIEW ltr_component AS
  24128. SELECT feature.feature_id AS ltr_component_id,
  24129. feature.feature_id,
  24130. feature.dbxref_id,
  24131. feature.organism_id,
  24132. feature.name,
  24133. feature.uniquename,
  24134. feature.residues,
  24135. feature.seqlen,
  24136. feature.md5checksum,
  24137. feature.type_id,
  24138. feature.is_analysis,
  24139. feature.is_obsolete,
  24140. feature.timeaccessioned,
  24141. feature.timelastmodified
  24142. FROM (feature
  24143. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24144. WHERE ((((((((((((((((cvterm.name)::text = 'U5_LTR_region'::text) OR ((cvterm.name)::text = 'R_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_LTR_region'::text)) OR ((cvterm.name)::text = 'three_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'five_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'LTR_component'::text));
  24145. --
  24146. -- Name: ltr_retrotransposon; Type: VIEW; Schema: so; Owner: -
  24147. --
  24148. CREATE VIEW ltr_retrotransposon AS
  24149. SELECT feature.feature_id AS ltr_retrotransposon_id,
  24150. feature.feature_id,
  24151. feature.dbxref_id,
  24152. feature.organism_id,
  24153. feature.name,
  24154. feature.uniquename,
  24155. feature.residues,
  24156. feature.seqlen,
  24157. feature.md5checksum,
  24158. feature.type_id,
  24159. feature.is_analysis,
  24160. feature.is_obsolete,
  24161. feature.timeaccessioned,
  24162. feature.timelastmodified
  24163. FROM (feature
  24164. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24165. WHERE ((cvterm.name)::text = 'LTR_retrotransposon'::text);
  24166. --
  24167. -- Name: lysidine; Type: VIEW; Schema: so; Owner: -
  24168. --
  24169. CREATE VIEW lysidine AS
  24170. SELECT feature.feature_id AS lysidine_id,
  24171. feature.feature_id,
  24172. feature.dbxref_id,
  24173. feature.organism_id,
  24174. feature.name,
  24175. feature.uniquename,
  24176. feature.residues,
  24177. feature.seqlen,
  24178. feature.md5checksum,
  24179. feature.type_id,
  24180. feature.is_analysis,
  24181. feature.is_obsolete,
  24182. feature.timeaccessioned,
  24183. feature.timelastmodified
  24184. FROM (feature
  24185. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24186. WHERE ((cvterm.name)::text = 'lysidine'::text);
  24187. --
  24188. -- Name: lysine; Type: VIEW; Schema: so; Owner: -
  24189. --
  24190. CREATE VIEW lysine AS
  24191. SELECT feature.feature_id AS lysine_id,
  24192. feature.feature_id,
  24193. feature.dbxref_id,
  24194. feature.organism_id,
  24195. feature.name,
  24196. feature.uniquename,
  24197. feature.residues,
  24198. feature.seqlen,
  24199. feature.md5checksum,
  24200. feature.type_id,
  24201. feature.is_analysis,
  24202. feature.is_obsolete,
  24203. feature.timeaccessioned,
  24204. feature.timelastmodified
  24205. FROM (feature
  24206. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24207. WHERE ((cvterm.name)::text = 'lysine'::text);
  24208. --
  24209. -- Name: lysine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  24210. --
  24211. CREATE VIEW lysine_trna_primary_transcript AS
  24212. SELECT feature.feature_id AS lysine_trna_primary_transcript_id,
  24213. feature.feature_id,
  24214. feature.dbxref_id,
  24215. feature.organism_id,
  24216. feature.name,
  24217. feature.uniquename,
  24218. feature.residues,
  24219. feature.seqlen,
  24220. feature.md5checksum,
  24221. feature.type_id,
  24222. feature.is_analysis,
  24223. feature.is_obsolete,
  24224. feature.timeaccessioned,
  24225. feature.timelastmodified
  24226. FROM (feature
  24227. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24228. WHERE ((cvterm.name)::text = 'lysine_tRNA_primary_transcript'::text);
  24229. --
  24230. -- Name: lysosomal_localization_signal; Type: VIEW; Schema: so; Owner: -
  24231. --
  24232. CREATE VIEW lysosomal_localization_signal AS
  24233. SELECT feature.feature_id AS lysosomal_localization_signal_id,
  24234. feature.feature_id,
  24235. feature.dbxref_id,
  24236. feature.organism_id,
  24237. feature.name,
  24238. feature.uniquename,
  24239. feature.residues,
  24240. feature.seqlen,
  24241. feature.md5checksum,
  24242. feature.type_id,
  24243. feature.is_analysis,
  24244. feature.is_obsolete,
  24245. feature.timeaccessioned,
  24246. feature.timelastmodified
  24247. FROM (feature
  24248. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24249. WHERE ((cvterm.name)::text = 'lysosomal_localization_signal'::text);
  24250. --
  24251. -- Name: lysyl_trna; Type: VIEW; Schema: so; Owner: -
  24252. --
  24253. CREATE VIEW lysyl_trna AS
  24254. SELECT feature.feature_id AS lysyl_trna_id,
  24255. feature.feature_id,
  24256. feature.dbxref_id,
  24257. feature.organism_id,
  24258. feature.name,
  24259. feature.uniquename,
  24260. feature.residues,
  24261. feature.seqlen,
  24262. feature.md5checksum,
  24263. feature.type_id,
  24264. feature.is_analysis,
  24265. feature.is_obsolete,
  24266. feature.timeaccessioned,
  24267. feature.timelastmodified
  24268. FROM (feature
  24269. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24270. WHERE ((cvterm.name)::text = 'lysyl_tRNA'::text);
  24271. --
  24272. -- Name: macronuclear_chromosome; Type: VIEW; Schema: so; Owner: -
  24273. --
  24274. CREATE VIEW macronuclear_chromosome AS
  24275. SELECT feature.feature_id AS macronuclear_chromosome_id,
  24276. feature.feature_id,
  24277. feature.dbxref_id,
  24278. feature.organism_id,
  24279. feature.name,
  24280. feature.uniquename,
  24281. feature.residues,
  24282. feature.seqlen,
  24283. feature.md5checksum,
  24284. feature.type_id,
  24285. feature.is_analysis,
  24286. feature.is_obsolete,
  24287. feature.timeaccessioned,
  24288. feature.timelastmodified
  24289. FROM (feature
  24290. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24291. WHERE ((cvterm.name)::text = 'macronuclear_chromosome'::text);
  24292. --
  24293. -- Name: macronuclear_sequence; Type: VIEW; Schema: so; Owner: -
  24294. --
  24295. CREATE VIEW macronuclear_sequence AS
  24296. SELECT feature.feature_id AS macronuclear_sequence_id,
  24297. feature.feature_id,
  24298. feature.dbxref_id,
  24299. feature.organism_id,
  24300. feature.name,
  24301. feature.uniquename,
  24302. feature.residues,
  24303. feature.seqlen,
  24304. feature.md5checksum,
  24305. feature.type_id,
  24306. feature.is_analysis,
  24307. feature.is_obsolete,
  24308. feature.timeaccessioned,
  24309. feature.timelastmodified
  24310. FROM (feature
  24311. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24312. WHERE ((cvterm.name)::text = 'macronuclear_sequence'::text);
  24313. --
  24314. -- Name: macronucleus_destined_segment; Type: VIEW; Schema: so; Owner: -
  24315. --
  24316. CREATE VIEW macronucleus_destined_segment AS
  24317. SELECT feature.feature_id AS macronucleus_destined_segment_id,
  24318. feature.feature_id,
  24319. feature.dbxref_id,
  24320. feature.organism_id,
  24321. feature.name,
  24322. feature.uniquename,
  24323. feature.residues,
  24324. feature.seqlen,
  24325. feature.md5checksum,
  24326. feature.type_id,
  24327. feature.is_analysis,
  24328. feature.is_obsolete,
  24329. feature.timeaccessioned,
  24330. feature.timelastmodified
  24331. FROM (feature
  24332. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24333. WHERE ((cvterm.name)::text = 'macronucleus_destined_segment'::text);
  24334. --
  24335. -- Name: major_tss; Type: VIEW; Schema: so; Owner: -
  24336. --
  24337. CREATE VIEW major_tss AS
  24338. SELECT feature.feature_id AS major_tss_id,
  24339. feature.feature_id,
  24340. feature.dbxref_id,
  24341. feature.organism_id,
  24342. feature.name,
  24343. feature.uniquename,
  24344. feature.residues,
  24345. feature.seqlen,
  24346. feature.md5checksum,
  24347. feature.type_id,
  24348. feature.is_analysis,
  24349. feature.is_obsolete,
  24350. feature.timeaccessioned,
  24351. feature.timelastmodified
  24352. FROM (feature
  24353. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24354. WHERE ((cvterm.name)::text = 'major_TSS'::text);
  24355. --
  24356. -- Name: mannosyl_queuosine; Type: VIEW; Schema: so; Owner: -
  24357. --
  24358. CREATE VIEW mannosyl_queuosine AS
  24359. SELECT feature.feature_id AS mannosyl_queuosine_id,
  24360. feature.feature_id,
  24361. feature.dbxref_id,
  24362. feature.organism_id,
  24363. feature.name,
  24364. feature.uniquename,
  24365. feature.residues,
  24366. feature.seqlen,
  24367. feature.md5checksum,
  24368. feature.type_id,
  24369. feature.is_analysis,
  24370. feature.is_obsolete,
  24371. feature.timeaccessioned,
  24372. feature.timelastmodified
  24373. FROM (feature
  24374. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24375. WHERE ((cvterm.name)::text = 'mannosyl_queuosine'::text);
  24376. --
  24377. -- Name: match; Type: VIEW; Schema: so; Owner: -
  24378. --
  24379. CREATE VIEW match AS
  24380. SELECT feature.feature_id AS match_id,
  24381. feature.feature_id,
  24382. feature.dbxref_id,
  24383. feature.organism_id,
  24384. feature.name,
  24385. feature.uniquename,
  24386. feature.residues,
  24387. feature.seqlen,
  24388. feature.md5checksum,
  24389. feature.type_id,
  24390. feature.is_analysis,
  24391. feature.is_obsolete,
  24392. feature.timeaccessioned,
  24393. feature.timelastmodified
  24394. FROM (feature
  24395. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24396. WHERE ((((((((((((cvterm.name)::text = 'nucleotide_match'::text) OR ((cvterm.name)::text = 'protein_match'::text)) OR ((cvterm.name)::text = 'expressed_sequence_match'::text)) OR ((cvterm.name)::text = 'cross_genome_match'::text)) OR ((cvterm.name)::text = 'translated_nucleotide_match'::text)) OR ((cvterm.name)::text = 'primer_match'::text)) OR ((cvterm.name)::text = 'EST_match'::text)) OR ((cvterm.name)::text = 'cDNA_match'::text)) OR ((cvterm.name)::text = 'UST_match'::text)) OR ((cvterm.name)::text = 'RST_match'::text)) OR ((cvterm.name)::text = 'match'::text));
  24397. --
  24398. -- Name: match_part; Type: VIEW; Schema: so; Owner: -
  24399. --
  24400. CREATE VIEW match_part AS
  24401. SELECT feature.feature_id AS match_part_id,
  24402. feature.feature_id,
  24403. feature.dbxref_id,
  24404. feature.organism_id,
  24405. feature.name,
  24406. feature.uniquename,
  24407. feature.residues,
  24408. feature.seqlen,
  24409. feature.md5checksum,
  24410. feature.type_id,
  24411. feature.is_analysis,
  24412. feature.is_obsolete,
  24413. feature.timeaccessioned,
  24414. feature.timelastmodified
  24415. FROM (feature
  24416. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24417. WHERE ((cvterm.name)::text = 'match_part'::text);
  24418. --
  24419. -- Name: maternal_uniparental_disomy; Type: VIEW; Schema: so; Owner: -
  24420. --
  24421. CREATE VIEW maternal_uniparental_disomy AS
  24422. SELECT feature.feature_id AS maternal_uniparental_disomy_id,
  24423. feature.feature_id,
  24424. feature.dbxref_id,
  24425. feature.organism_id,
  24426. feature.name,
  24427. feature.uniquename,
  24428. feature.residues,
  24429. feature.seqlen,
  24430. feature.md5checksum,
  24431. feature.type_id,
  24432. feature.is_analysis,
  24433. feature.is_obsolete,
  24434. feature.timeaccessioned,
  24435. feature.timelastmodified
  24436. FROM (feature
  24437. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24438. WHERE ((cvterm.name)::text = 'maternal_uniparental_disomy'::text);
  24439. --
  24440. -- Name: maternal_variant; Type: VIEW; Schema: so; Owner: -
  24441. --
  24442. CREATE VIEW maternal_variant AS
  24443. SELECT feature.feature_id AS maternal_variant_id,
  24444. feature.feature_id,
  24445. feature.dbxref_id,
  24446. feature.organism_id,
  24447. feature.name,
  24448. feature.uniquename,
  24449. feature.residues,
  24450. feature.seqlen,
  24451. feature.md5checksum,
  24452. feature.type_id,
  24453. feature.is_analysis,
  24454. feature.is_obsolete,
  24455. feature.timeaccessioned,
  24456. feature.timelastmodified
  24457. FROM (feature
  24458. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24459. WHERE ((cvterm.name)::text = 'maternal_variant'::text);
  24460. --
  24461. -- Name: maternally_imprinted; Type: VIEW; Schema: so; Owner: -
  24462. --
  24463. CREATE VIEW maternally_imprinted AS
  24464. SELECT feature.feature_id AS maternally_imprinted_id,
  24465. feature.feature_id,
  24466. feature.dbxref_id,
  24467. feature.organism_id,
  24468. feature.name,
  24469. feature.uniquename,
  24470. feature.residues,
  24471. feature.seqlen,
  24472. feature.md5checksum,
  24473. feature.type_id,
  24474. feature.is_analysis,
  24475. feature.is_obsolete,
  24476. feature.timeaccessioned,
  24477. feature.timelastmodified
  24478. FROM (feature
  24479. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24480. WHERE ((cvterm.name)::text = 'maternally_imprinted'::text);
  24481. --
  24482. -- Name: maternally_imprinted_gene; Type: VIEW; Schema: so; Owner: -
  24483. --
  24484. CREATE VIEW maternally_imprinted_gene AS
  24485. SELECT feature.feature_id AS maternally_imprinted_gene_id,
  24486. feature.feature_id,
  24487. feature.dbxref_id,
  24488. feature.organism_id,
  24489. feature.name,
  24490. feature.uniquename,
  24491. feature.residues,
  24492. feature.seqlen,
  24493. feature.md5checksum,
  24494. feature.type_id,
  24495. feature.is_analysis,
  24496. feature.is_obsolete,
  24497. feature.timeaccessioned,
  24498. feature.timelastmodified
  24499. FROM (feature
  24500. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24501. WHERE ((cvterm.name)::text = 'maternally_imprinted_gene'::text);
  24502. --
  24503. -- Name: mathematically_defined_repeat; Type: VIEW; Schema: so; Owner: -
  24504. --
  24505. CREATE VIEW mathematically_defined_repeat AS
  24506. SELECT feature.feature_id AS mathematically_defined_repeat_id,
  24507. feature.feature_id,
  24508. feature.dbxref_id,
  24509. feature.organism_id,
  24510. feature.name,
  24511. feature.uniquename,
  24512. feature.residues,
  24513. feature.seqlen,
  24514. feature.md5checksum,
  24515. feature.type_id,
  24516. feature.is_analysis,
  24517. feature.is_obsolete,
  24518. feature.timeaccessioned,
  24519. feature.timelastmodified
  24520. FROM (feature
  24521. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24522. WHERE ((cvterm.name)::text = 'mathematically_defined_repeat'::text);
  24523. --
  24524. -- Name: mating_type_region; Type: VIEW; Schema: so; Owner: -
  24525. --
  24526. CREATE VIEW mating_type_region AS
  24527. SELECT feature.feature_id AS mating_type_region_id,
  24528. feature.feature_id,
  24529. feature.dbxref_id,
  24530. feature.organism_id,
  24531. feature.name,
  24532. feature.uniquename,
  24533. feature.residues,
  24534. feature.seqlen,
  24535. feature.md5checksum,
  24536. feature.type_id,
  24537. feature.is_analysis,
  24538. feature.is_obsolete,
  24539. feature.timeaccessioned,
  24540. feature.timelastmodified
  24541. FROM (feature
  24542. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24543. WHERE ((cvterm.name)::text = 'mating_type_region'::text);
  24544. --
  24545. -- Name: matrix_attachment_site; Type: VIEW; Schema: so; Owner: -
  24546. --
  24547. CREATE VIEW matrix_attachment_site AS
  24548. SELECT feature.feature_id AS matrix_attachment_site_id,
  24549. feature.feature_id,
  24550. feature.dbxref_id,
  24551. feature.organism_id,
  24552. feature.name,
  24553. feature.uniquename,
  24554. feature.residues,
  24555. feature.seqlen,
  24556. feature.md5checksum,
  24557. feature.type_id,
  24558. feature.is_analysis,
  24559. feature.is_obsolete,
  24560. feature.timeaccessioned,
  24561. feature.timelastmodified
  24562. FROM (feature
  24563. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24564. WHERE ((cvterm.name)::text = 'matrix_attachment_site'::text);
  24565. --
  24566. -- Name: mature_mirna_variant; Type: VIEW; Schema: so; Owner: -
  24567. --
  24568. CREATE VIEW mature_mirna_variant AS
  24569. SELECT feature.feature_id AS mature_mirna_variant_id,
  24570. feature.feature_id,
  24571. feature.dbxref_id,
  24572. feature.organism_id,
  24573. feature.name,
  24574. feature.uniquename,
  24575. feature.residues,
  24576. feature.seqlen,
  24577. feature.md5checksum,
  24578. feature.type_id,
  24579. feature.is_analysis,
  24580. feature.is_obsolete,
  24581. feature.timeaccessioned,
  24582. feature.timelastmodified
  24583. FROM (feature
  24584. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24585. WHERE ((cvterm.name)::text = 'mature_miRNA_variant'::text);
  24586. --
  24587. -- Name: mature_protein_region; Type: VIEW; Schema: so; Owner: -
  24588. --
  24589. CREATE VIEW mature_protein_region AS
  24590. SELECT feature.feature_id AS mature_protein_region_id,
  24591. feature.feature_id,
  24592. feature.dbxref_id,
  24593. feature.organism_id,
  24594. feature.name,
  24595. feature.uniquename,
  24596. feature.residues,
  24597. feature.seqlen,
  24598. feature.md5checksum,
  24599. feature.type_id,
  24600. feature.is_analysis,
  24601. feature.is_obsolete,
  24602. feature.timeaccessioned,
  24603. feature.timelastmodified
  24604. FROM (feature
  24605. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24606. WHERE (((cvterm.name)::text = 'active_peptide'::text) OR ((cvterm.name)::text = 'mature_protein_region'::text));
  24607. --
  24608. -- Name: mature_transcript; Type: VIEW; Schema: so; Owner: -
  24609. --
  24610. CREATE VIEW mature_transcript AS
  24611. SELECT feature.feature_id AS mature_transcript_id,
  24612. feature.feature_id,
  24613. feature.dbxref_id,
  24614. feature.organism_id,
  24615. feature.name,
  24616. feature.uniquename,
  24617. feature.residues,
  24618. feature.seqlen,
  24619. feature.md5checksum,
  24620. feature.type_id,
  24621. feature.is_analysis,
  24622. feature.is_obsolete,
  24623. feature.timeaccessioned,
  24624. feature.timelastmodified
  24625. FROM (feature
  24626. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24627. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'mRNA'::text) OR ((cvterm.name)::text = 'ncRNA'::text)) OR ((cvterm.name)::text = 'mRNA_with_frameshift'::text)) OR ((cvterm.name)::text = 'monocistronic_mRNA'::text)) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'exemplar_mRNA'::text)) OR ((cvterm.name)::text = 'capped_mRNA'::text)) OR ((cvterm.name)::text = 'polyadenylated_mRNA'::text)) OR ((cvterm.name)::text = 'trans_spliced_mRNA'::text)) OR ((cvterm.name)::text = 'edited_mRNA'::text)) OR ((cvterm.name)::text = 'consensus_mRNA'::text)) OR ((cvterm.name)::text = 'recoded_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_2_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_codon_redefinition'::text)) OR ((cvterm.name)::text = 'scRNA'::text)) OR ((cvterm.name)::text = 'rRNA'::text)) OR ((cvterm.name)::text = 'tRNA'::text)) OR ((cvterm.name)::text = 'snRNA'::text)) OR ((cvterm.name)::text = 'snoRNA'::text)) OR ((cvterm.name)::text = 'small_regulatory_ncRNA'::text)) OR ((cvterm.name)::text = 'RNase_MRP_RNA'::text)) OR ((cvterm.name)::text = 'RNase_P_RNA'::text)) OR ((cvterm.name)::text = 'telomerase_RNA'::text)) OR ((cvterm.name)::text = 'vault_RNA'::text)) OR ((cvterm.name)::text = 'Y_RNA'::text)) OR ((cvterm.name)::text = 'rasiRNA'::text)) OR ((cvterm.name)::text = 'SRP_RNA'::text)) OR ((cvterm.name)::text = 'guide_RNA'::text)) OR ((cvterm.name)::text = 'antisense_RNA'::text)) OR ((cvterm.name)::text = 'siRNA'::text)) OR ((cvterm.name)::text = 'stRNA'::text)) OR ((cvterm.name)::text = 'class_II_RNA'::text)) OR ((cvterm.name)::text = 'class_I_RNA'::text)) OR ((cvterm.name)::text = 'piRNA'::text)) OR ((cvterm.name)::text = 'lincRNA'::text)) OR ((cvterm.name)::text = 'tasiRNA'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_RNA'::text)) OR ((cvterm.name)::text = 'small_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'large_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'rRNA_18S'::text)) OR ((cvterm.name)::text = 'rRNA_16S'::text)) OR ((cvterm.name)::text = 'rRNA_5_8S'::text)) OR ((cvterm.name)::text = 'rRNA_5S'::text)) OR ((cvterm.name)::text = 'rRNA_28S'::text)) OR ((cvterm.name)::text = 'rRNA_23S'::text)) OR ((cvterm.name)::text = 'rRNA_25S'::text)) OR ((cvterm.name)::text = 'rRNA_21S'::text)) OR ((cvterm.name)::text = 'alanyl_tRNA'::text)) OR ((cvterm.name)::text = 'asparaginyl_tRNA'::text)) OR ((cvterm.name)::text = 'aspartyl_tRNA'::text)) OR ((cvterm.name)::text = 'cysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutaminyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutamyl_tRNA'::text)) OR ((cvterm.name)::text = 'glycyl_tRNA'::text)) OR ((cvterm.name)::text = 'histidyl_tRNA'::text)) OR ((cvterm.name)::text = 'isoleucyl_tRNA'::text)) OR ((cvterm.name)::text = 'leucyl_tRNA'::text)) OR ((cvterm.name)::text = 'lysyl_tRNA'::text)) OR ((cvterm.name)::text = 'methionyl_tRNA'::text)) OR ((cvterm.name)::text = 'phenylalanyl_tRNA'::text)) OR ((cvterm.name)::text = 'prolyl_tRNA'::text)) OR ((cvterm.name)::text = 'seryl_tRNA'::text)) OR ((cvterm.name)::text = 'threonyl_tRNA'::text)) OR ((cvterm.name)::text = 'tryptophanyl_tRNA'::text)) OR ((cvterm.name)::text = 'tyrosyl_tRNA'::text)) OR ((cvterm.name)::text = 'valyl_tRNA'::text)) OR ((cvterm.name)::text = 'pyrrolysyl_tRNA'::text)) OR ((cvterm.name)::text = 'arginyl_tRNA'::text)) OR ((cvterm.name)::text = 'selenocysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'U1_snRNA'::text)) OR ((cvterm.name)::text = 'U2_snRNA'::text)) OR ((cvterm.name)::text = 'U4_snRNA'::text)) OR ((cvterm.name)::text = 'U4atac_snRNA'::text)) OR ((cvterm.name)::text = 'U5_snRNA'::text)) OR ((cvterm.name)::text = 'U6_snRNA'::text)) OR ((cvterm.name)::text = 'U6atac_snRNA'::text)) OR ((cvterm.name)::text = 'U11_snRNA'::text)) OR ((cvterm.name)::text = 'U12_snRNA'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA'::text)) OR ((cvterm.name)::text = 'U14_snoRNA'::text)) OR ((cvterm.name)::text = 'U3_snoRNA'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'pseudouridylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'miRNA'::text)) OR ((cvterm.name)::text = 'RNA_6S'::text)) OR ((cvterm.name)::text = 'CsrB_RsmB_RNA'::text)) OR ((cvterm.name)::text = 'DsrA_RNA'::text)) OR ((cvterm.name)::text = 'OxyS_RNA'::text)) OR ((cvterm.name)::text = 'RprA_RNA'::text)) OR ((cvterm.name)::text = 'RRE_RNA'::text)) OR ((cvterm.name)::text = 'spot_42_RNA'::text)) OR ((cvterm.name)::text = 'tmRNA'::text)) OR ((cvterm.name)::text = 'GcvB_RNA'::text)) OR ((cvterm.name)::text = 'MicF_RNA'::text)) OR ((cvterm.name)::text = 'mature_transcript'::text));
  24628. --
  24629. -- Name: mature_transcript_region; Type: VIEW; Schema: so; Owner: -
  24630. --
  24631. CREATE VIEW mature_transcript_region AS
  24632. SELECT feature.feature_id AS mature_transcript_region_id,
  24633. feature.feature_id,
  24634. feature.dbxref_id,
  24635. feature.organism_id,
  24636. feature.name,
  24637. feature.uniquename,
  24638. feature.residues,
  24639. feature.seqlen,
  24640. feature.md5checksum,
  24641. feature.type_id,
  24642. feature.is_analysis,
  24643. feature.is_obsolete,
  24644. feature.timeaccessioned,
  24645. feature.timelastmodified
  24646. FROM (feature
  24647. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24648. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'mRNA_region'::text) OR ((cvterm.name)::text = 'tmRNA_region'::text)) OR ((cvterm.name)::text = 'guide_RNA_region'::text)) OR ((cvterm.name)::text = 'tRNA_region'::text)) OR ((cvterm.name)::text = 'riboswitch'::text)) OR ((cvterm.name)::text = 'ribosome_entry_site'::text)) OR ((cvterm.name)::text = 'UTR'::text)) OR ((cvterm.name)::text = 'CDS'::text)) OR ((cvterm.name)::text = 'five_prime_open_reading_frame'::text)) OR ((cvterm.name)::text = 'UTR_region'::text)) OR ((cvterm.name)::text = 'CDS_region'::text)) OR ((cvterm.name)::text = 'translational_frameshift'::text)) OR ((cvterm.name)::text = 'recoding_stimulatory_region'::text)) OR ((cvterm.name)::text = 'internal_ribosome_entry_site'::text)) OR ((cvterm.name)::text = 'Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'kozak_sequence'::text)) OR ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'five_prime_UTR'::text)) OR ((cvterm.name)::text = 'three_prime_UTR'::text)) OR ((cvterm.name)::text = 'internal_UTR'::text)) OR ((cvterm.name)::text = 'untranslated_region_polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'edited_CDS'::text)) OR ((cvterm.name)::text = 'CDS_fragment'::text)) OR ((cvterm.name)::text = 'CDS_independently_known'::text)) OR ((cvterm.name)::text = 'CDS_predicted'::text)) OR ((cvterm.name)::text = 'orphan_CDS'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_sequence_similarity_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_domain_match_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_EST_or_cDNA_data'::text)) OR ((cvterm.name)::text = 'upstream_AUG_codon'::text)) OR ((cvterm.name)::text = 'AU_rich_element'::text)) OR ((cvterm.name)::text = 'Bruno_response_element'::text)) OR ((cvterm.name)::text = 'iron_responsive_element'::text)) OR ((cvterm.name)::text = 'coding_start'::text)) OR ((cvterm.name)::text = 'coding_end'::text)) OR ((cvterm.name)::text = 'codon'::text)) OR ((cvterm.name)::text = 'recoded_codon'::text)) OR ((cvterm.name)::text = 'start_codon'::text)) OR ((cvterm.name)::text = 'stop_codon'::text)) OR ((cvterm.name)::text = 'stop_codon_read_through'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'non_canonical_start_codon'::text)) OR ((cvterm.name)::text = 'four_bp_start_codon'::text)) OR ((cvterm.name)::text = 'CTG_start_codon'::text)) OR ((cvterm.name)::text = 'plus_1_translational_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_translational_frameshift'::text)) OR ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'SECIS_element'::text)) OR ((cvterm.name)::text = 'three_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'five_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'stop_codon_signal'::text)) OR ((cvterm.name)::text = 'three_prime_stem_loop_structure'::text)) OR ((cvterm.name)::text = 'flanking_three_prime_quadruplet_recoding_signal'::text)) OR ((cvterm.name)::text = 'three_prime_repeat_recoding_signal'::text)) OR ((cvterm.name)::text = 'distant_three_prime_recoding_signal'::text)) OR ((cvterm.name)::text = 'UAG_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UAA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UGA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'tmRNA_coding_piece'::text)) OR ((cvterm.name)::text = 'tmRNA_acceptor_piece'::text)) OR ((cvterm.name)::text = 'anchor_region'::text)) OR ((cvterm.name)::text = 'template_region'::text)) OR ((cvterm.name)::text = 'anticodon_loop'::text)) OR ((cvterm.name)::text = 'anticodon'::text)) OR ((cvterm.name)::text = 'CCA_tail'::text)) OR ((cvterm.name)::text = 'DHU_loop'::text)) OR ((cvterm.name)::text = 'T_loop'::text)) OR ((cvterm.name)::text = 'mature_transcript_region'::text));
  24649. --
  24650. -- Name: maxicircle; Type: VIEW; Schema: so; Owner: -
  24651. --
  24652. CREATE VIEW maxicircle AS
  24653. SELECT feature.feature_id AS maxicircle_id,
  24654. feature.feature_id,
  24655. feature.dbxref_id,
  24656. feature.organism_id,
  24657. feature.name,
  24658. feature.uniquename,
  24659. feature.residues,
  24660. feature.seqlen,
  24661. feature.md5checksum,
  24662. feature.type_id,
  24663. feature.is_analysis,
  24664. feature.is_obsolete,
  24665. feature.timeaccessioned,
  24666. feature.timelastmodified
  24667. FROM (feature
  24668. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24669. WHERE ((cvterm.name)::text = 'maxicircle'::text);
  24670. --
  24671. -- Name: maxicircle_gene; Type: VIEW; Schema: so; Owner: -
  24672. --
  24673. CREATE VIEW maxicircle_gene AS
  24674. SELECT feature.feature_id AS maxicircle_gene_id,
  24675. feature.feature_id,
  24676. feature.dbxref_id,
  24677. feature.organism_id,
  24678. feature.name,
  24679. feature.uniquename,
  24680. feature.residues,
  24681. feature.seqlen,
  24682. feature.md5checksum,
  24683. feature.type_id,
  24684. feature.is_analysis,
  24685. feature.is_obsolete,
  24686. feature.timeaccessioned,
  24687. feature.timelastmodified
  24688. FROM (feature
  24689. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24690. WHERE (((cvterm.name)::text = 'cryptogene'::text) OR ((cvterm.name)::text = 'maxicircle_gene'::text));
  24691. --
  24692. -- Name: member_of_regulon; Type: VIEW; Schema: so; Owner: -
  24693. --
  24694. CREATE VIEW member_of_regulon AS
  24695. SELECT feature.feature_id AS member_of_regulon_id,
  24696. feature.feature_id,
  24697. feature.dbxref_id,
  24698. feature.organism_id,
  24699. feature.name,
  24700. feature.uniquename,
  24701. feature.residues,
  24702. feature.seqlen,
  24703. feature.md5checksum,
  24704. feature.type_id,
  24705. feature.is_analysis,
  24706. feature.is_obsolete,
  24707. feature.timeaccessioned,
  24708. feature.timelastmodified
  24709. FROM (feature
  24710. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24711. WHERE ((cvterm.name)::text = 'member_of_regulon'::text);
  24712. --
  24713. -- Name: membrane_peptide_loop; Type: VIEW; Schema: so; Owner: -
  24714. --
  24715. CREATE VIEW membrane_peptide_loop AS
  24716. SELECT feature.feature_id AS membrane_peptide_loop_id,
  24717. feature.feature_id,
  24718. feature.dbxref_id,
  24719. feature.organism_id,
  24720. feature.name,
  24721. feature.uniquename,
  24722. feature.residues,
  24723. feature.seqlen,
  24724. feature.md5checksum,
  24725. feature.type_id,
  24726. feature.is_analysis,
  24727. feature.is_obsolete,
  24728. feature.timeaccessioned,
  24729. feature.timelastmodified
  24730. FROM (feature
  24731. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24732. WHERE ((cvterm.name)::text = 'membrane_peptide_loop'::text);
  24733. --
  24734. -- Name: membrane_structure; Type: VIEW; Schema: so; Owner: -
  24735. --
  24736. CREATE VIEW membrane_structure AS
  24737. SELECT feature.feature_id AS membrane_structure_id,
  24738. feature.feature_id,
  24739. feature.dbxref_id,
  24740. feature.organism_id,
  24741. feature.name,
  24742. feature.uniquename,
  24743. feature.residues,
  24744. feature.seqlen,
  24745. feature.md5checksum,
  24746. feature.type_id,
  24747. feature.is_analysis,
  24748. feature.is_obsolete,
  24749. feature.timeaccessioned,
  24750. feature.timelastmodified
  24751. FROM (feature
  24752. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24753. WHERE ((cvterm.name)::text = 'membrane_structure'::text);
  24754. --
  24755. -- Name: metabolic_island; Type: VIEW; Schema: so; Owner: -
  24756. --
  24757. CREATE VIEW metabolic_island AS
  24758. SELECT feature.feature_id AS metabolic_island_id,
  24759. feature.feature_id,
  24760. feature.dbxref_id,
  24761. feature.organism_id,
  24762. feature.name,
  24763. feature.uniquename,
  24764. feature.residues,
  24765. feature.seqlen,
  24766. feature.md5checksum,
  24767. feature.type_id,
  24768. feature.is_analysis,
  24769. feature.is_obsolete,
  24770. feature.timeaccessioned,
  24771. feature.timelastmodified
  24772. FROM (feature
  24773. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24774. WHERE ((cvterm.name)::text = 'metabolic_island'::text);
  24775. --
  24776. -- Name: metal_binding_site; Type: VIEW; Schema: so; Owner: -
  24777. --
  24778. CREATE VIEW metal_binding_site AS
  24779. SELECT feature.feature_id AS metal_binding_site_id,
  24780. feature.feature_id,
  24781. feature.dbxref_id,
  24782. feature.organism_id,
  24783. feature.name,
  24784. feature.uniquename,
  24785. feature.residues,
  24786. feature.seqlen,
  24787. feature.md5checksum,
  24788. feature.type_id,
  24789. feature.is_analysis,
  24790. feature.is_obsolete,
  24791. feature.timeaccessioned,
  24792. feature.timelastmodified
  24793. FROM (feature
  24794. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24795. WHERE (((((((((((((cvterm.name)::text = 'polypeptide_metal_contact'::text) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'metal_binding_site'::text));
  24796. --
  24797. -- Name: methionine; Type: VIEW; Schema: so; Owner: -
  24798. --
  24799. CREATE VIEW methionine AS
  24800. SELECT feature.feature_id AS methionine_id,
  24801. feature.feature_id,
  24802. feature.dbxref_id,
  24803. feature.organism_id,
  24804. feature.name,
  24805. feature.uniquename,
  24806. feature.residues,
  24807. feature.seqlen,
  24808. feature.md5checksum,
  24809. feature.type_id,
  24810. feature.is_analysis,
  24811. feature.is_obsolete,
  24812. feature.timeaccessioned,
  24813. feature.timelastmodified
  24814. FROM (feature
  24815. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24816. WHERE ((cvterm.name)::text = 'methionine'::text);
  24817. --
  24818. -- Name: methionine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  24819. --
  24820. CREATE VIEW methionine_trna_primary_transcript AS
  24821. SELECT feature.feature_id AS methionine_trna_primary_transcript_id,
  24822. feature.feature_id,
  24823. feature.dbxref_id,
  24824. feature.organism_id,
  24825. feature.name,
  24826. feature.uniquename,
  24827. feature.residues,
  24828. feature.seqlen,
  24829. feature.md5checksum,
  24830. feature.type_id,
  24831. feature.is_analysis,
  24832. feature.is_obsolete,
  24833. feature.timeaccessioned,
  24834. feature.timelastmodified
  24835. FROM (feature
  24836. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24837. WHERE ((cvterm.name)::text = 'methionine_tRNA_primary_transcript'::text);
  24838. --
  24839. -- Name: methionyl_trna; Type: VIEW; Schema: so; Owner: -
  24840. --
  24841. CREATE VIEW methionyl_trna AS
  24842. SELECT feature.feature_id AS methionyl_trna_id,
  24843. feature.feature_id,
  24844. feature.dbxref_id,
  24845. feature.organism_id,
  24846. feature.name,
  24847. feature.uniquename,
  24848. feature.residues,
  24849. feature.seqlen,
  24850. feature.md5checksum,
  24851. feature.type_id,
  24852. feature.is_analysis,
  24853. feature.is_obsolete,
  24854. feature.timeaccessioned,
  24855. feature.timelastmodified
  24856. FROM (feature
  24857. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24858. WHERE ((cvterm.name)::text = 'methionyl_tRNA'::text);
  24859. --
  24860. -- Name: methylated_a; Type: VIEW; Schema: so; Owner: -
  24861. --
  24862. CREATE VIEW methylated_a AS
  24863. SELECT feature.feature_id AS methylated_a_id,
  24864. feature.feature_id,
  24865. feature.dbxref_id,
  24866. feature.organism_id,
  24867. feature.name,
  24868. feature.uniquename,
  24869. feature.residues,
  24870. feature.seqlen,
  24871. feature.md5checksum,
  24872. feature.type_id,
  24873. feature.is_analysis,
  24874. feature.is_obsolete,
  24875. feature.timeaccessioned,
  24876. feature.timelastmodified
  24877. FROM (feature
  24878. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24879. WHERE ((cvterm.name)::text = 'methylated_A'::text);
  24880. --
  24881. -- Name: methylated_base_feature; Type: VIEW; Schema: so; Owner: -
  24882. --
  24883. CREATE VIEW methylated_base_feature AS
  24884. SELECT feature.feature_id AS methylated_base_feature_id,
  24885. feature.feature_id,
  24886. feature.dbxref_id,
  24887. feature.organism_id,
  24888. feature.name,
  24889. feature.uniquename,
  24890. feature.residues,
  24891. feature.seqlen,
  24892. feature.md5checksum,
  24893. feature.type_id,
  24894. feature.is_analysis,
  24895. feature.is_obsolete,
  24896. feature.timeaccessioned,
  24897. feature.timelastmodified
  24898. FROM (feature
  24899. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24900. WHERE ((((cvterm.name)::text = 'methylated_C'::text) OR ((cvterm.name)::text = 'methylated_A'::text)) OR ((cvterm.name)::text = 'methylated_base_feature'::text));
  24901. --
  24902. -- Name: methylated_c; Type: VIEW; Schema: so; Owner: -
  24903. --
  24904. CREATE VIEW methylated_c AS
  24905. SELECT feature.feature_id AS methylated_c_id,
  24906. feature.feature_id,
  24907. feature.dbxref_id,
  24908. feature.organism_id,
  24909. feature.name,
  24910. feature.uniquename,
  24911. feature.residues,
  24912. feature.seqlen,
  24913. feature.md5checksum,
  24914. feature.type_id,
  24915. feature.is_analysis,
  24916. feature.is_obsolete,
  24917. feature.timeaccessioned,
  24918. feature.timelastmodified
  24919. FROM (feature
  24920. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24921. WHERE ((cvterm.name)::text = 'methylated_C'::text);
  24922. --
  24923. -- Name: methylation_guide_snorna; Type: VIEW; Schema: so; Owner: -
  24924. --
  24925. CREATE VIEW methylation_guide_snorna AS
  24926. SELECT feature.feature_id AS methylation_guide_snorna_id,
  24927. feature.feature_id,
  24928. feature.dbxref_id,
  24929. feature.organism_id,
  24930. feature.name,
  24931. feature.uniquename,
  24932. feature.residues,
  24933. feature.seqlen,
  24934. feature.md5checksum,
  24935. feature.type_id,
  24936. feature.is_analysis,
  24937. feature.is_obsolete,
  24938. feature.timeaccessioned,
  24939. feature.timelastmodified
  24940. FROM (feature
  24941. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24942. WHERE ((cvterm.name)::text = 'methylation_guide_snoRNA'::text);
  24943. --
  24944. -- Name: methylation_guide_snorna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  24945. --
  24946. CREATE VIEW methylation_guide_snorna_primary_transcript AS
  24947. SELECT feature.feature_id AS methylation_guide_snorna_primary_transcript_id,
  24948. feature.feature_id,
  24949. feature.dbxref_id,
  24950. feature.organism_id,
  24951. feature.name,
  24952. feature.uniquename,
  24953. feature.residues,
  24954. feature.seqlen,
  24955. feature.md5checksum,
  24956. feature.type_id,
  24957. feature.is_analysis,
  24958. feature.is_obsolete,
  24959. feature.timeaccessioned,
  24960. feature.timelastmodified
  24961. FROM (feature
  24962. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24963. WHERE ((cvterm.name)::text = 'methylation_guide_snoRNA_primary_transcript'::text);
  24964. --
  24965. -- Name: methylinosine; Type: VIEW; Schema: so; Owner: -
  24966. --
  24967. CREATE VIEW methylinosine AS
  24968. SELECT feature.feature_id AS methylinosine_id,
  24969. feature.feature_id,
  24970. feature.dbxref_id,
  24971. feature.organism_id,
  24972. feature.name,
  24973. feature.uniquename,
  24974. feature.residues,
  24975. feature.seqlen,
  24976. feature.md5checksum,
  24977. feature.type_id,
  24978. feature.is_analysis,
  24979. feature.is_obsolete,
  24980. feature.timeaccessioned,
  24981. feature.timelastmodified
  24982. FROM (feature
  24983. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  24984. WHERE ((cvterm.name)::text = 'methylinosine'::text);
  24985. --
  24986. -- Name: methylwyosine; Type: VIEW; Schema: so; Owner: -
  24987. --
  24988. CREATE VIEW methylwyosine AS
  24989. SELECT feature.feature_id AS methylwyosine_id,
  24990. feature.feature_id,
  24991. feature.dbxref_id,
  24992. feature.organism_id,
  24993. feature.name,
  24994. feature.uniquename,
  24995. feature.residues,
  24996. feature.seqlen,
  24997. feature.md5checksum,
  24998. feature.type_id,
  24999. feature.is_analysis,
  25000. feature.is_obsolete,
  25001. feature.timeaccessioned,
  25002. feature.timelastmodified
  25003. FROM (feature
  25004. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25005. WHERE ((cvterm.name)::text = 'methylwyosine'::text);
  25006. --
  25007. -- Name: micf_rna; Type: VIEW; Schema: so; Owner: -
  25008. --
  25009. CREATE VIEW micf_rna AS
  25010. SELECT feature.feature_id AS micf_rna_id,
  25011. feature.feature_id,
  25012. feature.dbxref_id,
  25013. feature.organism_id,
  25014. feature.name,
  25015. feature.uniquename,
  25016. feature.residues,
  25017. feature.seqlen,
  25018. feature.md5checksum,
  25019. feature.type_id,
  25020. feature.is_analysis,
  25021. feature.is_obsolete,
  25022. feature.timeaccessioned,
  25023. feature.timelastmodified
  25024. FROM (feature
  25025. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25026. WHERE ((cvterm.name)::text = 'MicF_RNA'::text);
  25027. --
  25028. -- Name: microarray_oligo; Type: VIEW; Schema: so; Owner: -
  25029. --
  25030. CREATE VIEW microarray_oligo AS
  25031. SELECT feature.feature_id AS microarray_oligo_id,
  25032. feature.feature_id,
  25033. feature.dbxref_id,
  25034. feature.organism_id,
  25035. feature.name,
  25036. feature.uniquename,
  25037. feature.residues,
  25038. feature.seqlen,
  25039. feature.md5checksum,
  25040. feature.type_id,
  25041. feature.is_analysis,
  25042. feature.is_obsolete,
  25043. feature.timeaccessioned,
  25044. feature.timelastmodified
  25045. FROM (feature
  25046. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25047. WHERE ((cvterm.name)::text = 'microarray_oligo'::text);
  25048. --
  25049. -- Name: micronuclear_chromosome; Type: VIEW; Schema: so; Owner: -
  25050. --
  25051. CREATE VIEW micronuclear_chromosome AS
  25052. SELECT feature.feature_id AS micronuclear_chromosome_id,
  25053. feature.feature_id,
  25054. feature.dbxref_id,
  25055. feature.organism_id,
  25056. feature.name,
  25057. feature.uniquename,
  25058. feature.residues,
  25059. feature.seqlen,
  25060. feature.md5checksum,
  25061. feature.type_id,
  25062. feature.is_analysis,
  25063. feature.is_obsolete,
  25064. feature.timeaccessioned,
  25065. feature.timelastmodified
  25066. FROM (feature
  25067. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25068. WHERE ((cvterm.name)::text = 'micronuclear_chromosome'::text);
  25069. --
  25070. -- Name: micronuclear_sequence; Type: VIEW; Schema: so; Owner: -
  25071. --
  25072. CREATE VIEW micronuclear_sequence AS
  25073. SELECT feature.feature_id AS micronuclear_sequence_id,
  25074. feature.feature_id,
  25075. feature.dbxref_id,
  25076. feature.organism_id,
  25077. feature.name,
  25078. feature.uniquename,
  25079. feature.residues,
  25080. feature.seqlen,
  25081. feature.md5checksum,
  25082. feature.type_id,
  25083. feature.is_analysis,
  25084. feature.is_obsolete,
  25085. feature.timeaccessioned,
  25086. feature.timelastmodified
  25087. FROM (feature
  25088. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25089. WHERE ((cvterm.name)::text = 'micronuclear_sequence'::text);
  25090. --
  25091. -- Name: microsatellite; Type: VIEW; Schema: so; Owner: -
  25092. --
  25093. CREATE VIEW microsatellite AS
  25094. SELECT feature.feature_id AS microsatellite_id,
  25095. feature.feature_id,
  25096. feature.dbxref_id,
  25097. feature.organism_id,
  25098. feature.name,
  25099. feature.uniquename,
  25100. feature.residues,
  25101. feature.seqlen,
  25102. feature.md5checksum,
  25103. feature.type_id,
  25104. feature.is_analysis,
  25105. feature.is_obsolete,
  25106. feature.timeaccessioned,
  25107. feature.timelastmodified
  25108. FROM (feature
  25109. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25110. WHERE (((((cvterm.name)::text = 'dinucleotide_repeat_microsatellite_feature'::text) OR ((cvterm.name)::text = 'trinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'tetranucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'microsatellite'::text));
  25111. --
  25112. -- Name: mini_exon_donor_rna; Type: VIEW; Schema: so; Owner: -
  25113. --
  25114. CREATE VIEW mini_exon_donor_rna AS
  25115. SELECT feature.feature_id AS mini_exon_donor_rna_id,
  25116. feature.feature_id,
  25117. feature.dbxref_id,
  25118. feature.organism_id,
  25119. feature.name,
  25120. feature.uniquename,
  25121. feature.residues,
  25122. feature.seqlen,
  25123. feature.md5checksum,
  25124. feature.type_id,
  25125. feature.is_analysis,
  25126. feature.is_obsolete,
  25127. feature.timeaccessioned,
  25128. feature.timelastmodified
  25129. FROM (feature
  25130. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25131. WHERE ((cvterm.name)::text = 'mini_exon_donor_RNA'::text);
  25132. --
  25133. -- Name: mini_gene; Type: VIEW; Schema: so; Owner: -
  25134. --
  25135. CREATE VIEW mini_gene AS
  25136. SELECT feature.feature_id AS mini_gene_id,
  25137. feature.feature_id,
  25138. feature.dbxref_id,
  25139. feature.organism_id,
  25140. feature.name,
  25141. feature.uniquename,
  25142. feature.residues,
  25143. feature.seqlen,
  25144. feature.md5checksum,
  25145. feature.type_id,
  25146. feature.is_analysis,
  25147. feature.is_obsolete,
  25148. feature.timeaccessioned,
  25149. feature.timelastmodified
  25150. FROM (feature
  25151. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25152. WHERE (((cvterm.name)::text = 'rescue_mini_gene'::text) OR ((cvterm.name)::text = 'mini_gene'::text));
  25153. --
  25154. -- Name: minicircle; Type: VIEW; Schema: so; Owner: -
  25155. --
  25156. CREATE VIEW minicircle AS
  25157. SELECT feature.feature_id AS minicircle_id,
  25158. feature.feature_id,
  25159. feature.dbxref_id,
  25160. feature.organism_id,
  25161. feature.name,
  25162. feature.uniquename,
  25163. feature.residues,
  25164. feature.seqlen,
  25165. feature.md5checksum,
  25166. feature.type_id,
  25167. feature.is_analysis,
  25168. feature.is_obsolete,
  25169. feature.timeaccessioned,
  25170. feature.timelastmodified
  25171. FROM (feature
  25172. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25173. WHERE ((cvterm.name)::text = 'minicircle'::text);
  25174. --
  25175. -- Name: minicircle_gene; Type: VIEW; Schema: so; Owner: -
  25176. --
  25177. CREATE VIEW minicircle_gene AS
  25178. SELECT feature.feature_id AS minicircle_gene_id,
  25179. feature.feature_id,
  25180. feature.dbxref_id,
  25181. feature.organism_id,
  25182. feature.name,
  25183. feature.uniquename,
  25184. feature.residues,
  25185. feature.seqlen,
  25186. feature.md5checksum,
  25187. feature.type_id,
  25188. feature.is_analysis,
  25189. feature.is_obsolete,
  25190. feature.timeaccessioned,
  25191. feature.timelastmodified
  25192. FROM (feature
  25193. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25194. WHERE ((cvterm.name)::text = 'minicircle_gene'::text);
  25195. --
  25196. -- Name: minisatellite; Type: VIEW; Schema: so; Owner: -
  25197. --
  25198. CREATE VIEW minisatellite AS
  25199. SELECT feature.feature_id AS minisatellite_id,
  25200. feature.feature_id,
  25201. feature.dbxref_id,
  25202. feature.organism_id,
  25203. feature.name,
  25204. feature.uniquename,
  25205. feature.residues,
  25206. feature.seqlen,
  25207. feature.md5checksum,
  25208. feature.type_id,
  25209. feature.is_analysis,
  25210. feature.is_obsolete,
  25211. feature.timeaccessioned,
  25212. feature.timelastmodified
  25213. FROM (feature
  25214. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25215. WHERE ((cvterm.name)::text = 'minisatellite'::text);
  25216. --
  25217. -- Name: minor_tss; Type: VIEW; Schema: so; Owner: -
  25218. --
  25219. CREATE VIEW minor_tss AS
  25220. SELECT feature.feature_id AS minor_tss_id,
  25221. feature.feature_id,
  25222. feature.dbxref_id,
  25223. feature.organism_id,
  25224. feature.name,
  25225. feature.uniquename,
  25226. feature.residues,
  25227. feature.seqlen,
  25228. feature.md5checksum,
  25229. feature.type_id,
  25230. feature.is_analysis,
  25231. feature.is_obsolete,
  25232. feature.timeaccessioned,
  25233. feature.timelastmodified
  25234. FROM (feature
  25235. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25236. WHERE ((cvterm.name)::text = 'minor_TSS'::text);
  25237. --
  25238. -- Name: minus_10_signal; Type: VIEW; Schema: so; Owner: -
  25239. --
  25240. CREATE VIEW minus_10_signal AS
  25241. SELECT feature.feature_id AS minus_10_signal_id,
  25242. feature.feature_id,
  25243. feature.dbxref_id,
  25244. feature.organism_id,
  25245. feature.name,
  25246. feature.uniquename,
  25247. feature.residues,
  25248. feature.seqlen,
  25249. feature.md5checksum,
  25250. feature.type_id,
  25251. feature.is_analysis,
  25252. feature.is_obsolete,
  25253. feature.timeaccessioned,
  25254. feature.timelastmodified
  25255. FROM (feature
  25256. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25257. WHERE ((cvterm.name)::text = 'minus_10_signal'::text);
  25258. --
  25259. -- Name: minus_12_signal; Type: VIEW; Schema: so; Owner: -
  25260. --
  25261. CREATE VIEW minus_12_signal AS
  25262. SELECT feature.feature_id AS minus_12_signal_id,
  25263. feature.feature_id,
  25264. feature.dbxref_id,
  25265. feature.organism_id,
  25266. feature.name,
  25267. feature.uniquename,
  25268. feature.residues,
  25269. feature.seqlen,
  25270. feature.md5checksum,
  25271. feature.type_id,
  25272. feature.is_analysis,
  25273. feature.is_obsolete,
  25274. feature.timeaccessioned,
  25275. feature.timelastmodified
  25276. FROM (feature
  25277. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25278. WHERE ((cvterm.name)::text = 'minus_12_signal'::text);
  25279. --
  25280. -- Name: minus_1_frameshift; Type: VIEW; Schema: so; Owner: -
  25281. --
  25282. CREATE VIEW minus_1_frameshift AS
  25283. SELECT feature.feature_id AS minus_1_frameshift_id,
  25284. feature.feature_id,
  25285. feature.dbxref_id,
  25286. feature.organism_id,
  25287. feature.name,
  25288. feature.uniquename,
  25289. feature.residues,
  25290. feature.seqlen,
  25291. feature.md5checksum,
  25292. feature.type_id,
  25293. feature.is_analysis,
  25294. feature.is_obsolete,
  25295. feature.timeaccessioned,
  25296. feature.timelastmodified
  25297. FROM (feature
  25298. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25299. WHERE ((cvterm.name)::text = 'minus_1_frameshift'::text);
  25300. --
  25301. -- Name: minus_1_frameshift_variant; Type: VIEW; Schema: so; Owner: -
  25302. --
  25303. CREATE VIEW minus_1_frameshift_variant AS
  25304. SELECT feature.feature_id AS minus_1_frameshift_variant_id,
  25305. feature.feature_id,
  25306. feature.dbxref_id,
  25307. feature.organism_id,
  25308. feature.name,
  25309. feature.uniquename,
  25310. feature.residues,
  25311. feature.seqlen,
  25312. feature.md5checksum,
  25313. feature.type_id,
  25314. feature.is_analysis,
  25315. feature.is_obsolete,
  25316. feature.timeaccessioned,
  25317. feature.timelastmodified
  25318. FROM (feature
  25319. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25320. WHERE ((cvterm.name)::text = 'minus_1_frameshift_variant'::text);
  25321. --
  25322. -- Name: minus_1_translationally_frameshifted; Type: VIEW; Schema: so; Owner: -
  25323. --
  25324. CREATE VIEW minus_1_translationally_frameshifted AS
  25325. SELECT feature.feature_id AS minus_1_translationally_frameshifted_id,
  25326. feature.feature_id,
  25327. feature.dbxref_id,
  25328. feature.organism_id,
  25329. feature.name,
  25330. feature.uniquename,
  25331. feature.residues,
  25332. feature.seqlen,
  25333. feature.md5checksum,
  25334. feature.type_id,
  25335. feature.is_analysis,
  25336. feature.is_obsolete,
  25337. feature.timeaccessioned,
  25338. feature.timelastmodified
  25339. FROM (feature
  25340. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25341. WHERE ((cvterm.name)::text = 'minus_1_translationally_frameshifted'::text);
  25342. --
  25343. -- Name: minus_24_signal; Type: VIEW; Schema: so; Owner: -
  25344. --
  25345. CREATE VIEW minus_24_signal AS
  25346. SELECT feature.feature_id AS minus_24_signal_id,
  25347. feature.feature_id,
  25348. feature.dbxref_id,
  25349. feature.organism_id,
  25350. feature.name,
  25351. feature.uniquename,
  25352. feature.residues,
  25353. feature.seqlen,
  25354. feature.md5checksum,
  25355. feature.type_id,
  25356. feature.is_analysis,
  25357. feature.is_obsolete,
  25358. feature.timeaccessioned,
  25359. feature.timelastmodified
  25360. FROM (feature
  25361. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25362. WHERE ((cvterm.name)::text = 'minus_24_signal'::text);
  25363. --
  25364. -- Name: minus_2_frameshift; Type: VIEW; Schema: so; Owner: -
  25365. --
  25366. CREATE VIEW minus_2_frameshift AS
  25367. SELECT feature.feature_id AS minus_2_frameshift_id,
  25368. feature.feature_id,
  25369. feature.dbxref_id,
  25370. feature.organism_id,
  25371. feature.name,
  25372. feature.uniquename,
  25373. feature.residues,
  25374. feature.seqlen,
  25375. feature.md5checksum,
  25376. feature.type_id,
  25377. feature.is_analysis,
  25378. feature.is_obsolete,
  25379. feature.timeaccessioned,
  25380. feature.timelastmodified
  25381. FROM (feature
  25382. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25383. WHERE ((cvterm.name)::text = 'minus_2_frameshift'::text);
  25384. --
  25385. -- Name: minus_2_frameshift_variant; Type: VIEW; Schema: so; Owner: -
  25386. --
  25387. CREATE VIEW minus_2_frameshift_variant AS
  25388. SELECT feature.feature_id AS minus_2_frameshift_variant_id,
  25389. feature.feature_id,
  25390. feature.dbxref_id,
  25391. feature.organism_id,
  25392. feature.name,
  25393. feature.uniquename,
  25394. feature.residues,
  25395. feature.seqlen,
  25396. feature.md5checksum,
  25397. feature.type_id,
  25398. feature.is_analysis,
  25399. feature.is_obsolete,
  25400. feature.timeaccessioned,
  25401. feature.timelastmodified
  25402. FROM (feature
  25403. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25404. WHERE ((cvterm.name)::text = 'minus_2_frameshift_variant'::text);
  25405. --
  25406. -- Name: minus_35_signal; Type: VIEW; Schema: so; Owner: -
  25407. --
  25408. CREATE VIEW minus_35_signal AS
  25409. SELECT feature.feature_id AS minus_35_signal_id,
  25410. feature.feature_id,
  25411. feature.dbxref_id,
  25412. feature.organism_id,
  25413. feature.name,
  25414. feature.uniquename,
  25415. feature.residues,
  25416. feature.seqlen,
  25417. feature.md5checksum,
  25418. feature.type_id,
  25419. feature.is_analysis,
  25420. feature.is_obsolete,
  25421. feature.timeaccessioned,
  25422. feature.timelastmodified
  25423. FROM (feature
  25424. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25425. WHERE ((cvterm.name)::text = 'minus_35_signal'::text);
  25426. --
  25427. -- Name: mirna; Type: VIEW; Schema: so; Owner: -
  25428. --
  25429. CREATE VIEW mirna AS
  25430. SELECT feature.feature_id AS mirna_id,
  25431. feature.feature_id,
  25432. feature.dbxref_id,
  25433. feature.organism_id,
  25434. feature.name,
  25435. feature.uniquename,
  25436. feature.residues,
  25437. feature.seqlen,
  25438. feature.md5checksum,
  25439. feature.type_id,
  25440. feature.is_analysis,
  25441. feature.is_obsolete,
  25442. feature.timeaccessioned,
  25443. feature.timelastmodified
  25444. FROM (feature
  25445. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25446. WHERE ((cvterm.name)::text = 'miRNA'::text);
  25447. --
  25448. -- Name: mirna_antiguide; Type: VIEW; Schema: so; Owner: -
  25449. --
  25450. CREATE VIEW mirna_antiguide AS
  25451. SELECT feature.feature_id AS mirna_antiguide_id,
  25452. feature.feature_id,
  25453. feature.dbxref_id,
  25454. feature.organism_id,
  25455. feature.name,
  25456. feature.uniquename,
  25457. feature.residues,
  25458. feature.seqlen,
  25459. feature.md5checksum,
  25460. feature.type_id,
  25461. feature.is_analysis,
  25462. feature.is_obsolete,
  25463. feature.timeaccessioned,
  25464. feature.timelastmodified
  25465. FROM (feature
  25466. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25467. WHERE ((cvterm.name)::text = 'miRNA_antiguide'::text);
  25468. --
  25469. -- Name: mirna_encoding; Type: VIEW; Schema: so; Owner: -
  25470. --
  25471. CREATE VIEW mirna_encoding AS
  25472. SELECT feature.feature_id AS mirna_encoding_id,
  25473. feature.feature_id,
  25474. feature.dbxref_id,
  25475. feature.organism_id,
  25476. feature.name,
  25477. feature.uniquename,
  25478. feature.residues,
  25479. feature.seqlen,
  25480. feature.md5checksum,
  25481. feature.type_id,
  25482. feature.is_analysis,
  25483. feature.is_obsolete,
  25484. feature.timeaccessioned,
  25485. feature.timelastmodified
  25486. FROM (feature
  25487. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25488. WHERE ((cvterm.name)::text = 'miRNA_encoding'::text);
  25489. --
  25490. -- Name: mirna_gene; Type: VIEW; Schema: so; Owner: -
  25491. --
  25492. CREATE VIEW mirna_gene AS
  25493. SELECT feature.feature_id AS mirna_gene_id,
  25494. feature.feature_id,
  25495. feature.dbxref_id,
  25496. feature.organism_id,
  25497. feature.name,
  25498. feature.uniquename,
  25499. feature.residues,
  25500. feature.seqlen,
  25501. feature.md5checksum,
  25502. feature.type_id,
  25503. feature.is_analysis,
  25504. feature.is_obsolete,
  25505. feature.timeaccessioned,
  25506. feature.timelastmodified
  25507. FROM (feature
  25508. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25509. WHERE ((cvterm.name)::text = 'miRNA_gene'::text);
  25510. --
  25511. -- Name: mirna_loop; Type: VIEW; Schema: so; Owner: -
  25512. --
  25513. CREATE VIEW mirna_loop AS
  25514. SELECT feature.feature_id AS mirna_loop_id,
  25515. feature.feature_id,
  25516. feature.dbxref_id,
  25517. feature.organism_id,
  25518. feature.name,
  25519. feature.uniquename,
  25520. feature.residues,
  25521. feature.seqlen,
  25522. feature.md5checksum,
  25523. feature.type_id,
  25524. feature.is_analysis,
  25525. feature.is_obsolete,
  25526. feature.timeaccessioned,
  25527. feature.timelastmodified
  25528. FROM (feature
  25529. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25530. WHERE ((cvterm.name)::text = 'miRNA_loop'::text);
  25531. --
  25532. -- Name: mirna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  25533. --
  25534. CREATE VIEW mirna_primary_transcript AS
  25535. SELECT feature.feature_id AS mirna_primary_transcript_id,
  25536. feature.feature_id,
  25537. feature.dbxref_id,
  25538. feature.organism_id,
  25539. feature.name,
  25540. feature.uniquename,
  25541. feature.residues,
  25542. feature.seqlen,
  25543. feature.md5checksum,
  25544. feature.type_id,
  25545. feature.is_analysis,
  25546. feature.is_obsolete,
  25547. feature.timeaccessioned,
  25548. feature.timelastmodified
  25549. FROM (feature
  25550. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25551. WHERE (((cvterm.name)::text = 'stRNA_primary_transcript'::text) OR ((cvterm.name)::text = 'miRNA_primary_transcript'::text));
  25552. --
  25553. -- Name: mirna_primary_transcript_region; Type: VIEW; Schema: so; Owner: -
  25554. --
  25555. CREATE VIEW mirna_primary_transcript_region AS
  25556. SELECT feature.feature_id AS mirna_primary_transcript_region_id,
  25557. feature.feature_id,
  25558. feature.dbxref_id,
  25559. feature.organism_id,
  25560. feature.name,
  25561. feature.uniquename,
  25562. feature.residues,
  25563. feature.seqlen,
  25564. feature.md5checksum,
  25565. feature.type_id,
  25566. feature.is_analysis,
  25567. feature.is_obsolete,
  25568. feature.timeaccessioned,
  25569. feature.timelastmodified
  25570. FROM (feature
  25571. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25572. WHERE ((((((cvterm.name)::text = 'pre_miRNA'::text) OR ((cvterm.name)::text = 'miRNA_stem'::text)) OR ((cvterm.name)::text = 'miRNA_loop'::text)) OR ((cvterm.name)::text = 'miRNA_antiguide'::text)) OR ((cvterm.name)::text = 'miRNA_primary_transcript_region'::text));
  25573. --
  25574. -- Name: mirna_stem; Type: VIEW; Schema: so; Owner: -
  25575. --
  25576. CREATE VIEW mirna_stem AS
  25577. SELECT feature.feature_id AS mirna_stem_id,
  25578. feature.feature_id,
  25579. feature.dbxref_id,
  25580. feature.organism_id,
  25581. feature.name,
  25582. feature.uniquename,
  25583. feature.residues,
  25584. feature.seqlen,
  25585. feature.md5checksum,
  25586. feature.type_id,
  25587. feature.is_analysis,
  25588. feature.is_obsolete,
  25589. feature.timeaccessioned,
  25590. feature.timelastmodified
  25591. FROM (feature
  25592. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25593. WHERE ((cvterm.name)::text = 'miRNA_stem'::text);
  25594. --
  25595. -- Name: mirna_target_site; Type: VIEW; Schema: so; Owner: -
  25596. --
  25597. CREATE VIEW mirna_target_site AS
  25598. SELECT feature.feature_id AS mirna_target_site_id,
  25599. feature.feature_id,
  25600. feature.dbxref_id,
  25601. feature.organism_id,
  25602. feature.name,
  25603. feature.uniquename,
  25604. feature.residues,
  25605. feature.seqlen,
  25606. feature.md5checksum,
  25607. feature.type_id,
  25608. feature.is_analysis,
  25609. feature.is_obsolete,
  25610. feature.timeaccessioned,
  25611. feature.timelastmodified
  25612. FROM (feature
  25613. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25614. WHERE ((cvterm.name)::text = 'miRNA_target_site'::text);
  25615. --
  25616. -- Name: mirtron; Type: VIEW; Schema: so; Owner: -
  25617. --
  25618. CREATE VIEW mirtron AS
  25619. SELECT feature.feature_id AS mirtron_id,
  25620. feature.feature_id,
  25621. feature.dbxref_id,
  25622. feature.organism_id,
  25623. feature.name,
  25624. feature.uniquename,
  25625. feature.residues,
  25626. feature.seqlen,
  25627. feature.md5checksum,
  25628. feature.type_id,
  25629. feature.is_analysis,
  25630. feature.is_obsolete,
  25631. feature.timeaccessioned,
  25632. feature.timelastmodified
  25633. FROM (feature
  25634. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25635. WHERE ((cvterm.name)::text = 'mirtron'::text);
  25636. --
  25637. -- Name: missense_codon; Type: VIEW; Schema: so; Owner: -
  25638. --
  25639. CREATE VIEW missense_codon AS
  25640. SELECT feature.feature_id AS missense_codon_id,
  25641. feature.feature_id,
  25642. feature.dbxref_id,
  25643. feature.organism_id,
  25644. feature.name,
  25645. feature.uniquename,
  25646. feature.residues,
  25647. feature.seqlen,
  25648. feature.md5checksum,
  25649. feature.type_id,
  25650. feature.is_analysis,
  25651. feature.is_obsolete,
  25652. feature.timeaccessioned,
  25653. feature.timelastmodified
  25654. FROM (feature
  25655. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25656. WHERE ((((cvterm.name)::text = 'conservative_missense_codon'::text) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'missense_codon'::text));
  25657. --
  25658. -- Name: mite; Type: VIEW; Schema: so; Owner: -
  25659. --
  25660. CREATE VIEW mite AS
  25661. SELECT feature.feature_id AS mite_id,
  25662. feature.feature_id,
  25663. feature.dbxref_id,
  25664. feature.organism_id,
  25665. feature.name,
  25666. feature.uniquename,
  25667. feature.residues,
  25668. feature.seqlen,
  25669. feature.md5checksum,
  25670. feature.type_id,
  25671. feature.is_analysis,
  25672. feature.is_obsolete,
  25673. feature.timeaccessioned,
  25674. feature.timelastmodified
  25675. FROM (feature
  25676. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25677. WHERE ((cvterm.name)::text = 'MITE'::text);
  25678. --
  25679. -- Name: mitochondrial_chromosome; Type: VIEW; Schema: so; Owner: -
  25680. --
  25681. CREATE VIEW mitochondrial_chromosome AS
  25682. SELECT feature.feature_id AS mitochondrial_chromosome_id,
  25683. feature.feature_id,
  25684. feature.dbxref_id,
  25685. feature.organism_id,
  25686. feature.name,
  25687. feature.uniquename,
  25688. feature.residues,
  25689. feature.seqlen,
  25690. feature.md5checksum,
  25691. feature.type_id,
  25692. feature.is_analysis,
  25693. feature.is_obsolete,
  25694. feature.timeaccessioned,
  25695. feature.timelastmodified
  25696. FROM (feature
  25697. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25698. WHERE ((cvterm.name)::text = 'mitochondrial_chromosome'::text);
  25699. --
  25700. -- Name: mitochondrial_dna; Type: VIEW; Schema: so; Owner: -
  25701. --
  25702. CREATE VIEW mitochondrial_dna AS
  25703. SELECT feature.feature_id AS mitochondrial_dna_id,
  25704. feature.feature_id,
  25705. feature.dbxref_id,
  25706. feature.organism_id,
  25707. feature.name,
  25708. feature.uniquename,
  25709. feature.residues,
  25710. feature.seqlen,
  25711. feature.md5checksum,
  25712. feature.type_id,
  25713. feature.is_analysis,
  25714. feature.is_obsolete,
  25715. feature.timeaccessioned,
  25716. feature.timelastmodified
  25717. FROM (feature
  25718. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25719. WHERE ((cvterm.name)::text = 'mitochondrial_DNA'::text);
  25720. --
  25721. -- Name: mitochondrial_sequence; Type: VIEW; Schema: so; Owner: -
  25722. --
  25723. CREATE VIEW mitochondrial_sequence AS
  25724. SELECT feature.feature_id AS mitochondrial_sequence_id,
  25725. feature.feature_id,
  25726. feature.dbxref_id,
  25727. feature.organism_id,
  25728. feature.name,
  25729. feature.uniquename,
  25730. feature.residues,
  25731. feature.seqlen,
  25732. feature.md5checksum,
  25733. feature.type_id,
  25734. feature.is_analysis,
  25735. feature.is_obsolete,
  25736. feature.timeaccessioned,
  25737. feature.timelastmodified
  25738. FROM (feature
  25739. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25740. WHERE (((cvterm.name)::text = 'mitochondrial_DNA'::text) OR ((cvterm.name)::text = 'mitochondrial_sequence'::text));
  25741. --
  25742. -- Name: mnp; Type: VIEW; Schema: so; Owner: -
  25743. --
  25744. CREATE VIEW mnp AS
  25745. SELECT feature.feature_id AS mnp_id,
  25746. feature.feature_id,
  25747. feature.dbxref_id,
  25748. feature.organism_id,
  25749. feature.name,
  25750. feature.uniquename,
  25751. feature.residues,
  25752. feature.seqlen,
  25753. feature.md5checksum,
  25754. feature.type_id,
  25755. feature.is_analysis,
  25756. feature.is_obsolete,
  25757. feature.timeaccessioned,
  25758. feature.timelastmodified
  25759. FROM (feature
  25760. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25761. WHERE ((cvterm.name)::text = 'MNP'::text);
  25762. --
  25763. -- Name: mobile; Type: VIEW; Schema: so; Owner: -
  25764. --
  25765. CREATE VIEW mobile AS
  25766. SELECT feature.feature_id AS mobile_id,
  25767. feature.feature_id,
  25768. feature.dbxref_id,
  25769. feature.organism_id,
  25770. feature.name,
  25771. feature.uniquename,
  25772. feature.residues,
  25773. feature.seqlen,
  25774. feature.md5checksum,
  25775. feature.type_id,
  25776. feature.is_analysis,
  25777. feature.is_obsolete,
  25778. feature.timeaccessioned,
  25779. feature.timelastmodified
  25780. FROM (feature
  25781. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25782. WHERE ((cvterm.name)::text = 'mobile'::text);
  25783. --
  25784. -- Name: mobile_genetic_element; Type: VIEW; Schema: so; Owner: -
  25785. --
  25786. CREATE VIEW mobile_genetic_element AS
  25787. SELECT feature.feature_id AS mobile_genetic_element_id,
  25788. feature.feature_id,
  25789. feature.dbxref_id,
  25790. feature.organism_id,
  25791. feature.name,
  25792. feature.uniquename,
  25793. feature.residues,
  25794. feature.seqlen,
  25795. feature.md5checksum,
  25796. feature.type_id,
  25797. feature.is_analysis,
  25798. feature.is_obsolete,
  25799. feature.timeaccessioned,
  25800. feature.timelastmodified
  25801. FROM (feature
  25802. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25803. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'mobile_intron'::text) OR ((cvterm.name)::text = 'extrachromosomal_mobile_genetic_element'::text)) OR ((cvterm.name)::text = 'integrated_mobile_genetic_element'::text)) OR ((cvterm.name)::text = 'natural_transposable_element'::text)) OR ((cvterm.name)::text = 'viral_sequence'::text)) OR ((cvterm.name)::text = 'natural_plasmid'::text)) OR ((cvterm.name)::text = 'phage_sequence'::text)) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'transposable_element'::text)) OR ((cvterm.name)::text = 'proviral_region'::text)) OR ((cvterm.name)::text = 'integron'::text)) OR ((cvterm.name)::text = 'genomic_island'::text)) OR ((cvterm.name)::text = 'integrated_plasmid'::text)) OR ((cvterm.name)::text = 'cointegrated_plasmid'::text)) OR ((cvterm.name)::text = 'retrotransposon'::text)) OR ((cvterm.name)::text = 'DNA_transposon'::text)) OR ((cvterm.name)::text = 'foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'transgenic_transposable_element'::text)) OR ((cvterm.name)::text = 'natural_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'nested_transposon'::text)) OR ((cvterm.name)::text = 'LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'LINE_element'::text)) OR ((cvterm.name)::text = 'SINE_element'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat_element'::text)) OR ((cvterm.name)::text = 'foldback_element'::text)) OR ((cvterm.name)::text = 'conjugative_transposon'::text)) OR ((cvterm.name)::text = 'helitron'::text)) OR ((cvterm.name)::text = 'p_element'::text)) OR ((cvterm.name)::text = 'MITE'::text)) OR ((cvterm.name)::text = 'insertion_sequence'::text)) OR ((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'prophage'::text)) OR ((cvterm.name)::text = 'pathogenic_island'::text)) OR ((cvterm.name)::text = 'metabolic_island'::text)) OR ((cvterm.name)::text = 'adaptive_island'::text)) OR ((cvterm.name)::text = 'symbiosis_island'::text)) OR ((cvterm.name)::text = 'cryptic_prophage'::text)) OR ((cvterm.name)::text = 'defective_conjugative_transposon'::text)) OR ((cvterm.name)::text = 'mobile_genetic_element'::text));
  25804. --
  25805. -- Name: mobile_intron; Type: VIEW; Schema: so; Owner: -
  25806. --
  25807. CREATE VIEW mobile_intron AS
  25808. SELECT feature.feature_id AS mobile_intron_id,
  25809. feature.feature_id,
  25810. feature.dbxref_id,
  25811. feature.organism_id,
  25812. feature.name,
  25813. feature.uniquename,
  25814. feature.residues,
  25815. feature.seqlen,
  25816. feature.md5checksum,
  25817. feature.type_id,
  25818. feature.is_analysis,
  25819. feature.is_obsolete,
  25820. feature.timeaccessioned,
  25821. feature.timelastmodified
  25822. FROM (feature
  25823. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25824. WHERE ((cvterm.name)::text = 'mobile_intron'::text);
  25825. --
  25826. -- Name: modified_adenosine; Type: VIEW; Schema: so; Owner: -
  25827. --
  25828. CREATE VIEW modified_adenosine AS
  25829. SELECT feature.feature_id AS modified_adenosine_id,
  25830. feature.feature_id,
  25831. feature.dbxref_id,
  25832. feature.organism_id,
  25833. feature.name,
  25834. feature.uniquename,
  25835. feature.residues,
  25836. feature.seqlen,
  25837. feature.md5checksum,
  25838. feature.type_id,
  25839. feature.is_analysis,
  25840. feature.is_obsolete,
  25841. feature.timeaccessioned,
  25842. feature.timelastmodified
  25843. FROM (feature
  25844. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25845. WHERE (((((((((((((((((((((((cvterm.name)::text = 'one_methyladenosine'::text) OR ((cvterm.name)::text = 'two_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'N6_glycinylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_threonyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyl_N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_hydroxynorvalylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosyladenosine_phosphate'::text)) OR ((cvterm.name)::text = 'N6_N6_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_2_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_N6_2_prime_O_trimethyladenosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_acetyladenosine'::text)) OR ((cvterm.name)::text = 'modified_adenosine'::text));
  25846. --
  25847. -- Name: modified_amino_acid_feature; Type: VIEW; Schema: so; Owner: -
  25848. --
  25849. CREATE VIEW modified_amino_acid_feature AS
  25850. SELECT feature.feature_id AS modified_amino_acid_feature_id,
  25851. feature.feature_id,
  25852. feature.dbxref_id,
  25853. feature.organism_id,
  25854. feature.name,
  25855. feature.uniquename,
  25856. feature.residues,
  25857. feature.seqlen,
  25858. feature.md5checksum,
  25859. feature.type_id,
  25860. feature.is_analysis,
  25861. feature.is_obsolete,
  25862. feature.timeaccessioned,
  25863. feature.timelastmodified
  25864. FROM (feature
  25865. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25866. WHERE (((((((((((((((((((((((cvterm.name)::text = 'modified_glycine'::text) OR ((cvterm.name)::text = 'modified_L_alanine'::text)) OR ((cvterm.name)::text = 'modified_L_asparagine'::text)) OR ((cvterm.name)::text = 'modified_L_aspartic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_cysteine'::text)) OR ((cvterm.name)::text = 'modified_L_glutamic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_threonine'::text)) OR ((cvterm.name)::text = 'modified_L_tryptophan'::text)) OR ((cvterm.name)::text = 'modified_L_glutamine'::text)) OR ((cvterm.name)::text = 'modified_L_methionine'::text)) OR ((cvterm.name)::text = 'modified_L_isoleucine'::text)) OR ((cvterm.name)::text = 'modified_L_phenylalanine'::text)) OR ((cvterm.name)::text = 'modified_L_histidine'::text)) OR ((cvterm.name)::text = 'modified_L_serine'::text)) OR ((cvterm.name)::text = 'modified_L_lysine'::text)) OR ((cvterm.name)::text = 'modified_L_leucine'::text)) OR ((cvterm.name)::text = 'modified_L_selenocysteine'::text)) OR ((cvterm.name)::text = 'modified_L_valine'::text)) OR ((cvterm.name)::text = 'modified_L_proline'::text)) OR ((cvterm.name)::text = 'modified_L_tyrosine'::text)) OR ((cvterm.name)::text = 'modified_L_arginine'::text)) OR ((cvterm.name)::text = 'modified_amino_acid_feature'::text));
  25867. --
  25868. -- Name: modified_base; Type: VIEW; Schema: so; Owner: -
  25869. --
  25870. CREATE VIEW modified_base AS
  25871. SELECT feature.feature_id AS modified_base_id,
  25872. feature.feature_id,
  25873. feature.dbxref_id,
  25874. feature.organism_id,
  25875. feature.name,
  25876. feature.uniquename,
  25877. feature.residues,
  25878. feature.seqlen,
  25879. feature.md5checksum,
  25880. feature.type_id,
  25881. feature.is_analysis,
  25882. feature.is_obsolete,
  25883. feature.timeaccessioned,
  25884. feature.timelastmodified
  25885. FROM (feature
  25886. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25887. WHERE (((((cvterm.name)::text = 'methylated_base_feature'::text) OR ((cvterm.name)::text = 'methylated_C'::text)) OR ((cvterm.name)::text = 'methylated_A'::text)) OR ((cvterm.name)::text = 'modified_base'::text));
  25888. --
  25889. -- Name: modified_cytidine; Type: VIEW; Schema: so; Owner: -
  25890. --
  25891. CREATE VIEW modified_cytidine AS
  25892. SELECT feature.feature_id AS modified_cytidine_id,
  25893. feature.feature_id,
  25894. feature.dbxref_id,
  25895. feature.organism_id,
  25896. feature.name,
  25897. feature.uniquename,
  25898. feature.residues,
  25899. feature.seqlen,
  25900. feature.md5checksum,
  25901. feature.type_id,
  25902. feature.is_analysis,
  25903. feature.is_obsolete,
  25904. feature.timeaccessioned,
  25905. feature.timelastmodified
  25906. FROM (feature
  25907. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25908. WHERE ((((((((((((((((cvterm.name)::text = 'three_methylcytidine'::text) OR ((cvterm.name)::text = 'five_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_thiocytidine'::text)) OR ((cvterm.name)::text = 'N4_acetylcytidine'::text)) OR ((cvterm.name)::text = 'five_formylcytidine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'N4_acetyl_2_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'lysidine'::text)) OR ((cvterm.name)::text = 'N4_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_2_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'five_hydroxymethylcytidine'::text)) OR ((cvterm.name)::text = 'five_formyl_two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_N4_2_prime_O_trimethylcytidine'::text)) OR ((cvterm.name)::text = 'modified_cytidine'::text));
  25909. --
  25910. -- Name: modified_glycine; Type: VIEW; Schema: so; Owner: -
  25911. --
  25912. CREATE VIEW modified_glycine AS
  25913. SELECT feature.feature_id AS modified_glycine_id,
  25914. feature.feature_id,
  25915. feature.dbxref_id,
  25916. feature.organism_id,
  25917. feature.name,
  25918. feature.uniquename,
  25919. feature.residues,
  25920. feature.seqlen,
  25921. feature.md5checksum,
  25922. feature.type_id,
  25923. feature.is_analysis,
  25924. feature.is_obsolete,
  25925. feature.timeaccessioned,
  25926. feature.timelastmodified
  25927. FROM (feature
  25928. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25929. WHERE ((cvterm.name)::text = 'modified_glycine'::text);
  25930. --
  25931. -- Name: modified_guanosine; Type: VIEW; Schema: so; Owner: -
  25932. --
  25933. CREATE VIEW modified_guanosine AS
  25934. SELECT feature.feature_id AS modified_guanosine_id,
  25935. feature.feature_id,
  25936. feature.dbxref_id,
  25937. feature.organism_id,
  25938. feature.name,
  25939. feature.uniquename,
  25940. feature.residues,
  25941. feature.seqlen,
  25942. feature.md5checksum,
  25943. feature.type_id,
  25944. feature.is_analysis,
  25945. feature.is_obsolete,
  25946. feature.timeaccessioned,
  25947. feature.timelastmodified
  25948. FROM (feature
  25949. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25950. WHERE ((((((((((((((((((((((((((((((cvterm.name)::text = 'seven_deazaguanosine'::text) OR ((cvterm.name)::text = 'one_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_methylguanosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_2_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_2_prime_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosylguanosine_phosphate'::text)) OR ((cvterm.name)::text = 'wybutosine'::text)) OR ((cvterm.name)::text = 'peroxywybutosine'::text)) OR ((cvterm.name)::text = 'hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'undermodified_hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'wyosine'::text)) OR ((cvterm.name)::text = 'methylwyosine'::text)) OR ((cvterm.name)::text = 'N2_7_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_7_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'four_demethylwyosine'::text)) OR ((cvterm.name)::text = 'isowyosine'::text)) OR ((cvterm.name)::text = 'N2_7_2prirme_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'queuosine'::text)) OR ((cvterm.name)::text = 'epoxyqueuosine'::text)) OR ((cvterm.name)::text = 'galactosyl_queuosine'::text)) OR ((cvterm.name)::text = 'mannosyl_queuosine'::text)) OR ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'archaeosine'::text)) OR ((cvterm.name)::text = 'modified_guanosine'::text));
  25951. --
  25952. -- Name: modified_inosine; Type: VIEW; Schema: so; Owner: -
  25953. --
  25954. CREATE VIEW modified_inosine AS
  25955. SELECT feature.feature_id AS modified_inosine_id,
  25956. feature.feature_id,
  25957. feature.dbxref_id,
  25958. feature.organism_id,
  25959. feature.name,
  25960. feature.uniquename,
  25961. feature.residues,
  25962. feature.seqlen,
  25963. feature.md5checksum,
  25964. feature.type_id,
  25965. feature.is_analysis,
  25966. feature.is_obsolete,
  25967. feature.timeaccessioned,
  25968. feature.timelastmodified
  25969. FROM (feature
  25970. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25971. WHERE ((((((cvterm.name)::text = 'methylinosine'::text) OR ((cvterm.name)::text = 'one_methylinosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylinosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylinosine'::text)) OR ((cvterm.name)::text = 'modified_inosine'::text));
  25972. --
  25973. -- Name: modified_l_alanine; Type: VIEW; Schema: so; Owner: -
  25974. --
  25975. CREATE VIEW modified_l_alanine AS
  25976. SELECT feature.feature_id AS modified_l_alanine_id,
  25977. feature.feature_id,
  25978. feature.dbxref_id,
  25979. feature.organism_id,
  25980. feature.name,
  25981. feature.uniquename,
  25982. feature.residues,
  25983. feature.seqlen,
  25984. feature.md5checksum,
  25985. feature.type_id,
  25986. feature.is_analysis,
  25987. feature.is_obsolete,
  25988. feature.timeaccessioned,
  25989. feature.timelastmodified
  25990. FROM (feature
  25991. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  25992. WHERE ((cvterm.name)::text = 'modified_L_alanine'::text);
  25993. --
  25994. -- Name: modified_l_arginine; Type: VIEW; Schema: so; Owner: -
  25995. --
  25996. CREATE VIEW modified_l_arginine AS
  25997. SELECT feature.feature_id AS modified_l_arginine_id,
  25998. feature.feature_id,
  25999. feature.dbxref_id,
  26000. feature.organism_id,
  26001. feature.name,
  26002. feature.uniquename,
  26003. feature.residues,
  26004. feature.seqlen,
  26005. feature.md5checksum,
  26006. feature.type_id,
  26007. feature.is_analysis,
  26008. feature.is_obsolete,
  26009. feature.timeaccessioned,
  26010. feature.timelastmodified
  26011. FROM (feature
  26012. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26013. WHERE ((cvterm.name)::text = 'modified_L_arginine'::text);
  26014. --
  26015. -- Name: modified_l_asparagine; Type: VIEW; Schema: so; Owner: -
  26016. --
  26017. CREATE VIEW modified_l_asparagine AS
  26018. SELECT feature.feature_id AS modified_l_asparagine_id,
  26019. feature.feature_id,
  26020. feature.dbxref_id,
  26021. feature.organism_id,
  26022. feature.name,
  26023. feature.uniquename,
  26024. feature.residues,
  26025. feature.seqlen,
  26026. feature.md5checksum,
  26027. feature.type_id,
  26028. feature.is_analysis,
  26029. feature.is_obsolete,
  26030. feature.timeaccessioned,
  26031. feature.timelastmodified
  26032. FROM (feature
  26033. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26034. WHERE ((cvterm.name)::text = 'modified_L_asparagine'::text);
  26035. --
  26036. -- Name: modified_l_aspartic_acid; Type: VIEW; Schema: so; Owner: -
  26037. --
  26038. CREATE VIEW modified_l_aspartic_acid AS
  26039. SELECT feature.feature_id AS modified_l_aspartic_acid_id,
  26040. feature.feature_id,
  26041. feature.dbxref_id,
  26042. feature.organism_id,
  26043. feature.name,
  26044. feature.uniquename,
  26045. feature.residues,
  26046. feature.seqlen,
  26047. feature.md5checksum,
  26048. feature.type_id,
  26049. feature.is_analysis,
  26050. feature.is_obsolete,
  26051. feature.timeaccessioned,
  26052. feature.timelastmodified
  26053. FROM (feature
  26054. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26055. WHERE ((cvterm.name)::text = 'modified_L_aspartic_acid'::text);
  26056. --
  26057. -- Name: modified_l_cysteine; Type: VIEW; Schema: so; Owner: -
  26058. --
  26059. CREATE VIEW modified_l_cysteine AS
  26060. SELECT feature.feature_id AS modified_l_cysteine_id,
  26061. feature.feature_id,
  26062. feature.dbxref_id,
  26063. feature.organism_id,
  26064. feature.name,
  26065. feature.uniquename,
  26066. feature.residues,
  26067. feature.seqlen,
  26068. feature.md5checksum,
  26069. feature.type_id,
  26070. feature.is_analysis,
  26071. feature.is_obsolete,
  26072. feature.timeaccessioned,
  26073. feature.timelastmodified
  26074. FROM (feature
  26075. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26076. WHERE ((cvterm.name)::text = 'modified_L_cysteine'::text);
  26077. --
  26078. -- Name: modified_l_glutamic_acid; Type: VIEW; Schema: so; Owner: -
  26079. --
  26080. CREATE VIEW modified_l_glutamic_acid AS
  26081. SELECT feature.feature_id AS modified_l_glutamic_acid_id,
  26082. feature.feature_id,
  26083. feature.dbxref_id,
  26084. feature.organism_id,
  26085. feature.name,
  26086. feature.uniquename,
  26087. feature.residues,
  26088. feature.seqlen,
  26089. feature.md5checksum,
  26090. feature.type_id,
  26091. feature.is_analysis,
  26092. feature.is_obsolete,
  26093. feature.timeaccessioned,
  26094. feature.timelastmodified
  26095. FROM (feature
  26096. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26097. WHERE ((cvterm.name)::text = 'modified_L_glutamic_acid'::text);
  26098. --
  26099. -- Name: modified_l_glutamine; Type: VIEW; Schema: so; Owner: -
  26100. --
  26101. CREATE VIEW modified_l_glutamine AS
  26102. SELECT feature.feature_id AS modified_l_glutamine_id,
  26103. feature.feature_id,
  26104. feature.dbxref_id,
  26105. feature.organism_id,
  26106. feature.name,
  26107. feature.uniquename,
  26108. feature.residues,
  26109. feature.seqlen,
  26110. feature.md5checksum,
  26111. feature.type_id,
  26112. feature.is_analysis,
  26113. feature.is_obsolete,
  26114. feature.timeaccessioned,
  26115. feature.timelastmodified
  26116. FROM (feature
  26117. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26118. WHERE ((cvterm.name)::text = 'modified_L_glutamine'::text);
  26119. --
  26120. -- Name: modified_l_histidine; Type: VIEW; Schema: so; Owner: -
  26121. --
  26122. CREATE VIEW modified_l_histidine AS
  26123. SELECT feature.feature_id AS modified_l_histidine_id,
  26124. feature.feature_id,
  26125. feature.dbxref_id,
  26126. feature.organism_id,
  26127. feature.name,
  26128. feature.uniquename,
  26129. feature.residues,
  26130. feature.seqlen,
  26131. feature.md5checksum,
  26132. feature.type_id,
  26133. feature.is_analysis,
  26134. feature.is_obsolete,
  26135. feature.timeaccessioned,
  26136. feature.timelastmodified
  26137. FROM (feature
  26138. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26139. WHERE ((cvterm.name)::text = 'modified_L_histidine'::text);
  26140. --
  26141. -- Name: modified_l_isoleucine; Type: VIEW; Schema: so; Owner: -
  26142. --
  26143. CREATE VIEW modified_l_isoleucine AS
  26144. SELECT feature.feature_id AS modified_l_isoleucine_id,
  26145. feature.feature_id,
  26146. feature.dbxref_id,
  26147. feature.organism_id,
  26148. feature.name,
  26149. feature.uniquename,
  26150. feature.residues,
  26151. feature.seqlen,
  26152. feature.md5checksum,
  26153. feature.type_id,
  26154. feature.is_analysis,
  26155. feature.is_obsolete,
  26156. feature.timeaccessioned,
  26157. feature.timelastmodified
  26158. FROM (feature
  26159. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26160. WHERE ((cvterm.name)::text = 'modified_L_isoleucine'::text);
  26161. --
  26162. -- Name: modified_l_leucine; Type: VIEW; Schema: so; Owner: -
  26163. --
  26164. CREATE VIEW modified_l_leucine AS
  26165. SELECT feature.feature_id AS modified_l_leucine_id,
  26166. feature.feature_id,
  26167. feature.dbxref_id,
  26168. feature.organism_id,
  26169. feature.name,
  26170. feature.uniquename,
  26171. feature.residues,
  26172. feature.seqlen,
  26173. feature.md5checksum,
  26174. feature.type_id,
  26175. feature.is_analysis,
  26176. feature.is_obsolete,
  26177. feature.timeaccessioned,
  26178. feature.timelastmodified
  26179. FROM (feature
  26180. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26181. WHERE ((cvterm.name)::text = 'modified_L_leucine'::text);
  26182. --
  26183. -- Name: modified_l_lysine; Type: VIEW; Schema: so; Owner: -
  26184. --
  26185. CREATE VIEW modified_l_lysine AS
  26186. SELECT feature.feature_id AS modified_l_lysine_id,
  26187. feature.feature_id,
  26188. feature.dbxref_id,
  26189. feature.organism_id,
  26190. feature.name,
  26191. feature.uniquename,
  26192. feature.residues,
  26193. feature.seqlen,
  26194. feature.md5checksum,
  26195. feature.type_id,
  26196. feature.is_analysis,
  26197. feature.is_obsolete,
  26198. feature.timeaccessioned,
  26199. feature.timelastmodified
  26200. FROM (feature
  26201. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26202. WHERE ((cvterm.name)::text = 'modified_L_lysine'::text);
  26203. --
  26204. -- Name: modified_l_methionine; Type: VIEW; Schema: so; Owner: -
  26205. --
  26206. CREATE VIEW modified_l_methionine AS
  26207. SELECT feature.feature_id AS modified_l_methionine_id,
  26208. feature.feature_id,
  26209. feature.dbxref_id,
  26210. feature.organism_id,
  26211. feature.name,
  26212. feature.uniquename,
  26213. feature.residues,
  26214. feature.seqlen,
  26215. feature.md5checksum,
  26216. feature.type_id,
  26217. feature.is_analysis,
  26218. feature.is_obsolete,
  26219. feature.timeaccessioned,
  26220. feature.timelastmodified
  26221. FROM (feature
  26222. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26223. WHERE ((cvterm.name)::text = 'modified_L_methionine'::text);
  26224. --
  26225. -- Name: modified_l_phenylalanine; Type: VIEW; Schema: so; Owner: -
  26226. --
  26227. CREATE VIEW modified_l_phenylalanine AS
  26228. SELECT feature.feature_id AS modified_l_phenylalanine_id,
  26229. feature.feature_id,
  26230. feature.dbxref_id,
  26231. feature.organism_id,
  26232. feature.name,
  26233. feature.uniquename,
  26234. feature.residues,
  26235. feature.seqlen,
  26236. feature.md5checksum,
  26237. feature.type_id,
  26238. feature.is_analysis,
  26239. feature.is_obsolete,
  26240. feature.timeaccessioned,
  26241. feature.timelastmodified
  26242. FROM (feature
  26243. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26244. WHERE ((cvterm.name)::text = 'modified_L_phenylalanine'::text);
  26245. --
  26246. -- Name: modified_l_proline; Type: VIEW; Schema: so; Owner: -
  26247. --
  26248. CREATE VIEW modified_l_proline AS
  26249. SELECT feature.feature_id AS modified_l_proline_id,
  26250. feature.feature_id,
  26251. feature.dbxref_id,
  26252. feature.organism_id,
  26253. feature.name,
  26254. feature.uniquename,
  26255. feature.residues,
  26256. feature.seqlen,
  26257. feature.md5checksum,
  26258. feature.type_id,
  26259. feature.is_analysis,
  26260. feature.is_obsolete,
  26261. feature.timeaccessioned,
  26262. feature.timelastmodified
  26263. FROM (feature
  26264. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26265. WHERE ((cvterm.name)::text = 'modified_L_proline'::text);
  26266. --
  26267. -- Name: modified_l_selenocysteine; Type: VIEW; Schema: so; Owner: -
  26268. --
  26269. CREATE VIEW modified_l_selenocysteine AS
  26270. SELECT feature.feature_id AS modified_l_selenocysteine_id,
  26271. feature.feature_id,
  26272. feature.dbxref_id,
  26273. feature.organism_id,
  26274. feature.name,
  26275. feature.uniquename,
  26276. feature.residues,
  26277. feature.seqlen,
  26278. feature.md5checksum,
  26279. feature.type_id,
  26280. feature.is_analysis,
  26281. feature.is_obsolete,
  26282. feature.timeaccessioned,
  26283. feature.timelastmodified
  26284. FROM (feature
  26285. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26286. WHERE ((cvterm.name)::text = 'modified_L_selenocysteine'::text);
  26287. --
  26288. -- Name: modified_l_serine; Type: VIEW; Schema: so; Owner: -
  26289. --
  26290. CREATE VIEW modified_l_serine AS
  26291. SELECT feature.feature_id AS modified_l_serine_id,
  26292. feature.feature_id,
  26293. feature.dbxref_id,
  26294. feature.organism_id,
  26295. feature.name,
  26296. feature.uniquename,
  26297. feature.residues,
  26298. feature.seqlen,
  26299. feature.md5checksum,
  26300. feature.type_id,
  26301. feature.is_analysis,
  26302. feature.is_obsolete,
  26303. feature.timeaccessioned,
  26304. feature.timelastmodified
  26305. FROM (feature
  26306. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26307. WHERE ((cvterm.name)::text = 'modified_L_serine'::text);
  26308. --
  26309. -- Name: modified_l_threonine; Type: VIEW; Schema: so; Owner: -
  26310. --
  26311. CREATE VIEW modified_l_threonine AS
  26312. SELECT feature.feature_id AS modified_l_threonine_id,
  26313. feature.feature_id,
  26314. feature.dbxref_id,
  26315. feature.organism_id,
  26316. feature.name,
  26317. feature.uniquename,
  26318. feature.residues,
  26319. feature.seqlen,
  26320. feature.md5checksum,
  26321. feature.type_id,
  26322. feature.is_analysis,
  26323. feature.is_obsolete,
  26324. feature.timeaccessioned,
  26325. feature.timelastmodified
  26326. FROM (feature
  26327. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26328. WHERE ((cvterm.name)::text = 'modified_L_threonine'::text);
  26329. --
  26330. -- Name: modified_l_tryptophan; Type: VIEW; Schema: so; Owner: -
  26331. --
  26332. CREATE VIEW modified_l_tryptophan AS
  26333. SELECT feature.feature_id AS modified_l_tryptophan_id,
  26334. feature.feature_id,
  26335. feature.dbxref_id,
  26336. feature.organism_id,
  26337. feature.name,
  26338. feature.uniquename,
  26339. feature.residues,
  26340. feature.seqlen,
  26341. feature.md5checksum,
  26342. feature.type_id,
  26343. feature.is_analysis,
  26344. feature.is_obsolete,
  26345. feature.timeaccessioned,
  26346. feature.timelastmodified
  26347. FROM (feature
  26348. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26349. WHERE ((cvterm.name)::text = 'modified_L_tryptophan'::text);
  26350. --
  26351. -- Name: modified_l_tyrosine; Type: VIEW; Schema: so; Owner: -
  26352. --
  26353. CREATE VIEW modified_l_tyrosine AS
  26354. SELECT feature.feature_id AS modified_l_tyrosine_id,
  26355. feature.feature_id,
  26356. feature.dbxref_id,
  26357. feature.organism_id,
  26358. feature.name,
  26359. feature.uniquename,
  26360. feature.residues,
  26361. feature.seqlen,
  26362. feature.md5checksum,
  26363. feature.type_id,
  26364. feature.is_analysis,
  26365. feature.is_obsolete,
  26366. feature.timeaccessioned,
  26367. feature.timelastmodified
  26368. FROM (feature
  26369. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26370. WHERE ((cvterm.name)::text = 'modified_L_tyrosine'::text);
  26371. --
  26372. -- Name: modified_l_valine; Type: VIEW; Schema: so; Owner: -
  26373. --
  26374. CREATE VIEW modified_l_valine AS
  26375. SELECT feature.feature_id AS modified_l_valine_id,
  26376. feature.feature_id,
  26377. feature.dbxref_id,
  26378. feature.organism_id,
  26379. feature.name,
  26380. feature.uniquename,
  26381. feature.residues,
  26382. feature.seqlen,
  26383. feature.md5checksum,
  26384. feature.type_id,
  26385. feature.is_analysis,
  26386. feature.is_obsolete,
  26387. feature.timeaccessioned,
  26388. feature.timelastmodified
  26389. FROM (feature
  26390. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26391. WHERE ((cvterm.name)::text = 'modified_L_valine'::text);
  26392. --
  26393. -- Name: modified_rna_base_feature; Type: VIEW; Schema: so; Owner: -
  26394. --
  26395. CREATE VIEW modified_rna_base_feature AS
  26396. SELECT feature.feature_id AS modified_rna_base_feature_id,
  26397. feature.feature_id,
  26398. feature.dbxref_id,
  26399. feature.organism_id,
  26400. feature.name,
  26401. feature.uniquename,
  26402. feature.residues,
  26403. feature.seqlen,
  26404. feature.md5checksum,
  26405. feature.type_id,
  26406. feature.is_analysis,
  26407. feature.is_obsolete,
  26408. feature.timeaccessioned,
  26409. feature.timelastmodified
  26410. FROM (feature
  26411. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26412. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'inosine'::text) OR ((cvterm.name)::text = 'seven_methylguanine'::text)) OR ((cvterm.name)::text = 'ribothymidine'::text)) OR ((cvterm.name)::text = 'modified_adenosine'::text)) OR ((cvterm.name)::text = 'modified_cytidine'::text)) OR ((cvterm.name)::text = 'modified_guanosine'::text)) OR ((cvterm.name)::text = 'modified_uridine'::text)) OR ((cvterm.name)::text = 'modified_inosine'::text)) OR ((cvterm.name)::text = 'methylinosine'::text)) OR ((cvterm.name)::text = 'one_methylinosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylinosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylinosine'::text)) OR ((cvterm.name)::text = 'one_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'N6_glycinylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_threonyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyl_N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_hydroxynorvalylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosyladenosine_phosphate'::text)) OR ((cvterm.name)::text = 'N6_N6_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_2_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_N6_2_prime_O_trimethyladenosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_acetyladenosine'::text)) OR ((cvterm.name)::text = 'three_methylcytidine'::text)) OR ((cvterm.name)::text = 'five_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_thiocytidine'::text)) OR ((cvterm.name)::text = 'N4_acetylcytidine'::text)) OR ((cvterm.name)::text = 'five_formylcytidine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'N4_acetyl_2_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'lysidine'::text)) OR ((cvterm.name)::text = 'N4_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_2_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'five_hydroxymethylcytidine'::text)) OR ((cvterm.name)::text = 'five_formyl_two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_N4_2_prime_O_trimethylcytidine'::text)) OR ((cvterm.name)::text = 'seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'one_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_methylguanosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_2_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_2_prime_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosylguanosine_phosphate'::text)) OR ((cvterm.name)::text = 'wybutosine'::text)) OR ((cvterm.name)::text = 'peroxywybutosine'::text)) OR ((cvterm.name)::text = 'hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'undermodified_hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'wyosine'::text)) OR ((cvterm.name)::text = 'methylwyosine'::text)) OR ((cvterm.name)::text = 'N2_7_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_7_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'four_demethylwyosine'::text)) OR ((cvterm.name)::text = 'isowyosine'::text)) OR ((cvterm.name)::text = 'N2_7_2prirme_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'queuosine'::text)) OR ((cvterm.name)::text = 'epoxyqueuosine'::text)) OR ((cvterm.name)::text = 'galactosyl_queuosine'::text)) OR ((cvterm.name)::text = 'mannosyl_queuosine'::text)) OR ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'archaeosine'::text)) OR ((cvterm.name)::text = 'dihydrouridine'::text)) OR ((cvterm.name)::text = 'pseudouridine'::text)) OR ((cvterm.name)::text = 'five_methyluridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'one_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_thiouridine'::text)) OR ((cvterm.name)::text = 'four_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methyl_2_thiouridine'::text)) OR ((cvterm.name)::text = 'two_thio_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'three_three_amino_three_carboxypropyl_uridine'::text)) OR ((cvterm.name)::text = 'five_hydroxyuridine'::text)) OR ((cvterm.name)::text = 'five_methoxyuridine'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_aminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_selenouridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'three_methyluridine'::text)) OR ((cvterm.name)::text = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethyluridine'::text)) OR ((cvterm.name)::text = 'three_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'five_methyldihydrouridine'::text)) OR ((cvterm.name)::text = 'three_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyluridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'modified_RNA_base_feature'::text));
  26413. --
  26414. -- Name: modified_uridine; Type: VIEW; Schema: so; Owner: -
  26415. --
  26416. CREATE VIEW modified_uridine AS
  26417. SELECT feature.feature_id AS modified_uridine_id,
  26418. feature.feature_id,
  26419. feature.dbxref_id,
  26420. feature.organism_id,
  26421. feature.name,
  26422. feature.uniquename,
  26423. feature.residues,
  26424. feature.seqlen,
  26425. feature.md5checksum,
  26426. feature.type_id,
  26427. feature.is_analysis,
  26428. feature.is_obsolete,
  26429. feature.timeaccessioned,
  26430. feature.timelastmodified
  26431. FROM (feature
  26432. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26433. WHERE (((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'dihydrouridine'::text) OR ((cvterm.name)::text = 'pseudouridine'::text)) OR ((cvterm.name)::text = 'five_methyluridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'one_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_thiouridine'::text)) OR ((cvterm.name)::text = 'four_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methyl_2_thiouridine'::text)) OR ((cvterm.name)::text = 'two_thio_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'three_three_amino_three_carboxypropyl_uridine'::text)) OR ((cvterm.name)::text = 'five_hydroxyuridine'::text)) OR ((cvterm.name)::text = 'five_methoxyuridine'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_aminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_selenouridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'three_methyluridine'::text)) OR ((cvterm.name)::text = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethyluridine'::text)) OR ((cvterm.name)::text = 'three_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'five_methyldihydrouridine'::text)) OR ((cvterm.name)::text = 'three_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyluridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'modified_uridine'::text));
  26434. --
  26435. -- Name: molecular_contact_region; Type: VIEW; Schema: so; Owner: -
  26436. --
  26437. CREATE VIEW molecular_contact_region AS
  26438. SELECT feature.feature_id AS molecular_contact_region_id,
  26439. feature.feature_id,
  26440. feature.dbxref_id,
  26441. feature.organism_id,
  26442. feature.name,
  26443. feature.uniquename,
  26444. feature.residues,
  26445. feature.seqlen,
  26446. feature.md5checksum,
  26447. feature.type_id,
  26448. feature.is_analysis,
  26449. feature.is_obsolete,
  26450. feature.timeaccessioned,
  26451. feature.timelastmodified
  26452. FROM (feature
  26453. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26454. WHERE ((((((((((((((((cvterm.name)::text = 'polypeptide_metal_contact'::text) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'molecular_contact_region'::text));
  26455. --
  26456. -- Name: monocistronic; Type: VIEW; Schema: so; Owner: -
  26457. --
  26458. CREATE VIEW monocistronic AS
  26459. SELECT feature.feature_id AS monocistronic_id,
  26460. feature.feature_id,
  26461. feature.dbxref_id,
  26462. feature.organism_id,
  26463. feature.name,
  26464. feature.uniquename,
  26465. feature.residues,
  26466. feature.seqlen,
  26467. feature.md5checksum,
  26468. feature.type_id,
  26469. feature.is_analysis,
  26470. feature.is_obsolete,
  26471. feature.timeaccessioned,
  26472. feature.timelastmodified
  26473. FROM (feature
  26474. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26475. WHERE ((cvterm.name)::text = 'monocistronic'::text);
  26476. --
  26477. -- Name: monocistronic_mrna; Type: VIEW; Schema: so; Owner: -
  26478. --
  26479. CREATE VIEW monocistronic_mrna AS
  26480. SELECT feature.feature_id AS monocistronic_mrna_id,
  26481. feature.feature_id,
  26482. feature.dbxref_id,
  26483. feature.organism_id,
  26484. feature.name,
  26485. feature.uniquename,
  26486. feature.residues,
  26487. feature.seqlen,
  26488. feature.md5checksum,
  26489. feature.type_id,
  26490. feature.is_analysis,
  26491. feature.is_obsolete,
  26492. feature.timeaccessioned,
  26493. feature.timelastmodified
  26494. FROM (feature
  26495. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26496. WHERE ((cvterm.name)::text = 'monocistronic_mRNA'::text);
  26497. --
  26498. -- Name: monocistronic_primary_transcript; Type: VIEW; Schema: so; Owner: -
  26499. --
  26500. CREATE VIEW monocistronic_primary_transcript AS
  26501. SELECT feature.feature_id AS monocistronic_primary_transcript_id,
  26502. feature.feature_id,
  26503. feature.dbxref_id,
  26504. feature.organism_id,
  26505. feature.name,
  26506. feature.uniquename,
  26507. feature.residues,
  26508. feature.seqlen,
  26509. feature.md5checksum,
  26510. feature.type_id,
  26511. feature.is_analysis,
  26512. feature.is_obsolete,
  26513. feature.timeaccessioned,
  26514. feature.timelastmodified
  26515. FROM (feature
  26516. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26517. WHERE ((cvterm.name)::text = 'monocistronic_primary_transcript'::text);
  26518. --
  26519. -- Name: monocistronic_transcript; Type: VIEW; Schema: so; Owner: -
  26520. --
  26521. CREATE VIEW monocistronic_transcript AS
  26522. SELECT feature.feature_id AS monocistronic_transcript_id,
  26523. feature.feature_id,
  26524. feature.dbxref_id,
  26525. feature.organism_id,
  26526. feature.name,
  26527. feature.uniquename,
  26528. feature.residues,
  26529. feature.seqlen,
  26530. feature.md5checksum,
  26531. feature.type_id,
  26532. feature.is_analysis,
  26533. feature.is_obsolete,
  26534. feature.timeaccessioned,
  26535. feature.timelastmodified
  26536. FROM (feature
  26537. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26538. WHERE ((((cvterm.name)::text = 'monocistronic_primary_transcript'::text) OR ((cvterm.name)::text = 'monocistronic_mRNA'::text)) OR ((cvterm.name)::text = 'monocistronic_transcript'::text));
  26539. --
  26540. -- Name: morpholino_backbone; Type: VIEW; Schema: so; Owner: -
  26541. --
  26542. CREATE VIEW morpholino_backbone AS
  26543. SELECT feature.feature_id AS morpholino_backbone_id,
  26544. feature.feature_id,
  26545. feature.dbxref_id,
  26546. feature.organism_id,
  26547. feature.name,
  26548. feature.uniquename,
  26549. feature.residues,
  26550. feature.seqlen,
  26551. feature.md5checksum,
  26552. feature.type_id,
  26553. feature.is_analysis,
  26554. feature.is_obsolete,
  26555. feature.timeaccessioned,
  26556. feature.timelastmodified
  26557. FROM (feature
  26558. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26559. WHERE ((cvterm.name)::text = 'morpholino_backbone'::text);
  26560. --
  26561. -- Name: morpholino_oligo; Type: VIEW; Schema: so; Owner: -
  26562. --
  26563. CREATE VIEW morpholino_oligo AS
  26564. SELECT feature.feature_id AS morpholino_oligo_id,
  26565. feature.feature_id,
  26566. feature.dbxref_id,
  26567. feature.organism_id,
  26568. feature.name,
  26569. feature.uniquename,
  26570. feature.residues,
  26571. feature.seqlen,
  26572. feature.md5checksum,
  26573. feature.type_id,
  26574. feature.is_analysis,
  26575. feature.is_obsolete,
  26576. feature.timeaccessioned,
  26577. feature.timelastmodified
  26578. FROM (feature
  26579. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26580. WHERE ((cvterm.name)::text = 'morpholino_oligo'::text);
  26581. --
  26582. -- Name: mrna_attribute; Type: VIEW; Schema: so; Owner: -
  26583. --
  26584. CREATE VIEW mrna_attribute AS
  26585. SELECT feature.feature_id AS mrna_attribute_id,
  26586. feature.feature_id,
  26587. feature.dbxref_id,
  26588. feature.organism_id,
  26589. feature.name,
  26590. feature.uniquename,
  26591. feature.residues,
  26592. feature.seqlen,
  26593. feature.md5checksum,
  26594. feature.type_id,
  26595. feature.is_analysis,
  26596. feature.is_obsolete,
  26597. feature.timeaccessioned,
  26598. feature.timelastmodified
  26599. FROM (feature
  26600. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26601. WHERE (((((((((((((((cvterm.name)::text = 'polyadenylated'::text) OR ((cvterm.name)::text = 'exemplar'::text)) OR ((cvterm.name)::text = 'frameshift'::text)) OR ((cvterm.name)::text = 'recoded'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_framshift'::text)) OR ((cvterm.name)::text = 'codon_redefined'::text)) OR ((cvterm.name)::text = 'recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'minus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'plus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'mRNA_attribute'::text));
  26602. --
  26603. -- Name: mrna_recoded_by_codon_redefinition; Type: VIEW; Schema: so; Owner: -
  26604. --
  26605. CREATE VIEW mrna_recoded_by_codon_redefinition AS
  26606. SELECT feature.feature_id AS mrna_recoded_by_codon_redefinition_id,
  26607. feature.feature_id,
  26608. feature.dbxref_id,
  26609. feature.organism_id,
  26610. feature.name,
  26611. feature.uniquename,
  26612. feature.residues,
  26613. feature.seqlen,
  26614. feature.md5checksum,
  26615. feature.type_id,
  26616. feature.is_analysis,
  26617. feature.is_obsolete,
  26618. feature.timeaccessioned,
  26619. feature.timelastmodified
  26620. FROM (feature
  26621. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26622. WHERE ((cvterm.name)::text = 'mRNA_recoded_by_codon_redefinition'::text);
  26623. --
  26624. -- Name: mrna_recoded_by_translational_bypass; Type: VIEW; Schema: so; Owner: -
  26625. --
  26626. CREATE VIEW mrna_recoded_by_translational_bypass AS
  26627. SELECT feature.feature_id AS mrna_recoded_by_translational_bypass_id,
  26628. feature.feature_id,
  26629. feature.dbxref_id,
  26630. feature.organism_id,
  26631. feature.name,
  26632. feature.uniquename,
  26633. feature.residues,
  26634. feature.seqlen,
  26635. feature.md5checksum,
  26636. feature.type_id,
  26637. feature.is_analysis,
  26638. feature.is_obsolete,
  26639. feature.timeaccessioned,
  26640. feature.timelastmodified
  26641. FROM (feature
  26642. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26643. WHERE ((cvterm.name)::text = 'mRNA_recoded_by_translational_bypass'::text);
  26644. --
  26645. -- Name: mrna_region; Type: VIEW; Schema: so; Owner: -
  26646. --
  26647. CREATE VIEW mrna_region AS
  26648. SELECT feature.feature_id AS mrna_region_id,
  26649. feature.feature_id,
  26650. feature.dbxref_id,
  26651. feature.organism_id,
  26652. feature.name,
  26653. feature.uniquename,
  26654. feature.residues,
  26655. feature.seqlen,
  26656. feature.md5checksum,
  26657. feature.type_id,
  26658. feature.is_analysis,
  26659. feature.is_obsolete,
  26660. feature.timeaccessioned,
  26661. feature.timelastmodified
  26662. FROM (feature
  26663. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26664. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'riboswitch'::text) OR ((cvterm.name)::text = 'ribosome_entry_site'::text)) OR ((cvterm.name)::text = 'UTR'::text)) OR ((cvterm.name)::text = 'CDS'::text)) OR ((cvterm.name)::text = 'five_prime_open_reading_frame'::text)) OR ((cvterm.name)::text = 'UTR_region'::text)) OR ((cvterm.name)::text = 'CDS_region'::text)) OR ((cvterm.name)::text = 'translational_frameshift'::text)) OR ((cvterm.name)::text = 'recoding_stimulatory_region'::text)) OR ((cvterm.name)::text = 'internal_ribosome_entry_site'::text)) OR ((cvterm.name)::text = 'Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'kozak_sequence'::text)) OR ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'five_prime_UTR'::text)) OR ((cvterm.name)::text = 'three_prime_UTR'::text)) OR ((cvterm.name)::text = 'internal_UTR'::text)) OR ((cvterm.name)::text = 'untranslated_region_polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'edited_CDS'::text)) OR ((cvterm.name)::text = 'CDS_fragment'::text)) OR ((cvterm.name)::text = 'CDS_independently_known'::text)) OR ((cvterm.name)::text = 'CDS_predicted'::text)) OR ((cvterm.name)::text = 'orphan_CDS'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_sequence_similarity_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_domain_match_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_EST_or_cDNA_data'::text)) OR ((cvterm.name)::text = 'upstream_AUG_codon'::text)) OR ((cvterm.name)::text = 'AU_rich_element'::text)) OR ((cvterm.name)::text = 'Bruno_response_element'::text)) OR ((cvterm.name)::text = 'iron_responsive_element'::text)) OR ((cvterm.name)::text = 'coding_start'::text)) OR ((cvterm.name)::text = 'coding_end'::text)) OR ((cvterm.name)::text = 'codon'::text)) OR ((cvterm.name)::text = 'recoded_codon'::text)) OR ((cvterm.name)::text = 'start_codon'::text)) OR ((cvterm.name)::text = 'stop_codon'::text)) OR ((cvterm.name)::text = 'stop_codon_read_through'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'non_canonical_start_codon'::text)) OR ((cvterm.name)::text = 'four_bp_start_codon'::text)) OR ((cvterm.name)::text = 'CTG_start_codon'::text)) OR ((cvterm.name)::text = 'plus_1_translational_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_translational_frameshift'::text)) OR ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'SECIS_element'::text)) OR ((cvterm.name)::text = 'three_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'five_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'stop_codon_signal'::text)) OR ((cvterm.name)::text = 'three_prime_stem_loop_structure'::text)) OR ((cvterm.name)::text = 'flanking_three_prime_quadruplet_recoding_signal'::text)) OR ((cvterm.name)::text = 'three_prime_repeat_recoding_signal'::text)) OR ((cvterm.name)::text = 'distant_three_prime_recoding_signal'::text)) OR ((cvterm.name)::text = 'UAG_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UAA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UGA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'mRNA_region'::text));
  26665. --
  26666. -- Name: mrna_with_frameshift; Type: VIEW; Schema: so; Owner: -
  26667. --
  26668. CREATE VIEW mrna_with_frameshift AS
  26669. SELECT feature.feature_id AS mrna_with_frameshift_id,
  26670. feature.feature_id,
  26671. feature.dbxref_id,
  26672. feature.organism_id,
  26673. feature.name,
  26674. feature.uniquename,
  26675. feature.residues,
  26676. feature.seqlen,
  26677. feature.md5checksum,
  26678. feature.type_id,
  26679. feature.is_analysis,
  26680. feature.is_obsolete,
  26681. feature.timeaccessioned,
  26682. feature.timelastmodified
  26683. FROM (feature
  26684. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26685. WHERE ((((((cvterm.name)::text = 'mRNA_with_minus_1_frameshift'::text) OR ((cvterm.name)::text = 'mRNA_with_plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_2_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_frameshift'::text));
  26686. --
  26687. -- Name: mrna_with_minus_1_frameshift; Type: VIEW; Schema: so; Owner: -
  26688. --
  26689. CREATE VIEW mrna_with_minus_1_frameshift AS
  26690. SELECT feature.feature_id AS mrna_with_minus_1_frameshift_id,
  26691. feature.feature_id,
  26692. feature.dbxref_id,
  26693. feature.organism_id,
  26694. feature.name,
  26695. feature.uniquename,
  26696. feature.residues,
  26697. feature.seqlen,
  26698. feature.md5checksum,
  26699. feature.type_id,
  26700. feature.is_analysis,
  26701. feature.is_obsolete,
  26702. feature.timeaccessioned,
  26703. feature.timelastmodified
  26704. FROM (feature
  26705. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26706. WHERE ((cvterm.name)::text = 'mRNA_with_minus_1_frameshift'::text);
  26707. --
  26708. -- Name: mrna_with_minus_2_frameshift; Type: VIEW; Schema: so; Owner: -
  26709. --
  26710. CREATE VIEW mrna_with_minus_2_frameshift AS
  26711. SELECT feature.feature_id AS mrna_with_minus_2_frameshift_id,
  26712. feature.feature_id,
  26713. feature.dbxref_id,
  26714. feature.organism_id,
  26715. feature.name,
  26716. feature.uniquename,
  26717. feature.residues,
  26718. feature.seqlen,
  26719. feature.md5checksum,
  26720. feature.type_id,
  26721. feature.is_analysis,
  26722. feature.is_obsolete,
  26723. feature.timeaccessioned,
  26724. feature.timelastmodified
  26725. FROM (feature
  26726. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26727. WHERE ((cvterm.name)::text = 'mRNA_with_minus_2_frameshift'::text);
  26728. --
  26729. -- Name: mrna_with_plus_1_frameshift; Type: VIEW; Schema: so; Owner: -
  26730. --
  26731. CREATE VIEW mrna_with_plus_1_frameshift AS
  26732. SELECT feature.feature_id AS mrna_with_plus_1_frameshift_id,
  26733. feature.feature_id,
  26734. feature.dbxref_id,
  26735. feature.organism_id,
  26736. feature.name,
  26737. feature.uniquename,
  26738. feature.residues,
  26739. feature.seqlen,
  26740. feature.md5checksum,
  26741. feature.type_id,
  26742. feature.is_analysis,
  26743. feature.is_obsolete,
  26744. feature.timeaccessioned,
  26745. feature.timelastmodified
  26746. FROM (feature
  26747. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26748. WHERE ((cvterm.name)::text = 'mRNA_with_plus_1_frameshift'::text);
  26749. --
  26750. -- Name: mrna_with_plus_2_frameshift; Type: VIEW; Schema: so; Owner: -
  26751. --
  26752. CREATE VIEW mrna_with_plus_2_frameshift AS
  26753. SELECT feature.feature_id AS mrna_with_plus_2_frameshift_id,
  26754. feature.feature_id,
  26755. feature.dbxref_id,
  26756. feature.organism_id,
  26757. feature.name,
  26758. feature.uniquename,
  26759. feature.residues,
  26760. feature.seqlen,
  26761. feature.md5checksum,
  26762. feature.type_id,
  26763. feature.is_analysis,
  26764. feature.is_obsolete,
  26765. feature.timeaccessioned,
  26766. feature.timelastmodified
  26767. FROM (feature
  26768. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26769. WHERE ((cvterm.name)::text = 'mRNA_with_plus_2_frameshift'::text);
  26770. --
  26771. -- Name: mt_gene; Type: VIEW; Schema: so; Owner: -
  26772. --
  26773. CREATE VIEW mt_gene AS
  26774. SELECT feature.feature_id AS mt_gene_id,
  26775. feature.feature_id,
  26776. feature.dbxref_id,
  26777. feature.organism_id,
  26778. feature.name,
  26779. feature.uniquename,
  26780. feature.residues,
  26781. feature.seqlen,
  26782. feature.md5checksum,
  26783. feature.type_id,
  26784. feature.is_analysis,
  26785. feature.is_obsolete,
  26786. feature.timeaccessioned,
  26787. feature.timelastmodified
  26788. FROM (feature
  26789. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26790. WHERE ((((((cvterm.name)::text = 'kinetoplast_gene'::text) OR ((cvterm.name)::text = 'maxicircle_gene'::text)) OR ((cvterm.name)::text = 'minicircle_gene'::text)) OR ((cvterm.name)::text = 'cryptogene'::text)) OR ((cvterm.name)::text = 'mt_gene'::text));
  26791. --
  26792. -- Name: mte; Type: VIEW; Schema: so; Owner: -
  26793. --
  26794. CREATE VIEW mte AS
  26795. SELECT feature.feature_id AS mte_id,
  26796. feature.feature_id,
  26797. feature.dbxref_id,
  26798. feature.organism_id,
  26799. feature.name,
  26800. feature.uniquename,
  26801. feature.residues,
  26802. feature.seqlen,
  26803. feature.md5checksum,
  26804. feature.type_id,
  26805. feature.is_analysis,
  26806. feature.is_obsolete,
  26807. feature.timeaccessioned,
  26808. feature.timelastmodified
  26809. FROM (feature
  26810. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26811. WHERE ((cvterm.name)::text = 'MTE'::text);
  26812. --
  26813. -- Name: mutated_variant_site; Type: VIEW; Schema: so; Owner: -
  26814. --
  26815. CREATE VIEW mutated_variant_site AS
  26816. SELECT feature.feature_id AS mutated_variant_site_id,
  26817. feature.feature_id,
  26818. feature.dbxref_id,
  26819. feature.organism_id,
  26820. feature.name,
  26821. feature.uniquename,
  26822. feature.residues,
  26823. feature.seqlen,
  26824. feature.md5checksum,
  26825. feature.type_id,
  26826. feature.is_analysis,
  26827. feature.is_obsolete,
  26828. feature.timeaccessioned,
  26829. feature.timelastmodified
  26830. FROM (feature
  26831. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26832. WHERE ((cvterm.name)::text = 'mutated_variant_site'::text);
  26833. --
  26834. -- Name: n2_2_prime_o_dimethylguanosine; Type: VIEW; Schema: so; Owner: -
  26835. --
  26836. CREATE VIEW n2_2_prime_o_dimethylguanosine AS
  26837. SELECT feature.feature_id AS n2_2_prime_o_dimethylguanosine_id,
  26838. feature.feature_id,
  26839. feature.dbxref_id,
  26840. feature.organism_id,
  26841. feature.name,
  26842. feature.uniquename,
  26843. feature.residues,
  26844. feature.seqlen,
  26845. feature.md5checksum,
  26846. feature.type_id,
  26847. feature.is_analysis,
  26848. feature.is_obsolete,
  26849. feature.timeaccessioned,
  26850. feature.timelastmodified
  26851. FROM (feature
  26852. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26853. WHERE ((cvterm.name)::text = 'N2_2_prime_O_dimethylguanosine'::text);
  26854. --
  26855. -- Name: n2_7_2prirme_o_trimethylguanosine; Type: VIEW; Schema: so; Owner: -
  26856. --
  26857. CREATE VIEW n2_7_2prirme_o_trimethylguanosine AS
  26858. SELECT feature.feature_id AS n2_7_2prirme_o_trimethylguanosine_id,
  26859. feature.feature_id,
  26860. feature.dbxref_id,
  26861. feature.organism_id,
  26862. feature.name,
  26863. feature.uniquename,
  26864. feature.residues,
  26865. feature.seqlen,
  26866. feature.md5checksum,
  26867. feature.type_id,
  26868. feature.is_analysis,
  26869. feature.is_obsolete,
  26870. feature.timeaccessioned,
  26871. feature.timelastmodified
  26872. FROM (feature
  26873. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26874. WHERE ((cvterm.name)::text = 'N2_7_2prirme_O_trimethylguanosine'::text);
  26875. --
  26876. -- Name: n2_7_dimethylguanosine; Type: VIEW; Schema: so; Owner: -
  26877. --
  26878. CREATE VIEW n2_7_dimethylguanosine AS
  26879. SELECT feature.feature_id AS n2_7_dimethylguanosine_id,
  26880. feature.feature_id,
  26881. feature.dbxref_id,
  26882. feature.organism_id,
  26883. feature.name,
  26884. feature.uniquename,
  26885. feature.residues,
  26886. feature.seqlen,
  26887. feature.md5checksum,
  26888. feature.type_id,
  26889. feature.is_analysis,
  26890. feature.is_obsolete,
  26891. feature.timeaccessioned,
  26892. feature.timelastmodified
  26893. FROM (feature
  26894. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26895. WHERE ((cvterm.name)::text = 'N2_7_dimethylguanosine'::text);
  26896. --
  26897. -- Name: n2_methylguanosine; Type: VIEW; Schema: so; Owner: -
  26898. --
  26899. CREATE VIEW n2_methylguanosine AS
  26900. SELECT feature.feature_id AS n2_methylguanosine_id,
  26901. feature.feature_id,
  26902. feature.dbxref_id,
  26903. feature.organism_id,
  26904. feature.name,
  26905. feature.uniquename,
  26906. feature.residues,
  26907. feature.seqlen,
  26908. feature.md5checksum,
  26909. feature.type_id,
  26910. feature.is_analysis,
  26911. feature.is_obsolete,
  26912. feature.timeaccessioned,
  26913. feature.timelastmodified
  26914. FROM (feature
  26915. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26916. WHERE ((cvterm.name)::text = 'N2_methylguanosine'::text);
  26917. --
  26918. -- Name: n2_n2_2_prime_o_trimethylguanosine; Type: VIEW; Schema: so; Owner: -
  26919. --
  26920. CREATE VIEW n2_n2_2_prime_o_trimethylguanosine AS
  26921. SELECT feature.feature_id AS n2_n2_2_prime_o_trimethylguanosine_id,
  26922. feature.feature_id,
  26923. feature.dbxref_id,
  26924. feature.organism_id,
  26925. feature.name,
  26926. feature.uniquename,
  26927. feature.residues,
  26928. feature.seqlen,
  26929. feature.md5checksum,
  26930. feature.type_id,
  26931. feature.is_analysis,
  26932. feature.is_obsolete,
  26933. feature.timeaccessioned,
  26934. feature.timelastmodified
  26935. FROM (feature
  26936. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26937. WHERE ((cvterm.name)::text = 'N2_N2_2_prime_O_trimethylguanosine'::text);
  26938. --
  26939. -- Name: n2_n2_7_trimethylguanosine; Type: VIEW; Schema: so; Owner: -
  26940. --
  26941. CREATE VIEW n2_n2_7_trimethylguanosine AS
  26942. SELECT feature.feature_id AS n2_n2_7_trimethylguanosine_id,
  26943. feature.feature_id,
  26944. feature.dbxref_id,
  26945. feature.organism_id,
  26946. feature.name,
  26947. feature.uniquename,
  26948. feature.residues,
  26949. feature.seqlen,
  26950. feature.md5checksum,
  26951. feature.type_id,
  26952. feature.is_analysis,
  26953. feature.is_obsolete,
  26954. feature.timeaccessioned,
  26955. feature.timelastmodified
  26956. FROM (feature
  26957. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26958. WHERE ((cvterm.name)::text = 'N2_N2_7_trimethylguanosine'::text);
  26959. --
  26960. -- Name: n2_n2_dimethylguanosine; Type: VIEW; Schema: so; Owner: -
  26961. --
  26962. CREATE VIEW n2_n2_dimethylguanosine AS
  26963. SELECT feature.feature_id AS n2_n2_dimethylguanosine_id,
  26964. feature.feature_id,
  26965. feature.dbxref_id,
  26966. feature.organism_id,
  26967. feature.name,
  26968. feature.uniquename,
  26969. feature.residues,
  26970. feature.seqlen,
  26971. feature.md5checksum,
  26972. feature.type_id,
  26973. feature.is_analysis,
  26974. feature.is_obsolete,
  26975. feature.timeaccessioned,
  26976. feature.timelastmodified
  26977. FROM (feature
  26978. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  26979. WHERE ((cvterm.name)::text = 'N2_N2_dimethylguanosine'::text);
  26980. --
  26981. -- Name: n4_2_prime_o_dimethylcytidine; Type: VIEW; Schema: so; Owner: -
  26982. --
  26983. CREATE VIEW n4_2_prime_o_dimethylcytidine AS
  26984. SELECT feature.feature_id AS n4_2_prime_o_dimethylcytidine_id,
  26985. feature.feature_id,
  26986. feature.dbxref_id,
  26987. feature.organism_id,
  26988. feature.name,
  26989. feature.uniquename,
  26990. feature.residues,
  26991. feature.seqlen,
  26992. feature.md5checksum,
  26993. feature.type_id,
  26994. feature.is_analysis,
  26995. feature.is_obsolete,
  26996. feature.timeaccessioned,
  26997. feature.timelastmodified
  26998. FROM (feature
  26999. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27000. WHERE ((cvterm.name)::text = 'N4_2_prime_O_dimethylcytidine'::text);
  27001. --
  27002. -- Name: n4_acetyl_2_prime_o_methylcytidine; Type: VIEW; Schema: so; Owner: -
  27003. --
  27004. CREATE VIEW n4_acetyl_2_prime_o_methylcytidine AS
  27005. SELECT feature.feature_id AS n4_acetyl_2_prime_o_methylcytidine_id,
  27006. feature.feature_id,
  27007. feature.dbxref_id,
  27008. feature.organism_id,
  27009. feature.name,
  27010. feature.uniquename,
  27011. feature.residues,
  27012. feature.seqlen,
  27013. feature.md5checksum,
  27014. feature.type_id,
  27015. feature.is_analysis,
  27016. feature.is_obsolete,
  27017. feature.timeaccessioned,
  27018. feature.timelastmodified
  27019. FROM (feature
  27020. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27021. WHERE ((cvterm.name)::text = 'N4_acetyl_2_prime_O_methylcytidine'::text);
  27022. --
  27023. -- Name: n4_acetylcytidine; Type: VIEW; Schema: so; Owner: -
  27024. --
  27025. CREATE VIEW n4_acetylcytidine AS
  27026. SELECT feature.feature_id AS n4_acetylcytidine_id,
  27027. feature.feature_id,
  27028. feature.dbxref_id,
  27029. feature.organism_id,
  27030. feature.name,
  27031. feature.uniquename,
  27032. feature.residues,
  27033. feature.seqlen,
  27034. feature.md5checksum,
  27035. feature.type_id,
  27036. feature.is_analysis,
  27037. feature.is_obsolete,
  27038. feature.timeaccessioned,
  27039. feature.timelastmodified
  27040. FROM (feature
  27041. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27042. WHERE ((cvterm.name)::text = 'N4_acetylcytidine'::text);
  27043. --
  27044. -- Name: n4_methylcytidine; Type: VIEW; Schema: so; Owner: -
  27045. --
  27046. CREATE VIEW n4_methylcytidine AS
  27047. SELECT feature.feature_id AS n4_methylcytidine_id,
  27048. feature.feature_id,
  27049. feature.dbxref_id,
  27050. feature.organism_id,
  27051. feature.name,
  27052. feature.uniquename,
  27053. feature.residues,
  27054. feature.seqlen,
  27055. feature.md5checksum,
  27056. feature.type_id,
  27057. feature.is_analysis,
  27058. feature.is_obsolete,
  27059. feature.timeaccessioned,
  27060. feature.timelastmodified
  27061. FROM (feature
  27062. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27063. WHERE ((cvterm.name)::text = 'N4_methylcytidine'::text);
  27064. --
  27065. -- Name: n4_n4_2_prime_o_trimethylcytidine; Type: VIEW; Schema: so; Owner: -
  27066. --
  27067. CREATE VIEW n4_n4_2_prime_o_trimethylcytidine AS
  27068. SELECT feature.feature_id AS n4_n4_2_prime_o_trimethylcytidine_id,
  27069. feature.feature_id,
  27070. feature.dbxref_id,
  27071. feature.organism_id,
  27072. feature.name,
  27073. feature.uniquename,
  27074. feature.residues,
  27075. feature.seqlen,
  27076. feature.md5checksum,
  27077. feature.type_id,
  27078. feature.is_analysis,
  27079. feature.is_obsolete,
  27080. feature.timeaccessioned,
  27081. feature.timelastmodified
  27082. FROM (feature
  27083. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27084. WHERE ((cvterm.name)::text = 'N4_N4_2_prime_O_trimethylcytidine'::text);
  27085. --
  27086. -- Name: n6_2_prime_o_dimethyladenosine; Type: VIEW; Schema: so; Owner: -
  27087. --
  27088. CREATE VIEW n6_2_prime_o_dimethyladenosine AS
  27089. SELECT feature.feature_id AS n6_2_prime_o_dimethyladenosine_id,
  27090. feature.feature_id,
  27091. feature.dbxref_id,
  27092. feature.organism_id,
  27093. feature.name,
  27094. feature.uniquename,
  27095. feature.residues,
  27096. feature.seqlen,
  27097. feature.md5checksum,
  27098. feature.type_id,
  27099. feature.is_analysis,
  27100. feature.is_obsolete,
  27101. feature.timeaccessioned,
  27102. feature.timelastmodified
  27103. FROM (feature
  27104. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27105. WHERE ((cvterm.name)::text = 'N6_2_prime_O_dimethyladenosine'::text);
  27106. --
  27107. -- Name: n6_acetyladenosine; Type: VIEW; Schema: so; Owner: -
  27108. --
  27109. CREATE VIEW n6_acetyladenosine AS
  27110. SELECT feature.feature_id AS n6_acetyladenosine_id,
  27111. feature.feature_id,
  27112. feature.dbxref_id,
  27113. feature.organism_id,
  27114. feature.name,
  27115. feature.uniquename,
  27116. feature.residues,
  27117. feature.seqlen,
  27118. feature.md5checksum,
  27119. feature.type_id,
  27120. feature.is_analysis,
  27121. feature.is_obsolete,
  27122. feature.timeaccessioned,
  27123. feature.timelastmodified
  27124. FROM (feature
  27125. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27126. WHERE ((cvterm.name)::text = 'N6_acetyladenosine'::text);
  27127. --
  27128. -- Name: n6_cis_hydroxyisopentenyl_adenosine; Type: VIEW; Schema: so; Owner: -
  27129. --
  27130. CREATE VIEW n6_cis_hydroxyisopentenyl_adenosine AS
  27131. SELECT feature.feature_id AS n6_cis_hydroxyisopentenyl_adenosine_id,
  27132. feature.feature_id,
  27133. feature.dbxref_id,
  27134. feature.organism_id,
  27135. feature.name,
  27136. feature.uniquename,
  27137. feature.residues,
  27138. feature.seqlen,
  27139. feature.md5checksum,
  27140. feature.type_id,
  27141. feature.is_analysis,
  27142. feature.is_obsolete,
  27143. feature.timeaccessioned,
  27144. feature.timelastmodified
  27145. FROM (feature
  27146. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27147. WHERE ((cvterm.name)::text = 'N6_cis_hydroxyisopentenyl_adenosine'::text);
  27148. --
  27149. -- Name: n6_glycinylcarbamoyladenosine; Type: VIEW; Schema: so; Owner: -
  27150. --
  27151. CREATE VIEW n6_glycinylcarbamoyladenosine AS
  27152. SELECT feature.feature_id AS n6_glycinylcarbamoyladenosine_id,
  27153. feature.feature_id,
  27154. feature.dbxref_id,
  27155. feature.organism_id,
  27156. feature.name,
  27157. feature.uniquename,
  27158. feature.residues,
  27159. feature.seqlen,
  27160. feature.md5checksum,
  27161. feature.type_id,
  27162. feature.is_analysis,
  27163. feature.is_obsolete,
  27164. feature.timeaccessioned,
  27165. feature.timelastmodified
  27166. FROM (feature
  27167. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27168. WHERE ((cvterm.name)::text = 'N6_glycinylcarbamoyladenosine'::text);
  27169. --
  27170. -- Name: n6_hydroxynorvalylcarbamoyladenosine; Type: VIEW; Schema: so; Owner: -
  27171. --
  27172. CREATE VIEW n6_hydroxynorvalylcarbamoyladenosine AS
  27173. SELECT feature.feature_id AS n6_hydroxynorvalylcarbamoyladenosine_id,
  27174. feature.feature_id,
  27175. feature.dbxref_id,
  27176. feature.organism_id,
  27177. feature.name,
  27178. feature.uniquename,
  27179. feature.residues,
  27180. feature.seqlen,
  27181. feature.md5checksum,
  27182. feature.type_id,
  27183. feature.is_analysis,
  27184. feature.is_obsolete,
  27185. feature.timeaccessioned,
  27186. feature.timelastmodified
  27187. FROM (feature
  27188. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27189. WHERE ((cvterm.name)::text = 'N6_hydroxynorvalylcarbamoyladenosine'::text);
  27190. --
  27191. -- Name: n6_isopentenyladenosine; Type: VIEW; Schema: so; Owner: -
  27192. --
  27193. CREATE VIEW n6_isopentenyladenosine AS
  27194. SELECT feature.feature_id AS n6_isopentenyladenosine_id,
  27195. feature.feature_id,
  27196. feature.dbxref_id,
  27197. feature.organism_id,
  27198. feature.name,
  27199. feature.uniquename,
  27200. feature.residues,
  27201. feature.seqlen,
  27202. feature.md5checksum,
  27203. feature.type_id,
  27204. feature.is_analysis,
  27205. feature.is_obsolete,
  27206. feature.timeaccessioned,
  27207. feature.timelastmodified
  27208. FROM (feature
  27209. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27210. WHERE ((cvterm.name)::text = 'N6_isopentenyladenosine'::text);
  27211. --
  27212. -- Name: n6_methyl_n6_threonylcarbamoyladenosine; Type: VIEW; Schema: so; Owner: -
  27213. --
  27214. CREATE VIEW n6_methyl_n6_threonylcarbamoyladenosine AS
  27215. SELECT feature.feature_id AS n6_methyl_n6_threonylcarbamoyladenosine_id,
  27216. feature.feature_id,
  27217. feature.dbxref_id,
  27218. feature.organism_id,
  27219. feature.name,
  27220. feature.uniquename,
  27221. feature.residues,
  27222. feature.seqlen,
  27223. feature.md5checksum,
  27224. feature.type_id,
  27225. feature.is_analysis,
  27226. feature.is_obsolete,
  27227. feature.timeaccessioned,
  27228. feature.timelastmodified
  27229. FROM (feature
  27230. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27231. WHERE ((cvterm.name)::text = 'N6_methyl_N6_threonylcarbamoyladenosine'::text);
  27232. --
  27233. -- Name: n6_methyladenosine; Type: VIEW; Schema: so; Owner: -
  27234. --
  27235. CREATE VIEW n6_methyladenosine AS
  27236. SELECT feature.feature_id AS n6_methyladenosine_id,
  27237. feature.feature_id,
  27238. feature.dbxref_id,
  27239. feature.organism_id,
  27240. feature.name,
  27241. feature.uniquename,
  27242. feature.residues,
  27243. feature.seqlen,
  27244. feature.md5checksum,
  27245. feature.type_id,
  27246. feature.is_analysis,
  27247. feature.is_obsolete,
  27248. feature.timeaccessioned,
  27249. feature.timelastmodified
  27250. FROM (feature
  27251. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27252. WHERE ((cvterm.name)::text = 'N6_methyladenosine'::text);
  27253. --
  27254. -- Name: n6_n6_2_prime_o_trimethyladenosine; Type: VIEW; Schema: so; Owner: -
  27255. --
  27256. CREATE VIEW n6_n6_2_prime_o_trimethyladenosine AS
  27257. SELECT feature.feature_id AS n6_n6_2_prime_o_trimethyladenosine_id,
  27258. feature.feature_id,
  27259. feature.dbxref_id,
  27260. feature.organism_id,
  27261. feature.name,
  27262. feature.uniquename,
  27263. feature.residues,
  27264. feature.seqlen,
  27265. feature.md5checksum,
  27266. feature.type_id,
  27267. feature.is_analysis,
  27268. feature.is_obsolete,
  27269. feature.timeaccessioned,
  27270. feature.timelastmodified
  27271. FROM (feature
  27272. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27273. WHERE ((cvterm.name)::text = 'N6_N6_2_prime_O_trimethyladenosine'::text);
  27274. --
  27275. -- Name: n6_n6_dimethyladenosine; Type: VIEW; Schema: so; Owner: -
  27276. --
  27277. CREATE VIEW n6_n6_dimethyladenosine AS
  27278. SELECT feature.feature_id AS n6_n6_dimethyladenosine_id,
  27279. feature.feature_id,
  27280. feature.dbxref_id,
  27281. feature.organism_id,
  27282. feature.name,
  27283. feature.uniquename,
  27284. feature.residues,
  27285. feature.seqlen,
  27286. feature.md5checksum,
  27287. feature.type_id,
  27288. feature.is_analysis,
  27289. feature.is_obsolete,
  27290. feature.timeaccessioned,
  27291. feature.timelastmodified
  27292. FROM (feature
  27293. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27294. WHERE ((cvterm.name)::text = 'N6_N6_dimethyladenosine'::text);
  27295. --
  27296. -- Name: n6_threonylcarbamoyladenosine; Type: VIEW; Schema: so; Owner: -
  27297. --
  27298. CREATE VIEW n6_threonylcarbamoyladenosine AS
  27299. SELECT feature.feature_id AS n6_threonylcarbamoyladenosine_id,
  27300. feature.feature_id,
  27301. feature.dbxref_id,
  27302. feature.organism_id,
  27303. feature.name,
  27304. feature.uniquename,
  27305. feature.residues,
  27306. feature.seqlen,
  27307. feature.md5checksum,
  27308. feature.type_id,
  27309. feature.is_analysis,
  27310. feature.is_obsolete,
  27311. feature.timeaccessioned,
  27312. feature.timelastmodified
  27313. FROM (feature
  27314. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27315. WHERE ((cvterm.name)::text = 'N6_threonylcarbamoyladenosine'::text);
  27316. --
  27317. -- Name: n_terminal_region; Type: VIEW; Schema: so; Owner: -
  27318. --
  27319. CREATE VIEW n_terminal_region AS
  27320. SELECT feature.feature_id AS n_terminal_region_id,
  27321. feature.feature_id,
  27322. feature.dbxref_id,
  27323. feature.organism_id,
  27324. feature.name,
  27325. feature.uniquename,
  27326. feature.residues,
  27327. feature.seqlen,
  27328. feature.md5checksum,
  27329. feature.type_id,
  27330. feature.is_analysis,
  27331. feature.is_obsolete,
  27332. feature.timeaccessioned,
  27333. feature.timelastmodified
  27334. FROM (feature
  27335. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27336. WHERE ((cvterm.name)::text = 'n_terminal_region'::text);
  27337. --
  27338. -- Name: natural_plasmid; Type: VIEW; Schema: so; Owner: -
  27339. --
  27340. CREATE VIEW natural_plasmid AS
  27341. SELECT feature.feature_id AS natural_plasmid_id,
  27342. feature.feature_id,
  27343. feature.dbxref_id,
  27344. feature.organism_id,
  27345. feature.name,
  27346. feature.uniquename,
  27347. feature.residues,
  27348. feature.seqlen,
  27349. feature.md5checksum,
  27350. feature.type_id,
  27351. feature.is_analysis,
  27352. feature.is_obsolete,
  27353. feature.timeaccessioned,
  27354. feature.timelastmodified
  27355. FROM (feature
  27356. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27357. WHERE ((cvterm.name)::text = 'natural_plasmid'::text);
  27358. --
  27359. -- Name: natural_transposable_element; Type: VIEW; Schema: so; Owner: -
  27360. --
  27361. CREATE VIEW natural_transposable_element AS
  27362. SELECT feature.feature_id AS natural_transposable_element_id,
  27363. feature.feature_id,
  27364. feature.dbxref_id,
  27365. feature.organism_id,
  27366. feature.name,
  27367. feature.uniquename,
  27368. feature.residues,
  27369. feature.seqlen,
  27370. feature.md5checksum,
  27371. feature.type_id,
  27372. feature.is_analysis,
  27373. feature.is_obsolete,
  27374. feature.timeaccessioned,
  27375. feature.timelastmodified
  27376. FROM (feature
  27377. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27378. WHERE ((cvterm.name)::text = 'natural_transposable_element'::text);
  27379. --
  27380. -- Name: natural_variant_site; Type: VIEW; Schema: so; Owner: -
  27381. --
  27382. CREATE VIEW natural_variant_site AS
  27383. SELECT feature.feature_id AS natural_variant_site_id,
  27384. feature.feature_id,
  27385. feature.dbxref_id,
  27386. feature.organism_id,
  27387. feature.name,
  27388. feature.uniquename,
  27389. feature.residues,
  27390. feature.seqlen,
  27391. feature.md5checksum,
  27392. feature.type_id,
  27393. feature.is_analysis,
  27394. feature.is_obsolete,
  27395. feature.timeaccessioned,
  27396. feature.timelastmodified
  27397. FROM (feature
  27398. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27399. WHERE ((cvterm.name)::text = 'natural_variant_site'::text);
  27400. --
  27401. -- Name: nc_conserved_region; Type: VIEW; Schema: so; Owner: -
  27402. --
  27403. CREATE VIEW nc_conserved_region AS
  27404. SELECT feature.feature_id AS nc_conserved_region_id,
  27405. feature.feature_id,
  27406. feature.dbxref_id,
  27407. feature.organism_id,
  27408. feature.name,
  27409. feature.uniquename,
  27410. feature.residues,
  27411. feature.seqlen,
  27412. feature.md5checksum,
  27413. feature.type_id,
  27414. feature.is_analysis,
  27415. feature.is_obsolete,
  27416. feature.timeaccessioned,
  27417. feature.timelastmodified
  27418. FROM (feature
  27419. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27420. WHERE ((cvterm.name)::text = 'nc_conserved_region'::text);
  27421. --
  27422. -- Name: nc_primary_transcript; Type: VIEW; Schema: so; Owner: -
  27423. --
  27424. CREATE VIEW nc_primary_transcript AS
  27425. SELECT feature.feature_id AS nc_primary_transcript_id,
  27426. feature.feature_id,
  27427. feature.dbxref_id,
  27428. feature.organism_id,
  27429. feature.name,
  27430. feature.uniquename,
  27431. feature.residues,
  27432. feature.seqlen,
  27433. feature.md5checksum,
  27434. feature.type_id,
  27435. feature.is_analysis,
  27436. feature.is_obsolete,
  27437. feature.timeaccessioned,
  27438. feature.timelastmodified
  27439. FROM (feature
  27440. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27441. WHERE (((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'scRNA_primary_transcript'::text) OR ((cvterm.name)::text = 'rRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tmRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'SRP_RNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'miRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tasiRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_small_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_large_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'alanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'arginine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'asparagine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'aspartic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'cysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glycine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'histidine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'isoleucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'leucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'lysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methionine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'phenylalanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'proline_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'serine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'threonine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tryptophan_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tyrosine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'valine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'pyrrolysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'selenocysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'U14_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'stRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'nc_primary_transcript'::text));
  27442. --
  27443. -- Name: nc_transcript_variant; Type: VIEW; Schema: so; Owner: -
  27444. --
  27445. CREATE VIEW nc_transcript_variant AS
  27446. SELECT feature.feature_id AS nc_transcript_variant_id,
  27447. feature.feature_id,
  27448. feature.dbxref_id,
  27449. feature.organism_id,
  27450. feature.name,
  27451. feature.uniquename,
  27452. feature.residues,
  27453. feature.seqlen,
  27454. feature.md5checksum,
  27455. feature.type_id,
  27456. feature.is_analysis,
  27457. feature.is_obsolete,
  27458. feature.timeaccessioned,
  27459. feature.timelastmodified
  27460. FROM (feature
  27461. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27462. WHERE (((cvterm.name)::text = 'mature_miRNA_variant'::text) OR ((cvterm.name)::text = 'nc_transcript_variant'::text));
  27463. --
  27464. -- Name: ncrna; Type: VIEW; Schema: so; Owner: -
  27465. --
  27466. CREATE VIEW ncrna AS
  27467. SELECT feature.feature_id AS ncrna_id,
  27468. feature.feature_id,
  27469. feature.dbxref_id,
  27470. feature.organism_id,
  27471. feature.name,
  27472. feature.uniquename,
  27473. feature.residues,
  27474. feature.seqlen,
  27475. feature.md5checksum,
  27476. feature.type_id,
  27477. feature.is_analysis,
  27478. feature.is_obsolete,
  27479. feature.timeaccessioned,
  27480. feature.timelastmodified
  27481. FROM (feature
  27482. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27483. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'scRNA'::text) OR ((cvterm.name)::text = 'rRNA'::text)) OR ((cvterm.name)::text = 'tRNA'::text)) OR ((cvterm.name)::text = 'snRNA'::text)) OR ((cvterm.name)::text = 'snoRNA'::text)) OR ((cvterm.name)::text = 'small_regulatory_ncRNA'::text)) OR ((cvterm.name)::text = 'RNase_MRP_RNA'::text)) OR ((cvterm.name)::text = 'RNase_P_RNA'::text)) OR ((cvterm.name)::text = 'telomerase_RNA'::text)) OR ((cvterm.name)::text = 'vault_RNA'::text)) OR ((cvterm.name)::text = 'Y_RNA'::text)) OR ((cvterm.name)::text = 'rasiRNA'::text)) OR ((cvterm.name)::text = 'SRP_RNA'::text)) OR ((cvterm.name)::text = 'guide_RNA'::text)) OR ((cvterm.name)::text = 'antisense_RNA'::text)) OR ((cvterm.name)::text = 'siRNA'::text)) OR ((cvterm.name)::text = 'stRNA'::text)) OR ((cvterm.name)::text = 'class_II_RNA'::text)) OR ((cvterm.name)::text = 'class_I_RNA'::text)) OR ((cvterm.name)::text = 'piRNA'::text)) OR ((cvterm.name)::text = 'lincRNA'::text)) OR ((cvterm.name)::text = 'tasiRNA'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_RNA'::text)) OR ((cvterm.name)::text = 'small_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'large_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'rRNA_18S'::text)) OR ((cvterm.name)::text = 'rRNA_16S'::text)) OR ((cvterm.name)::text = 'rRNA_5_8S'::text)) OR ((cvterm.name)::text = 'rRNA_5S'::text)) OR ((cvterm.name)::text = 'rRNA_28S'::text)) OR ((cvterm.name)::text = 'rRNA_23S'::text)) OR ((cvterm.name)::text = 'rRNA_25S'::text)) OR ((cvterm.name)::text = 'rRNA_21S'::text)) OR ((cvterm.name)::text = 'alanyl_tRNA'::text)) OR ((cvterm.name)::text = 'asparaginyl_tRNA'::text)) OR ((cvterm.name)::text = 'aspartyl_tRNA'::text)) OR ((cvterm.name)::text = 'cysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutaminyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutamyl_tRNA'::text)) OR ((cvterm.name)::text = 'glycyl_tRNA'::text)) OR ((cvterm.name)::text = 'histidyl_tRNA'::text)) OR ((cvterm.name)::text = 'isoleucyl_tRNA'::text)) OR ((cvterm.name)::text = 'leucyl_tRNA'::text)) OR ((cvterm.name)::text = 'lysyl_tRNA'::text)) OR ((cvterm.name)::text = 'methionyl_tRNA'::text)) OR ((cvterm.name)::text = 'phenylalanyl_tRNA'::text)) OR ((cvterm.name)::text = 'prolyl_tRNA'::text)) OR ((cvterm.name)::text = 'seryl_tRNA'::text)) OR ((cvterm.name)::text = 'threonyl_tRNA'::text)) OR ((cvterm.name)::text = 'tryptophanyl_tRNA'::text)) OR ((cvterm.name)::text = 'tyrosyl_tRNA'::text)) OR ((cvterm.name)::text = 'valyl_tRNA'::text)) OR ((cvterm.name)::text = 'pyrrolysyl_tRNA'::text)) OR ((cvterm.name)::text = 'arginyl_tRNA'::text)) OR ((cvterm.name)::text = 'selenocysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'U1_snRNA'::text)) OR ((cvterm.name)::text = 'U2_snRNA'::text)) OR ((cvterm.name)::text = 'U4_snRNA'::text)) OR ((cvterm.name)::text = 'U4atac_snRNA'::text)) OR ((cvterm.name)::text = 'U5_snRNA'::text)) OR ((cvterm.name)::text = 'U6_snRNA'::text)) OR ((cvterm.name)::text = 'U6atac_snRNA'::text)) OR ((cvterm.name)::text = 'U11_snRNA'::text)) OR ((cvterm.name)::text = 'U12_snRNA'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA'::text)) OR ((cvterm.name)::text = 'U14_snoRNA'::text)) OR ((cvterm.name)::text = 'U3_snoRNA'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'pseudouridylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'miRNA'::text)) OR ((cvterm.name)::text = 'RNA_6S'::text)) OR ((cvterm.name)::text = 'CsrB_RsmB_RNA'::text)) OR ((cvterm.name)::text = 'DsrA_RNA'::text)) OR ((cvterm.name)::text = 'OxyS_RNA'::text)) OR ((cvterm.name)::text = 'RprA_RNA'::text)) OR ((cvterm.name)::text = 'RRE_RNA'::text)) OR ((cvterm.name)::text = 'spot_42_RNA'::text)) OR ((cvterm.name)::text = 'tmRNA'::text)) OR ((cvterm.name)::text = 'GcvB_RNA'::text)) OR ((cvterm.name)::text = 'MicF_RNA'::text)) OR ((cvterm.name)::text = 'ncRNA'::text));
  27484. --
  27485. -- Name: ncrna_gene; Type: VIEW; Schema: so; Owner: -
  27486. --
  27487. CREATE VIEW ncrna_gene AS
  27488. SELECT feature.feature_id AS ncrna_gene_id,
  27489. feature.feature_id,
  27490. feature.dbxref_id,
  27491. feature.organism_id,
  27492. feature.name,
  27493. feature.uniquename,
  27494. feature.residues,
  27495. feature.seqlen,
  27496. feature.md5checksum,
  27497. feature.type_id,
  27498. feature.is_analysis,
  27499. feature.is_obsolete,
  27500. feature.timeaccessioned,
  27501. feature.timelastmodified
  27502. FROM (feature
  27503. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27504. WHERE (((((((((((((((((cvterm.name)::text = 'gRNA_gene'::text) OR ((cvterm.name)::text = 'miRNA_gene'::text)) OR ((cvterm.name)::text = 'scRNA_gene'::text)) OR ((cvterm.name)::text = 'snoRNA_gene'::text)) OR ((cvterm.name)::text = 'snRNA_gene'::text)) OR ((cvterm.name)::text = 'SRP_RNA_gene'::text)) OR ((cvterm.name)::text = 'stRNA_gene'::text)) OR ((cvterm.name)::text = 'tmRNA_gene'::text)) OR ((cvterm.name)::text = 'tRNA_gene'::text)) OR ((cvterm.name)::text = 'rRNA_gene'::text)) OR ((cvterm.name)::text = 'piRNA_gene'::text)) OR ((cvterm.name)::text = 'RNase_P_RNA_gene'::text)) OR ((cvterm.name)::text = 'RNase_MRP_RNA_gene'::text)) OR ((cvterm.name)::text = 'lincRNA_gene'::text)) OR ((cvterm.name)::text = 'telomerase_RNA_gene'::text)) OR ((cvterm.name)::text = 'ncRNA_gene'::text));
  27505. --
  27506. -- Name: ndm2_motif; Type: VIEW; Schema: so; Owner: -
  27507. --
  27508. CREATE VIEW ndm2_motif AS
  27509. SELECT feature.feature_id AS ndm2_motif_id,
  27510. feature.feature_id,
  27511. feature.dbxref_id,
  27512. feature.organism_id,
  27513. feature.name,
  27514. feature.uniquename,
  27515. feature.residues,
  27516. feature.seqlen,
  27517. feature.md5checksum,
  27518. feature.type_id,
  27519. feature.is_analysis,
  27520. feature.is_obsolete,
  27521. feature.timeaccessioned,
  27522. feature.timelastmodified
  27523. FROM (feature
  27524. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27525. WHERE ((cvterm.name)::text = 'NDM2_motif'::text);
  27526. --
  27527. -- Name: ndm3_motif; Type: VIEW; Schema: so; Owner: -
  27528. --
  27529. CREATE VIEW ndm3_motif AS
  27530. SELECT feature.feature_id AS ndm3_motif_id,
  27531. feature.feature_id,
  27532. feature.dbxref_id,
  27533. feature.organism_id,
  27534. feature.name,
  27535. feature.uniquename,
  27536. feature.residues,
  27537. feature.seqlen,
  27538. feature.md5checksum,
  27539. feature.type_id,
  27540. feature.is_analysis,
  27541. feature.is_obsolete,
  27542. feature.timeaccessioned,
  27543. feature.timelastmodified
  27544. FROM (feature
  27545. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27546. WHERE ((cvterm.name)::text = 'NDM3_motif'::text);
  27547. --
  27548. -- Name: negative_sense_ssrna_viral_sequence; Type: VIEW; Schema: so; Owner: -
  27549. --
  27550. CREATE VIEW negative_sense_ssrna_viral_sequence AS
  27551. SELECT feature.feature_id AS negative_sense_ssrna_viral_sequence_id,
  27552. feature.feature_id,
  27553. feature.dbxref_id,
  27554. feature.organism_id,
  27555. feature.name,
  27556. feature.uniquename,
  27557. feature.residues,
  27558. feature.seqlen,
  27559. feature.md5checksum,
  27560. feature.type_id,
  27561. feature.is_analysis,
  27562. feature.is_obsolete,
  27563. feature.timeaccessioned,
  27564. feature.timelastmodified
  27565. FROM (feature
  27566. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27567. WHERE ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text);
  27568. --
  27569. -- Name: negatively_autoregulated; Type: VIEW; Schema: so; Owner: -
  27570. --
  27571. CREATE VIEW negatively_autoregulated AS
  27572. SELECT feature.feature_id AS negatively_autoregulated_id,
  27573. feature.feature_id,
  27574. feature.dbxref_id,
  27575. feature.organism_id,
  27576. feature.name,
  27577. feature.uniquename,
  27578. feature.residues,
  27579. feature.seqlen,
  27580. feature.md5checksum,
  27581. feature.type_id,
  27582. feature.is_analysis,
  27583. feature.is_obsolete,
  27584. feature.timeaccessioned,
  27585. feature.timelastmodified
  27586. FROM (feature
  27587. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27588. WHERE ((cvterm.name)::text = 'negatively_autoregulated'::text);
  27589. --
  27590. -- Name: negatively_autoregulated_gene; Type: VIEW; Schema: so; Owner: -
  27591. --
  27592. CREATE VIEW negatively_autoregulated_gene AS
  27593. SELECT feature.feature_id AS negatively_autoregulated_gene_id,
  27594. feature.feature_id,
  27595. feature.dbxref_id,
  27596. feature.organism_id,
  27597. feature.name,
  27598. feature.uniquename,
  27599. feature.residues,
  27600. feature.seqlen,
  27601. feature.md5checksum,
  27602. feature.type_id,
  27603. feature.is_analysis,
  27604. feature.is_obsolete,
  27605. feature.timeaccessioned,
  27606. feature.timelastmodified
  27607. FROM (feature
  27608. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27609. WHERE ((cvterm.name)::text = 'negatively_autoregulated_gene'::text);
  27610. --
  27611. -- Name: nested_repeat; Type: VIEW; Schema: so; Owner: -
  27612. --
  27613. CREATE VIEW nested_repeat AS
  27614. SELECT feature.feature_id AS nested_repeat_id,
  27615. feature.feature_id,
  27616. feature.dbxref_id,
  27617. feature.organism_id,
  27618. feature.name,
  27619. feature.uniquename,
  27620. feature.residues,
  27621. feature.seqlen,
  27622. feature.md5checksum,
  27623. feature.type_id,
  27624. feature.is_analysis,
  27625. feature.is_obsolete,
  27626. feature.timeaccessioned,
  27627. feature.timelastmodified
  27628. FROM (feature
  27629. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27630. WHERE (((cvterm.name)::text = 'nested_tandem_repeat'::text) OR ((cvterm.name)::text = 'nested_repeat'::text));
  27631. --
  27632. -- Name: nested_tandem_repeat; Type: VIEW; Schema: so; Owner: -
  27633. --
  27634. CREATE VIEW nested_tandem_repeat AS
  27635. SELECT feature.feature_id AS nested_tandem_repeat_id,
  27636. feature.feature_id,
  27637. feature.dbxref_id,
  27638. feature.organism_id,
  27639. feature.name,
  27640. feature.uniquename,
  27641. feature.residues,
  27642. feature.seqlen,
  27643. feature.md5checksum,
  27644. feature.type_id,
  27645. feature.is_analysis,
  27646. feature.is_obsolete,
  27647. feature.timeaccessioned,
  27648. feature.timelastmodified
  27649. FROM (feature
  27650. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27651. WHERE ((cvterm.name)::text = 'nested_tandem_repeat'::text);
  27652. --
  27653. -- Name: nested_transposon; Type: VIEW; Schema: so; Owner: -
  27654. --
  27655. CREATE VIEW nested_transposon AS
  27656. SELECT feature.feature_id AS nested_transposon_id,
  27657. feature.feature_id,
  27658. feature.dbxref_id,
  27659. feature.organism_id,
  27660. feature.name,
  27661. feature.uniquename,
  27662. feature.residues,
  27663. feature.seqlen,
  27664. feature.md5checksum,
  27665. feature.type_id,
  27666. feature.is_analysis,
  27667. feature.is_obsolete,
  27668. feature.timeaccessioned,
  27669. feature.timelastmodified
  27670. FROM (feature
  27671. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27672. WHERE ((cvterm.name)::text = 'nested_transposon'::text);
  27673. --
  27674. -- Name: nmd_transcript_variant; Type: VIEW; Schema: so; Owner: -
  27675. --
  27676. CREATE VIEW nmd_transcript_variant AS
  27677. SELECT feature.feature_id AS nmd_transcript_variant_id,
  27678. feature.feature_id,
  27679. feature.dbxref_id,
  27680. feature.organism_id,
  27681. feature.name,
  27682. feature.uniquename,
  27683. feature.residues,
  27684. feature.seqlen,
  27685. feature.md5checksum,
  27686. feature.type_id,
  27687. feature.is_analysis,
  27688. feature.is_obsolete,
  27689. feature.timeaccessioned,
  27690. feature.timelastmodified
  27691. FROM (feature
  27692. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27693. WHERE ((cvterm.name)::text = 'NMD_transcript_variant'::text);
  27694. --
  27695. -- Name: no_output; Type: VIEW; Schema: so; Owner: -
  27696. --
  27697. CREATE VIEW no_output AS
  27698. SELECT feature.feature_id AS no_output_id,
  27699. feature.feature_id,
  27700. feature.dbxref_id,
  27701. feature.organism_id,
  27702. feature.name,
  27703. feature.uniquename,
  27704. feature.residues,
  27705. feature.seqlen,
  27706. feature.md5checksum,
  27707. feature.type_id,
  27708. feature.is_analysis,
  27709. feature.is_obsolete,
  27710. feature.timeaccessioned,
  27711. feature.timelastmodified
  27712. FROM (feature
  27713. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27714. WHERE ((cvterm.name)::text = 'no_output'::text);
  27715. --
  27716. -- Name: non_adjacent_residues; Type: VIEW; Schema: so; Owner: -
  27717. --
  27718. CREATE VIEW non_adjacent_residues AS
  27719. SELECT feature.feature_id AS non_adjacent_residues_id,
  27720. feature.feature_id,
  27721. feature.dbxref_id,
  27722. feature.organism_id,
  27723. feature.name,
  27724. feature.uniquename,
  27725. feature.residues,
  27726. feature.seqlen,
  27727. feature.md5checksum,
  27728. feature.type_id,
  27729. feature.is_analysis,
  27730. feature.is_obsolete,
  27731. feature.timeaccessioned,
  27732. feature.timelastmodified
  27733. FROM (feature
  27734. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27735. WHERE ((cvterm.name)::text = 'non_adjacent_residues'::text);
  27736. --
  27737. -- Name: non_canonical_five_prime_splice_site; Type: VIEW; Schema: so; Owner: -
  27738. --
  27739. CREATE VIEW non_canonical_five_prime_splice_site AS
  27740. SELECT feature.feature_id AS non_canonical_five_prime_splice_site_id,
  27741. feature.feature_id,
  27742. feature.dbxref_id,
  27743. feature.organism_id,
  27744. feature.name,
  27745. feature.uniquename,
  27746. feature.residues,
  27747. feature.seqlen,
  27748. feature.md5checksum,
  27749. feature.type_id,
  27750. feature.is_analysis,
  27751. feature.is_obsolete,
  27752. feature.timeaccessioned,
  27753. feature.timelastmodified
  27754. FROM (feature
  27755. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27756. WHERE ((cvterm.name)::text = 'non_canonical_five_prime_splice_site'::text);
  27757. --
  27758. -- Name: non_canonical_start_codon; Type: VIEW; Schema: so; Owner: -
  27759. --
  27760. CREATE VIEW non_canonical_start_codon AS
  27761. SELECT feature.feature_id AS non_canonical_start_codon_id,
  27762. feature.feature_id,
  27763. feature.dbxref_id,
  27764. feature.organism_id,
  27765. feature.name,
  27766. feature.uniquename,
  27767. feature.residues,
  27768. feature.seqlen,
  27769. feature.md5checksum,
  27770. feature.type_id,
  27771. feature.is_analysis,
  27772. feature.is_obsolete,
  27773. feature.timeaccessioned,
  27774. feature.timelastmodified
  27775. FROM (feature
  27776. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27777. WHERE ((((cvterm.name)::text = 'four_bp_start_codon'::text) OR ((cvterm.name)::text = 'CTG_start_codon'::text)) OR ((cvterm.name)::text = 'non_canonical_start_codon'::text));
  27778. --
  27779. -- Name: non_canonical_three_prime_splice_site; Type: VIEW; Schema: so; Owner: -
  27780. --
  27781. CREATE VIEW non_canonical_three_prime_splice_site AS
  27782. SELECT feature.feature_id AS non_canonical_three_prime_splice_site_id,
  27783. feature.feature_id,
  27784. feature.dbxref_id,
  27785. feature.organism_id,
  27786. feature.name,
  27787. feature.uniquename,
  27788. feature.residues,
  27789. feature.seqlen,
  27790. feature.md5checksum,
  27791. feature.type_id,
  27792. feature.is_analysis,
  27793. feature.is_obsolete,
  27794. feature.timeaccessioned,
  27795. feature.timelastmodified
  27796. FROM (feature
  27797. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27798. WHERE ((cvterm.name)::text = 'non_canonical_three_prime_splice_site'::text);
  27799. --
  27800. -- Name: non_coding_exon_variant; Type: VIEW; Schema: so; Owner: -
  27801. --
  27802. CREATE VIEW non_coding_exon_variant AS
  27803. SELECT feature.feature_id AS non_coding_exon_variant_id,
  27804. feature.feature_id,
  27805. feature.dbxref_id,
  27806. feature.organism_id,
  27807. feature.name,
  27808. feature.uniquename,
  27809. feature.residues,
  27810. feature.seqlen,
  27811. feature.md5checksum,
  27812. feature.type_id,
  27813. feature.is_analysis,
  27814. feature.is_obsolete,
  27815. feature.timeaccessioned,
  27816. feature.timelastmodified
  27817. FROM (feature
  27818. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27819. WHERE ((cvterm.name)::text = 'non_coding_exon_variant'::text);
  27820. --
  27821. -- Name: non_conservative_amino_acid_substitution; Type: VIEW; Schema: so; Owner: -
  27822. --
  27823. CREATE VIEW non_conservative_amino_acid_substitution AS
  27824. SELECT feature.feature_id AS non_conservative_amino_acid_substitution_id,
  27825. feature.feature_id,
  27826. feature.dbxref_id,
  27827. feature.organism_id,
  27828. feature.name,
  27829. feature.uniquename,
  27830. feature.residues,
  27831. feature.seqlen,
  27832. feature.md5checksum,
  27833. feature.type_id,
  27834. feature.is_analysis,
  27835. feature.is_obsolete,
  27836. feature.timeaccessioned,
  27837. feature.timelastmodified
  27838. FROM (feature
  27839. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27840. WHERE ((cvterm.name)::text = 'non_conservative_amino_acid_substitution'::text);
  27841. --
  27842. -- Name: non_conservative_missense_codon; Type: VIEW; Schema: so; Owner: -
  27843. --
  27844. CREATE VIEW non_conservative_missense_codon AS
  27845. SELECT feature.feature_id AS non_conservative_missense_codon_id,
  27846. feature.feature_id,
  27847. feature.dbxref_id,
  27848. feature.organism_id,
  27849. feature.name,
  27850. feature.uniquename,
  27851. feature.residues,
  27852. feature.seqlen,
  27853. feature.md5checksum,
  27854. feature.type_id,
  27855. feature.is_analysis,
  27856. feature.is_obsolete,
  27857. feature.timeaccessioned,
  27858. feature.timelastmodified
  27859. FROM (feature
  27860. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27861. WHERE ((cvterm.name)::text = 'non_conservative_missense_codon'::text);
  27862. --
  27863. -- Name: non_cytoplasmic_polypeptide_region; Type: VIEW; Schema: so; Owner: -
  27864. --
  27865. CREATE VIEW non_cytoplasmic_polypeptide_region AS
  27866. SELECT feature.feature_id AS non_cytoplasmic_polypeptide_region_id,
  27867. feature.feature_id,
  27868. feature.dbxref_id,
  27869. feature.organism_id,
  27870. feature.name,
  27871. feature.uniquename,
  27872. feature.residues,
  27873. feature.seqlen,
  27874. feature.md5checksum,
  27875. feature.type_id,
  27876. feature.is_analysis,
  27877. feature.is_obsolete,
  27878. feature.timeaccessioned,
  27879. feature.timelastmodified
  27880. FROM (feature
  27881. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27882. WHERE ((cvterm.name)::text = 'non_cytoplasmic_polypeptide_region'::text);
  27883. --
  27884. -- Name: non_ltr_retrotransposon; Type: VIEW; Schema: so; Owner: -
  27885. --
  27886. CREATE VIEW non_ltr_retrotransposon AS
  27887. SELECT feature.feature_id AS non_ltr_retrotransposon_id,
  27888. feature.feature_id,
  27889. feature.dbxref_id,
  27890. feature.organism_id,
  27891. feature.name,
  27892. feature.uniquename,
  27893. feature.residues,
  27894. feature.seqlen,
  27895. feature.md5checksum,
  27896. feature.type_id,
  27897. feature.is_analysis,
  27898. feature.is_obsolete,
  27899. feature.timeaccessioned,
  27900. feature.timelastmodified
  27901. FROM (feature
  27902. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27903. WHERE ((((cvterm.name)::text = 'LINE_element'::text) OR ((cvterm.name)::text = 'SINE_element'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon'::text));
  27904. --
  27905. -- Name: non_ltr_retrotransposon_polymeric_tract; Type: VIEW; Schema: so; Owner: -
  27906. --
  27907. CREATE VIEW non_ltr_retrotransposon_polymeric_tract AS
  27908. SELECT feature.feature_id AS non_ltr_retrotransposon_polymeric_tract_id,
  27909. feature.feature_id,
  27910. feature.dbxref_id,
  27911. feature.organism_id,
  27912. feature.name,
  27913. feature.uniquename,
  27914. feature.residues,
  27915. feature.seqlen,
  27916. feature.md5checksum,
  27917. feature.type_id,
  27918. feature.is_analysis,
  27919. feature.is_obsolete,
  27920. feature.timeaccessioned,
  27921. feature.timelastmodified
  27922. FROM (feature
  27923. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27924. WHERE ((cvterm.name)::text = 'non_LTR_retrotransposon_polymeric_tract'::text);
  27925. --
  27926. -- Name: non_processed_pseudogene; Type: VIEW; Schema: so; Owner: -
  27927. --
  27928. CREATE VIEW non_processed_pseudogene AS
  27929. SELECT feature.feature_id AS non_processed_pseudogene_id,
  27930. feature.feature_id,
  27931. feature.dbxref_id,
  27932. feature.organism_id,
  27933. feature.name,
  27934. feature.uniquename,
  27935. feature.residues,
  27936. feature.seqlen,
  27937. feature.md5checksum,
  27938. feature.type_id,
  27939. feature.is_analysis,
  27940. feature.is_obsolete,
  27941. feature.timeaccessioned,
  27942. feature.timelastmodified
  27943. FROM (feature
  27944. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27945. WHERE (((((((cvterm.name)::text = 'pseudogene_by_unequal_crossing_over'::text) OR ((cvterm.name)::text = 'nuclear_mt_pseudogene'::text)) OR ((cvterm.name)::text = 'cassette_pseudogene'::text)) OR ((cvterm.name)::text = 'duplicated_pseudogene'::text)) OR ((cvterm.name)::text = 'unitary_pseudogene'::text)) OR ((cvterm.name)::text = 'non_processed_pseudogene'::text));
  27946. --
  27947. -- Name: non_protein_coding; Type: VIEW; Schema: so; Owner: -
  27948. --
  27949. CREATE VIEW non_protein_coding AS
  27950. SELECT feature.feature_id AS non_protein_coding_id,
  27951. feature.feature_id,
  27952. feature.dbxref_id,
  27953. feature.organism_id,
  27954. feature.name,
  27955. feature.uniquename,
  27956. feature.residues,
  27957. feature.seqlen,
  27958. feature.md5checksum,
  27959. feature.type_id,
  27960. feature.is_analysis,
  27961. feature.is_obsolete,
  27962. feature.timeaccessioned,
  27963. feature.timelastmodified
  27964. FROM (feature
  27965. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27966. WHERE ((((((((((((((cvterm.name)::text = 'miRNA_encoding'::text) OR ((cvterm.name)::text = 'rRNA_encoding'::text)) OR ((cvterm.name)::text = 'scRNA_encoding'::text)) OR ((cvterm.name)::text = 'snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'snRNA_encoding'::text)) OR ((cvterm.name)::text = 'SRP_RNA_encoding'::text)) OR ((cvterm.name)::text = 'stRNA_encoding'::text)) OR ((cvterm.name)::text = 'tmRNA_encoding'::text)) OR ((cvterm.name)::text = 'tRNA_encoding'::text)) OR ((cvterm.name)::text = 'gRNA_encoding'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'non_protein_coding'::text));
  27967. --
  27968. -- Name: non_synonymous_codon; Type: VIEW; Schema: so; Owner: -
  27969. --
  27970. CREATE VIEW non_synonymous_codon AS
  27971. SELECT feature.feature_id AS non_synonymous_codon_id,
  27972. feature.feature_id,
  27973. feature.dbxref_id,
  27974. feature.organism_id,
  27975. feature.name,
  27976. feature.uniquename,
  27977. feature.residues,
  27978. feature.seqlen,
  27979. feature.md5checksum,
  27980. feature.type_id,
  27981. feature.is_analysis,
  27982. feature.is_obsolete,
  27983. feature.timeaccessioned,
  27984. feature.timelastmodified
  27985. FROM (feature
  27986. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  27987. WHERE ((((((cvterm.name)::text = 'stop_gained'::text) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_synonymous_codon'::text));
  27988. --
  27989. -- Name: non_terminal_residue; Type: VIEW; Schema: so; Owner: -
  27990. --
  27991. CREATE VIEW non_terminal_residue AS
  27992. SELECT feature.feature_id AS non_terminal_residue_id,
  27993. feature.feature_id,
  27994. feature.dbxref_id,
  27995. feature.organism_id,
  27996. feature.name,
  27997. feature.uniquename,
  27998. feature.residues,
  27999. feature.seqlen,
  28000. feature.md5checksum,
  28001. feature.type_id,
  28002. feature.is_analysis,
  28003. feature.is_obsolete,
  28004. feature.timeaccessioned,
  28005. feature.timelastmodified
  28006. FROM (feature
  28007. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28008. WHERE ((cvterm.name)::text = 'non_terminal_residue'::text);
  28009. --
  28010. -- Name: non_transcribed_region; Type: VIEW; Schema: so; Owner: -
  28011. --
  28012. CREATE VIEW non_transcribed_region AS
  28013. SELECT feature.feature_id AS non_transcribed_region_id,
  28014. feature.feature_id,
  28015. feature.dbxref_id,
  28016. feature.organism_id,
  28017. feature.name,
  28018. feature.uniquename,
  28019. feature.residues,
  28020. feature.seqlen,
  28021. feature.md5checksum,
  28022. feature.type_id,
  28023. feature.is_analysis,
  28024. feature.is_obsolete,
  28025. feature.timeaccessioned,
  28026. feature.timelastmodified
  28027. FROM (feature
  28028. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28029. WHERE ((cvterm.name)::text = 'non_transcribed_region'::text);
  28030. --
  28031. -- Name: nonamer_of_recombination_feature_of_vertebrate_im_sys_gene; Type: VIEW; Schema: so; Owner: -
  28032. --
  28033. CREATE VIEW nonamer_of_recombination_feature_of_vertebrate_im_sys_gene AS
  28034. SELECT feature.feature_id AS nonamer_of_recombination_feature_of_vertebrate_im_sys_gene_id,
  28035. feature.feature_id,
  28036. feature.dbxref_id,
  28037. feature.organism_id,
  28038. feature.name,
  28039. feature.uniquename,
  28040. feature.residues,
  28041. feature.seqlen,
  28042. feature.md5checksum,
  28043. feature.type_id,
  28044. feature.is_analysis,
  28045. feature.is_obsolete,
  28046. feature.timeaccessioned,
  28047. feature.timelastmodified
  28048. FROM (feature
  28049. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28050. WHERE ((((((cvterm.name)::text = 'three_prime_D_nonamer'::text) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text));
  28051. --
  28052. -- Name: noncoding_exon; Type: VIEW; Schema: so; Owner: -
  28053. --
  28054. CREATE VIEW noncoding_exon AS
  28055. SELECT feature.feature_id AS noncoding_exon_id,
  28056. feature.feature_id,
  28057. feature.dbxref_id,
  28058. feature.organism_id,
  28059. feature.name,
  28060. feature.uniquename,
  28061. feature.residues,
  28062. feature.seqlen,
  28063. feature.md5checksum,
  28064. feature.type_id,
  28065. feature.is_analysis,
  28066. feature.is_obsolete,
  28067. feature.timeaccessioned,
  28068. feature.timelastmodified
  28069. FROM (feature
  28070. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28071. WHERE ((((cvterm.name)::text = 'three_prime_noncoding_exon'::text) OR ((cvterm.name)::text = 'five_prime_noncoding_exon'::text)) OR ((cvterm.name)::text = 'noncoding_exon'::text));
  28072. --
  28073. -- Name: noncoding_region_of_exon; Type: VIEW; Schema: so; Owner: -
  28074. --
  28075. CREATE VIEW noncoding_region_of_exon AS
  28076. SELECT feature.feature_id AS noncoding_region_of_exon_id,
  28077. feature.feature_id,
  28078. feature.dbxref_id,
  28079. feature.organism_id,
  28080. feature.name,
  28081. feature.uniquename,
  28082. feature.residues,
  28083. feature.seqlen,
  28084. feature.md5checksum,
  28085. feature.type_id,
  28086. feature.is_analysis,
  28087. feature.is_obsolete,
  28088. feature.timeaccessioned,
  28089. feature.timelastmodified
  28090. FROM (feature
  28091. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28092. WHERE ((((cvterm.name)::text = 'three_prime_coding_exon_noncoding_region'::text) OR ((cvterm.name)::text = 'five_prime_coding_exon_noncoding_region'::text)) OR ((cvterm.name)::text = 'noncoding_region_of_exon'::text));
  28093. --
  28094. -- Name: noncontiguous_finished; Type: VIEW; Schema: so; Owner: -
  28095. --
  28096. CREATE VIEW noncontiguous_finished AS
  28097. SELECT feature.feature_id AS noncontiguous_finished_id,
  28098. feature.feature_id,
  28099. feature.dbxref_id,
  28100. feature.organism_id,
  28101. feature.name,
  28102. feature.uniquename,
  28103. feature.residues,
  28104. feature.seqlen,
  28105. feature.md5checksum,
  28106. feature.type_id,
  28107. feature.is_analysis,
  28108. feature.is_obsolete,
  28109. feature.timeaccessioned,
  28110. feature.timelastmodified
  28111. FROM (feature
  28112. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28113. WHERE ((cvterm.name)::text = 'noncontiguous_finished'::text);
  28114. --
  28115. -- Name: nuclear_chromosome; Type: VIEW; Schema: so; Owner: -
  28116. --
  28117. CREATE VIEW nuclear_chromosome AS
  28118. SELECT feature.feature_id AS nuclear_chromosome_id,
  28119. feature.feature_id,
  28120. feature.dbxref_id,
  28121. feature.organism_id,
  28122. feature.name,
  28123. feature.uniquename,
  28124. feature.residues,
  28125. feature.seqlen,
  28126. feature.md5checksum,
  28127. feature.type_id,
  28128. feature.is_analysis,
  28129. feature.is_obsolete,
  28130. feature.timeaccessioned,
  28131. feature.timelastmodified
  28132. FROM (feature
  28133. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28134. WHERE ((cvterm.name)::text = 'nuclear_chromosome'::text);
  28135. --
  28136. -- Name: nuclear_export_signal; Type: VIEW; Schema: so; Owner: -
  28137. --
  28138. CREATE VIEW nuclear_export_signal AS
  28139. SELECT feature.feature_id AS nuclear_export_signal_id,
  28140. feature.feature_id,
  28141. feature.dbxref_id,
  28142. feature.organism_id,
  28143. feature.name,
  28144. feature.uniquename,
  28145. feature.residues,
  28146. feature.seqlen,
  28147. feature.md5checksum,
  28148. feature.type_id,
  28149. feature.is_analysis,
  28150. feature.is_obsolete,
  28151. feature.timeaccessioned,
  28152. feature.timelastmodified
  28153. FROM (feature
  28154. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28155. WHERE ((cvterm.name)::text = 'nuclear_export_signal'::text);
  28156. --
  28157. -- Name: nuclear_gene; Type: VIEW; Schema: so; Owner: -
  28158. --
  28159. CREATE VIEW nuclear_gene AS
  28160. SELECT feature.feature_id AS nuclear_gene_id,
  28161. feature.feature_id,
  28162. feature.dbxref_id,
  28163. feature.organism_id,
  28164. feature.name,
  28165. feature.uniquename,
  28166. feature.residues,
  28167. feature.seqlen,
  28168. feature.md5checksum,
  28169. feature.type_id,
  28170. feature.is_analysis,
  28171. feature.is_obsolete,
  28172. feature.timeaccessioned,
  28173. feature.timelastmodified
  28174. FROM (feature
  28175. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28176. WHERE ((cvterm.name)::text = 'nuclear_gene'::text);
  28177. --
  28178. -- Name: nuclear_localization_signal; Type: VIEW; Schema: so; Owner: -
  28179. --
  28180. CREATE VIEW nuclear_localization_signal AS
  28181. SELECT feature.feature_id AS nuclear_localization_signal_id,
  28182. feature.feature_id,
  28183. feature.dbxref_id,
  28184. feature.organism_id,
  28185. feature.name,
  28186. feature.uniquename,
  28187. feature.residues,
  28188. feature.seqlen,
  28189. feature.md5checksum,
  28190. feature.type_id,
  28191. feature.is_analysis,
  28192. feature.is_obsolete,
  28193. feature.timeaccessioned,
  28194. feature.timelastmodified
  28195. FROM (feature
  28196. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28197. WHERE ((cvterm.name)::text = 'nuclear_localization_signal'::text);
  28198. --
  28199. -- Name: nuclear_mt_pseudogene; Type: VIEW; Schema: so; Owner: -
  28200. --
  28201. CREATE VIEW nuclear_mt_pseudogene AS
  28202. SELECT feature.feature_id AS nuclear_mt_pseudogene_id,
  28203. feature.feature_id,
  28204. feature.dbxref_id,
  28205. feature.organism_id,
  28206. feature.name,
  28207. feature.uniquename,
  28208. feature.residues,
  28209. feature.seqlen,
  28210. feature.md5checksum,
  28211. feature.type_id,
  28212. feature.is_analysis,
  28213. feature.is_obsolete,
  28214. feature.timeaccessioned,
  28215. feature.timelastmodified
  28216. FROM (feature
  28217. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28218. WHERE ((cvterm.name)::text = 'nuclear_mt_pseudogene'::text);
  28219. --
  28220. -- Name: nuclear_rim_localization_signal; Type: VIEW; Schema: so; Owner: -
  28221. --
  28222. CREATE VIEW nuclear_rim_localization_signal AS
  28223. SELECT feature.feature_id AS nuclear_rim_localization_signal_id,
  28224. feature.feature_id,
  28225. feature.dbxref_id,
  28226. feature.organism_id,
  28227. feature.name,
  28228. feature.uniquename,
  28229. feature.residues,
  28230. feature.seqlen,
  28231. feature.md5checksum,
  28232. feature.type_id,
  28233. feature.is_analysis,
  28234. feature.is_obsolete,
  28235. feature.timeaccessioned,
  28236. feature.timelastmodified
  28237. FROM (feature
  28238. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28239. WHERE ((cvterm.name)::text = 'nuclear_rim_localization_signal'::text);
  28240. --
  28241. -- Name: nuclear_sequence; Type: VIEW; Schema: so; Owner: -
  28242. --
  28243. CREATE VIEW nuclear_sequence AS
  28244. SELECT feature.feature_id AS nuclear_sequence_id,
  28245. feature.feature_id,
  28246. feature.dbxref_id,
  28247. feature.organism_id,
  28248. feature.name,
  28249. feature.uniquename,
  28250. feature.residues,
  28251. feature.seqlen,
  28252. feature.md5checksum,
  28253. feature.type_id,
  28254. feature.is_analysis,
  28255. feature.is_obsolete,
  28256. feature.timeaccessioned,
  28257. feature.timelastmodified
  28258. FROM (feature
  28259. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28260. WHERE ((cvterm.name)::text = 'nuclear_sequence'::text);
  28261. --
  28262. -- Name: nuclease_binding_site; Type: VIEW; Schema: so; Owner: -
  28263. --
  28264. CREATE VIEW nuclease_binding_site AS
  28265. SELECT feature.feature_id AS nuclease_binding_site_id,
  28266. feature.feature_id,
  28267. feature.dbxref_id,
  28268. feature.organism_id,
  28269. feature.name,
  28270. feature.uniquename,
  28271. feature.residues,
  28272. feature.seqlen,
  28273. feature.md5checksum,
  28274. feature.type_id,
  28275. feature.is_analysis,
  28276. feature.is_obsolete,
  28277. feature.timeaccessioned,
  28278. feature.timelastmodified
  28279. FROM (feature
  28280. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28281. WHERE ((((((((cvterm.name)::text = 'restriction_enzyme_binding_site'::text) OR ((cvterm.name)::text = 'nuclease_sensitive_site'::text)) OR ((cvterm.name)::text = 'homing_endonuclease_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'group_1_intron_homing_endonuclease_target_region'::text)) OR ((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'nuclease_binding_site'::text));
  28282. --
  28283. -- Name: nuclease_hypersensitive_site; Type: VIEW; Schema: so; Owner: -
  28284. --
  28285. CREATE VIEW nuclease_hypersensitive_site AS
  28286. SELECT feature.feature_id AS nuclease_hypersensitive_site_id,
  28287. feature.feature_id,
  28288. feature.dbxref_id,
  28289. feature.organism_id,
  28290. feature.name,
  28291. feature.uniquename,
  28292. feature.residues,
  28293. feature.seqlen,
  28294. feature.md5checksum,
  28295. feature.type_id,
  28296. feature.is_analysis,
  28297. feature.is_obsolete,
  28298. feature.timeaccessioned,
  28299. feature.timelastmodified
  28300. FROM (feature
  28301. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28302. WHERE (((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text) OR ((cvterm.name)::text = 'nuclease_hypersensitive_site'::text));
  28303. --
  28304. -- Name: nuclease_sensitive_site; Type: VIEW; Schema: so; Owner: -
  28305. --
  28306. CREATE VIEW nuclease_sensitive_site AS
  28307. SELECT feature.feature_id AS nuclease_sensitive_site_id,
  28308. feature.feature_id,
  28309. feature.dbxref_id,
  28310. feature.organism_id,
  28311. feature.name,
  28312. feature.uniquename,
  28313. feature.residues,
  28314. feature.seqlen,
  28315. feature.md5checksum,
  28316. feature.type_id,
  28317. feature.is_analysis,
  28318. feature.is_obsolete,
  28319. feature.timeaccessioned,
  28320. feature.timelastmodified
  28321. FROM (feature
  28322. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28323. WHERE (((((cvterm.name)::text = 'nuclease_hypersensitive_site'::text) OR ((cvterm.name)::text = 'group_1_intron_homing_endonuclease_target_region'::text)) OR ((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'nuclease_sensitive_site'::text));
  28324. --
  28325. -- Name: nucleic_acid; Type: VIEW; Schema: so; Owner: -
  28326. --
  28327. CREATE VIEW nucleic_acid AS
  28328. SELECT feature.feature_id AS nucleic_acid_id,
  28329. feature.feature_id,
  28330. feature.dbxref_id,
  28331. feature.organism_id,
  28332. feature.name,
  28333. feature.uniquename,
  28334. feature.residues,
  28335. feature.seqlen,
  28336. feature.md5checksum,
  28337. feature.type_id,
  28338. feature.is_analysis,
  28339. feature.is_obsolete,
  28340. feature.timeaccessioned,
  28341. feature.timelastmodified
  28342. FROM (feature
  28343. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28344. WHERE (((((((((((((((cvterm.name)::text = 'DNA'::text) OR ((cvterm.name)::text = 'RNA'::text)) OR ((cvterm.name)::text = 'morpholino_backbone'::text)) OR ((cvterm.name)::text = 'PNA'::text)) OR ((cvterm.name)::text = 'LNA'::text)) OR ((cvterm.name)::text = 'TNA'::text)) OR ((cvterm.name)::text = 'GNA'::text)) OR ((cvterm.name)::text = 'cDNA'::text)) OR ((cvterm.name)::text = 'genomic_DNA'::text)) OR ((cvterm.name)::text = 'single_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'double_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'R_GNA'::text)) OR ((cvterm.name)::text = 'S_GNA'::text)) OR ((cvterm.name)::text = 'nucleic_acid'::text));
  28345. --
  28346. -- Name: nucleomorph_gene; Type: VIEW; Schema: so; Owner: -
  28347. --
  28348. CREATE VIEW nucleomorph_gene AS
  28349. SELECT feature.feature_id AS nucleomorph_gene_id,
  28350. feature.feature_id,
  28351. feature.dbxref_id,
  28352. feature.organism_id,
  28353. feature.name,
  28354. feature.uniquename,
  28355. feature.residues,
  28356. feature.seqlen,
  28357. feature.md5checksum,
  28358. feature.type_id,
  28359. feature.is_analysis,
  28360. feature.is_obsolete,
  28361. feature.timeaccessioned,
  28362. feature.timelastmodified
  28363. FROM (feature
  28364. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28365. WHERE ((cvterm.name)::text = 'nucleomorph_gene'::text);
  28366. --
  28367. -- Name: nucleomorphic_chromosome; Type: VIEW; Schema: so; Owner: -
  28368. --
  28369. CREATE VIEW nucleomorphic_chromosome AS
  28370. SELECT feature.feature_id AS nucleomorphic_chromosome_id,
  28371. feature.feature_id,
  28372. feature.dbxref_id,
  28373. feature.organism_id,
  28374. feature.name,
  28375. feature.uniquename,
  28376. feature.residues,
  28377. feature.seqlen,
  28378. feature.md5checksum,
  28379. feature.type_id,
  28380. feature.is_analysis,
  28381. feature.is_obsolete,
  28382. feature.timeaccessioned,
  28383. feature.timelastmodified
  28384. FROM (feature
  28385. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28386. WHERE ((cvterm.name)::text = 'nucleomorphic_chromosome'::text);
  28387. --
  28388. -- Name: nucleomorphic_sequence; Type: VIEW; Schema: so; Owner: -
  28389. --
  28390. CREATE VIEW nucleomorphic_sequence AS
  28391. SELECT feature.feature_id AS nucleomorphic_sequence_id,
  28392. feature.feature_id,
  28393. feature.dbxref_id,
  28394. feature.organism_id,
  28395. feature.name,
  28396. feature.uniquename,
  28397. feature.residues,
  28398. feature.seqlen,
  28399. feature.md5checksum,
  28400. feature.type_id,
  28401. feature.is_analysis,
  28402. feature.is_obsolete,
  28403. feature.timeaccessioned,
  28404. feature.timelastmodified
  28405. FROM (feature
  28406. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28407. WHERE ((cvterm.name)::text = 'nucleomorphic_sequence'::text);
  28408. --
  28409. -- Name: nucleotide_binding_site; Type: VIEW; Schema: so; Owner: -
  28410. --
  28411. CREATE VIEW nucleotide_binding_site AS
  28412. SELECT feature.feature_id AS nucleotide_binding_site_id,
  28413. feature.feature_id,
  28414. feature.dbxref_id,
  28415. feature.organism_id,
  28416. feature.name,
  28417. feature.uniquename,
  28418. feature.residues,
  28419. feature.seqlen,
  28420. feature.md5checksum,
  28421. feature.type_id,
  28422. feature.is_analysis,
  28423. feature.is_obsolete,
  28424. feature.timeaccessioned,
  28425. feature.timelastmodified
  28426. FROM (feature
  28427. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28428. WHERE ((((((cvterm.name)::text = 'miRNA_target_site'::text) OR ((cvterm.name)::text = 'DNA_binding_site'::text)) OR ((cvterm.name)::text = 'primer_binding_site'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'nucleotide_binding_site'::text));
  28429. --
  28430. -- Name: nucleotide_match; Type: VIEW; Schema: so; Owner: -
  28431. --
  28432. CREATE VIEW nucleotide_match AS
  28433. SELECT feature.feature_id AS nucleotide_match_id,
  28434. feature.feature_id,
  28435. feature.dbxref_id,
  28436. feature.organism_id,
  28437. feature.name,
  28438. feature.uniquename,
  28439. feature.residues,
  28440. feature.seqlen,
  28441. feature.md5checksum,
  28442. feature.type_id,
  28443. feature.is_analysis,
  28444. feature.is_obsolete,
  28445. feature.timeaccessioned,
  28446. feature.timelastmodified
  28447. FROM (feature
  28448. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28449. WHERE ((((((((((cvterm.name)::text = 'expressed_sequence_match'::text) OR ((cvterm.name)::text = 'cross_genome_match'::text)) OR ((cvterm.name)::text = 'translated_nucleotide_match'::text)) OR ((cvterm.name)::text = 'primer_match'::text)) OR ((cvterm.name)::text = 'EST_match'::text)) OR ((cvterm.name)::text = 'cDNA_match'::text)) OR ((cvterm.name)::text = 'UST_match'::text)) OR ((cvterm.name)::text = 'RST_match'::text)) OR ((cvterm.name)::text = 'nucleotide_match'::text));
  28450. --
  28451. -- Name: nucleotide_motif; Type: VIEW; Schema: so; Owner: -
  28452. --
  28453. CREATE VIEW nucleotide_motif AS
  28454. SELECT feature.feature_id AS nucleotide_motif_id,
  28455. feature.feature_id,
  28456. feature.dbxref_id,
  28457. feature.organism_id,
  28458. feature.name,
  28459. feature.uniquename,
  28460. feature.residues,
  28461. feature.seqlen,
  28462. feature.md5checksum,
  28463. feature.type_id,
  28464. feature.is_analysis,
  28465. feature.is_obsolete,
  28466. feature.timeaccessioned,
  28467. feature.timelastmodified
  28468. FROM (feature
  28469. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28470. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'DNA_motif'::text) OR ((cvterm.name)::text = 'RNA_motif'::text)) OR ((cvterm.name)::text = 'PSE_motif'::text)) OR ((cvterm.name)::text = 'CAAT_signal'::text)) OR ((cvterm.name)::text = 'minus_10_signal'::text)) OR ((cvterm.name)::text = 'minus_35_signal'::text)) OR ((cvterm.name)::text = 'DRE_motif'::text)) OR ((cvterm.name)::text = 'E_box_motif'::text)) OR ((cvterm.name)::text = 'INR1_motif'::text)) OR ((cvterm.name)::text = 'GAGA_motif'::text)) OR ((cvterm.name)::text = 'octamer_motif'::text)) OR ((cvterm.name)::text = 'retinoic_acid_responsive_element'::text)) OR ((cvterm.name)::text = 'promoter_element'::text)) OR ((cvterm.name)::text = 'DCE_SI'::text)) OR ((cvterm.name)::text = 'DCE_SII'::text)) OR ((cvterm.name)::text = 'DCE_SIII'::text)) OR ((cvterm.name)::text = 'minus_12_signal'::text)) OR ((cvterm.name)::text = 'minus_24_signal'::text)) OR ((cvterm.name)::text = 'GC_rich_promoter_region'::text)) OR ((cvterm.name)::text = 'DMv4_motif'::text)) OR ((cvterm.name)::text = 'DMv5_motif'::text)) OR ((cvterm.name)::text = 'DMv3_motif'::text)) OR ((cvterm.name)::text = 'DMv2_motif'::text)) OR ((cvterm.name)::text = 'DPE1_motif'::text)) OR ((cvterm.name)::text = 'DMv1_motif'::text)) OR ((cvterm.name)::text = 'NDM2_motif'::text)) OR ((cvterm.name)::text = 'NDM3_motif'::text)) OR ((cvterm.name)::text = 'core_promoter_element'::text)) OR ((cvterm.name)::text = 'regulatory_promoter_element'::text)) OR ((cvterm.name)::text = 'INR_motif'::text)) OR ((cvterm.name)::text = 'DPE_motif'::text)) OR ((cvterm.name)::text = 'BREu_motif'::text)) OR ((cvterm.name)::text = 'TATA_box'::text)) OR ((cvterm.name)::text = 'A_box'::text)) OR ((cvterm.name)::text = 'B_box'::text)) OR ((cvterm.name)::text = 'C_box'::text)) OR ((cvterm.name)::text = 'MTE'::text)) OR ((cvterm.name)::text = 'BREd_motif'::text)) OR ((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'proximal_promoter_element'::text)) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'A_minor_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_junction_loop'::text)) OR ((cvterm.name)::text = 'hammerhead_ribozyme'::text)) OR ((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'K_turn_RNA_motif'::text)) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_hook_turn'::text)) OR ((cvterm.name)::text = 'nucleotide_motif'::text));
  28471. --
  28472. -- Name: nucleotide_to_protein_binding_site; Type: VIEW; Schema: so; Owner: -
  28473. --
  28474. CREATE VIEW nucleotide_to_protein_binding_site AS
  28475. SELECT feature.feature_id AS nucleotide_to_protein_binding_site_id,
  28476. feature.feature_id,
  28477. feature.dbxref_id,
  28478. feature.organism_id,
  28479. feature.name,
  28480. feature.uniquename,
  28481. feature.residues,
  28482. feature.seqlen,
  28483. feature.md5checksum,
  28484. feature.type_id,
  28485. feature.is_analysis,
  28486. feature.is_obsolete,
  28487. feature.timeaccessioned,
  28488. feature.timelastmodified
  28489. FROM (feature
  28490. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28491. WHERE (((((((((((((cvterm.name)::text = 'nuclease_binding_site'::text) OR ((cvterm.name)::text = 'TF_binding_site'::text)) OR ((cvterm.name)::text = 'histone_binding_site'::text)) OR ((cvterm.name)::text = 'insulator_binding_site'::text)) OR ((cvterm.name)::text = 'enhancer_binding_site'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_sensitive_site'::text)) OR ((cvterm.name)::text = 'homing_endonuclease_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'group_1_intron_homing_endonuclease_target_region'::text)) OR ((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'nucleotide_to_protein_binding_site'::text));
  28492. --
  28493. -- Name: octamer_motif; Type: VIEW; Schema: so; Owner: -
  28494. --
  28495. CREATE VIEW octamer_motif AS
  28496. SELECT feature.feature_id AS octamer_motif_id,
  28497. feature.feature_id,
  28498. feature.dbxref_id,
  28499. feature.organism_id,
  28500. feature.name,
  28501. feature.uniquename,
  28502. feature.residues,
  28503. feature.seqlen,
  28504. feature.md5checksum,
  28505. feature.type_id,
  28506. feature.is_analysis,
  28507. feature.is_obsolete,
  28508. feature.timeaccessioned,
  28509. feature.timelastmodified
  28510. FROM (feature
  28511. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28512. WHERE ((cvterm.name)::text = 'octamer_motif'::text);
  28513. --
  28514. -- Name: oligo; Type: VIEW; Schema: so; Owner: -
  28515. --
  28516. CREATE VIEW oligo AS
  28517. SELECT feature.feature_id AS oligo_id,
  28518. feature.feature_id,
  28519. feature.dbxref_id,
  28520. feature.organism_id,
  28521. feature.name,
  28522. feature.uniquename,
  28523. feature.residues,
  28524. feature.seqlen,
  28525. feature.md5checksum,
  28526. feature.type_id,
  28527. feature.is_analysis,
  28528. feature.is_obsolete,
  28529. feature.timeaccessioned,
  28530. feature.timelastmodified
  28531. FROM (feature
  28532. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28533. WHERE (((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'aptamer'::text) OR ((cvterm.name)::text = 'probe'::text)) OR ((cvterm.name)::text = 'tag'::text)) OR ((cvterm.name)::text = 'ss_oligo'::text)) OR ((cvterm.name)::text = 'ds_oligo'::text)) OR ((cvterm.name)::text = 'DNAzyme'::text)) OR ((cvterm.name)::text = 'synthetic_oligo'::text)) OR ((cvterm.name)::text = 'DNA_aptamer'::text)) OR ((cvterm.name)::text = 'RNA_aptamer'::text)) OR ((cvterm.name)::text = 'microarray_oligo'::text)) OR ((cvterm.name)::text = 'SAGE_tag'::text)) OR ((cvterm.name)::text = 'STS'::text)) OR ((cvterm.name)::text = 'EST'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'five_prime_EST'::text)) OR ((cvterm.name)::text = 'three_prime_EST'::text)) OR ((cvterm.name)::text = 'UST'::text)) OR ((cvterm.name)::text = 'RST'::text)) OR ((cvterm.name)::text = 'three_prime_UST'::text)) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'three_prime_RST'::text)) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'primer'::text)) OR ((cvterm.name)::text = 'sequencing_primer'::text)) OR ((cvterm.name)::text = 'forward_primer'::text)) OR ((cvterm.name)::text = 'reverse_primer'::text)) OR ((cvterm.name)::text = 'ASPE_primer'::text)) OR ((cvterm.name)::text = 'dCAPS_primer'::text)) OR ((cvterm.name)::text = 'RNAi_reagent'::text)) OR ((cvterm.name)::text = 'DNA_constraint_sequence'::text)) OR ((cvterm.name)::text = 'morpholino_oligo'::text)) OR ((cvterm.name)::text = 'PNA_oligo'::text)) OR ((cvterm.name)::text = 'LNA_oligo'::text)) OR ((cvterm.name)::text = 'TNA_oligo'::text)) OR ((cvterm.name)::text = 'GNA_oligo'::text)) OR ((cvterm.name)::text = 'R_GNA_oligo'::text)) OR ((cvterm.name)::text = 'S_GNA_oligo'::text)) OR ((cvterm.name)::text = 'oligo'::text));
  28534. --
  28535. -- Name: oligo_u_tail; Type: VIEW; Schema: so; Owner: -
  28536. --
  28537. CREATE VIEW oligo_u_tail AS
  28538. SELECT feature.feature_id AS oligo_u_tail_id,
  28539. feature.feature_id,
  28540. feature.dbxref_id,
  28541. feature.organism_id,
  28542. feature.name,
  28543. feature.uniquename,
  28544. feature.residues,
  28545. feature.seqlen,
  28546. feature.md5checksum,
  28547. feature.type_id,
  28548. feature.is_analysis,
  28549. feature.is_obsolete,
  28550. feature.timeaccessioned,
  28551. feature.timelastmodified
  28552. FROM (feature
  28553. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28554. WHERE ((cvterm.name)::text = 'oligo_U_tail'::text);
  28555. --
  28556. -- Name: one_methyl_3_3_amino_three_carboxypropyl_pseudouridine; Type: VIEW; Schema: so; Owner: -
  28557. --
  28558. CREATE VIEW one_methyl_3_3_amino_three_carboxypropyl_pseudouridine AS
  28559. SELECT feature.feature_id AS one_methyl_3_3_amino_three_carboxypropyl_pseudouridine_id,
  28560. feature.feature_id,
  28561. feature.dbxref_id,
  28562. feature.organism_id,
  28563. feature.name,
  28564. feature.uniquename,
  28565. feature.residues,
  28566. feature.seqlen,
  28567. feature.md5checksum,
  28568. feature.type_id,
  28569. feature.is_analysis,
  28570. feature.is_obsolete,
  28571. feature.timeaccessioned,
  28572. feature.timelastmodified
  28573. FROM (feature
  28574. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28575. WHERE ((cvterm.name)::text = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine'::text);
  28576. --
  28577. -- Name: one_methyladenosine; Type: VIEW; Schema: so; Owner: -
  28578. --
  28579. CREATE VIEW one_methyladenosine AS
  28580. SELECT feature.feature_id AS one_methyladenosine_id,
  28581. feature.feature_id,
  28582. feature.dbxref_id,
  28583. feature.organism_id,
  28584. feature.name,
  28585. feature.uniquename,
  28586. feature.residues,
  28587. feature.seqlen,
  28588. feature.md5checksum,
  28589. feature.type_id,
  28590. feature.is_analysis,
  28591. feature.is_obsolete,
  28592. feature.timeaccessioned,
  28593. feature.timelastmodified
  28594. FROM (feature
  28595. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28596. WHERE ((cvterm.name)::text = 'one_methyladenosine'::text);
  28597. --
  28598. -- Name: one_methylguanosine; Type: VIEW; Schema: so; Owner: -
  28599. --
  28600. CREATE VIEW one_methylguanosine AS
  28601. SELECT feature.feature_id AS one_methylguanosine_id,
  28602. feature.feature_id,
  28603. feature.dbxref_id,
  28604. feature.organism_id,
  28605. feature.name,
  28606. feature.uniquename,
  28607. feature.residues,
  28608. feature.seqlen,
  28609. feature.md5checksum,
  28610. feature.type_id,
  28611. feature.is_analysis,
  28612. feature.is_obsolete,
  28613. feature.timeaccessioned,
  28614. feature.timelastmodified
  28615. FROM (feature
  28616. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28617. WHERE ((cvterm.name)::text = 'one_methylguanosine'::text);
  28618. --
  28619. -- Name: one_methylinosine; Type: VIEW; Schema: so; Owner: -
  28620. --
  28621. CREATE VIEW one_methylinosine AS
  28622. SELECT feature.feature_id AS one_methylinosine_id,
  28623. feature.feature_id,
  28624. feature.dbxref_id,
  28625. feature.organism_id,
  28626. feature.name,
  28627. feature.uniquename,
  28628. feature.residues,
  28629. feature.seqlen,
  28630. feature.md5checksum,
  28631. feature.type_id,
  28632. feature.is_analysis,
  28633. feature.is_obsolete,
  28634. feature.timeaccessioned,
  28635. feature.timelastmodified
  28636. FROM (feature
  28637. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28638. WHERE ((cvterm.name)::text = 'one_methylinosine'::text);
  28639. --
  28640. -- Name: one_methylpseudouridine; Type: VIEW; Schema: so; Owner: -
  28641. --
  28642. CREATE VIEW one_methylpseudouridine AS
  28643. SELECT feature.feature_id AS one_methylpseudouridine_id,
  28644. feature.feature_id,
  28645. feature.dbxref_id,
  28646. feature.organism_id,
  28647. feature.name,
  28648. feature.uniquename,
  28649. feature.residues,
  28650. feature.seqlen,
  28651. feature.md5checksum,
  28652. feature.type_id,
  28653. feature.is_analysis,
  28654. feature.is_obsolete,
  28655. feature.timeaccessioned,
  28656. feature.timelastmodified
  28657. FROM (feature
  28658. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28659. WHERE ((cvterm.name)::text = 'one_methylpseudouridine'::text);
  28660. --
  28661. -- Name: one_two_prime_o_dimethyladenosine; Type: VIEW; Schema: so; Owner: -
  28662. --
  28663. CREATE VIEW one_two_prime_o_dimethyladenosine AS
  28664. SELECT feature.feature_id AS one_two_prime_o_dimethyladenosine_id,
  28665. feature.feature_id,
  28666. feature.dbxref_id,
  28667. feature.organism_id,
  28668. feature.name,
  28669. feature.uniquename,
  28670. feature.residues,
  28671. feature.seqlen,
  28672. feature.md5checksum,
  28673. feature.type_id,
  28674. feature.is_analysis,
  28675. feature.is_obsolete,
  28676. feature.timeaccessioned,
  28677. feature.timelastmodified
  28678. FROM (feature
  28679. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28680. WHERE ((cvterm.name)::text = 'one_two_prime_O_dimethyladenosine'::text);
  28681. --
  28682. -- Name: one_two_prime_o_dimethylguanosine; Type: VIEW; Schema: so; Owner: -
  28683. --
  28684. CREATE VIEW one_two_prime_o_dimethylguanosine AS
  28685. SELECT feature.feature_id AS one_two_prime_o_dimethylguanosine_id,
  28686. feature.feature_id,
  28687. feature.dbxref_id,
  28688. feature.organism_id,
  28689. feature.name,
  28690. feature.uniquename,
  28691. feature.residues,
  28692. feature.seqlen,
  28693. feature.md5checksum,
  28694. feature.type_id,
  28695. feature.is_analysis,
  28696. feature.is_obsolete,
  28697. feature.timeaccessioned,
  28698. feature.timelastmodified
  28699. FROM (feature
  28700. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28701. WHERE ((cvterm.name)::text = 'one_two_prime_O_dimethylguanosine'::text);
  28702. --
  28703. -- Name: one_two_prime_o_dimethylinosine; Type: VIEW; Schema: so; Owner: -
  28704. --
  28705. CREATE VIEW one_two_prime_o_dimethylinosine AS
  28706. SELECT feature.feature_id AS one_two_prime_o_dimethylinosine_id,
  28707. feature.feature_id,
  28708. feature.dbxref_id,
  28709. feature.organism_id,
  28710. feature.name,
  28711. feature.uniquename,
  28712. feature.residues,
  28713. feature.seqlen,
  28714. feature.md5checksum,
  28715. feature.type_id,
  28716. feature.is_analysis,
  28717. feature.is_obsolete,
  28718. feature.timeaccessioned,
  28719. feature.timelastmodified
  28720. FROM (feature
  28721. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28722. WHERE ((cvterm.name)::text = 'one_two_prime_O_dimethylinosine'::text);
  28723. --
  28724. -- Name: open_chromatin_region; Type: VIEW; Schema: so; Owner: -
  28725. --
  28726. CREATE VIEW open_chromatin_region AS
  28727. SELECT feature.feature_id AS open_chromatin_region_id,
  28728. feature.feature_id,
  28729. feature.dbxref_id,
  28730. feature.organism_id,
  28731. feature.name,
  28732. feature.uniquename,
  28733. feature.residues,
  28734. feature.seqlen,
  28735. feature.md5checksum,
  28736. feature.type_id,
  28737. feature.is_analysis,
  28738. feature.is_obsolete,
  28739. feature.timeaccessioned,
  28740. feature.timelastmodified
  28741. FROM (feature
  28742. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28743. WHERE ((cvterm.name)::text = 'open_chromatin_region'::text);
  28744. --
  28745. -- Name: operator; Type: VIEW; Schema: so; Owner: -
  28746. --
  28747. CREATE VIEW operator AS
  28748. SELECT feature.feature_id AS operator_id,
  28749. feature.feature_id,
  28750. feature.dbxref_id,
  28751. feature.organism_id,
  28752. feature.name,
  28753. feature.uniquename,
  28754. feature.residues,
  28755. feature.seqlen,
  28756. feature.md5checksum,
  28757. feature.type_id,
  28758. feature.is_analysis,
  28759. feature.is_obsolete,
  28760. feature.timeaccessioned,
  28761. feature.timelastmodified
  28762. FROM (feature
  28763. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28764. WHERE ((cvterm.name)::text = 'operator'::text);
  28765. --
  28766. -- Name: operon; Type: VIEW; Schema: so; Owner: -
  28767. --
  28768. CREATE VIEW operon AS
  28769. SELECT feature.feature_id AS operon_id,
  28770. feature.feature_id,
  28771. feature.dbxref_id,
  28772. feature.organism_id,
  28773. feature.name,
  28774. feature.uniquename,
  28775. feature.residues,
  28776. feature.seqlen,
  28777. feature.md5checksum,
  28778. feature.type_id,
  28779. feature.is_analysis,
  28780. feature.is_obsolete,
  28781. feature.timeaccessioned,
  28782. feature.timelastmodified
  28783. FROM (feature
  28784. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28785. WHERE ((cvterm.name)::text = 'operon'::text);
  28786. --
  28787. -- Name: operon_member; Type: VIEW; Schema: so; Owner: -
  28788. --
  28789. CREATE VIEW operon_member AS
  28790. SELECT feature.feature_id AS operon_member_id,
  28791. feature.feature_id,
  28792. feature.dbxref_id,
  28793. feature.organism_id,
  28794. feature.name,
  28795. feature.uniquename,
  28796. feature.residues,
  28797. feature.seqlen,
  28798. feature.md5checksum,
  28799. feature.type_id,
  28800. feature.is_analysis,
  28801. feature.is_obsolete,
  28802. feature.timeaccessioned,
  28803. feature.timelastmodified
  28804. FROM (feature
  28805. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28806. WHERE ((cvterm.name)::text = 'operon_member'::text);
  28807. --
  28808. -- Name: orf; Type: VIEW; Schema: so; Owner: -
  28809. --
  28810. CREATE VIEW orf AS
  28811. SELECT feature.feature_id AS orf_id,
  28812. feature.feature_id,
  28813. feature.dbxref_id,
  28814. feature.organism_id,
  28815. feature.name,
  28816. feature.uniquename,
  28817. feature.residues,
  28818. feature.seqlen,
  28819. feature.md5checksum,
  28820. feature.type_id,
  28821. feature.is_analysis,
  28822. feature.is_obsolete,
  28823. feature.timeaccessioned,
  28824. feature.timelastmodified
  28825. FROM (feature
  28826. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28827. WHERE ((((cvterm.name)::text = 'mini_gene'::text) OR ((cvterm.name)::text = 'rescue_mini_gene'::text)) OR ((cvterm.name)::text = 'ORF'::text));
  28828. --
  28829. -- Name: organelle_sequence; Type: VIEW; Schema: so; Owner: -
  28830. --
  28831. CREATE VIEW organelle_sequence AS
  28832. SELECT feature.feature_id AS organelle_sequence_id,
  28833. feature.feature_id,
  28834. feature.dbxref_id,
  28835. feature.organism_id,
  28836. feature.name,
  28837. feature.uniquename,
  28838. feature.residues,
  28839. feature.seqlen,
  28840. feature.md5checksum,
  28841. feature.type_id,
  28842. feature.is_analysis,
  28843. feature.is_obsolete,
  28844. feature.timeaccessioned,
  28845. feature.timelastmodified
  28846. FROM (feature
  28847. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28848. WHERE ((((((((((((((((cvterm.name)::text = 'macronuclear_sequence'::text) OR ((cvterm.name)::text = 'micronuclear_sequence'::text)) OR ((cvterm.name)::text = 'mitochondrial_sequence'::text)) OR ((cvterm.name)::text = 'nuclear_sequence'::text)) OR ((cvterm.name)::text = 'nucleomorphic_sequence'::text)) OR ((cvterm.name)::text = 'plastid_sequence'::text)) OR ((cvterm.name)::text = 'mitochondrial_DNA'::text)) OR ((cvterm.name)::text = 'apicoplast_sequence'::text)) OR ((cvterm.name)::text = 'chromoplast_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_sequence'::text)) OR ((cvterm.name)::text = 'cyanelle_sequence'::text)) OR ((cvterm.name)::text = 'leucoplast_sequence'::text)) OR ((cvterm.name)::text = 'proplastid_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_DNA'::text)) OR ((cvterm.name)::text = 'organelle_sequence'::text));
  28849. --
  28850. -- Name: oric; Type: VIEW; Schema: so; Owner: -
  28851. --
  28852. CREATE VIEW oric AS
  28853. SELECT feature.feature_id AS oric_id,
  28854. feature.feature_id,
  28855. feature.dbxref_id,
  28856. feature.organism_id,
  28857. feature.name,
  28858. feature.uniquename,
  28859. feature.residues,
  28860. feature.seqlen,
  28861. feature.md5checksum,
  28862. feature.type_id,
  28863. feature.is_analysis,
  28864. feature.is_obsolete,
  28865. feature.timeaccessioned,
  28866. feature.timelastmodified
  28867. FROM (feature
  28868. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28869. WHERE ((cvterm.name)::text = 'oriC'::text);
  28870. --
  28871. -- Name: origin_of_replication; Type: VIEW; Schema: so; Owner: -
  28872. --
  28873. CREATE VIEW origin_of_replication AS
  28874. SELECT feature.feature_id AS origin_of_replication_id,
  28875. feature.feature_id,
  28876. feature.dbxref_id,
  28877. feature.organism_id,
  28878. feature.name,
  28879. feature.uniquename,
  28880. feature.residues,
  28881. feature.seqlen,
  28882. feature.md5checksum,
  28883. feature.type_id,
  28884. feature.is_analysis,
  28885. feature.is_obsolete,
  28886. feature.timeaccessioned,
  28887. feature.timelastmodified
  28888. FROM (feature
  28889. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28890. WHERE ((((((((cvterm.name)::text = 'D_loop'::text) OR ((cvterm.name)::text = 'ARS'::text)) OR ((cvterm.name)::text = 'oriT'::text)) OR ((cvterm.name)::text = 'amplification_origin'::text)) OR ((cvterm.name)::text = 'oriV'::text)) OR ((cvterm.name)::text = 'oriC'::text)) OR ((cvterm.name)::text = 'origin_of_replication'::text));
  28891. --
  28892. -- Name: orit; Type: VIEW; Schema: so; Owner: -
  28893. --
  28894. CREATE VIEW orit AS
  28895. SELECT feature.feature_id AS orit_id,
  28896. feature.feature_id,
  28897. feature.dbxref_id,
  28898. feature.organism_id,
  28899. feature.name,
  28900. feature.uniquename,
  28901. feature.residues,
  28902. feature.seqlen,
  28903. feature.md5checksum,
  28904. feature.type_id,
  28905. feature.is_analysis,
  28906. feature.is_obsolete,
  28907. feature.timeaccessioned,
  28908. feature.timelastmodified
  28909. FROM (feature
  28910. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28911. WHERE ((cvterm.name)::text = 'oriT'::text);
  28912. --
  28913. -- Name: oriv; Type: VIEW; Schema: so; Owner: -
  28914. --
  28915. CREATE VIEW oriv AS
  28916. SELECT feature.feature_id AS oriv_id,
  28917. feature.feature_id,
  28918. feature.dbxref_id,
  28919. feature.organism_id,
  28920. feature.name,
  28921. feature.uniquename,
  28922. feature.residues,
  28923. feature.seqlen,
  28924. feature.md5checksum,
  28925. feature.type_id,
  28926. feature.is_analysis,
  28927. feature.is_obsolete,
  28928. feature.timeaccessioned,
  28929. feature.timelastmodified
  28930. FROM (feature
  28931. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28932. WHERE ((cvterm.name)::text = 'oriV'::text);
  28933. --
  28934. -- Name: orphan; Type: VIEW; Schema: so; Owner: -
  28935. --
  28936. CREATE VIEW orphan AS
  28937. SELECT feature.feature_id AS orphan_id,
  28938. feature.feature_id,
  28939. feature.dbxref_id,
  28940. feature.organism_id,
  28941. feature.name,
  28942. feature.uniquename,
  28943. feature.residues,
  28944. feature.seqlen,
  28945. feature.md5checksum,
  28946. feature.type_id,
  28947. feature.is_analysis,
  28948. feature.is_obsolete,
  28949. feature.timeaccessioned,
  28950. feature.timelastmodified
  28951. FROM (feature
  28952. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28953. WHERE ((cvterm.name)::text = 'orphan'::text);
  28954. --
  28955. -- Name: orphan_cds; Type: VIEW; Schema: so; Owner: -
  28956. --
  28957. CREATE VIEW orphan_cds AS
  28958. SELECT feature.feature_id AS orphan_cds_id,
  28959. feature.feature_id,
  28960. feature.dbxref_id,
  28961. feature.organism_id,
  28962. feature.name,
  28963. feature.uniquename,
  28964. feature.residues,
  28965. feature.seqlen,
  28966. feature.md5checksum,
  28967. feature.type_id,
  28968. feature.is_analysis,
  28969. feature.is_obsolete,
  28970. feature.timeaccessioned,
  28971. feature.timelastmodified
  28972. FROM (feature
  28973. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28974. WHERE ((cvterm.name)::text = 'orphan_CDS'::text);
  28975. --
  28976. -- Name: orthologous; Type: VIEW; Schema: so; Owner: -
  28977. --
  28978. CREATE VIEW orthologous AS
  28979. SELECT feature.feature_id AS orthologous_id,
  28980. feature.feature_id,
  28981. feature.dbxref_id,
  28982. feature.organism_id,
  28983. feature.name,
  28984. feature.uniquename,
  28985. feature.residues,
  28986. feature.seqlen,
  28987. feature.md5checksum,
  28988. feature.type_id,
  28989. feature.is_analysis,
  28990. feature.is_obsolete,
  28991. feature.timeaccessioned,
  28992. feature.timelastmodified
  28993. FROM (feature
  28994. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  28995. WHERE ((cvterm.name)::text = 'orthologous'::text);
  28996. --
  28997. -- Name: orthologous_region; Type: VIEW; Schema: so; Owner: -
  28998. --
  28999. CREATE VIEW orthologous_region AS
  29000. SELECT feature.feature_id AS orthologous_region_id,
  29001. feature.feature_id,
  29002. feature.dbxref_id,
  29003. feature.organism_id,
  29004. feature.name,
  29005. feature.uniquename,
  29006. feature.residues,
  29007. feature.seqlen,
  29008. feature.md5checksum,
  29009. feature.type_id,
  29010. feature.is_analysis,
  29011. feature.is_obsolete,
  29012. feature.timeaccessioned,
  29013. feature.timelastmodified
  29014. FROM (feature
  29015. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29016. WHERE ((cvterm.name)::text = 'orthologous_region'::text);
  29017. --
  29018. -- Name: outron; Type: VIEW; Schema: so; Owner: -
  29019. --
  29020. CREATE VIEW outron AS
  29021. SELECT feature.feature_id AS outron_id,
  29022. feature.feature_id,
  29023. feature.dbxref_id,
  29024. feature.organism_id,
  29025. feature.name,
  29026. feature.uniquename,
  29027. feature.residues,
  29028. feature.seqlen,
  29029. feature.md5checksum,
  29030. feature.type_id,
  29031. feature.is_analysis,
  29032. feature.is_obsolete,
  29033. feature.timeaccessioned,
  29034. feature.timelastmodified
  29035. FROM (feature
  29036. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29037. WHERE ((cvterm.name)::text = 'outron'::text);
  29038. --
  29039. -- Name: overlapping; Type: VIEW; Schema: so; Owner: -
  29040. --
  29041. CREATE VIEW overlapping AS
  29042. SELECT feature.feature_id AS overlapping_id,
  29043. feature.feature_id,
  29044. feature.dbxref_id,
  29045. feature.organism_id,
  29046. feature.name,
  29047. feature.uniquename,
  29048. feature.residues,
  29049. feature.seqlen,
  29050. feature.md5checksum,
  29051. feature.type_id,
  29052. feature.is_analysis,
  29053. feature.is_obsolete,
  29054. feature.timeaccessioned,
  29055. feature.timelastmodified
  29056. FROM (feature
  29057. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29058. WHERE ((((((((((cvterm.name)::text = 'inside_intron'::text) OR ((cvterm.name)::text = 'five_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'five_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'antisense'::text)) OR ((cvterm.name)::text = 'inside_intron_antiparallel'::text)) OR ((cvterm.name)::text = 'inside_intron_parallel'::text)) OR ((cvterm.name)::text = 'overlapping'::text));
  29059. --
  29060. -- Name: overlapping_est_set; Type: VIEW; Schema: so; Owner: -
  29061. --
  29062. CREATE VIEW overlapping_est_set AS
  29063. SELECT feature.feature_id AS overlapping_est_set_id,
  29064. feature.feature_id,
  29065. feature.dbxref_id,
  29066. feature.organism_id,
  29067. feature.name,
  29068. feature.uniquename,
  29069. feature.residues,
  29070. feature.seqlen,
  29071. feature.md5checksum,
  29072. feature.type_id,
  29073. feature.is_analysis,
  29074. feature.is_obsolete,
  29075. feature.timeaccessioned,
  29076. feature.timelastmodified
  29077. FROM (feature
  29078. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29079. WHERE ((cvterm.name)::text = 'overlapping_EST_set'::text);
  29080. --
  29081. -- Name: overlapping_feature_set; Type: VIEW; Schema: so; Owner: -
  29082. --
  29083. CREATE VIEW overlapping_feature_set AS
  29084. SELECT feature.feature_id AS overlapping_feature_set_id,
  29085. feature.feature_id,
  29086. feature.dbxref_id,
  29087. feature.organism_id,
  29088. feature.name,
  29089. feature.uniquename,
  29090. feature.residues,
  29091. feature.seqlen,
  29092. feature.md5checksum,
  29093. feature.type_id,
  29094. feature.is_analysis,
  29095. feature.is_obsolete,
  29096. feature.timeaccessioned,
  29097. feature.timelastmodified
  29098. FROM (feature
  29099. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29100. WHERE (((cvterm.name)::text = 'overlapping_EST_set'::text) OR ((cvterm.name)::text = 'overlapping_feature_set'::text));
  29101. --
  29102. -- Name: oxys_rna; Type: VIEW; Schema: so; Owner: -
  29103. --
  29104. CREATE VIEW oxys_rna AS
  29105. SELECT feature.feature_id AS oxys_rna_id,
  29106. feature.feature_id,
  29107. feature.dbxref_id,
  29108. feature.organism_id,
  29109. feature.name,
  29110. feature.uniquename,
  29111. feature.residues,
  29112. feature.seqlen,
  29113. feature.md5checksum,
  29114. feature.type_id,
  29115. feature.is_analysis,
  29116. feature.is_obsolete,
  29117. feature.timeaccessioned,
  29118. feature.timelastmodified
  29119. FROM (feature
  29120. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29121. WHERE ((cvterm.name)::text = 'OxyS_RNA'::text);
  29122. --
  29123. -- Name: p_element; Type: VIEW; Schema: so; Owner: -
  29124. --
  29125. CREATE VIEW p_element AS
  29126. SELECT feature.feature_id AS p_element_id,
  29127. feature.feature_id,
  29128. feature.dbxref_id,
  29129. feature.organism_id,
  29130. feature.name,
  29131. feature.uniquename,
  29132. feature.residues,
  29133. feature.seqlen,
  29134. feature.md5checksum,
  29135. feature.type_id,
  29136. feature.is_analysis,
  29137. feature.is_obsolete,
  29138. feature.timeaccessioned,
  29139. feature.timelastmodified
  29140. FROM (feature
  29141. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29142. WHERE ((cvterm.name)::text = 'p_element'::text);
  29143. --
  29144. -- Name: pac; Type: VIEW; Schema: so; Owner: -
  29145. --
  29146. CREATE VIEW pac AS
  29147. SELECT feature.feature_id AS pac_id,
  29148. feature.feature_id,
  29149. feature.dbxref_id,
  29150. feature.organism_id,
  29151. feature.name,
  29152. feature.uniquename,
  29153. feature.residues,
  29154. feature.seqlen,
  29155. feature.md5checksum,
  29156. feature.type_id,
  29157. feature.is_analysis,
  29158. feature.is_obsolete,
  29159. feature.timeaccessioned,
  29160. feature.timelastmodified
  29161. FROM (feature
  29162. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29163. WHERE ((cvterm.name)::text = 'PAC'::text);
  29164. --
  29165. -- Name: pac_end; Type: VIEW; Schema: so; Owner: -
  29166. --
  29167. CREATE VIEW pac_end AS
  29168. SELECT feature.feature_id AS pac_end_id,
  29169. feature.feature_id,
  29170. feature.dbxref_id,
  29171. feature.organism_id,
  29172. feature.name,
  29173. feature.uniquename,
  29174. feature.residues,
  29175. feature.seqlen,
  29176. feature.md5checksum,
  29177. feature.type_id,
  29178. feature.is_analysis,
  29179. feature.is_obsolete,
  29180. feature.timeaccessioned,
  29181. feature.timelastmodified
  29182. FROM (feature
  29183. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29184. WHERE ((cvterm.name)::text = 'PAC_end'::text);
  29185. --
  29186. -- Name: paired_end_fragment; Type: VIEW; Schema: so; Owner: -
  29187. --
  29188. CREATE VIEW paired_end_fragment AS
  29189. SELECT feature.feature_id AS paired_end_fragment_id,
  29190. feature.feature_id,
  29191. feature.dbxref_id,
  29192. feature.organism_id,
  29193. feature.name,
  29194. feature.uniquename,
  29195. feature.residues,
  29196. feature.seqlen,
  29197. feature.md5checksum,
  29198. feature.type_id,
  29199. feature.is_analysis,
  29200. feature.is_obsolete,
  29201. feature.timeaccessioned,
  29202. feature.timelastmodified
  29203. FROM (feature
  29204. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29205. WHERE ((cvterm.name)::text = 'paired_end_fragment'::text);
  29206. --
  29207. -- Name: paracentric; Type: VIEW; Schema: so; Owner: -
  29208. --
  29209. CREATE VIEW paracentric AS
  29210. SELECT feature.feature_id AS paracentric_id,
  29211. feature.feature_id,
  29212. feature.dbxref_id,
  29213. feature.organism_id,
  29214. feature.name,
  29215. feature.uniquename,
  29216. feature.residues,
  29217. feature.seqlen,
  29218. feature.md5checksum,
  29219. feature.type_id,
  29220. feature.is_analysis,
  29221. feature.is_obsolete,
  29222. feature.timeaccessioned,
  29223. feature.timelastmodified
  29224. FROM (feature
  29225. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29226. WHERE ((cvterm.name)::text = 'paracentric'::text);
  29227. --
  29228. -- Name: paracentric_inversion; Type: VIEW; Schema: so; Owner: -
  29229. --
  29230. CREATE VIEW paracentric_inversion AS
  29231. SELECT feature.feature_id AS paracentric_inversion_id,
  29232. feature.feature_id,
  29233. feature.dbxref_id,
  29234. feature.organism_id,
  29235. feature.name,
  29236. feature.uniquename,
  29237. feature.residues,
  29238. feature.seqlen,
  29239. feature.md5checksum,
  29240. feature.type_id,
  29241. feature.is_analysis,
  29242. feature.is_obsolete,
  29243. feature.timeaccessioned,
  29244. feature.timelastmodified
  29245. FROM (feature
  29246. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29247. WHERE ((cvterm.name)::text = 'paracentric_inversion'::text);
  29248. --
  29249. -- Name: parallel_beta_strand; Type: VIEW; Schema: so; Owner: -
  29250. --
  29251. CREATE VIEW parallel_beta_strand AS
  29252. SELECT feature.feature_id AS parallel_beta_strand_id,
  29253. feature.feature_id,
  29254. feature.dbxref_id,
  29255. feature.organism_id,
  29256. feature.name,
  29257. feature.uniquename,
  29258. feature.residues,
  29259. feature.seqlen,
  29260. feature.md5checksum,
  29261. feature.type_id,
  29262. feature.is_analysis,
  29263. feature.is_obsolete,
  29264. feature.timeaccessioned,
  29265. feature.timelastmodified
  29266. FROM (feature
  29267. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29268. WHERE ((cvterm.name)::text = 'parallel_beta_strand'::text);
  29269. --
  29270. -- Name: paralogous; Type: VIEW; Schema: so; Owner: -
  29271. --
  29272. CREATE VIEW paralogous AS
  29273. SELECT feature.feature_id AS paralogous_id,
  29274. feature.feature_id,
  29275. feature.dbxref_id,
  29276. feature.organism_id,
  29277. feature.name,
  29278. feature.uniquename,
  29279. feature.residues,
  29280. feature.seqlen,
  29281. feature.md5checksum,
  29282. feature.type_id,
  29283. feature.is_analysis,
  29284. feature.is_obsolete,
  29285. feature.timeaccessioned,
  29286. feature.timelastmodified
  29287. FROM (feature
  29288. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29289. WHERE ((cvterm.name)::text = 'paralogous'::text);
  29290. --
  29291. -- Name: paralogous_region; Type: VIEW; Schema: so; Owner: -
  29292. --
  29293. CREATE VIEW paralogous_region AS
  29294. SELECT feature.feature_id AS paralogous_region_id,
  29295. feature.feature_id,
  29296. feature.dbxref_id,
  29297. feature.organism_id,
  29298. feature.name,
  29299. feature.uniquename,
  29300. feature.residues,
  29301. feature.seqlen,
  29302. feature.md5checksum,
  29303. feature.type_id,
  29304. feature.is_analysis,
  29305. feature.is_obsolete,
  29306. feature.timeaccessioned,
  29307. feature.timelastmodified
  29308. FROM (feature
  29309. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29310. WHERE ((cvterm.name)::text = 'paralogous_region'::text);
  29311. --
  29312. -- Name: partially_characterised_chromosomal_mutation; Type: VIEW; Schema: so; Owner: -
  29313. --
  29314. CREATE VIEW partially_characterised_chromosomal_mutation AS
  29315. SELECT feature.feature_id AS partially_characterised_chromosomal_mutation_id,
  29316. feature.feature_id,
  29317. feature.dbxref_id,
  29318. feature.organism_id,
  29319. feature.name,
  29320. feature.uniquename,
  29321. feature.residues,
  29322. feature.seqlen,
  29323. feature.md5checksum,
  29324. feature.type_id,
  29325. feature.is_analysis,
  29326. feature.is_obsolete,
  29327. feature.timeaccessioned,
  29328. feature.timelastmodified
  29329. FROM (feature
  29330. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29331. WHERE ((cvterm.name)::text = 'partially_characterised_chromosomal_mutation'::text);
  29332. --
  29333. -- Name: partially_processed_cdna_clone; Type: VIEW; Schema: so; Owner: -
  29334. --
  29335. CREATE VIEW partially_processed_cdna_clone AS
  29336. SELECT feature.feature_id AS partially_processed_cdna_clone_id,
  29337. feature.feature_id,
  29338. feature.dbxref_id,
  29339. feature.organism_id,
  29340. feature.name,
  29341. feature.uniquename,
  29342. feature.residues,
  29343. feature.seqlen,
  29344. feature.md5checksum,
  29345. feature.type_id,
  29346. feature.is_analysis,
  29347. feature.is_obsolete,
  29348. feature.timeaccessioned,
  29349. feature.timelastmodified
  29350. FROM (feature
  29351. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29352. WHERE ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text);
  29353. --
  29354. -- Name: paternal_uniparental_disomy; Type: VIEW; Schema: so; Owner: -
  29355. --
  29356. CREATE VIEW paternal_uniparental_disomy AS
  29357. SELECT feature.feature_id AS paternal_uniparental_disomy_id,
  29358. feature.feature_id,
  29359. feature.dbxref_id,
  29360. feature.organism_id,
  29361. feature.name,
  29362. feature.uniquename,
  29363. feature.residues,
  29364. feature.seqlen,
  29365. feature.md5checksum,
  29366. feature.type_id,
  29367. feature.is_analysis,
  29368. feature.is_obsolete,
  29369. feature.timeaccessioned,
  29370. feature.timelastmodified
  29371. FROM (feature
  29372. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29373. WHERE ((cvterm.name)::text = 'paternal_uniparental_disomy'::text);
  29374. --
  29375. -- Name: paternal_variant; Type: VIEW; Schema: so; Owner: -
  29376. --
  29377. CREATE VIEW paternal_variant AS
  29378. SELECT feature.feature_id AS paternal_variant_id,
  29379. feature.feature_id,
  29380. feature.dbxref_id,
  29381. feature.organism_id,
  29382. feature.name,
  29383. feature.uniquename,
  29384. feature.residues,
  29385. feature.seqlen,
  29386. feature.md5checksum,
  29387. feature.type_id,
  29388. feature.is_analysis,
  29389. feature.is_obsolete,
  29390. feature.timeaccessioned,
  29391. feature.timelastmodified
  29392. FROM (feature
  29393. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29394. WHERE ((cvterm.name)::text = 'paternal_variant'::text);
  29395. --
  29396. -- Name: paternally_imprinted; Type: VIEW; Schema: so; Owner: -
  29397. --
  29398. CREATE VIEW paternally_imprinted AS
  29399. SELECT feature.feature_id AS paternally_imprinted_id,
  29400. feature.feature_id,
  29401. feature.dbxref_id,
  29402. feature.organism_id,
  29403. feature.name,
  29404. feature.uniquename,
  29405. feature.residues,
  29406. feature.seqlen,
  29407. feature.md5checksum,
  29408. feature.type_id,
  29409. feature.is_analysis,
  29410. feature.is_obsolete,
  29411. feature.timeaccessioned,
  29412. feature.timelastmodified
  29413. FROM (feature
  29414. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29415. WHERE ((cvterm.name)::text = 'paternally_imprinted'::text);
  29416. --
  29417. -- Name: paternally_imprinted_gene; Type: VIEW; Schema: so; Owner: -
  29418. --
  29419. CREATE VIEW paternally_imprinted_gene AS
  29420. SELECT feature.feature_id AS paternally_imprinted_gene_id,
  29421. feature.feature_id,
  29422. feature.dbxref_id,
  29423. feature.organism_id,
  29424. feature.name,
  29425. feature.uniquename,
  29426. feature.residues,
  29427. feature.seqlen,
  29428. feature.md5checksum,
  29429. feature.type_id,
  29430. feature.is_analysis,
  29431. feature.is_obsolete,
  29432. feature.timeaccessioned,
  29433. feature.timelastmodified
  29434. FROM (feature
  29435. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29436. WHERE ((cvterm.name)::text = 'paternally_imprinted_gene'::text);
  29437. --
  29438. -- Name: pathogenic_island; Type: VIEW; Schema: so; Owner: -
  29439. --
  29440. CREATE VIEW pathogenic_island AS
  29441. SELECT feature.feature_id AS pathogenic_island_id,
  29442. feature.feature_id,
  29443. feature.dbxref_id,
  29444. feature.organism_id,
  29445. feature.name,
  29446. feature.uniquename,
  29447. feature.residues,
  29448. feature.seqlen,
  29449. feature.md5checksum,
  29450. feature.type_id,
  29451. feature.is_analysis,
  29452. feature.is_obsolete,
  29453. feature.timeaccessioned,
  29454. feature.timelastmodified
  29455. FROM (feature
  29456. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29457. WHERE ((cvterm.name)::text = 'pathogenic_island'::text);
  29458. --
  29459. -- Name: pcr_product; Type: VIEW; Schema: so; Owner: -
  29460. --
  29461. CREATE VIEW pcr_product AS
  29462. SELECT feature.feature_id AS pcr_product_id,
  29463. feature.feature_id,
  29464. feature.dbxref_id,
  29465. feature.organism_id,
  29466. feature.name,
  29467. feature.uniquename,
  29468. feature.residues,
  29469. feature.seqlen,
  29470. feature.md5checksum,
  29471. feature.type_id,
  29472. feature.is_analysis,
  29473. feature.is_obsolete,
  29474. feature.timeaccessioned,
  29475. feature.timelastmodified
  29476. FROM (feature
  29477. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29478. WHERE (((cvterm.name)::text = 'RAPD'::text) OR ((cvterm.name)::text = 'PCR_product'::text));
  29479. --
  29480. -- Name: pedigree_specific_variant; Type: VIEW; Schema: so; Owner: -
  29481. --
  29482. CREATE VIEW pedigree_specific_variant AS
  29483. SELECT feature.feature_id AS pedigree_specific_variant_id,
  29484. feature.feature_id,
  29485. feature.dbxref_id,
  29486. feature.organism_id,
  29487. feature.name,
  29488. feature.uniquename,
  29489. feature.residues,
  29490. feature.seqlen,
  29491. feature.md5checksum,
  29492. feature.type_id,
  29493. feature.is_analysis,
  29494. feature.is_obsolete,
  29495. feature.timeaccessioned,
  29496. feature.timelastmodified
  29497. FROM (feature
  29498. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29499. WHERE ((cvterm.name)::text = 'pedigree_specific_variant'::text);
  29500. --
  29501. -- Name: peptide_coil; Type: VIEW; Schema: so; Owner: -
  29502. --
  29503. CREATE VIEW peptide_coil AS
  29504. SELECT feature.feature_id AS peptide_coil_id,
  29505. feature.feature_id,
  29506. feature.dbxref_id,
  29507. feature.organism_id,
  29508. feature.name,
  29509. feature.uniquename,
  29510. feature.residues,
  29511. feature.seqlen,
  29512. feature.md5checksum,
  29513. feature.type_id,
  29514. feature.is_analysis,
  29515. feature.is_obsolete,
  29516. feature.timeaccessioned,
  29517. feature.timelastmodified
  29518. FROM (feature
  29519. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29520. WHERE ((cvterm.name)::text = 'peptide_coil'::text);
  29521. --
  29522. -- Name: peptide_collection; Type: VIEW; Schema: so; Owner: -
  29523. --
  29524. CREATE VIEW peptide_collection AS
  29525. SELECT feature.feature_id AS peptide_collection_id,
  29526. feature.feature_id,
  29527. feature.dbxref_id,
  29528. feature.organism_id,
  29529. feature.name,
  29530. feature.uniquename,
  29531. feature.residues,
  29532. feature.seqlen,
  29533. feature.md5checksum,
  29534. feature.type_id,
  29535. feature.is_analysis,
  29536. feature.is_obsolete,
  29537. feature.timeaccessioned,
  29538. feature.timelastmodified
  29539. FROM (feature
  29540. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29541. WHERE ((cvterm.name)::text = 'peptide_collection'::text);
  29542. --
  29543. -- Name: peptide_helix; Type: VIEW; Schema: so; Owner: -
  29544. --
  29545. CREATE VIEW peptide_helix AS
  29546. SELECT feature.feature_id AS peptide_helix_id,
  29547. feature.feature_id,
  29548. feature.dbxref_id,
  29549. feature.organism_id,
  29550. feature.name,
  29551. feature.uniquename,
  29552. feature.residues,
  29553. feature.seqlen,
  29554. feature.md5checksum,
  29555. feature.type_id,
  29556. feature.is_analysis,
  29557. feature.is_obsolete,
  29558. feature.timeaccessioned,
  29559. feature.timelastmodified
  29560. FROM (feature
  29561. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29562. WHERE (((((((cvterm.name)::text = 'left_handed_peptide_helix'::text) OR ((cvterm.name)::text = 'right_handed_peptide_helix'::text)) OR ((cvterm.name)::text = 'alpha_helix'::text)) OR ((cvterm.name)::text = 'pi_helix'::text)) OR ((cvterm.name)::text = 'three_ten_helix'::text)) OR ((cvterm.name)::text = 'peptide_helix'::text));
  29563. --
  29564. -- Name: peptide_localization_signal; Type: VIEW; Schema: so; Owner: -
  29565. --
  29566. CREATE VIEW peptide_localization_signal AS
  29567. SELECT feature.feature_id AS peptide_localization_signal_id,
  29568. feature.feature_id,
  29569. feature.dbxref_id,
  29570. feature.organism_id,
  29571. feature.name,
  29572. feature.uniquename,
  29573. feature.residues,
  29574. feature.seqlen,
  29575. feature.md5checksum,
  29576. feature.type_id,
  29577. feature.is_analysis,
  29578. feature.is_obsolete,
  29579. feature.timeaccessioned,
  29580. feature.timelastmodified
  29581. FROM (feature
  29582. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29583. WHERE (((((((((cvterm.name)::text = 'signal_peptide'::text) OR ((cvterm.name)::text = 'transit_peptide'::text)) OR ((cvterm.name)::text = 'nuclear_localization_signal'::text)) OR ((cvterm.name)::text = 'endosomal_localization_signal'::text)) OR ((cvterm.name)::text = 'lysosomal_localization_signal'::text)) OR ((cvterm.name)::text = 'nuclear_export_signal'::text)) OR ((cvterm.name)::text = 'nuclear_rim_localization_signal'::text)) OR ((cvterm.name)::text = 'peptide_localization_signal'::text));
  29584. --
  29585. -- Name: peptidyl; Type: VIEW; Schema: so; Owner: -
  29586. --
  29587. CREATE VIEW peptidyl AS
  29588. SELECT feature.feature_id AS peptidyl_id,
  29589. feature.feature_id,
  29590. feature.dbxref_id,
  29591. feature.organism_id,
  29592. feature.name,
  29593. feature.uniquename,
  29594. feature.residues,
  29595. feature.seqlen,
  29596. feature.md5checksum,
  29597. feature.type_id,
  29598. feature.is_analysis,
  29599. feature.is_obsolete,
  29600. feature.timeaccessioned,
  29601. feature.timelastmodified
  29602. FROM (feature
  29603. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29604. WHERE ((cvterm.name)::text = 'peptidyl'::text);
  29605. --
  29606. -- Name: pericentric; Type: VIEW; Schema: so; Owner: -
  29607. --
  29608. CREATE VIEW pericentric AS
  29609. SELECT feature.feature_id AS pericentric_id,
  29610. feature.feature_id,
  29611. feature.dbxref_id,
  29612. feature.organism_id,
  29613. feature.name,
  29614. feature.uniquename,
  29615. feature.residues,
  29616. feature.seqlen,
  29617. feature.md5checksum,
  29618. feature.type_id,
  29619. feature.is_analysis,
  29620. feature.is_obsolete,
  29621. feature.timeaccessioned,
  29622. feature.timelastmodified
  29623. FROM (feature
  29624. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29625. WHERE ((cvterm.name)::text = 'pericentric'::text);
  29626. --
  29627. -- Name: pericentric_inversion; Type: VIEW; Schema: so; Owner: -
  29628. --
  29629. CREATE VIEW pericentric_inversion AS
  29630. SELECT feature.feature_id AS pericentric_inversion_id,
  29631. feature.feature_id,
  29632. feature.dbxref_id,
  29633. feature.organism_id,
  29634. feature.name,
  29635. feature.uniquename,
  29636. feature.residues,
  29637. feature.seqlen,
  29638. feature.md5checksum,
  29639. feature.type_id,
  29640. feature.is_analysis,
  29641. feature.is_obsolete,
  29642. feature.timeaccessioned,
  29643. feature.timelastmodified
  29644. FROM (feature
  29645. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29646. WHERE ((cvterm.name)::text = 'pericentric_inversion'::text);
  29647. --
  29648. -- Name: peroxywybutosine; Type: VIEW; Schema: so; Owner: -
  29649. --
  29650. CREATE VIEW peroxywybutosine AS
  29651. SELECT feature.feature_id AS peroxywybutosine_id,
  29652. feature.feature_id,
  29653. feature.dbxref_id,
  29654. feature.organism_id,
  29655. feature.name,
  29656. feature.uniquename,
  29657. feature.residues,
  29658. feature.seqlen,
  29659. feature.md5checksum,
  29660. feature.type_id,
  29661. feature.is_analysis,
  29662. feature.is_obsolete,
  29663. feature.timeaccessioned,
  29664. feature.timelastmodified
  29665. FROM (feature
  29666. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29667. WHERE ((cvterm.name)::text = 'peroxywybutosine'::text);
  29668. --
  29669. -- Name: phage_rna_polymerase_promoter; Type: VIEW; Schema: so; Owner: -
  29670. --
  29671. CREATE VIEW phage_rna_polymerase_promoter AS
  29672. SELECT feature.feature_id AS phage_rna_polymerase_promoter_id,
  29673. feature.feature_id,
  29674. feature.dbxref_id,
  29675. feature.organism_id,
  29676. feature.name,
  29677. feature.uniquename,
  29678. feature.residues,
  29679. feature.seqlen,
  29680. feature.md5checksum,
  29681. feature.type_id,
  29682. feature.is_analysis,
  29683. feature.is_obsolete,
  29684. feature.timeaccessioned,
  29685. feature.timelastmodified
  29686. FROM (feature
  29687. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29688. WHERE (((((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text) OR ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'Phage_RNA_Polymerase_Promoter'::text));
  29689. --
  29690. -- Name: phage_sequence; Type: VIEW; Schema: so; Owner: -
  29691. --
  29692. CREATE VIEW phage_sequence AS
  29693. SELECT feature.feature_id AS phage_sequence_id,
  29694. feature.feature_id,
  29695. feature.dbxref_id,
  29696. feature.organism_id,
  29697. feature.name,
  29698. feature.uniquename,
  29699. feature.residues,
  29700. feature.seqlen,
  29701. feature.md5checksum,
  29702. feature.type_id,
  29703. feature.is_analysis,
  29704. feature.is_obsolete,
  29705. feature.timeaccessioned,
  29706. feature.timelastmodified
  29707. FROM (feature
  29708. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29709. WHERE ((cvterm.name)::text = 'phage_sequence'::text);
  29710. --
  29711. -- Name: phagemid; Type: VIEW; Schema: so; Owner: -
  29712. --
  29713. CREATE VIEW phagemid AS
  29714. SELECT feature.feature_id AS phagemid_id,
  29715. feature.feature_id,
  29716. feature.dbxref_id,
  29717. feature.organism_id,
  29718. feature.name,
  29719. feature.uniquename,
  29720. feature.residues,
  29721. feature.seqlen,
  29722. feature.md5checksum,
  29723. feature.type_id,
  29724. feature.is_analysis,
  29725. feature.is_obsolete,
  29726. feature.timeaccessioned,
  29727. feature.timelastmodified
  29728. FROM (feature
  29729. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29730. WHERE ((cvterm.name)::text = 'phagemid'::text);
  29731. --
  29732. -- Name: phe_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  29733. --
  29734. CREATE VIEW phe_trna_primary_transcript AS
  29735. SELECT feature.feature_id AS phe_trna_primary_transcript_id,
  29736. feature.feature_id,
  29737. feature.dbxref_id,
  29738. feature.organism_id,
  29739. feature.name,
  29740. feature.uniquename,
  29741. feature.residues,
  29742. feature.seqlen,
  29743. feature.md5checksum,
  29744. feature.type_id,
  29745. feature.is_analysis,
  29746. feature.is_obsolete,
  29747. feature.timeaccessioned,
  29748. feature.timelastmodified
  29749. FROM (feature
  29750. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29751. WHERE ((cvterm.name)::text = 'phenylalanine_tRNA_primary_transcript'::text);
  29752. --
  29753. -- Name: phenylalanine; Type: VIEW; Schema: so; Owner: -
  29754. --
  29755. CREATE VIEW phenylalanine AS
  29756. SELECT feature.feature_id AS phenylalanine_id,
  29757. feature.feature_id,
  29758. feature.dbxref_id,
  29759. feature.organism_id,
  29760. feature.name,
  29761. feature.uniquename,
  29762. feature.residues,
  29763. feature.seqlen,
  29764. feature.md5checksum,
  29765. feature.type_id,
  29766. feature.is_analysis,
  29767. feature.is_obsolete,
  29768. feature.timeaccessioned,
  29769. feature.timelastmodified
  29770. FROM (feature
  29771. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29772. WHERE ((cvterm.name)::text = 'phenylalanine'::text);
  29773. --
  29774. -- Name: phenylalanyl_trna; Type: VIEW; Schema: so; Owner: -
  29775. --
  29776. CREATE VIEW phenylalanyl_trna AS
  29777. SELECT feature.feature_id AS phenylalanyl_trna_id,
  29778. feature.feature_id,
  29779. feature.dbxref_id,
  29780. feature.organism_id,
  29781. feature.name,
  29782. feature.uniquename,
  29783. feature.residues,
  29784. feature.seqlen,
  29785. feature.md5checksum,
  29786. feature.type_id,
  29787. feature.is_analysis,
  29788. feature.is_obsolete,
  29789. feature.timeaccessioned,
  29790. feature.timelastmodified
  29791. FROM (feature
  29792. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29793. WHERE ((cvterm.name)::text = 'phenylalanyl_tRNA'::text);
  29794. --
  29795. -- Name: pi_helix; Type: VIEW; Schema: so; Owner: -
  29796. --
  29797. CREATE VIEW pi_helix AS
  29798. SELECT feature.feature_id AS pi_helix_id,
  29799. feature.feature_id,
  29800. feature.dbxref_id,
  29801. feature.organism_id,
  29802. feature.name,
  29803. feature.uniquename,
  29804. feature.residues,
  29805. feature.seqlen,
  29806. feature.md5checksum,
  29807. feature.type_id,
  29808. feature.is_analysis,
  29809. feature.is_obsolete,
  29810. feature.timeaccessioned,
  29811. feature.timelastmodified
  29812. FROM (feature
  29813. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29814. WHERE ((cvterm.name)::text = 'pi_helix'::text);
  29815. --
  29816. -- Name: pirna; Type: VIEW; Schema: so; Owner: -
  29817. --
  29818. CREATE VIEW pirna AS
  29819. SELECT feature.feature_id AS pirna_id,
  29820. feature.feature_id,
  29821. feature.dbxref_id,
  29822. feature.organism_id,
  29823. feature.name,
  29824. feature.uniquename,
  29825. feature.residues,
  29826. feature.seqlen,
  29827. feature.md5checksum,
  29828. feature.type_id,
  29829. feature.is_analysis,
  29830. feature.is_obsolete,
  29831. feature.timeaccessioned,
  29832. feature.timelastmodified
  29833. FROM (feature
  29834. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29835. WHERE ((cvterm.name)::text = 'piRNA'::text);
  29836. --
  29837. -- Name: pirna_gene; Type: VIEW; Schema: so; Owner: -
  29838. --
  29839. CREATE VIEW pirna_gene AS
  29840. SELECT feature.feature_id AS pirna_gene_id,
  29841. feature.feature_id,
  29842. feature.dbxref_id,
  29843. feature.organism_id,
  29844. feature.name,
  29845. feature.uniquename,
  29846. feature.residues,
  29847. feature.seqlen,
  29848. feature.md5checksum,
  29849. feature.type_id,
  29850. feature.is_analysis,
  29851. feature.is_obsolete,
  29852. feature.timeaccessioned,
  29853. feature.timelastmodified
  29854. FROM (feature
  29855. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29856. WHERE ((cvterm.name)::text = 'piRNA_gene'::text);
  29857. --
  29858. -- Name: plasmid; Type: VIEW; Schema: so; Owner: -
  29859. --
  29860. CREATE VIEW plasmid AS
  29861. SELECT feature.feature_id AS plasmid_id,
  29862. feature.feature_id,
  29863. feature.dbxref_id,
  29864. feature.organism_id,
  29865. feature.name,
  29866. feature.uniquename,
  29867. feature.residues,
  29868. feature.seqlen,
  29869. feature.md5checksum,
  29870. feature.type_id,
  29871. feature.is_analysis,
  29872. feature.is_obsolete,
  29873. feature.timeaccessioned,
  29874. feature.timelastmodified
  29875. FROM (feature
  29876. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29877. WHERE ((((((((((cvterm.name)::text = 'engineered_plasmid'::text) OR ((cvterm.name)::text = 'episome'::text)) OR ((cvterm.name)::text = 'natural_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'plasmid'::text));
  29878. --
  29879. -- Name: plasmid_gene; Type: VIEW; Schema: so; Owner: -
  29880. --
  29881. CREATE VIEW plasmid_gene AS
  29882. SELECT feature.feature_id AS plasmid_gene_id,
  29883. feature.feature_id,
  29884. feature.dbxref_id,
  29885. feature.organism_id,
  29886. feature.name,
  29887. feature.uniquename,
  29888. feature.residues,
  29889. feature.seqlen,
  29890. feature.md5checksum,
  29891. feature.type_id,
  29892. feature.is_analysis,
  29893. feature.is_obsolete,
  29894. feature.timeaccessioned,
  29895. feature.timelastmodified
  29896. FROM (feature
  29897. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29898. WHERE ((cvterm.name)::text = 'plasmid_gene'::text);
  29899. --
  29900. -- Name: plasmid_location; Type: VIEW; Schema: so; Owner: -
  29901. --
  29902. CREATE VIEW plasmid_location AS
  29903. SELECT feature.feature_id AS plasmid_location_id,
  29904. feature.feature_id,
  29905. feature.dbxref_id,
  29906. feature.organism_id,
  29907. feature.name,
  29908. feature.uniquename,
  29909. feature.residues,
  29910. feature.seqlen,
  29911. feature.md5checksum,
  29912. feature.type_id,
  29913. feature.is_analysis,
  29914. feature.is_obsolete,
  29915. feature.timeaccessioned,
  29916. feature.timelastmodified
  29917. FROM (feature
  29918. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29919. WHERE ((cvterm.name)::text = 'plasmid_location'::text);
  29920. --
  29921. -- Name: plasmid_vector; Type: VIEW; Schema: so; Owner: -
  29922. --
  29923. CREATE VIEW plasmid_vector AS
  29924. SELECT feature.feature_id AS plasmid_vector_id,
  29925. feature.feature_id,
  29926. feature.dbxref_id,
  29927. feature.organism_id,
  29928. feature.name,
  29929. feature.uniquename,
  29930. feature.residues,
  29931. feature.seqlen,
  29932. feature.md5checksum,
  29933. feature.type_id,
  29934. feature.is_analysis,
  29935. feature.is_obsolete,
  29936. feature.timeaccessioned,
  29937. feature.timelastmodified
  29938. FROM (feature
  29939. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29940. WHERE ((cvterm.name)::text = 'plasmid_vector'::text);
  29941. --
  29942. -- Name: plastid_gene; Type: VIEW; Schema: so; Owner: -
  29943. --
  29944. CREATE VIEW plastid_gene AS
  29945. SELECT feature.feature_id AS plastid_gene_id,
  29946. feature.feature_id,
  29947. feature.dbxref_id,
  29948. feature.organism_id,
  29949. feature.name,
  29950. feature.uniquename,
  29951. feature.residues,
  29952. feature.seqlen,
  29953. feature.md5checksum,
  29954. feature.type_id,
  29955. feature.is_analysis,
  29956. feature.is_obsolete,
  29957. feature.timeaccessioned,
  29958. feature.timelastmodified
  29959. FROM (feature
  29960. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29961. WHERE ((((((((cvterm.name)::text = 'apicoplast_gene'::text) OR ((cvterm.name)::text = 'ct_gene'::text)) OR ((cvterm.name)::text = 'chromoplast_gene'::text)) OR ((cvterm.name)::text = 'cyanelle_gene'::text)) OR ((cvterm.name)::text = 'leucoplast_gene'::text)) OR ((cvterm.name)::text = 'proplastid_gene'::text)) OR ((cvterm.name)::text = 'plastid_gene'::text));
  29962. --
  29963. -- Name: plastid_sequence; Type: VIEW; Schema: so; Owner: -
  29964. --
  29965. CREATE VIEW plastid_sequence AS
  29966. SELECT feature.feature_id AS plastid_sequence_id,
  29967. feature.feature_id,
  29968. feature.dbxref_id,
  29969. feature.organism_id,
  29970. feature.name,
  29971. feature.uniquename,
  29972. feature.residues,
  29973. feature.seqlen,
  29974. feature.md5checksum,
  29975. feature.type_id,
  29976. feature.is_analysis,
  29977. feature.is_obsolete,
  29978. feature.timeaccessioned,
  29979. feature.timelastmodified
  29980. FROM (feature
  29981. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  29982. WHERE (((((((((cvterm.name)::text = 'apicoplast_sequence'::text) OR ((cvterm.name)::text = 'chromoplast_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_sequence'::text)) OR ((cvterm.name)::text = 'cyanelle_sequence'::text)) OR ((cvterm.name)::text = 'leucoplast_sequence'::text)) OR ((cvterm.name)::text = 'proplastid_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_DNA'::text)) OR ((cvterm.name)::text = 'plastid_sequence'::text));
  29983. --
  29984. -- Name: plus_1_frameshift; Type: VIEW; Schema: so; Owner: -
  29985. --
  29986. CREATE VIEW plus_1_frameshift AS
  29987. SELECT feature.feature_id AS plus_1_frameshift_id,
  29988. feature.feature_id,
  29989. feature.dbxref_id,
  29990. feature.organism_id,
  29991. feature.name,
  29992. feature.uniquename,
  29993. feature.residues,
  29994. feature.seqlen,
  29995. feature.md5checksum,
  29996. feature.type_id,
  29997. feature.is_analysis,
  29998. feature.is_obsolete,
  29999. feature.timeaccessioned,
  30000. feature.timelastmodified
  30001. FROM (feature
  30002. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30003. WHERE ((cvterm.name)::text = 'plus_1_frameshift'::text);
  30004. --
  30005. -- Name: plus_1_frameshift_variant; Type: VIEW; Schema: so; Owner: -
  30006. --
  30007. CREATE VIEW plus_1_frameshift_variant AS
  30008. SELECT feature.feature_id AS plus_1_frameshift_variant_id,
  30009. feature.feature_id,
  30010. feature.dbxref_id,
  30011. feature.organism_id,
  30012. feature.name,
  30013. feature.uniquename,
  30014. feature.residues,
  30015. feature.seqlen,
  30016. feature.md5checksum,
  30017. feature.type_id,
  30018. feature.is_analysis,
  30019. feature.is_obsolete,
  30020. feature.timeaccessioned,
  30021. feature.timelastmodified
  30022. FROM (feature
  30023. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30024. WHERE ((cvterm.name)::text = 'plus_1_frameshift_variant'::text);
  30025. --
  30026. -- Name: plus_1_translational_frameshift; Type: VIEW; Schema: so; Owner: -
  30027. --
  30028. CREATE VIEW plus_1_translational_frameshift AS
  30029. SELECT feature.feature_id AS plus_1_translational_frameshift_id,
  30030. feature.feature_id,
  30031. feature.dbxref_id,
  30032. feature.organism_id,
  30033. feature.name,
  30034. feature.uniquename,
  30035. feature.residues,
  30036. feature.seqlen,
  30037. feature.md5checksum,
  30038. feature.type_id,
  30039. feature.is_analysis,
  30040. feature.is_obsolete,
  30041. feature.timeaccessioned,
  30042. feature.timelastmodified
  30043. FROM (feature
  30044. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30045. WHERE ((cvterm.name)::text = 'plus_1_translational_frameshift'::text);
  30046. --
  30047. -- Name: plus_1_translationally_frameshifted; Type: VIEW; Schema: so; Owner: -
  30048. --
  30049. CREATE VIEW plus_1_translationally_frameshifted AS
  30050. SELECT feature.feature_id AS plus_1_translationally_frameshifted_id,
  30051. feature.feature_id,
  30052. feature.dbxref_id,
  30053. feature.organism_id,
  30054. feature.name,
  30055. feature.uniquename,
  30056. feature.residues,
  30057. feature.seqlen,
  30058. feature.md5checksum,
  30059. feature.type_id,
  30060. feature.is_analysis,
  30061. feature.is_obsolete,
  30062. feature.timeaccessioned,
  30063. feature.timelastmodified
  30064. FROM (feature
  30065. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30066. WHERE ((cvterm.name)::text = 'plus_1_translationally_frameshifted'::text);
  30067. --
  30068. -- Name: plus_2_frameshift_variant; Type: VIEW; Schema: so; Owner: -
  30069. --
  30070. CREATE VIEW plus_2_frameshift_variant AS
  30071. SELECT feature.feature_id AS plus_2_frameshift_variant_id,
  30072. feature.feature_id,
  30073. feature.dbxref_id,
  30074. feature.organism_id,
  30075. feature.name,
  30076. feature.uniquename,
  30077. feature.residues,
  30078. feature.seqlen,
  30079. feature.md5checksum,
  30080. feature.type_id,
  30081. feature.is_analysis,
  30082. feature.is_obsolete,
  30083. feature.timeaccessioned,
  30084. feature.timelastmodified
  30085. FROM (feature
  30086. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30087. WHERE ((cvterm.name)::text = 'plus_2_frameshift variant'::text);
  30088. --
  30089. -- Name: plus_2_framshift; Type: VIEW; Schema: so; Owner: -
  30090. --
  30091. CREATE VIEW plus_2_framshift AS
  30092. SELECT feature.feature_id AS plus_2_framshift_id,
  30093. feature.feature_id,
  30094. feature.dbxref_id,
  30095. feature.organism_id,
  30096. feature.name,
  30097. feature.uniquename,
  30098. feature.residues,
  30099. feature.seqlen,
  30100. feature.md5checksum,
  30101. feature.type_id,
  30102. feature.is_analysis,
  30103. feature.is_obsolete,
  30104. feature.timeaccessioned,
  30105. feature.timelastmodified
  30106. FROM (feature
  30107. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30108. WHERE ((cvterm.name)::text = 'plus_2_framshift'::text);
  30109. --
  30110. -- Name: plus_2_translational_frameshift; Type: VIEW; Schema: so; Owner: -
  30111. --
  30112. CREATE VIEW plus_2_translational_frameshift AS
  30113. SELECT feature.feature_id AS plus_2_translational_frameshift_id,
  30114. feature.feature_id,
  30115. feature.dbxref_id,
  30116. feature.organism_id,
  30117. feature.name,
  30118. feature.uniquename,
  30119. feature.residues,
  30120. feature.seqlen,
  30121. feature.md5checksum,
  30122. feature.type_id,
  30123. feature.is_analysis,
  30124. feature.is_obsolete,
  30125. feature.timeaccessioned,
  30126. feature.timelastmodified
  30127. FROM (feature
  30128. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30129. WHERE ((cvterm.name)::text = 'plus_2_translational_frameshift'::text);
  30130. --
  30131. -- Name: pna; Type: VIEW; Schema: so; Owner: -
  30132. --
  30133. CREATE VIEW pna AS
  30134. SELECT feature.feature_id AS pna_id,
  30135. feature.feature_id,
  30136. feature.dbxref_id,
  30137. feature.organism_id,
  30138. feature.name,
  30139. feature.uniquename,
  30140. feature.residues,
  30141. feature.seqlen,
  30142. feature.md5checksum,
  30143. feature.type_id,
  30144. feature.is_analysis,
  30145. feature.is_obsolete,
  30146. feature.timeaccessioned,
  30147. feature.timelastmodified
  30148. FROM (feature
  30149. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30150. WHERE ((cvterm.name)::text = 'PNA'::text);
  30151. --
  30152. -- Name: pna_oligo; Type: VIEW; Schema: so; Owner: -
  30153. --
  30154. CREATE VIEW pna_oligo AS
  30155. SELECT feature.feature_id AS pna_oligo_id,
  30156. feature.feature_id,
  30157. feature.dbxref_id,
  30158. feature.organism_id,
  30159. feature.name,
  30160. feature.uniquename,
  30161. feature.residues,
  30162. feature.seqlen,
  30163. feature.md5checksum,
  30164. feature.type_id,
  30165. feature.is_analysis,
  30166. feature.is_obsolete,
  30167. feature.timeaccessioned,
  30168. feature.timelastmodified
  30169. FROM (feature
  30170. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30171. WHERE ((cvterm.name)::text = 'PNA_oligo'::text);
  30172. --
  30173. -- Name: point_centromere; Type: VIEW; Schema: so; Owner: -
  30174. --
  30175. CREATE VIEW point_centromere AS
  30176. SELECT feature.feature_id AS point_centromere_id,
  30177. feature.feature_id,
  30178. feature.dbxref_id,
  30179. feature.organism_id,
  30180. feature.name,
  30181. feature.uniquename,
  30182. feature.residues,
  30183. feature.seqlen,
  30184. feature.md5checksum,
  30185. feature.type_id,
  30186. feature.is_analysis,
  30187. feature.is_obsolete,
  30188. feature.timeaccessioned,
  30189. feature.timelastmodified
  30190. FROM (feature
  30191. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30192. WHERE ((cvterm.name)::text = 'point_centromere'::text);
  30193. --
  30194. -- Name: point_mutation; Type: VIEW; Schema: so; Owner: -
  30195. --
  30196. CREATE VIEW point_mutation AS
  30197. SELECT feature.feature_id AS point_mutation_id,
  30198. feature.feature_id,
  30199. feature.dbxref_id,
  30200. feature.organism_id,
  30201. feature.name,
  30202. feature.uniquename,
  30203. feature.residues,
  30204. feature.seqlen,
  30205. feature.md5checksum,
  30206. feature.type_id,
  30207. feature.is_analysis,
  30208. feature.is_obsolete,
  30209. feature.timeaccessioned,
  30210. feature.timelastmodified
  30211. FROM (feature
  30212. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30213. WHERE ((cvterm.name)::text = 'point_mutation'::text);
  30214. --
  30215. -- Name: polinton; Type: VIEW; Schema: so; Owner: -
  30216. --
  30217. CREATE VIEW polinton AS
  30218. SELECT feature.feature_id AS polinton_id,
  30219. feature.feature_id,
  30220. feature.dbxref_id,
  30221. feature.organism_id,
  30222. feature.name,
  30223. feature.uniquename,
  30224. feature.residues,
  30225. feature.seqlen,
  30226. feature.md5checksum,
  30227. feature.type_id,
  30228. feature.is_analysis,
  30229. feature.is_obsolete,
  30230. feature.timeaccessioned,
  30231. feature.timelastmodified
  30232. FROM (feature
  30233. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30234. WHERE ((cvterm.name)::text = 'polinton'::text);
  30235. --
  30236. -- Name: polya_primed_cdna_clone; Type: VIEW; Schema: so; Owner: -
  30237. --
  30238. CREATE VIEW polya_primed_cdna_clone AS
  30239. SELECT feature.feature_id AS polya_primed_cdna_clone_id,
  30240. feature.feature_id,
  30241. feature.dbxref_id,
  30242. feature.organism_id,
  30243. feature.name,
  30244. feature.uniquename,
  30245. feature.residues,
  30246. feature.seqlen,
  30247. feature.md5checksum,
  30248. feature.type_id,
  30249. feature.is_analysis,
  30250. feature.is_obsolete,
  30251. feature.timeaccessioned,
  30252. feature.timelastmodified
  30253. FROM (feature
  30254. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30255. WHERE ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text);
  30256. --
  30257. -- Name: polya_sequence; Type: VIEW; Schema: so; Owner: -
  30258. --
  30259. CREATE VIEW polya_sequence AS
  30260. SELECT feature.feature_id AS polya_sequence_id,
  30261. feature.feature_id,
  30262. feature.dbxref_id,
  30263. feature.organism_id,
  30264. feature.name,
  30265. feature.uniquename,
  30266. feature.residues,
  30267. feature.seqlen,
  30268. feature.md5checksum,
  30269. feature.type_id,
  30270. feature.is_analysis,
  30271. feature.is_obsolete,
  30272. feature.timeaccessioned,
  30273. feature.timelastmodified
  30274. FROM (feature
  30275. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30276. WHERE ((cvterm.name)::text = 'polyA_sequence'::text);
  30277. --
  30278. -- Name: polya_signal_sequence; Type: VIEW; Schema: so; Owner: -
  30279. --
  30280. CREATE VIEW polya_signal_sequence AS
  30281. SELECT feature.feature_id AS polya_signal_sequence_id,
  30282. feature.feature_id,
  30283. feature.dbxref_id,
  30284. feature.organism_id,
  30285. feature.name,
  30286. feature.uniquename,
  30287. feature.residues,
  30288. feature.seqlen,
  30289. feature.md5checksum,
  30290. feature.type_id,
  30291. feature.is_analysis,
  30292. feature.is_obsolete,
  30293. feature.timeaccessioned,
  30294. feature.timelastmodified
  30295. FROM (feature
  30296. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30297. WHERE ((cvterm.name)::text = 'polyA_signal_sequence'::text);
  30298. --
  30299. -- Name: polya_site; Type: VIEW; Schema: so; Owner: -
  30300. --
  30301. CREATE VIEW polya_site AS
  30302. SELECT feature.feature_id AS polya_site_id,
  30303. feature.feature_id,
  30304. feature.dbxref_id,
  30305. feature.organism_id,
  30306. feature.name,
  30307. feature.uniquename,
  30308. feature.residues,
  30309. feature.seqlen,
  30310. feature.md5checksum,
  30311. feature.type_id,
  30312. feature.is_analysis,
  30313. feature.is_obsolete,
  30314. feature.timeaccessioned,
  30315. feature.timelastmodified
  30316. FROM (feature
  30317. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30318. WHERE ((cvterm.name)::text = 'polyA_site'::text);
  30319. --
  30320. -- Name: polyadenylated; Type: VIEW; Schema: so; Owner: -
  30321. --
  30322. CREATE VIEW polyadenylated AS
  30323. SELECT feature.feature_id AS polyadenylated_id,
  30324. feature.feature_id,
  30325. feature.dbxref_id,
  30326. feature.organism_id,
  30327. feature.name,
  30328. feature.uniquename,
  30329. feature.residues,
  30330. feature.seqlen,
  30331. feature.md5checksum,
  30332. feature.type_id,
  30333. feature.is_analysis,
  30334. feature.is_obsolete,
  30335. feature.timeaccessioned,
  30336. feature.timelastmodified
  30337. FROM (feature
  30338. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30339. WHERE ((cvterm.name)::text = 'polyadenylated'::text);
  30340. --
  30341. -- Name: polyadenylated_mrna; Type: VIEW; Schema: so; Owner: -
  30342. --
  30343. CREATE VIEW polyadenylated_mrna AS
  30344. SELECT feature.feature_id AS polyadenylated_mrna_id,
  30345. feature.feature_id,
  30346. feature.dbxref_id,
  30347. feature.organism_id,
  30348. feature.name,
  30349. feature.uniquename,
  30350. feature.residues,
  30351. feature.seqlen,
  30352. feature.md5checksum,
  30353. feature.type_id,
  30354. feature.is_analysis,
  30355. feature.is_obsolete,
  30356. feature.timeaccessioned,
  30357. feature.timelastmodified
  30358. FROM (feature
  30359. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30360. WHERE ((cvterm.name)::text = 'polyadenylated_mRNA'::text);
  30361. --
  30362. -- Name: polyadenylation_variant; Type: VIEW; Schema: so; Owner: -
  30363. --
  30364. CREATE VIEW polyadenylation_variant AS
  30365. SELECT feature.feature_id AS polyadenylation_variant_id,
  30366. feature.feature_id,
  30367. feature.dbxref_id,
  30368. feature.organism_id,
  30369. feature.name,
  30370. feature.uniquename,
  30371. feature.residues,
  30372. feature.seqlen,
  30373. feature.md5checksum,
  30374. feature.type_id,
  30375. feature.is_analysis,
  30376. feature.is_obsolete,
  30377. feature.timeaccessioned,
  30378. feature.timelastmodified
  30379. FROM (feature
  30380. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30381. WHERE ((((cvterm.name)::text = 'increased_polyadenylation_variant'::text) OR ((cvterm.name)::text = 'decreased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'polyadenylation_variant'::text));
  30382. --
  30383. -- Name: polycistronic; Type: VIEW; Schema: so; Owner: -
  30384. --
  30385. CREATE VIEW polycistronic AS
  30386. SELECT feature.feature_id AS polycistronic_id,
  30387. feature.feature_id,
  30388. feature.dbxref_id,
  30389. feature.organism_id,
  30390. feature.name,
  30391. feature.uniquename,
  30392. feature.residues,
  30393. feature.seqlen,
  30394. feature.md5checksum,
  30395. feature.type_id,
  30396. feature.is_analysis,
  30397. feature.is_obsolete,
  30398. feature.timeaccessioned,
  30399. feature.timelastmodified
  30400. FROM (feature
  30401. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30402. WHERE (((cvterm.name)::text = 'dicistronic'::text) OR ((cvterm.name)::text = 'polycistronic'::text));
  30403. --
  30404. -- Name: polycistronic_mrna; Type: VIEW; Schema: so; Owner: -
  30405. --
  30406. CREATE VIEW polycistronic_mrna AS
  30407. SELECT feature.feature_id AS polycistronic_mrna_id,
  30408. feature.feature_id,
  30409. feature.dbxref_id,
  30410. feature.organism_id,
  30411. feature.name,
  30412. feature.uniquename,
  30413. feature.residues,
  30414. feature.seqlen,
  30415. feature.md5checksum,
  30416. feature.type_id,
  30417. feature.is_analysis,
  30418. feature.is_obsolete,
  30419. feature.timeaccessioned,
  30420. feature.timelastmodified
  30421. FROM (feature
  30422. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30423. WHERE (((cvterm.name)::text = 'dicistronic_mRNA'::text) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text));
  30424. --
  30425. -- Name: polycistronic_primary_transcript; Type: VIEW; Schema: so; Owner: -
  30426. --
  30427. CREATE VIEW polycistronic_primary_transcript AS
  30428. SELECT feature.feature_id AS polycistronic_primary_transcript_id,
  30429. feature.feature_id,
  30430. feature.dbxref_id,
  30431. feature.organism_id,
  30432. feature.name,
  30433. feature.uniquename,
  30434. feature.residues,
  30435. feature.seqlen,
  30436. feature.md5checksum,
  30437. feature.type_id,
  30438. feature.is_analysis,
  30439. feature.is_obsolete,
  30440. feature.timeaccessioned,
  30441. feature.timelastmodified
  30442. FROM (feature
  30443. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30444. WHERE (((cvterm.name)::text = 'dicistronic_primary_transcript'::text) OR ((cvterm.name)::text = 'polycistronic_primary_transcript'::text));
  30445. --
  30446. -- Name: polycistronic_transcript; Type: VIEW; Schema: so; Owner: -
  30447. --
  30448. CREATE VIEW polycistronic_transcript AS
  30449. SELECT feature.feature_id AS polycistronic_transcript_id,
  30450. feature.feature_id,
  30451. feature.dbxref_id,
  30452. feature.organism_id,
  30453. feature.name,
  30454. feature.uniquename,
  30455. feature.residues,
  30456. feature.seqlen,
  30457. feature.md5checksum,
  30458. feature.type_id,
  30459. feature.is_analysis,
  30460. feature.is_obsolete,
  30461. feature.timeaccessioned,
  30462. feature.timelastmodified
  30463. FROM (feature
  30464. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30465. WHERE (((((((((cvterm.name)::text = 'dicistronic_transcript'::text) OR ((cvterm.name)::text = 'polycistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'polycistronic_transcript'::text));
  30466. --
  30467. -- Name: polymer_attribute; Type: VIEW; Schema: so; Owner: -
  30468. --
  30469. CREATE VIEW polymer_attribute AS
  30470. SELECT feature.feature_id AS polymer_attribute_id,
  30471. feature.feature_id,
  30472. feature.dbxref_id,
  30473. feature.organism_id,
  30474. feature.name,
  30475. feature.uniquename,
  30476. feature.residues,
  30477. feature.seqlen,
  30478. feature.md5checksum,
  30479. feature.type_id,
  30480. feature.is_analysis,
  30481. feature.is_obsolete,
  30482. feature.timeaccessioned,
  30483. feature.timelastmodified
  30484. FROM (feature
  30485. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30486. WHERE (((((((((((((((((((((((cvterm.name)::text = 'nucleic_acid'::text) OR ((cvterm.name)::text = 'synthetic_sequence'::text)) OR ((cvterm.name)::text = 'topology_attribute'::text)) OR ((cvterm.name)::text = 'peptidyl'::text)) OR ((cvterm.name)::text = 'DNA'::text)) OR ((cvterm.name)::text = 'RNA'::text)) OR ((cvterm.name)::text = 'morpholino_backbone'::text)) OR ((cvterm.name)::text = 'PNA'::text)) OR ((cvterm.name)::text = 'LNA'::text)) OR ((cvterm.name)::text = 'TNA'::text)) OR ((cvterm.name)::text = 'GNA'::text)) OR ((cvterm.name)::text = 'cDNA'::text)) OR ((cvterm.name)::text = 'genomic_DNA'::text)) OR ((cvterm.name)::text = 'single_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'double_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'R_GNA'::text)) OR ((cvterm.name)::text = 'S_GNA'::text)) OR ((cvterm.name)::text = 'random_sequence'::text)) OR ((cvterm.name)::text = 'designed_sequence'::text)) OR ((cvterm.name)::text = 'linear'::text)) OR ((cvterm.name)::text = 'circular'::text)) OR ((cvterm.name)::text = 'polymer_attribute'::text));
  30487. --
  30488. -- Name: polymerase_synthesis_read; Type: VIEW; Schema: so; Owner: -
  30489. --
  30490. CREATE VIEW polymerase_synthesis_read AS
  30491. SELECT feature.feature_id AS polymerase_synthesis_read_id,
  30492. feature.feature_id,
  30493. feature.dbxref_id,
  30494. feature.organism_id,
  30495. feature.name,
  30496. feature.uniquename,
  30497. feature.residues,
  30498. feature.seqlen,
  30499. feature.md5checksum,
  30500. feature.type_id,
  30501. feature.is_analysis,
  30502. feature.is_obsolete,
  30503. feature.timeaccessioned,
  30504. feature.timelastmodified
  30505. FROM (feature
  30506. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30507. WHERE ((cvterm.name)::text = 'polymerase_synthesis_read'::text);
  30508. --
  30509. -- Name: polymorphic_sequence_variant; Type: VIEW; Schema: so; Owner: -
  30510. --
  30511. CREATE VIEW polymorphic_sequence_variant AS
  30512. SELECT feature.feature_id AS polymorphic_sequence_variant_id,
  30513. feature.feature_id,
  30514. feature.dbxref_id,
  30515. feature.organism_id,
  30516. feature.name,
  30517. feature.uniquename,
  30518. feature.residues,
  30519. feature.seqlen,
  30520. feature.md5checksum,
  30521. feature.type_id,
  30522. feature.is_analysis,
  30523. feature.is_obsolete,
  30524. feature.timeaccessioned,
  30525. feature.timelastmodified
  30526. FROM (feature
  30527. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30528. WHERE ((cvterm.name)::text = 'polymorphic_sequence_variant'::text);
  30529. --
  30530. -- Name: polymorphic_variant; Type: VIEW; Schema: so; Owner: -
  30531. --
  30532. CREATE VIEW polymorphic_variant AS
  30533. SELECT feature.feature_id AS polymorphic_variant_id,
  30534. feature.feature_id,
  30535. feature.dbxref_id,
  30536. feature.organism_id,
  30537. feature.name,
  30538. feature.uniquename,
  30539. feature.residues,
  30540. feature.seqlen,
  30541. feature.md5checksum,
  30542. feature.type_id,
  30543. feature.is_analysis,
  30544. feature.is_obsolete,
  30545. feature.timeaccessioned,
  30546. feature.timelastmodified
  30547. FROM (feature
  30548. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30549. WHERE ((cvterm.name)::text = 'polymorphic_variant'::text);
  30550. --
  30551. -- Name: polypeptide; Type: VIEW; Schema: so; Owner: -
  30552. --
  30553. CREATE VIEW polypeptide AS
  30554. SELECT feature.feature_id AS polypeptide_id,
  30555. feature.feature_id,
  30556. feature.dbxref_id,
  30557. feature.organism_id,
  30558. feature.name,
  30559. feature.uniquename,
  30560. feature.residues,
  30561. feature.seqlen,
  30562. feature.md5checksum,
  30563. feature.type_id,
  30564. feature.is_analysis,
  30565. feature.is_obsolete,
  30566. feature.timeaccessioned,
  30567. feature.timelastmodified
  30568. FROM (feature
  30569. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30570. WHERE ((cvterm.name)::text = 'polypeptide'::text);
  30571. --
  30572. -- Name: polypeptide_binding_motif; Type: VIEW; Schema: so; Owner: -
  30573. --
  30574. CREATE VIEW polypeptide_binding_motif AS
  30575. SELECT feature.feature_id AS polypeptide_binding_motif_id,
  30576. feature.feature_id,
  30577. feature.dbxref_id,
  30578. feature.organism_id,
  30579. feature.name,
  30580. feature.uniquename,
  30581. feature.residues,
  30582. feature.seqlen,
  30583. feature.md5checksum,
  30584. feature.type_id,
  30585. feature.is_analysis,
  30586. feature.is_obsolete,
  30587. feature.timeaccessioned,
  30588. feature.timelastmodified
  30589. FROM (feature
  30590. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30591. WHERE ((cvterm.name)::text = 'polypeptide_binding_motif'::text);
  30592. --
  30593. -- Name: polypeptide_calcium_ion_contact_site; Type: VIEW; Schema: so; Owner: -
  30594. --
  30595. CREATE VIEW polypeptide_calcium_ion_contact_site AS
  30596. SELECT feature.feature_id AS polypeptide_calcium_ion_contact_site_id,
  30597. feature.feature_id,
  30598. feature.dbxref_id,
  30599. feature.organism_id,
  30600. feature.name,
  30601. feature.uniquename,
  30602. feature.residues,
  30603. feature.seqlen,
  30604. feature.md5checksum,
  30605. feature.type_id,
  30606. feature.is_analysis,
  30607. feature.is_obsolete,
  30608. feature.timeaccessioned,
  30609. feature.timelastmodified
  30610. FROM (feature
  30611. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30612. WHERE ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text);
  30613. --
  30614. -- Name: polypeptide_catalytic_motif; Type: VIEW; Schema: so; Owner: -
  30615. --
  30616. CREATE VIEW polypeptide_catalytic_motif AS
  30617. SELECT feature.feature_id AS polypeptide_catalytic_motif_id,
  30618. feature.feature_id,
  30619. feature.dbxref_id,
  30620. feature.organism_id,
  30621. feature.name,
  30622. feature.uniquename,
  30623. feature.residues,
  30624. feature.seqlen,
  30625. feature.md5checksum,
  30626. feature.type_id,
  30627. feature.is_analysis,
  30628. feature.is_obsolete,
  30629. feature.timeaccessioned,
  30630. feature.timelastmodified
  30631. FROM (feature
  30632. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30633. WHERE ((cvterm.name)::text = 'polypeptide_catalytic_motif'::text);
  30634. --
  30635. -- Name: polypeptide_cobalt_ion_contact_site; Type: VIEW; Schema: so; Owner: -
  30636. --
  30637. CREATE VIEW polypeptide_cobalt_ion_contact_site AS
  30638. SELECT feature.feature_id AS polypeptide_cobalt_ion_contact_site_id,
  30639. feature.feature_id,
  30640. feature.dbxref_id,
  30641. feature.organism_id,
  30642. feature.name,
  30643. feature.uniquename,
  30644. feature.residues,
  30645. feature.seqlen,
  30646. feature.md5checksum,
  30647. feature.type_id,
  30648. feature.is_analysis,
  30649. feature.is_obsolete,
  30650. feature.timeaccessioned,
  30651. feature.timelastmodified
  30652. FROM (feature
  30653. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30654. WHERE ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text);
  30655. --
  30656. -- Name: polypeptide_conserved_motif; Type: VIEW; Schema: so; Owner: -
  30657. --
  30658. CREATE VIEW polypeptide_conserved_motif AS
  30659. SELECT feature.feature_id AS polypeptide_conserved_motif_id,
  30660. feature.feature_id,
  30661. feature.dbxref_id,
  30662. feature.organism_id,
  30663. feature.name,
  30664. feature.uniquename,
  30665. feature.residues,
  30666. feature.seqlen,
  30667. feature.md5checksum,
  30668. feature.type_id,
  30669. feature.is_analysis,
  30670. feature.is_obsolete,
  30671. feature.timeaccessioned,
  30672. feature.timelastmodified
  30673. FROM (feature
  30674. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30675. WHERE ((cvterm.name)::text = 'polypeptide_conserved_motif'::text);
  30676. --
  30677. -- Name: polypeptide_conserved_region; Type: VIEW; Schema: so; Owner: -
  30678. --
  30679. CREATE VIEW polypeptide_conserved_region AS
  30680. SELECT feature.feature_id AS polypeptide_conserved_region_id,
  30681. feature.feature_id,
  30682. feature.dbxref_id,
  30683. feature.organism_id,
  30684. feature.name,
  30685. feature.uniquename,
  30686. feature.residues,
  30687. feature.seqlen,
  30688. feature.md5checksum,
  30689. feature.type_id,
  30690. feature.is_analysis,
  30691. feature.is_obsolete,
  30692. feature.timeaccessioned,
  30693. feature.timelastmodified
  30694. FROM (feature
  30695. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30696. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'polypeptide_domain'::text) OR ((cvterm.name)::text = 'polypeptide_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_repeat'::text)) OR ((cvterm.name)::text = 'biochemical_region_of_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_conserved_motif'::text)) OR ((cvterm.name)::text = 'post_translationally_modified_region'::text)) OR ((cvterm.name)::text = 'conformational_switch'::text)) OR ((cvterm.name)::text = 'molecular_contact_region'::text)) OR ((cvterm.name)::text = 'polypeptide_binding_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_catalytic_motif'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text)) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_conserved_region'::text));
  30697. --
  30698. -- Name: polypeptide_copper_ion_contact_site; Type: VIEW; Schema: so; Owner: -
  30699. --
  30700. CREATE VIEW polypeptide_copper_ion_contact_site AS
  30701. SELECT feature.feature_id AS polypeptide_copper_ion_contact_site_id,
  30702. feature.feature_id,
  30703. feature.dbxref_id,
  30704. feature.organism_id,
  30705. feature.name,
  30706. feature.uniquename,
  30707. feature.residues,
  30708. feature.seqlen,
  30709. feature.md5checksum,
  30710. feature.type_id,
  30711. feature.is_analysis,
  30712. feature.is_obsolete,
  30713. feature.timeaccessioned,
  30714. feature.timelastmodified
  30715. FROM (feature
  30716. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30717. WHERE ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text);
  30718. --
  30719. -- Name: polypeptide_dna_contact; Type: VIEW; Schema: so; Owner: -
  30720. --
  30721. CREATE VIEW polypeptide_dna_contact AS
  30722. SELECT feature.feature_id AS polypeptide_dna_contact_id,
  30723. feature.feature_id,
  30724. feature.dbxref_id,
  30725. feature.organism_id,
  30726. feature.name,
  30727. feature.uniquename,
  30728. feature.residues,
  30729. feature.seqlen,
  30730. feature.md5checksum,
  30731. feature.type_id,
  30732. feature.is_analysis,
  30733. feature.is_obsolete,
  30734. feature.timeaccessioned,
  30735. feature.timelastmodified
  30736. FROM (feature
  30737. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30738. WHERE ((cvterm.name)::text = 'polypeptide_DNA_contact'::text);
  30739. --
  30740. -- Name: polypeptide_domain; Type: VIEW; Schema: so; Owner: -
  30741. --
  30742. CREATE VIEW polypeptide_domain AS
  30743. SELECT feature.feature_id AS polypeptide_domain_id,
  30744. feature.feature_id,
  30745. feature.dbxref_id,
  30746. feature.organism_id,
  30747. feature.name,
  30748. feature.uniquename,
  30749. feature.residues,
  30750. feature.seqlen,
  30751. feature.md5checksum,
  30752. feature.type_id,
  30753. feature.is_analysis,
  30754. feature.is_obsolete,
  30755. feature.timeaccessioned,
  30756. feature.timelastmodified
  30757. FROM (feature
  30758. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30759. WHERE ((cvterm.name)::text = 'polypeptide_domain'::text);
  30760. --
  30761. -- Name: polypeptide_function_variant; Type: VIEW; Schema: so; Owner: -
  30762. --
  30763. CREATE VIEW polypeptide_function_variant AS
  30764. SELECT feature.feature_id AS polypeptide_function_variant_id,
  30765. feature.feature_id,
  30766. feature.dbxref_id,
  30767. feature.organism_id,
  30768. feature.name,
  30769. feature.uniquename,
  30770. feature.residues,
  30771. feature.seqlen,
  30772. feature.md5checksum,
  30773. feature.type_id,
  30774. feature.is_analysis,
  30775. feature.is_obsolete,
  30776. feature.timeaccessioned,
  30777. feature.timelastmodified
  30778. FROM (feature
  30779. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30780. WHERE (((((((((cvterm.name)::text = 'polypeptide_gain_of_function_variant'::text) OR ((cvterm.name)::text = 'polypeptide_localization_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_loss_of_function_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_post_translational_processing_variant'::text)) OR ((cvterm.name)::text = 'inactive_ligand_binding_site'::text)) OR ((cvterm.name)::text = 'polypeptide_partial_loss_of_function'::text)) OR ((cvterm.name)::text = 'inactive_catalytic_site'::text)) OR ((cvterm.name)::text = 'polypeptide_function_variant'::text));
  30781. --
  30782. -- Name: polypeptide_fusion; Type: VIEW; Schema: so; Owner: -
  30783. --
  30784. CREATE VIEW polypeptide_fusion AS
  30785. SELECT feature.feature_id AS polypeptide_fusion_id,
  30786. feature.feature_id,
  30787. feature.dbxref_id,
  30788. feature.organism_id,
  30789. feature.name,
  30790. feature.uniquename,
  30791. feature.residues,
  30792. feature.seqlen,
  30793. feature.md5checksum,
  30794. feature.type_id,
  30795. feature.is_analysis,
  30796. feature.is_obsolete,
  30797. feature.timeaccessioned,
  30798. feature.timelastmodified
  30799. FROM (feature
  30800. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30801. WHERE ((cvterm.name)::text = 'polypeptide_fusion'::text);
  30802. --
  30803. -- Name: polypeptide_gain_of_function_variant; Type: VIEW; Schema: so; Owner: -
  30804. --
  30805. CREATE VIEW polypeptide_gain_of_function_variant AS
  30806. SELECT feature.feature_id AS polypeptide_gain_of_function_variant_id,
  30807. feature.feature_id,
  30808. feature.dbxref_id,
  30809. feature.organism_id,
  30810. feature.name,
  30811. feature.uniquename,
  30812. feature.residues,
  30813. feature.seqlen,
  30814. feature.md5checksum,
  30815. feature.type_id,
  30816. feature.is_analysis,
  30817. feature.is_obsolete,
  30818. feature.timeaccessioned,
  30819. feature.timelastmodified
  30820. FROM (feature
  30821. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30822. WHERE ((cvterm.name)::text = 'polypeptide_gain_of_function_variant'::text);
  30823. --
  30824. -- Name: polypeptide_iron_ion_contact_site; Type: VIEW; Schema: so; Owner: -
  30825. --
  30826. CREATE VIEW polypeptide_iron_ion_contact_site AS
  30827. SELECT feature.feature_id AS polypeptide_iron_ion_contact_site_id,
  30828. feature.feature_id,
  30829. feature.dbxref_id,
  30830. feature.organism_id,
  30831. feature.name,
  30832. feature.uniquename,
  30833. feature.residues,
  30834. feature.seqlen,
  30835. feature.md5checksum,
  30836. feature.type_id,
  30837. feature.is_analysis,
  30838. feature.is_obsolete,
  30839. feature.timeaccessioned,
  30840. feature.timelastmodified
  30841. FROM (feature
  30842. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30843. WHERE ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text);
  30844. --
  30845. -- Name: polypeptide_ligand_contact; Type: VIEW; Schema: so; Owner: -
  30846. --
  30847. CREATE VIEW polypeptide_ligand_contact AS
  30848. SELECT feature.feature_id AS polypeptide_ligand_contact_id,
  30849. feature.feature_id,
  30850. feature.dbxref_id,
  30851. feature.organism_id,
  30852. feature.name,
  30853. feature.uniquename,
  30854. feature.residues,
  30855. feature.seqlen,
  30856. feature.md5checksum,
  30857. feature.type_id,
  30858. feature.is_analysis,
  30859. feature.is_obsolete,
  30860. feature.timeaccessioned,
  30861. feature.timelastmodified
  30862. FROM (feature
  30863. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30864. WHERE ((cvterm.name)::text = 'polypeptide_ligand_contact'::text);
  30865. --
  30866. -- Name: polypeptide_localization_variant; Type: VIEW; Schema: so; Owner: -
  30867. --
  30868. CREATE VIEW polypeptide_localization_variant AS
  30869. SELECT feature.feature_id AS polypeptide_localization_variant_id,
  30870. feature.feature_id,
  30871. feature.dbxref_id,
  30872. feature.organism_id,
  30873. feature.name,
  30874. feature.uniquename,
  30875. feature.residues,
  30876. feature.seqlen,
  30877. feature.md5checksum,
  30878. feature.type_id,
  30879. feature.is_analysis,
  30880. feature.is_obsolete,
  30881. feature.timeaccessioned,
  30882. feature.timelastmodified
  30883. FROM (feature
  30884. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30885. WHERE ((cvterm.name)::text = 'polypeptide_localization_variant'::text);
  30886. --
  30887. -- Name: polypeptide_loss_of_function_variant; Type: VIEW; Schema: so; Owner: -
  30888. --
  30889. CREATE VIEW polypeptide_loss_of_function_variant AS
  30890. SELECT feature.feature_id AS polypeptide_loss_of_function_variant_id,
  30891. feature.feature_id,
  30892. feature.dbxref_id,
  30893. feature.organism_id,
  30894. feature.name,
  30895. feature.uniquename,
  30896. feature.residues,
  30897. feature.seqlen,
  30898. feature.md5checksum,
  30899. feature.type_id,
  30900. feature.is_analysis,
  30901. feature.is_obsolete,
  30902. feature.timeaccessioned,
  30903. feature.timelastmodified
  30904. FROM (feature
  30905. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30906. WHERE (((((cvterm.name)::text = 'inactive_ligand_binding_site'::text) OR ((cvterm.name)::text = 'polypeptide_partial_loss_of_function'::text)) OR ((cvterm.name)::text = 'inactive_catalytic_site'::text)) OR ((cvterm.name)::text = 'polypeptide_loss_of_function_variant'::text));
  30907. --
  30908. -- Name: polypeptide_magnesium_ion_contact_site; Type: VIEW; Schema: so; Owner: -
  30909. --
  30910. CREATE VIEW polypeptide_magnesium_ion_contact_site AS
  30911. SELECT feature.feature_id AS polypeptide_magnesium_ion_contact_site_id,
  30912. feature.feature_id,
  30913. feature.dbxref_id,
  30914. feature.organism_id,
  30915. feature.name,
  30916. feature.uniquename,
  30917. feature.residues,
  30918. feature.seqlen,
  30919. feature.md5checksum,
  30920. feature.type_id,
  30921. feature.is_analysis,
  30922. feature.is_obsolete,
  30923. feature.timeaccessioned,
  30924. feature.timelastmodified
  30925. FROM (feature
  30926. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30927. WHERE ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text);
  30928. --
  30929. -- Name: polypeptide_manganese_ion_contact_site; Type: VIEW; Schema: so; Owner: -
  30930. --
  30931. CREATE VIEW polypeptide_manganese_ion_contact_site AS
  30932. SELECT feature.feature_id AS polypeptide_manganese_ion_contact_site_id,
  30933. feature.feature_id,
  30934. feature.dbxref_id,
  30935. feature.organism_id,
  30936. feature.name,
  30937. feature.uniquename,
  30938. feature.residues,
  30939. feature.seqlen,
  30940. feature.md5checksum,
  30941. feature.type_id,
  30942. feature.is_analysis,
  30943. feature.is_obsolete,
  30944. feature.timeaccessioned,
  30945. feature.timelastmodified
  30946. FROM (feature
  30947. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30948. WHERE ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text);
  30949. --
  30950. -- Name: polypeptide_metal_contact; Type: VIEW; Schema: so; Owner: -
  30951. --
  30952. CREATE VIEW polypeptide_metal_contact AS
  30953. SELECT feature.feature_id AS polypeptide_metal_contact_id,
  30954. feature.feature_id,
  30955. feature.dbxref_id,
  30956. feature.organism_id,
  30957. feature.name,
  30958. feature.uniquename,
  30959. feature.residues,
  30960. feature.seqlen,
  30961. feature.md5checksum,
  30962. feature.type_id,
  30963. feature.is_analysis,
  30964. feature.is_obsolete,
  30965. feature.timeaccessioned,
  30966. feature.timelastmodified
  30967. FROM (feature
  30968. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30969. WHERE ((((((((((((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text));
  30970. --
  30971. -- Name: polypeptide_molybdenum_ion_contact_site; Type: VIEW; Schema: so; Owner: -
  30972. --
  30973. CREATE VIEW polypeptide_molybdenum_ion_contact_site AS
  30974. SELECT feature.feature_id AS polypeptide_molybdenum_ion_contact_site_id,
  30975. feature.feature_id,
  30976. feature.dbxref_id,
  30977. feature.organism_id,
  30978. feature.name,
  30979. feature.uniquename,
  30980. feature.residues,
  30981. feature.seqlen,
  30982. feature.md5checksum,
  30983. feature.type_id,
  30984. feature.is_analysis,
  30985. feature.is_obsolete,
  30986. feature.timeaccessioned,
  30987. feature.timelastmodified
  30988. FROM (feature
  30989. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  30990. WHERE ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text);
  30991. --
  30992. -- Name: polypeptide_motif; Type: VIEW; Schema: so; Owner: -
  30993. --
  30994. CREATE VIEW polypeptide_motif AS
  30995. SELECT feature.feature_id AS polypeptide_motif_id,
  30996. feature.feature_id,
  30997. feature.dbxref_id,
  30998. feature.organism_id,
  30999. feature.name,
  31000. feature.uniquename,
  31001. feature.residues,
  31002. feature.seqlen,
  31003. feature.md5checksum,
  31004. feature.type_id,
  31005. feature.is_analysis,
  31006. feature.is_obsolete,
  31007. feature.timeaccessioned,
  31008. feature.timelastmodified
  31009. FROM (feature
  31010. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31011. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'biochemical_region_of_peptide'::text) OR ((cvterm.name)::text = 'polypeptide_conserved_motif'::text)) OR ((cvterm.name)::text = 'post_translationally_modified_region'::text)) OR ((cvterm.name)::text = 'conformational_switch'::text)) OR ((cvterm.name)::text = 'molecular_contact_region'::text)) OR ((cvterm.name)::text = 'polypeptide_binding_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_catalytic_motif'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text)) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_motif'::text));
  31012. --
  31013. -- Name: polypeptide_nest_left_right_motif; Type: VIEW; Schema: so; Owner: -
  31014. --
  31015. CREATE VIEW polypeptide_nest_left_right_motif AS
  31016. SELECT feature.feature_id AS polypeptide_nest_left_right_motif_id,
  31017. feature.feature_id,
  31018. feature.dbxref_id,
  31019. feature.organism_id,
  31020. feature.name,
  31021. feature.uniquename,
  31022. feature.residues,
  31023. feature.seqlen,
  31024. feature.md5checksum,
  31025. feature.type_id,
  31026. feature.is_analysis,
  31027. feature.is_obsolete,
  31028. feature.timeaccessioned,
  31029. feature.timelastmodified
  31030. FROM (feature
  31031. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31032. WHERE ((cvterm.name)::text = 'polypeptide_nest_left_right_motif'::text);
  31033. --
  31034. -- Name: polypeptide_nest_motif; Type: VIEW; Schema: so; Owner: -
  31035. --
  31036. CREATE VIEW polypeptide_nest_motif AS
  31037. SELECT feature.feature_id AS polypeptide_nest_motif_id,
  31038. feature.feature_id,
  31039. feature.dbxref_id,
  31040. feature.organism_id,
  31041. feature.name,
  31042. feature.uniquename,
  31043. feature.residues,
  31044. feature.seqlen,
  31045. feature.md5checksum,
  31046. feature.type_id,
  31047. feature.is_analysis,
  31048. feature.is_obsolete,
  31049. feature.timeaccessioned,
  31050. feature.timelastmodified
  31051. FROM (feature
  31052. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31053. WHERE ((((cvterm.name)::text = 'polypeptide_nest_left_right_motif'::text) OR ((cvterm.name)::text = 'polypeptide_nest_right_left_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_motif'::text));
  31054. --
  31055. -- Name: polypeptide_nest_right_left_motif; Type: VIEW; Schema: so; Owner: -
  31056. --
  31057. CREATE VIEW polypeptide_nest_right_left_motif AS
  31058. SELECT feature.feature_id AS polypeptide_nest_right_left_motif_id,
  31059. feature.feature_id,
  31060. feature.dbxref_id,
  31061. feature.organism_id,
  31062. feature.name,
  31063. feature.uniquename,
  31064. feature.residues,
  31065. feature.seqlen,
  31066. feature.md5checksum,
  31067. feature.type_id,
  31068. feature.is_analysis,
  31069. feature.is_obsolete,
  31070. feature.timeaccessioned,
  31071. feature.timelastmodified
  31072. FROM (feature
  31073. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31074. WHERE ((cvterm.name)::text = 'polypeptide_nest_right_left_motif'::text);
  31075. --
  31076. -- Name: polypeptide_nickel_ion_contact_site; Type: VIEW; Schema: so; Owner: -
  31077. --
  31078. CREATE VIEW polypeptide_nickel_ion_contact_site AS
  31079. SELECT feature.feature_id AS polypeptide_nickel_ion_contact_site_id,
  31080. feature.feature_id,
  31081. feature.dbxref_id,
  31082. feature.organism_id,
  31083. feature.name,
  31084. feature.uniquename,
  31085. feature.residues,
  31086. feature.seqlen,
  31087. feature.md5checksum,
  31088. feature.type_id,
  31089. feature.is_analysis,
  31090. feature.is_obsolete,
  31091. feature.timeaccessioned,
  31092. feature.timelastmodified
  31093. FROM (feature
  31094. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31095. WHERE ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text);
  31096. --
  31097. -- Name: polypeptide_partial_loss_of_function; Type: VIEW; Schema: so; Owner: -
  31098. --
  31099. CREATE VIEW polypeptide_partial_loss_of_function AS
  31100. SELECT feature.feature_id AS polypeptide_partial_loss_of_function_id,
  31101. feature.feature_id,
  31102. feature.dbxref_id,
  31103. feature.organism_id,
  31104. feature.name,
  31105. feature.uniquename,
  31106. feature.residues,
  31107. feature.seqlen,
  31108. feature.md5checksum,
  31109. feature.type_id,
  31110. feature.is_analysis,
  31111. feature.is_obsolete,
  31112. feature.timeaccessioned,
  31113. feature.timelastmodified
  31114. FROM (feature
  31115. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31116. WHERE ((cvterm.name)::text = 'polypeptide_partial_loss_of_function'::text);
  31117. --
  31118. -- Name: polypeptide_post_translational_processing_variant; Type: VIEW; Schema: so; Owner: -
  31119. --
  31120. CREATE VIEW polypeptide_post_translational_processing_variant AS
  31121. SELECT feature.feature_id AS polypeptide_post_translational_processing_variant_id,
  31122. feature.feature_id,
  31123. feature.dbxref_id,
  31124. feature.organism_id,
  31125. feature.name,
  31126. feature.uniquename,
  31127. feature.residues,
  31128. feature.seqlen,
  31129. feature.md5checksum,
  31130. feature.type_id,
  31131. feature.is_analysis,
  31132. feature.is_obsolete,
  31133. feature.timeaccessioned,
  31134. feature.timelastmodified
  31135. FROM (feature
  31136. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31137. WHERE ((cvterm.name)::text = 'polypeptide_post_translational_processing_variant'::text);
  31138. --
  31139. -- Name: polypeptide_region; Type: VIEW; Schema: so; Owner: -
  31140. --
  31141. CREATE VIEW polypeptide_region AS
  31142. SELECT feature.feature_id AS polypeptide_region_id,
  31143. feature.feature_id,
  31144. feature.dbxref_id,
  31145. feature.organism_id,
  31146. feature.name,
  31147. feature.uniquename,
  31148. feature.residues,
  31149. feature.seqlen,
  31150. feature.md5checksum,
  31151. feature.type_id,
  31152. feature.is_analysis,
  31153. feature.is_obsolete,
  31154. feature.timeaccessioned,
  31155. feature.timelastmodified
  31156. FROM (feature
  31157. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31158. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'mature_protein_region'::text) OR ((cvterm.name)::text = 'immature_peptide_region'::text)) OR ((cvterm.name)::text = 'compositionally_biased_region_of_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_structural_region'::text)) OR ((cvterm.name)::text = 'polypeptide_variation_site'::text)) OR ((cvterm.name)::text = 'peptide_localization_signal'::text)) OR ((cvterm.name)::text = 'cleaved_peptide_region'::text)) OR ((cvterm.name)::text = 'hydrophobic_region_of_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_conserved_region'::text)) OR ((cvterm.name)::text = 'active_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_domain'::text)) OR ((cvterm.name)::text = 'membrane_structure'::text)) OR ((cvterm.name)::text = 'extramembrane_polypeptide_region'::text)) OR ((cvterm.name)::text = 'intramembrane_polypeptide_region'::text)) OR ((cvterm.name)::text = 'polypeptide_secondary_structure'::text)) OR ((cvterm.name)::text = 'polypeptide_structural_motif'::text)) OR ((cvterm.name)::text = 'intrinsically_unstructured_polypeptide_region'::text)) OR ((cvterm.name)::text = 'cytoplasmic_polypeptide_region'::text)) OR ((cvterm.name)::text = 'non_cytoplasmic_polypeptide_region'::text)) OR ((cvterm.name)::text = 'membrane_peptide_loop'::text)) OR ((cvterm.name)::text = 'transmembrane_polypeptide_region'::text)) OR ((cvterm.name)::text = 'asx_motif'::text)) OR ((cvterm.name)::text = 'beta_bulge'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop'::text)) OR ((cvterm.name)::text = 'beta_strand'::text)) OR ((cvterm.name)::text = 'peptide_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_motif'::text)) OR ((cvterm.name)::text = 'schellmann_loop'::text)) OR ((cvterm.name)::text = 'serine_threonine_motif'::text)) OR ((cvterm.name)::text = 'serine_threonine_staple_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_turn_motif'::text)) OR ((cvterm.name)::text = 'catmat_left_handed_three'::text)) OR ((cvterm.name)::text = 'catmat_left_handed_four'::text)) OR ((cvterm.name)::text = 'catmat_right_handed_three'::text)) OR ((cvterm.name)::text = 'catmat_right_handed_four'::text)) OR ((cvterm.name)::text = 'alpha_beta_motif'::text)) OR ((cvterm.name)::text = 'peptide_coil'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop_five'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop_six'::text)) OR ((cvterm.name)::text = 'antiparallel_beta_strand'::text)) OR ((cvterm.name)::text = 'parallel_beta_strand'::text)) OR ((cvterm.name)::text = 'left_handed_peptide_helix'::text)) OR ((cvterm.name)::text = 'right_handed_peptide_helix'::text)) OR ((cvterm.name)::text = 'alpha_helix'::text)) OR ((cvterm.name)::text = 'pi_helix'::text)) OR ((cvterm.name)::text = 'three_ten_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_left_right_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_right_left_motif'::text)) OR ((cvterm.name)::text = 'schellmann_loop_seven'::text)) OR ((cvterm.name)::text = 'schellmann_loop_six'::text)) OR ((cvterm.name)::text = 'asx_turn'::text)) OR ((cvterm.name)::text = 'beta_turn'::text)) OR ((cvterm.name)::text = 'gamma_turn'::text)) OR ((cvterm.name)::text = 'serine_threonine_turn'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six'::text)) OR ((cvterm.name)::text = 'beta_turn_type_eight'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_b'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_one'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'gamma_turn_classic'::text)) OR ((cvterm.name)::text = 'gamma_turn_inverse'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'coiled_coil'::text)) OR ((cvterm.name)::text = 'helix_turn_helix'::text)) OR ((cvterm.name)::text = 'natural_variant_site'::text)) OR ((cvterm.name)::text = 'mutated_variant_site'::text)) OR ((cvterm.name)::text = 'alternate_sequence_site'::text)) OR ((cvterm.name)::text = 'signal_peptide'::text)) OR ((cvterm.name)::text = 'transit_peptide'::text)) OR ((cvterm.name)::text = 'nuclear_localization_signal'::text)) OR ((cvterm.name)::text = 'endosomal_localization_signal'::text)) OR ((cvterm.name)::text = 'lysosomal_localization_signal'::text)) OR ((cvterm.name)::text = 'nuclear_export_signal'::text)) OR ((cvterm.name)::text = 'nuclear_rim_localization_signal'::text)) OR ((cvterm.name)::text = 'cleaved_initiator_methionine'::text)) OR ((cvterm.name)::text = 'intein'::text)) OR ((cvterm.name)::text = 'propeptide_cleavage_site'::text)) OR ((cvterm.name)::text = 'propeptide'::text)) OR ((cvterm.name)::text = 'cleaved_for_gpi_anchor_region'::text)) OR ((cvterm.name)::text = 'lipoprotein_signal_peptide'::text)) OR ((cvterm.name)::text = 'n_terminal_region'::text)) OR ((cvterm.name)::text = 'c_terminal_region'::text)) OR ((cvterm.name)::text = 'central_hydrophobic_region_of_signal_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_domain'::text)) OR ((cvterm.name)::text = 'polypeptide_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_repeat'::text)) OR ((cvterm.name)::text = 'biochemical_region_of_peptide'::text)) OR ((cvterm.name)::text = 'polypeptide_conserved_motif'::text)) OR ((cvterm.name)::text = 'post_translationally_modified_region'::text)) OR ((cvterm.name)::text = 'conformational_switch'::text)) OR ((cvterm.name)::text = 'molecular_contact_region'::text)) OR ((cvterm.name)::text = 'polypeptide_binding_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_catalytic_motif'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'polypeptide_metal_contact'::text)) OR ((cvterm.name)::text = 'protein_protein_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_ligand_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_DNA_contact'::text)) OR ((cvterm.name)::text = 'polypeptide_calcium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_cobalt_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_copper_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_iron_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_magnesium_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_manganese_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_molybdenum_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_nickel_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text)) OR ((cvterm.name)::text = 'polypeptide_region'::text));
  31159. --
  31160. -- Name: polypeptide_repeat; Type: VIEW; Schema: so; Owner: -
  31161. --
  31162. CREATE VIEW polypeptide_repeat AS
  31163. SELECT feature.feature_id AS polypeptide_repeat_id,
  31164. feature.feature_id,
  31165. feature.dbxref_id,
  31166. feature.organism_id,
  31167. feature.name,
  31168. feature.uniquename,
  31169. feature.residues,
  31170. feature.seqlen,
  31171. feature.md5checksum,
  31172. feature.type_id,
  31173. feature.is_analysis,
  31174. feature.is_obsolete,
  31175. feature.timeaccessioned,
  31176. feature.timelastmodified
  31177. FROM (feature
  31178. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31179. WHERE ((cvterm.name)::text = 'polypeptide_repeat'::text);
  31180. --
  31181. -- Name: polypeptide_secondary_structure; Type: VIEW; Schema: so; Owner: -
  31182. --
  31183. CREATE VIEW polypeptide_secondary_structure AS
  31184. SELECT feature.feature_id AS polypeptide_secondary_structure_id,
  31185. feature.feature_id,
  31186. feature.dbxref_id,
  31187. feature.organism_id,
  31188. feature.name,
  31189. feature.uniquename,
  31190. feature.residues,
  31191. feature.seqlen,
  31192. feature.md5checksum,
  31193. feature.type_id,
  31194. feature.is_analysis,
  31195. feature.is_obsolete,
  31196. feature.timeaccessioned,
  31197. feature.timelastmodified
  31198. FROM (feature
  31199. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31200. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'asx_motif'::text) OR ((cvterm.name)::text = 'beta_bulge'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop'::text)) OR ((cvterm.name)::text = 'beta_strand'::text)) OR ((cvterm.name)::text = 'peptide_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_motif'::text)) OR ((cvterm.name)::text = 'schellmann_loop'::text)) OR ((cvterm.name)::text = 'serine_threonine_motif'::text)) OR ((cvterm.name)::text = 'serine_threonine_staple_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_turn_motif'::text)) OR ((cvterm.name)::text = 'catmat_left_handed_three'::text)) OR ((cvterm.name)::text = 'catmat_left_handed_four'::text)) OR ((cvterm.name)::text = 'catmat_right_handed_three'::text)) OR ((cvterm.name)::text = 'catmat_right_handed_four'::text)) OR ((cvterm.name)::text = 'alpha_beta_motif'::text)) OR ((cvterm.name)::text = 'peptide_coil'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop_five'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop_six'::text)) OR ((cvterm.name)::text = 'antiparallel_beta_strand'::text)) OR ((cvterm.name)::text = 'parallel_beta_strand'::text)) OR ((cvterm.name)::text = 'left_handed_peptide_helix'::text)) OR ((cvterm.name)::text = 'right_handed_peptide_helix'::text)) OR ((cvterm.name)::text = 'alpha_helix'::text)) OR ((cvterm.name)::text = 'pi_helix'::text)) OR ((cvterm.name)::text = 'three_ten_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_left_right_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_right_left_motif'::text)) OR ((cvterm.name)::text = 'schellmann_loop_seven'::text)) OR ((cvterm.name)::text = 'schellmann_loop_six'::text)) OR ((cvterm.name)::text = 'asx_turn'::text)) OR ((cvterm.name)::text = 'beta_turn'::text)) OR ((cvterm.name)::text = 'gamma_turn'::text)) OR ((cvterm.name)::text = 'serine_threonine_turn'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six'::text)) OR ((cvterm.name)::text = 'beta_turn_type_eight'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_b'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_one'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'gamma_turn_classic'::text)) OR ((cvterm.name)::text = 'gamma_turn_inverse'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'polypeptide_secondary_structure'::text));
  31201. --
  31202. -- Name: polypeptide_sequence_variant; Type: VIEW; Schema: so; Owner: -
  31203. --
  31204. CREATE VIEW polypeptide_sequence_variant AS
  31205. SELECT feature.feature_id AS polypeptide_sequence_variant_id,
  31206. feature.feature_id,
  31207. feature.dbxref_id,
  31208. feature.organism_id,
  31209. feature.name,
  31210. feature.uniquename,
  31211. feature.residues,
  31212. feature.seqlen,
  31213. feature.md5checksum,
  31214. feature.type_id,
  31215. feature.is_analysis,
  31216. feature.is_obsolete,
  31217. feature.timeaccessioned,
  31218. feature.timelastmodified
  31219. FROM (feature
  31220. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31221. WHERE ((((((((((((((((cvterm.name)::text = 'amino_acid_deletion'::text) OR ((cvterm.name)::text = 'amino_acid_insertion'::text)) OR ((cvterm.name)::text = 'amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide'::text)) OR ((cvterm.name)::text = 'polypeptide_fusion'::text)) OR ((cvterm.name)::text = 'polypeptide_truncation'::text)) OR ((cvterm.name)::text = 'conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'non_conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'polypeptide_sequence_variant'::text));
  31222. --
  31223. -- Name: polypeptide_sequencing_information; Type: VIEW; Schema: so; Owner: -
  31224. --
  31225. CREATE VIEW polypeptide_sequencing_information AS
  31226. SELECT feature.feature_id AS polypeptide_sequencing_information_id,
  31227. feature.feature_id,
  31228. feature.dbxref_id,
  31229. feature.organism_id,
  31230. feature.name,
  31231. feature.uniquename,
  31232. feature.residues,
  31233. feature.seqlen,
  31234. feature.md5checksum,
  31235. feature.type_id,
  31236. feature.is_analysis,
  31237. feature.is_obsolete,
  31238. feature.timeaccessioned,
  31239. feature.timelastmodified
  31240. FROM (feature
  31241. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31242. WHERE (((((((cvterm.name)::text = 'non_adjacent_residues'::text) OR ((cvterm.name)::text = 'non_terminal_residue'::text)) OR ((cvterm.name)::text = 'sequence_conflict'::text)) OR ((cvterm.name)::text = 'sequence_uncertainty'::text)) OR ((cvterm.name)::text = 'contig_collection'::text)) OR ((cvterm.name)::text = 'polypeptide_sequencing_information'::text));
  31243. --
  31244. -- Name: polypeptide_structural_motif; Type: VIEW; Schema: so; Owner: -
  31245. --
  31246. CREATE VIEW polypeptide_structural_motif AS
  31247. SELECT feature.feature_id AS polypeptide_structural_motif_id,
  31248. feature.feature_id,
  31249. feature.dbxref_id,
  31250. feature.organism_id,
  31251. feature.name,
  31252. feature.uniquename,
  31253. feature.residues,
  31254. feature.seqlen,
  31255. feature.md5checksum,
  31256. feature.type_id,
  31257. feature.is_analysis,
  31258. feature.is_obsolete,
  31259. feature.timeaccessioned,
  31260. feature.timelastmodified
  31261. FROM (feature
  31262. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31263. WHERE ((((cvterm.name)::text = 'coiled_coil'::text) OR ((cvterm.name)::text = 'helix_turn_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_structural_motif'::text));
  31264. --
  31265. -- Name: polypeptide_structural_region; Type: VIEW; Schema: so; Owner: -
  31266. --
  31267. CREATE VIEW polypeptide_structural_region AS
  31268. SELECT feature.feature_id AS polypeptide_structural_region_id,
  31269. feature.feature_id,
  31270. feature.dbxref_id,
  31271. feature.organism_id,
  31272. feature.name,
  31273. feature.uniquename,
  31274. feature.residues,
  31275. feature.seqlen,
  31276. feature.md5checksum,
  31277. feature.type_id,
  31278. feature.is_analysis,
  31279. feature.is_obsolete,
  31280. feature.timeaccessioned,
  31281. feature.timelastmodified
  31282. FROM (feature
  31283. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31284. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'polypeptide_domain'::text) OR ((cvterm.name)::text = 'membrane_structure'::text)) OR ((cvterm.name)::text = 'extramembrane_polypeptide_region'::text)) OR ((cvterm.name)::text = 'intramembrane_polypeptide_region'::text)) OR ((cvterm.name)::text = 'polypeptide_secondary_structure'::text)) OR ((cvterm.name)::text = 'polypeptide_structural_motif'::text)) OR ((cvterm.name)::text = 'intrinsically_unstructured_polypeptide_region'::text)) OR ((cvterm.name)::text = 'cytoplasmic_polypeptide_region'::text)) OR ((cvterm.name)::text = 'non_cytoplasmic_polypeptide_region'::text)) OR ((cvterm.name)::text = 'membrane_peptide_loop'::text)) OR ((cvterm.name)::text = 'transmembrane_polypeptide_region'::text)) OR ((cvterm.name)::text = 'asx_motif'::text)) OR ((cvterm.name)::text = 'beta_bulge'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop'::text)) OR ((cvterm.name)::text = 'beta_strand'::text)) OR ((cvterm.name)::text = 'peptide_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_motif'::text)) OR ((cvterm.name)::text = 'schellmann_loop'::text)) OR ((cvterm.name)::text = 'serine_threonine_motif'::text)) OR ((cvterm.name)::text = 'serine_threonine_staple_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_turn_motif'::text)) OR ((cvterm.name)::text = 'catmat_left_handed_three'::text)) OR ((cvterm.name)::text = 'catmat_left_handed_four'::text)) OR ((cvterm.name)::text = 'catmat_right_handed_three'::text)) OR ((cvterm.name)::text = 'catmat_right_handed_four'::text)) OR ((cvterm.name)::text = 'alpha_beta_motif'::text)) OR ((cvterm.name)::text = 'peptide_coil'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop_five'::text)) OR ((cvterm.name)::text = 'beta_bulge_loop_six'::text)) OR ((cvterm.name)::text = 'antiparallel_beta_strand'::text)) OR ((cvterm.name)::text = 'parallel_beta_strand'::text)) OR ((cvterm.name)::text = 'left_handed_peptide_helix'::text)) OR ((cvterm.name)::text = 'right_handed_peptide_helix'::text)) OR ((cvterm.name)::text = 'alpha_helix'::text)) OR ((cvterm.name)::text = 'pi_helix'::text)) OR ((cvterm.name)::text = 'three_ten_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_left_right_motif'::text)) OR ((cvterm.name)::text = 'polypeptide_nest_right_left_motif'::text)) OR ((cvterm.name)::text = 'schellmann_loop_seven'::text)) OR ((cvterm.name)::text = 'schellmann_loop_six'::text)) OR ((cvterm.name)::text = 'asx_turn'::text)) OR ((cvterm.name)::text = 'beta_turn'::text)) OR ((cvterm.name)::text = 'gamma_turn'::text)) OR ((cvterm.name)::text = 'serine_threonine_turn'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six'::text)) OR ((cvterm.name)::text = 'beta_turn_type_eight'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_b'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_one'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'gamma_turn_classic'::text)) OR ((cvterm.name)::text = 'gamma_turn_inverse'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'coiled_coil'::text)) OR ((cvterm.name)::text = 'helix_turn_helix'::text)) OR ((cvterm.name)::text = 'polypeptide_structural_region'::text));
  31285. --
  31286. -- Name: polypeptide_truncation; Type: VIEW; Schema: so; Owner: -
  31287. --
  31288. CREATE VIEW polypeptide_truncation AS
  31289. SELECT feature.feature_id AS polypeptide_truncation_id,
  31290. feature.feature_id,
  31291. feature.dbxref_id,
  31292. feature.organism_id,
  31293. feature.name,
  31294. feature.uniquename,
  31295. feature.residues,
  31296. feature.seqlen,
  31297. feature.md5checksum,
  31298. feature.type_id,
  31299. feature.is_analysis,
  31300. feature.is_obsolete,
  31301. feature.timeaccessioned,
  31302. feature.timelastmodified
  31303. FROM (feature
  31304. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31305. WHERE ((cvterm.name)::text = 'polypeptide_truncation'::text);
  31306. --
  31307. -- Name: polypeptide_tungsten_ion_contact_site; Type: VIEW; Schema: so; Owner: -
  31308. --
  31309. CREATE VIEW polypeptide_tungsten_ion_contact_site AS
  31310. SELECT feature.feature_id AS polypeptide_tungsten_ion_contact_site_id,
  31311. feature.feature_id,
  31312. feature.dbxref_id,
  31313. feature.organism_id,
  31314. feature.name,
  31315. feature.uniquename,
  31316. feature.residues,
  31317. feature.seqlen,
  31318. feature.md5checksum,
  31319. feature.type_id,
  31320. feature.is_analysis,
  31321. feature.is_obsolete,
  31322. feature.timeaccessioned,
  31323. feature.timelastmodified
  31324. FROM (feature
  31325. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31326. WHERE ((cvterm.name)::text = 'polypeptide_tungsten_ion_contact_site'::text);
  31327. --
  31328. -- Name: polypeptide_turn_motif; Type: VIEW; Schema: so; Owner: -
  31329. --
  31330. CREATE VIEW polypeptide_turn_motif AS
  31331. SELECT feature.feature_id AS polypeptide_turn_motif_id,
  31332. feature.feature_id,
  31333. feature.dbxref_id,
  31334. feature.organism_id,
  31335. feature.name,
  31336. feature.uniquename,
  31337. feature.residues,
  31338. feature.seqlen,
  31339. feature.md5checksum,
  31340. feature.type_id,
  31341. feature.is_analysis,
  31342. feature.is_obsolete,
  31343. feature.timeaccessioned,
  31344. feature.timelastmodified
  31345. FROM (feature
  31346. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31347. WHERE ((((((((((((((((((((((((((cvterm.name)::text = 'asx_turn'::text) OR ((cvterm.name)::text = 'beta_turn'::text)) OR ((cvterm.name)::text = 'gamma_turn'::text)) OR ((cvterm.name)::text = 'serine_threonine_turn'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'asx_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'asx_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'beta_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six'::text)) OR ((cvterm.name)::text = 'beta_turn_type_eight'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_b'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_one'::text)) OR ((cvterm.name)::text = 'beta_turn_type_six_a_two'::text)) OR ((cvterm.name)::text = 'gamma_turn_classic'::text)) OR ((cvterm.name)::text = 'gamma_turn_inverse'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'polypeptide_turn_motif'::text));
  31348. --
  31349. -- Name: polypeptide_variation_site; Type: VIEW; Schema: so; Owner: -
  31350. --
  31351. CREATE VIEW polypeptide_variation_site AS
  31352. SELECT feature.feature_id AS polypeptide_variation_site_id,
  31353. feature.feature_id,
  31354. feature.dbxref_id,
  31355. feature.organism_id,
  31356. feature.name,
  31357. feature.uniquename,
  31358. feature.residues,
  31359. feature.seqlen,
  31360. feature.md5checksum,
  31361. feature.type_id,
  31362. feature.is_analysis,
  31363. feature.is_obsolete,
  31364. feature.timeaccessioned,
  31365. feature.timelastmodified
  31366. FROM (feature
  31367. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31368. WHERE (((((cvterm.name)::text = 'natural_variant_site'::text) OR ((cvterm.name)::text = 'mutated_variant_site'::text)) OR ((cvterm.name)::text = 'alternate_sequence_site'::text)) OR ((cvterm.name)::text = 'polypeptide_variation_site'::text));
  31369. --
  31370. -- Name: polypeptide_zinc_ion_contact_site; Type: VIEW; Schema: so; Owner: -
  31371. --
  31372. CREATE VIEW polypeptide_zinc_ion_contact_site AS
  31373. SELECT feature.feature_id AS polypeptide_zinc_ion_contact_site_id,
  31374. feature.feature_id,
  31375. feature.dbxref_id,
  31376. feature.organism_id,
  31377. feature.name,
  31378. feature.uniquename,
  31379. feature.residues,
  31380. feature.seqlen,
  31381. feature.md5checksum,
  31382. feature.type_id,
  31383. feature.is_analysis,
  31384. feature.is_obsolete,
  31385. feature.timeaccessioned,
  31386. feature.timelastmodified
  31387. FROM (feature
  31388. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31389. WHERE ((cvterm.name)::text = 'polypeptide_zinc_ion_contact_site'::text);
  31390. --
  31391. -- Name: polyploid; Type: VIEW; Schema: so; Owner: -
  31392. --
  31393. CREATE VIEW polyploid AS
  31394. SELECT feature.feature_id AS polyploid_id,
  31395. feature.feature_id,
  31396. feature.dbxref_id,
  31397. feature.organism_id,
  31398. feature.name,
  31399. feature.uniquename,
  31400. feature.residues,
  31401. feature.seqlen,
  31402. feature.md5checksum,
  31403. feature.type_id,
  31404. feature.is_analysis,
  31405. feature.is_obsolete,
  31406. feature.timeaccessioned,
  31407. feature.timelastmodified
  31408. FROM (feature
  31409. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31410. WHERE ((((cvterm.name)::text = 'autopolyploid'::text) OR ((cvterm.name)::text = 'allopolyploid'::text)) OR ((cvterm.name)::text = 'polyploid'::text));
  31411. --
  31412. -- Name: polypyrimidine_tract; Type: VIEW; Schema: so; Owner: -
  31413. --
  31414. CREATE VIEW polypyrimidine_tract AS
  31415. SELECT feature.feature_id AS polypyrimidine_tract_id,
  31416. feature.feature_id,
  31417. feature.dbxref_id,
  31418. feature.organism_id,
  31419. feature.name,
  31420. feature.uniquename,
  31421. feature.residues,
  31422. feature.seqlen,
  31423. feature.md5checksum,
  31424. feature.type_id,
  31425. feature.is_analysis,
  31426. feature.is_obsolete,
  31427. feature.timeaccessioned,
  31428. feature.timelastmodified
  31429. FROM (feature
  31430. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31431. WHERE ((cvterm.name)::text = 'polypyrimidine_tract'::text);
  31432. --
  31433. -- Name: population_specific_variant; Type: VIEW; Schema: so; Owner: -
  31434. --
  31435. CREATE VIEW population_specific_variant AS
  31436. SELECT feature.feature_id AS population_specific_variant_id,
  31437. feature.feature_id,
  31438. feature.dbxref_id,
  31439. feature.organism_id,
  31440. feature.name,
  31441. feature.uniquename,
  31442. feature.residues,
  31443. feature.seqlen,
  31444. feature.md5checksum,
  31445. feature.type_id,
  31446. feature.is_analysis,
  31447. feature.is_obsolete,
  31448. feature.timeaccessioned,
  31449. feature.timelastmodified
  31450. FROM (feature
  31451. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31452. WHERE ((cvterm.name)::text = 'population_specific_variant'::text);
  31453. --
  31454. -- Name: positive_sense_ssrna_viral_sequence; Type: VIEW; Schema: so; Owner: -
  31455. --
  31456. CREATE VIEW positive_sense_ssrna_viral_sequence AS
  31457. SELECT feature.feature_id AS positive_sense_ssrna_viral_sequence_id,
  31458. feature.feature_id,
  31459. feature.dbxref_id,
  31460. feature.organism_id,
  31461. feature.name,
  31462. feature.uniquename,
  31463. feature.residues,
  31464. feature.seqlen,
  31465. feature.md5checksum,
  31466. feature.type_id,
  31467. feature.is_analysis,
  31468. feature.is_obsolete,
  31469. feature.timeaccessioned,
  31470. feature.timelastmodified
  31471. FROM (feature
  31472. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31473. WHERE ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text);
  31474. --
  31475. -- Name: positively_autoregulated; Type: VIEW; Schema: so; Owner: -
  31476. --
  31477. CREATE VIEW positively_autoregulated AS
  31478. SELECT feature.feature_id AS positively_autoregulated_id,
  31479. feature.feature_id,
  31480. feature.dbxref_id,
  31481. feature.organism_id,
  31482. feature.name,
  31483. feature.uniquename,
  31484. feature.residues,
  31485. feature.seqlen,
  31486. feature.md5checksum,
  31487. feature.type_id,
  31488. feature.is_analysis,
  31489. feature.is_obsolete,
  31490. feature.timeaccessioned,
  31491. feature.timelastmodified
  31492. FROM (feature
  31493. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31494. WHERE ((cvterm.name)::text = 'positively_autoregulated'::text);
  31495. --
  31496. -- Name: positively_autoregulated_gene; Type: VIEW; Schema: so; Owner: -
  31497. --
  31498. CREATE VIEW positively_autoregulated_gene AS
  31499. SELECT feature.feature_id AS positively_autoregulated_gene_id,
  31500. feature.feature_id,
  31501. feature.dbxref_id,
  31502. feature.organism_id,
  31503. feature.name,
  31504. feature.uniquename,
  31505. feature.residues,
  31506. feature.seqlen,
  31507. feature.md5checksum,
  31508. feature.type_id,
  31509. feature.is_analysis,
  31510. feature.is_obsolete,
  31511. feature.timeaccessioned,
  31512. feature.timelastmodified
  31513. FROM (feature
  31514. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31515. WHERE ((cvterm.name)::text = 'positively_autoregulated_gene'::text);
  31516. --
  31517. -- Name: possible_assembly_error; Type: VIEW; Schema: so; Owner: -
  31518. --
  31519. CREATE VIEW possible_assembly_error AS
  31520. SELECT feature.feature_id AS possible_assembly_error_id,
  31521. feature.feature_id,
  31522. feature.dbxref_id,
  31523. feature.organism_id,
  31524. feature.name,
  31525. feature.uniquename,
  31526. feature.residues,
  31527. feature.seqlen,
  31528. feature.md5checksum,
  31529. feature.type_id,
  31530. feature.is_analysis,
  31531. feature.is_obsolete,
  31532. feature.timeaccessioned,
  31533. feature.timelastmodified
  31534. FROM (feature
  31535. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31536. WHERE ((cvterm.name)::text = 'possible_assembly_error'::text);
  31537. --
  31538. -- Name: possible_base_call_error; Type: VIEW; Schema: so; Owner: -
  31539. --
  31540. CREATE VIEW possible_base_call_error AS
  31541. SELECT feature.feature_id AS possible_base_call_error_id,
  31542. feature.feature_id,
  31543. feature.dbxref_id,
  31544. feature.organism_id,
  31545. feature.name,
  31546. feature.uniquename,
  31547. feature.residues,
  31548. feature.seqlen,
  31549. feature.md5checksum,
  31550. feature.type_id,
  31551. feature.is_analysis,
  31552. feature.is_obsolete,
  31553. feature.timeaccessioned,
  31554. feature.timelastmodified
  31555. FROM (feature
  31556. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31557. WHERE ((cvterm.name)::text = 'possible_base_call_error'::text);
  31558. --
  31559. -- Name: post_translationally_modified_region; Type: VIEW; Schema: so; Owner: -
  31560. --
  31561. CREATE VIEW post_translationally_modified_region AS
  31562. SELECT feature.feature_id AS post_translationally_modified_region_id,
  31563. feature.feature_id,
  31564. feature.dbxref_id,
  31565. feature.organism_id,
  31566. feature.name,
  31567. feature.uniquename,
  31568. feature.residues,
  31569. feature.seqlen,
  31570. feature.md5checksum,
  31571. feature.type_id,
  31572. feature.is_analysis,
  31573. feature.is_obsolete,
  31574. feature.timeaccessioned,
  31575. feature.timelastmodified
  31576. FROM (feature
  31577. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31578. WHERE (((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'histone_modification'::text) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'post_translationally_modified_region'::text));
  31579. --
  31580. -- Name: post_translationally_regulated; Type: VIEW; Schema: so; Owner: -
  31581. --
  31582. CREATE VIEW post_translationally_regulated AS
  31583. SELECT feature.feature_id AS post_translationally_regulated_id,
  31584. feature.feature_id,
  31585. feature.dbxref_id,
  31586. feature.organism_id,
  31587. feature.name,
  31588. feature.uniquename,
  31589. feature.residues,
  31590. feature.seqlen,
  31591. feature.md5checksum,
  31592. feature.type_id,
  31593. feature.is_analysis,
  31594. feature.is_obsolete,
  31595. feature.timeaccessioned,
  31596. feature.timelastmodified
  31597. FROM (feature
  31598. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31599. WHERE ((((cvterm.name)::text = 'post_translationally_regulated_by_protein_stability'::text) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_modification'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated'::text));
  31600. --
  31601. -- Name: post_translationally_regulated_by_protein_modification; Type: VIEW; Schema: so; Owner: -
  31602. --
  31603. CREATE VIEW post_translationally_regulated_by_protein_modification AS
  31604. SELECT feature.feature_id AS post_translationally_regulated_by_protein_modification_id,
  31605. feature.feature_id,
  31606. feature.dbxref_id,
  31607. feature.organism_id,
  31608. feature.name,
  31609. feature.uniquename,
  31610. feature.residues,
  31611. feature.seqlen,
  31612. feature.md5checksum,
  31613. feature.type_id,
  31614. feature.is_analysis,
  31615. feature.is_obsolete,
  31616. feature.timeaccessioned,
  31617. feature.timelastmodified
  31618. FROM (feature
  31619. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31620. WHERE ((cvterm.name)::text = 'post_translationally_regulated_by_protein_modification'::text);
  31621. --
  31622. -- Name: post_translationally_regulated_by_protein_stability; Type: VIEW; Schema: so; Owner: -
  31623. --
  31624. CREATE VIEW post_translationally_regulated_by_protein_stability AS
  31625. SELECT feature.feature_id AS post_translationally_regulated_by_protein_stability_id,
  31626. feature.feature_id,
  31627. feature.dbxref_id,
  31628. feature.organism_id,
  31629. feature.name,
  31630. feature.uniquename,
  31631. feature.residues,
  31632. feature.seqlen,
  31633. feature.md5checksum,
  31634. feature.type_id,
  31635. feature.is_analysis,
  31636. feature.is_obsolete,
  31637. feature.timeaccessioned,
  31638. feature.timelastmodified
  31639. FROM (feature
  31640. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31641. WHERE ((cvterm.name)::text = 'post_translationally_regulated_by_protein_stability'::text);
  31642. --
  31643. -- Name: post_translationally_regulated_gene; Type: VIEW; Schema: so; Owner: -
  31644. --
  31645. CREATE VIEW post_translationally_regulated_gene AS
  31646. SELECT feature.feature_id AS post_translationally_regulated_gene_id,
  31647. feature.feature_id,
  31648. feature.dbxref_id,
  31649. feature.organism_id,
  31650. feature.name,
  31651. feature.uniquename,
  31652. feature.residues,
  31653. feature.seqlen,
  31654. feature.md5checksum,
  31655. feature.type_id,
  31656. feature.is_analysis,
  31657. feature.is_obsolete,
  31658. feature.timeaccessioned,
  31659. feature.timelastmodified
  31660. FROM (feature
  31661. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31662. WHERE ((cvterm.name)::text = 'post_translationally_regulated_gene'::text);
  31663. --
  31664. -- Name: pre_edited_mrna; Type: VIEW; Schema: so; Owner: -
  31665. --
  31666. CREATE VIEW pre_edited_mrna AS
  31667. SELECT feature.feature_id AS pre_edited_mrna_id,
  31668. feature.feature_id,
  31669. feature.dbxref_id,
  31670. feature.organism_id,
  31671. feature.name,
  31672. feature.uniquename,
  31673. feature.residues,
  31674. feature.seqlen,
  31675. feature.md5checksum,
  31676. feature.type_id,
  31677. feature.is_analysis,
  31678. feature.is_obsolete,
  31679. feature.timeaccessioned,
  31680. feature.timelastmodified
  31681. FROM (feature
  31682. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31683. WHERE ((cvterm.name)::text = 'pre_edited_mRNA'::text);
  31684. --
  31685. -- Name: pre_edited_region; Type: VIEW; Schema: so; Owner: -
  31686. --
  31687. CREATE VIEW pre_edited_region AS
  31688. SELECT feature.feature_id AS pre_edited_region_id,
  31689. feature.feature_id,
  31690. feature.dbxref_id,
  31691. feature.organism_id,
  31692. feature.name,
  31693. feature.uniquename,
  31694. feature.residues,
  31695. feature.seqlen,
  31696. feature.md5checksum,
  31697. feature.type_id,
  31698. feature.is_analysis,
  31699. feature.is_obsolete,
  31700. feature.timeaccessioned,
  31701. feature.timelastmodified
  31702. FROM (feature
  31703. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31704. WHERE ((cvterm.name)::text = 'pre_edited_region'::text);
  31705. --
  31706. -- Name: pre_mirna; Type: VIEW; Schema: so; Owner: -
  31707. --
  31708. CREATE VIEW pre_mirna AS
  31709. SELECT feature.feature_id AS pre_mirna_id,
  31710. feature.feature_id,
  31711. feature.dbxref_id,
  31712. feature.organism_id,
  31713. feature.name,
  31714. feature.uniquename,
  31715. feature.residues,
  31716. feature.seqlen,
  31717. feature.md5checksum,
  31718. feature.type_id,
  31719. feature.is_analysis,
  31720. feature.is_obsolete,
  31721. feature.timeaccessioned,
  31722. feature.timelastmodified
  31723. FROM (feature
  31724. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31725. WHERE ((cvterm.name)::text = 'pre_miRNA'::text);
  31726. --
  31727. -- Name: predicted; Type: VIEW; Schema: so; Owner: -
  31728. --
  31729. CREATE VIEW predicted AS
  31730. SELECT feature.feature_id AS predicted_id,
  31731. feature.feature_id,
  31732. feature.dbxref_id,
  31733. feature.organism_id,
  31734. feature.name,
  31735. feature.uniquename,
  31736. feature.residues,
  31737. feature.seqlen,
  31738. feature.md5checksum,
  31739. feature.type_id,
  31740. feature.is_analysis,
  31741. feature.is_obsolete,
  31742. feature.timeaccessioned,
  31743. feature.timelastmodified
  31744. FROM (feature
  31745. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31746. WHERE (((((((cvterm.name)::text = 'supported_by_sequence_similarity'::text) OR ((cvterm.name)::text = 'orphan'::text)) OR ((cvterm.name)::text = 'predicted_by_ab_initio_computation'::text)) OR ((cvterm.name)::text = 'supported_by_domain_match'::text)) OR ((cvterm.name)::text = 'supported_by_EST_or_cDNA'::text)) OR ((cvterm.name)::text = 'predicted'::text));
  31747. --
  31748. -- Name: predicted_by_ab_initio_computation; Type: VIEW; Schema: so; Owner: -
  31749. --
  31750. CREATE VIEW predicted_by_ab_initio_computation AS
  31751. SELECT feature.feature_id AS predicted_by_ab_initio_computation_id,
  31752. feature.feature_id,
  31753. feature.dbxref_id,
  31754. feature.organism_id,
  31755. feature.name,
  31756. feature.uniquename,
  31757. feature.residues,
  31758. feature.seqlen,
  31759. feature.md5checksum,
  31760. feature.type_id,
  31761. feature.is_analysis,
  31762. feature.is_obsolete,
  31763. feature.timeaccessioned,
  31764. feature.timelastmodified
  31765. FROM (feature
  31766. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31767. WHERE ((cvterm.name)::text = 'predicted_by_ab_initio_computation'::text);
  31768. --
  31769. -- Name: predicted_gene; Type: VIEW; Schema: so; Owner: -
  31770. --
  31771. CREATE VIEW predicted_gene AS
  31772. SELECT feature.feature_id AS predicted_gene_id,
  31773. feature.feature_id,
  31774. feature.dbxref_id,
  31775. feature.organism_id,
  31776. feature.name,
  31777. feature.uniquename,
  31778. feature.residues,
  31779. feature.seqlen,
  31780. feature.md5checksum,
  31781. feature.type_id,
  31782. feature.is_analysis,
  31783. feature.is_obsolete,
  31784. feature.timeaccessioned,
  31785. feature.timelastmodified
  31786. FROM (feature
  31787. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31788. WHERE ((cvterm.name)::text = 'predicted_gene'::text);
  31789. --
  31790. -- Name: primary_transcript; Type: VIEW; Schema: so; Owner: -
  31791. --
  31792. CREATE VIEW primary_transcript AS
  31793. SELECT feature.feature_id AS primary_transcript_id,
  31794. feature.feature_id,
  31795. feature.dbxref_id,
  31796. feature.organism_id,
  31797. feature.name,
  31798. feature.uniquename,
  31799. feature.residues,
  31800. feature.seqlen,
  31801. feature.md5checksum,
  31802. feature.type_id,
  31803. feature.is_analysis,
  31804. feature.is_obsolete,
  31805. feature.timeaccessioned,
  31806. feature.timelastmodified
  31807. FROM (feature
  31808. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31809. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'protein_coding_primary_transcript'::text) OR ((cvterm.name)::text = 'nc_primary_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'monocistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'mini_exon_donor_RNA'::text)) OR ((cvterm.name)::text = 'antisense_primary_transcript'::text)) OR ((cvterm.name)::text = 'capped_primary_transcript'::text)) OR ((cvterm.name)::text = 'pre_edited_mRNA'::text)) OR ((cvterm.name)::text = 'scRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tmRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'SRP_RNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'miRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tasiRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_small_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_large_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'alanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'arginine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'asparagine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'aspartic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'cysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glycine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'histidine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'isoleucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'leucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'lysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methionine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'phenylalanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'proline_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'serine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'threonine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tryptophan_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tyrosine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'valine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'pyrrolysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'selenocysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'U14_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'stRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'primary_transcript'::text));
  31810. --
  31811. -- Name: primary_transcript_region; Type: VIEW; Schema: so; Owner: -
  31812. --
  31813. CREATE VIEW primary_transcript_region AS
  31814. SELECT feature.feature_id AS primary_transcript_region_id,
  31815. feature.feature_id,
  31816. feature.dbxref_id,
  31817. feature.organism_id,
  31818. feature.name,
  31819. feature.uniquename,
  31820. feature.residues,
  31821. feature.seqlen,
  31822. feature.md5checksum,
  31823. feature.type_id,
  31824. feature.is_analysis,
  31825. feature.is_obsolete,
  31826. feature.timeaccessioned,
  31827. feature.timelastmodified
  31828. FROM (feature
  31829. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31830. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'splice_site'::text) OR ((cvterm.name)::text = 'intron'::text)) OR ((cvterm.name)::text = 'clip'::text)) OR ((cvterm.name)::text = 'TSS'::text)) OR ((cvterm.name)::text = 'transcription_end_site'::text)) OR ((cvterm.name)::text = 'spliced_leader_RNA'::text)) OR ((cvterm.name)::text = 'rRNA_primary_transcript_region'::text)) OR ((cvterm.name)::text = 'spliceosomal_intron_region'::text)) OR ((cvterm.name)::text = 'intron_domain'::text)) OR ((cvterm.name)::text = 'miRNA_primary_transcript_region'::text)) OR ((cvterm.name)::text = 'outron'::text)) OR ((cvterm.name)::text = 'cis_splice_site'::text)) OR ((cvterm.name)::text = 'trans_splice_site'::text)) OR ((cvterm.name)::text = 'cryptic_splice_site'::text)) OR ((cvterm.name)::text = 'five_prime_cis_splice_site'::text)) OR ((cvterm.name)::text = 'three_prime_cis_splice_site'::text)) OR ((cvterm.name)::text = 'recursive_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'trans_splice_acceptor_site'::text)) OR ((cvterm.name)::text = 'trans_splice_donor_site'::text)) OR ((cvterm.name)::text = 'SL1_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL2_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL3_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL4_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL5_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL6_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL7_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL8_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL9_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL10_accceptor_site'::text)) OR ((cvterm.name)::text = 'SL11_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL12_acceptor_site'::text)) OR ((cvterm.name)::text = 'five_prime_intron'::text)) OR ((cvterm.name)::text = 'interior_intron'::text)) OR ((cvterm.name)::text = 'three_prime_intron'::text)) OR ((cvterm.name)::text = 'twintron'::text)) OR ((cvterm.name)::text = 'UTR_intron'::text)) OR ((cvterm.name)::text = 'autocatalytically_spliced_intron'::text)) OR ((cvterm.name)::text = 'spliceosomal_intron'::text)) OR ((cvterm.name)::text = 'mobile_intron'::text)) OR ((cvterm.name)::text = 'endonuclease_spliced_intron'::text)) OR ((cvterm.name)::text = 'five_prime_UTR_intron'::text)) OR ((cvterm.name)::text = 'three_prime_UTR_intron'::text)) OR ((cvterm.name)::text = 'group_I_intron'::text)) OR ((cvterm.name)::text = 'group_II_intron'::text)) OR ((cvterm.name)::text = 'group_III_intron'::text)) OR ((cvterm.name)::text = 'group_IIA_intron'::text)) OR ((cvterm.name)::text = 'group_IIB_intron'::text)) OR ((cvterm.name)::text = 'U2_intron'::text)) OR ((cvterm.name)::text = 'U12_intron'::text)) OR ((cvterm.name)::text = 'archaeal_intron'::text)) OR ((cvterm.name)::text = 'tRNA_intron'::text)) OR ((cvterm.name)::text = 'five_prime_clip'::text)) OR ((cvterm.name)::text = 'three_prime_clip'::text)) OR ((cvterm.name)::text = 'major_TSS'::text)) OR ((cvterm.name)::text = 'minor_TSS'::text)) OR ((cvterm.name)::text = 'transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'internal_transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'external_transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'intronic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'branch_site'::text)) OR ((cvterm.name)::text = 'polypyrimidine_tract'::text)) OR ((cvterm.name)::text = 'internal_guide_sequence'::text)) OR ((cvterm.name)::text = 'mirtron'::text)) OR ((cvterm.name)::text = 'pre_miRNA'::text)) OR ((cvterm.name)::text = 'miRNA_stem'::text)) OR ((cvterm.name)::text = 'miRNA_loop'::text)) OR ((cvterm.name)::text = 'miRNA_antiguide'::text)) OR ((cvterm.name)::text = 'primary_transcript_region'::text));
  31831. --
  31832. -- Name: primer; Type: VIEW; Schema: so; Owner: -
  31833. --
  31834. CREATE VIEW primer AS
  31835. SELECT feature.feature_id AS primer_id,
  31836. feature.feature_id,
  31837. feature.dbxref_id,
  31838. feature.organism_id,
  31839. feature.name,
  31840. feature.uniquename,
  31841. feature.residues,
  31842. feature.seqlen,
  31843. feature.md5checksum,
  31844. feature.type_id,
  31845. feature.is_analysis,
  31846. feature.is_obsolete,
  31847. feature.timeaccessioned,
  31848. feature.timelastmodified
  31849. FROM (feature
  31850. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31851. WHERE (((((((cvterm.name)::text = 'sequencing_primer'::text) OR ((cvterm.name)::text = 'forward_primer'::text)) OR ((cvterm.name)::text = 'reverse_primer'::text)) OR ((cvterm.name)::text = 'ASPE_primer'::text)) OR ((cvterm.name)::text = 'dCAPS_primer'::text)) OR ((cvterm.name)::text = 'primer'::text));
  31852. --
  31853. -- Name: primer_binding_site; Type: VIEW; Schema: so; Owner: -
  31854. --
  31855. CREATE VIEW primer_binding_site AS
  31856. SELECT feature.feature_id AS primer_binding_site_id,
  31857. feature.feature_id,
  31858. feature.dbxref_id,
  31859. feature.organism_id,
  31860. feature.name,
  31861. feature.uniquename,
  31862. feature.residues,
  31863. feature.seqlen,
  31864. feature.md5checksum,
  31865. feature.type_id,
  31866. feature.is_analysis,
  31867. feature.is_obsolete,
  31868. feature.timeaccessioned,
  31869. feature.timelastmodified
  31870. FROM (feature
  31871. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31872. WHERE ((cvterm.name)::text = 'primer_binding_site'::text);
  31873. --
  31874. -- Name: primer_match; Type: VIEW; Schema: so; Owner: -
  31875. --
  31876. CREATE VIEW primer_match AS
  31877. SELECT feature.feature_id AS primer_match_id,
  31878. feature.feature_id,
  31879. feature.dbxref_id,
  31880. feature.organism_id,
  31881. feature.name,
  31882. feature.uniquename,
  31883. feature.residues,
  31884. feature.seqlen,
  31885. feature.md5checksum,
  31886. feature.type_id,
  31887. feature.is_analysis,
  31888. feature.is_obsolete,
  31889. feature.timeaccessioned,
  31890. feature.timelastmodified
  31891. FROM (feature
  31892. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31893. WHERE ((cvterm.name)::text = 'primer_match'::text);
  31894. --
  31895. -- Name: probe; Type: VIEW; Schema: so; Owner: -
  31896. --
  31897. CREATE VIEW probe AS
  31898. SELECT feature.feature_id AS probe_id,
  31899. feature.feature_id,
  31900. feature.dbxref_id,
  31901. feature.organism_id,
  31902. feature.name,
  31903. feature.uniquename,
  31904. feature.residues,
  31905. feature.seqlen,
  31906. feature.md5checksum,
  31907. feature.type_id,
  31908. feature.is_analysis,
  31909. feature.is_obsolete,
  31910. feature.timeaccessioned,
  31911. feature.timelastmodified
  31912. FROM (feature
  31913. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31914. WHERE (((cvterm.name)::text = 'microarray_oligo'::text) OR ((cvterm.name)::text = 'probe'::text));
  31915. --
  31916. -- Name: processed_pseudogene; Type: VIEW; Schema: so; Owner: -
  31917. --
  31918. CREATE VIEW processed_pseudogene AS
  31919. SELECT feature.feature_id AS processed_pseudogene_id,
  31920. feature.feature_id,
  31921. feature.dbxref_id,
  31922. feature.organism_id,
  31923. feature.name,
  31924. feature.uniquename,
  31925. feature.residues,
  31926. feature.seqlen,
  31927. feature.md5checksum,
  31928. feature.type_id,
  31929. feature.is_analysis,
  31930. feature.is_obsolete,
  31931. feature.timeaccessioned,
  31932. feature.timelastmodified
  31933. FROM (feature
  31934. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31935. WHERE ((cvterm.name)::text = 'processed_pseudogene'::text);
  31936. --
  31937. -- Name: processed_transcript; Type: VIEW; Schema: so; Owner: -
  31938. --
  31939. CREATE VIEW processed_transcript AS
  31940. SELECT feature.feature_id AS processed_transcript_id,
  31941. feature.feature_id,
  31942. feature.dbxref_id,
  31943. feature.organism_id,
  31944. feature.name,
  31945. feature.uniquename,
  31946. feature.residues,
  31947. feature.seqlen,
  31948. feature.md5checksum,
  31949. feature.type_id,
  31950. feature.is_analysis,
  31951. feature.is_obsolete,
  31952. feature.timeaccessioned,
  31953. feature.timelastmodified
  31954. FROM (feature
  31955. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31956. WHERE ((cvterm.name)::text = 'processed_transcript'::text);
  31957. --
  31958. -- Name: proline; Type: VIEW; Schema: so; Owner: -
  31959. --
  31960. CREATE VIEW proline AS
  31961. SELECT feature.feature_id AS proline_id,
  31962. feature.feature_id,
  31963. feature.dbxref_id,
  31964. feature.organism_id,
  31965. feature.name,
  31966. feature.uniquename,
  31967. feature.residues,
  31968. feature.seqlen,
  31969. feature.md5checksum,
  31970. feature.type_id,
  31971. feature.is_analysis,
  31972. feature.is_obsolete,
  31973. feature.timeaccessioned,
  31974. feature.timelastmodified
  31975. FROM (feature
  31976. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31977. WHERE ((cvterm.name)::text = 'proline'::text);
  31978. --
  31979. -- Name: proline_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  31980. --
  31981. CREATE VIEW proline_trna_primary_transcript AS
  31982. SELECT feature.feature_id AS proline_trna_primary_transcript_id,
  31983. feature.feature_id,
  31984. feature.dbxref_id,
  31985. feature.organism_id,
  31986. feature.name,
  31987. feature.uniquename,
  31988. feature.residues,
  31989. feature.seqlen,
  31990. feature.md5checksum,
  31991. feature.type_id,
  31992. feature.is_analysis,
  31993. feature.is_obsolete,
  31994. feature.timeaccessioned,
  31995. feature.timelastmodified
  31996. FROM (feature
  31997. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  31998. WHERE ((cvterm.name)::text = 'proline_tRNA_primary_transcript'::text);
  31999. --
  32000. -- Name: prolyl_trna; Type: VIEW; Schema: so; Owner: -
  32001. --
  32002. CREATE VIEW prolyl_trna AS
  32003. SELECT feature.feature_id AS prolyl_trna_id,
  32004. feature.feature_id,
  32005. feature.dbxref_id,
  32006. feature.organism_id,
  32007. feature.name,
  32008. feature.uniquename,
  32009. feature.residues,
  32010. feature.seqlen,
  32011. feature.md5checksum,
  32012. feature.type_id,
  32013. feature.is_analysis,
  32014. feature.is_obsolete,
  32015. feature.timeaccessioned,
  32016. feature.timelastmodified
  32017. FROM (feature
  32018. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32019. WHERE ((cvterm.name)::text = 'prolyl_tRNA'::text);
  32020. --
  32021. -- Name: promoter; Type: VIEW; Schema: so; Owner: -
  32022. --
  32023. CREATE VIEW promoter AS
  32024. SELECT feature.feature_id AS promoter_id,
  32025. feature.feature_id,
  32026. feature.dbxref_id,
  32027. feature.organism_id,
  32028. feature.name,
  32029. feature.uniquename,
  32030. feature.residues,
  32031. feature.seqlen,
  32032. feature.md5checksum,
  32033. feature.type_id,
  32034. feature.is_analysis,
  32035. feature.is_obsolete,
  32036. feature.timeaccessioned,
  32037. feature.timelastmodified
  32038. FROM (feature
  32039. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32040. WHERE ((((((((((((((((((cvterm.name)::text = 'bidirectional_promoter'::text) OR ((cvterm.name)::text = 'RNA_polymerase_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_I_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'Phage_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_core_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'promoter'::text));
  32041. --
  32042. -- Name: promoter_element; Type: VIEW; Schema: so; Owner: -
  32043. --
  32044. CREATE VIEW promoter_element AS
  32045. SELECT feature.feature_id AS promoter_element_id,
  32046. feature.feature_id,
  32047. feature.dbxref_id,
  32048. feature.organism_id,
  32049. feature.name,
  32050. feature.uniquename,
  32051. feature.residues,
  32052. feature.seqlen,
  32053. feature.md5checksum,
  32054. feature.type_id,
  32055. feature.is_analysis,
  32056. feature.is_obsolete,
  32057. feature.timeaccessioned,
  32058. feature.timelastmodified
  32059. FROM (feature
  32060. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32061. WHERE ((((((((((((((((((((((((((((((cvterm.name)::text = 'GC_rich_promoter_region'::text) OR ((cvterm.name)::text = 'DMv4_motif'::text)) OR ((cvterm.name)::text = 'DMv5_motif'::text)) OR ((cvterm.name)::text = 'DMv3_motif'::text)) OR ((cvterm.name)::text = 'DMv2_motif'::text)) OR ((cvterm.name)::text = 'DPE1_motif'::text)) OR ((cvterm.name)::text = 'DMv1_motif'::text)) OR ((cvterm.name)::text = 'NDM2_motif'::text)) OR ((cvterm.name)::text = 'NDM3_motif'::text)) OR ((cvterm.name)::text = 'core_promoter_element'::text)) OR ((cvterm.name)::text = 'regulatory_promoter_element'::text)) OR ((cvterm.name)::text = 'INR_motif'::text)) OR ((cvterm.name)::text = 'DPE_motif'::text)) OR ((cvterm.name)::text = 'BREu_motif'::text)) OR ((cvterm.name)::text = 'TATA_box'::text)) OR ((cvterm.name)::text = 'A_box'::text)) OR ((cvterm.name)::text = 'B_box'::text)) OR ((cvterm.name)::text = 'C_box'::text)) OR ((cvterm.name)::text = 'MTE'::text)) OR ((cvterm.name)::text = 'BREd_motif'::text)) OR ((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'proximal_promoter_element'::text)) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'promoter_element'::text));
  32062. --
  32063. -- Name: promoter_targeting_sequence; Type: VIEW; Schema: so; Owner: -
  32064. --
  32065. CREATE VIEW promoter_targeting_sequence AS
  32066. SELECT feature.feature_id AS promoter_targeting_sequence_id,
  32067. feature.feature_id,
  32068. feature.dbxref_id,
  32069. feature.organism_id,
  32070. feature.name,
  32071. feature.uniquename,
  32072. feature.residues,
  32073. feature.seqlen,
  32074. feature.md5checksum,
  32075. feature.type_id,
  32076. feature.is_analysis,
  32077. feature.is_obsolete,
  32078. feature.timeaccessioned,
  32079. feature.timelastmodified
  32080. FROM (feature
  32081. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32082. WHERE ((cvterm.name)::text = 'promoter_targeting_sequence'::text);
  32083. --
  32084. -- Name: promoter_trap_construct; Type: VIEW; Schema: so; Owner: -
  32085. --
  32086. CREATE VIEW promoter_trap_construct AS
  32087. SELECT feature.feature_id AS promoter_trap_construct_id,
  32088. feature.feature_id,
  32089. feature.dbxref_id,
  32090. feature.organism_id,
  32091. feature.name,
  32092. feature.uniquename,
  32093. feature.residues,
  32094. feature.seqlen,
  32095. feature.md5checksum,
  32096. feature.type_id,
  32097. feature.is_analysis,
  32098. feature.is_obsolete,
  32099. feature.timeaccessioned,
  32100. feature.timelastmodified
  32101. FROM (feature
  32102. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32103. WHERE ((cvterm.name)::text = 'promoter_trap_construct'::text);
  32104. --
  32105. -- Name: propeptide; Type: VIEW; Schema: so; Owner: -
  32106. --
  32107. CREATE VIEW propeptide AS
  32108. SELECT feature.feature_id AS propeptide_id,
  32109. feature.feature_id,
  32110. feature.dbxref_id,
  32111. feature.organism_id,
  32112. feature.name,
  32113. feature.uniquename,
  32114. feature.residues,
  32115. feature.seqlen,
  32116. feature.md5checksum,
  32117. feature.type_id,
  32118. feature.is_analysis,
  32119. feature.is_obsolete,
  32120. feature.timeaccessioned,
  32121. feature.timelastmodified
  32122. FROM (feature
  32123. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32124. WHERE ((cvterm.name)::text = 'propeptide'::text);
  32125. --
  32126. -- Name: propeptide_cleavage_site; Type: VIEW; Schema: so; Owner: -
  32127. --
  32128. CREATE VIEW propeptide_cleavage_site AS
  32129. SELECT feature.feature_id AS propeptide_cleavage_site_id,
  32130. feature.feature_id,
  32131. feature.dbxref_id,
  32132. feature.organism_id,
  32133. feature.name,
  32134. feature.uniquename,
  32135. feature.residues,
  32136. feature.seqlen,
  32137. feature.md5checksum,
  32138. feature.type_id,
  32139. feature.is_analysis,
  32140. feature.is_obsolete,
  32141. feature.timeaccessioned,
  32142. feature.timelastmodified
  32143. FROM (feature
  32144. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32145. WHERE ((cvterm.name)::text = 'propeptide_cleavage_site'::text);
  32146. --
  32147. -- Name: prophage; Type: VIEW; Schema: so; Owner: -
  32148. --
  32149. CREATE VIEW prophage AS
  32150. SELECT feature.feature_id AS prophage_id,
  32151. feature.feature_id,
  32152. feature.dbxref_id,
  32153. feature.organism_id,
  32154. feature.name,
  32155. feature.uniquename,
  32156. feature.residues,
  32157. feature.seqlen,
  32158. feature.md5checksum,
  32159. feature.type_id,
  32160. feature.is_analysis,
  32161. feature.is_obsolete,
  32162. feature.timeaccessioned,
  32163. feature.timelastmodified
  32164. FROM (feature
  32165. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32166. WHERE ((cvterm.name)::text = 'prophage'::text);
  32167. --
  32168. -- Name: proplastid_gene; Type: VIEW; Schema: so; Owner: -
  32169. --
  32170. CREATE VIEW proplastid_gene AS
  32171. SELECT feature.feature_id AS proplastid_gene_id,
  32172. feature.feature_id,
  32173. feature.dbxref_id,
  32174. feature.organism_id,
  32175. feature.name,
  32176. feature.uniquename,
  32177. feature.residues,
  32178. feature.seqlen,
  32179. feature.md5checksum,
  32180. feature.type_id,
  32181. feature.is_analysis,
  32182. feature.is_obsolete,
  32183. feature.timeaccessioned,
  32184. feature.timelastmodified
  32185. FROM (feature
  32186. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32187. WHERE ((cvterm.name)::text = 'proplastid_gene'::text);
  32188. --
  32189. -- Name: proplastid_sequence; Type: VIEW; Schema: so; Owner: -
  32190. --
  32191. CREATE VIEW proplastid_sequence AS
  32192. SELECT feature.feature_id AS proplastid_sequence_id,
  32193. feature.feature_id,
  32194. feature.dbxref_id,
  32195. feature.organism_id,
  32196. feature.name,
  32197. feature.uniquename,
  32198. feature.residues,
  32199. feature.seqlen,
  32200. feature.md5checksum,
  32201. feature.type_id,
  32202. feature.is_analysis,
  32203. feature.is_obsolete,
  32204. feature.timeaccessioned,
  32205. feature.timelastmodified
  32206. FROM (feature
  32207. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32208. WHERE ((cvterm.name)::text = 'proplastid_sequence'::text);
  32209. --
  32210. -- Name: protein_binding_site; Type: VIEW; Schema: so; Owner: -
  32211. --
  32212. CREATE VIEW protein_binding_site AS
  32213. SELECT feature.feature_id AS protein_binding_site_id,
  32214. feature.feature_id,
  32215. feature.dbxref_id,
  32216. feature.organism_id,
  32217. feature.name,
  32218. feature.uniquename,
  32219. feature.residues,
  32220. feature.seqlen,
  32221. feature.md5checksum,
  32222. feature.type_id,
  32223. feature.is_analysis,
  32224. feature.is_obsolete,
  32225. feature.timeaccessioned,
  32226. feature.timelastmodified
  32227. FROM (feature
  32228. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32229. WHERE (((((((((((((((cvterm.name)::text = 'protein_protein_contact'::text) OR ((cvterm.name)::text = 'nucleotide_to_protein_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_binding_site'::text)) OR ((cvterm.name)::text = 'TF_binding_site'::text)) OR ((cvterm.name)::text = 'histone_binding_site'::text)) OR ((cvterm.name)::text = 'insulator_binding_site'::text)) OR ((cvterm.name)::text = 'enhancer_binding_site'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_sensitive_site'::text)) OR ((cvterm.name)::text = 'homing_endonuclease_binding_site'::text)) OR ((cvterm.name)::text = 'nuclease_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'group_1_intron_homing_endonuclease_target_region'::text)) OR ((cvterm.name)::text = 'DNAseI_hypersensitive_site'::text)) OR ((cvterm.name)::text = 'protein_binding_site'::text));
  32230. --
  32231. -- Name: protein_coding; Type: VIEW; Schema: so; Owner: -
  32232. --
  32233. CREATE VIEW protein_coding AS
  32234. SELECT feature.feature_id AS protein_coding_id,
  32235. feature.feature_id,
  32236. feature.dbxref_id,
  32237. feature.organism_id,
  32238. feature.name,
  32239. feature.uniquename,
  32240. feature.residues,
  32241. feature.seqlen,
  32242. feature.md5checksum,
  32243. feature.type_id,
  32244. feature.is_analysis,
  32245. feature.is_obsolete,
  32246. feature.timeaccessioned,
  32247. feature.timelastmodified
  32248. FROM (feature
  32249. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32250. WHERE (((cvterm.name)::text = 'intein_containing'::text) OR ((cvterm.name)::text = 'protein_coding'::text));
  32251. --
  32252. -- Name: protein_coding_gene; Type: VIEW; Schema: public; Owner: -
  32253. --
  32254. --
  32255. -- Name: protein_coding_gene; Type: VIEW; Schema: so; Owner: -
  32256. --
  32257. CREATE VIEW protein_coding_gene AS
  32258. SELECT feature.feature_id AS protein_coding_gene_id,
  32259. feature.feature_id,
  32260. feature.dbxref_id,
  32261. feature.organism_id,
  32262. feature.name,
  32263. feature.uniquename,
  32264. feature.residues,
  32265. feature.seqlen,
  32266. feature.md5checksum,
  32267. feature.type_id,
  32268. feature.is_analysis,
  32269. feature.is_obsolete,
  32270. feature.timeaccessioned,
  32271. feature.timelastmodified
  32272. FROM (feature
  32273. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32274. WHERE (((((((((((cvterm.name)::text = 'gene_with_polyadenylated_mRNA'::text) OR ((cvterm.name)::text = 'gene_with_mRNA_with_frameshift'::text)) OR ((cvterm.name)::text = 'gene_with_edited_transcript'::text)) OR ((cvterm.name)::text = 'gene_with_recoded_mRNA'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_read_through'::text)) OR ((cvterm.name)::text = 'gene_with_mRNA_recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'gene_with_transcript_with_translational_frameshift'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'gene_with_stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'protein_coding_gene'::text));
  32275. --
  32276. -- Name: protein_coding_primary_transcript; Type: VIEW; Schema: so; Owner: -
  32277. --
  32278. CREATE VIEW protein_coding_primary_transcript AS
  32279. SELECT feature.feature_id AS protein_coding_primary_transcript_id,
  32280. feature.feature_id,
  32281. feature.dbxref_id,
  32282. feature.organism_id,
  32283. feature.name,
  32284. feature.uniquename,
  32285. feature.residues,
  32286. feature.seqlen,
  32287. feature.md5checksum,
  32288. feature.type_id,
  32289. feature.is_analysis,
  32290. feature.is_obsolete,
  32291. feature.timeaccessioned,
  32292. feature.timelastmodified
  32293. FROM (feature
  32294. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32295. WHERE (((cvterm.name)::text = 'pre_edited_mRNA'::text) OR ((cvterm.name)::text = 'protein_coding_primary_transcript'::text));
  32296. --
  32297. -- Name: protein_match; Type: VIEW; Schema: so; Owner: -
  32298. --
  32299. CREATE VIEW protein_match AS
  32300. SELECT feature.feature_id AS protein_match_id,
  32301. feature.feature_id,
  32302. feature.dbxref_id,
  32303. feature.organism_id,
  32304. feature.name,
  32305. feature.uniquename,
  32306. feature.residues,
  32307. feature.seqlen,
  32308. feature.md5checksum,
  32309. feature.type_id,
  32310. feature.is_analysis,
  32311. feature.is_obsolete,
  32312. feature.timeaccessioned,
  32313. feature.timelastmodified
  32314. FROM (feature
  32315. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32316. WHERE ((cvterm.name)::text = 'protein_match'::text);
  32317. --
  32318. -- Name: protein_protein_contact; Type: VIEW; Schema: so; Owner: -
  32319. --
  32320. CREATE VIEW protein_protein_contact AS
  32321. SELECT feature.feature_id AS protein_protein_contact_id,
  32322. feature.feature_id,
  32323. feature.dbxref_id,
  32324. feature.organism_id,
  32325. feature.name,
  32326. feature.uniquename,
  32327. feature.residues,
  32328. feature.seqlen,
  32329. feature.md5checksum,
  32330. feature.type_id,
  32331. feature.is_analysis,
  32332. feature.is_obsolete,
  32333. feature.timeaccessioned,
  32334. feature.timelastmodified
  32335. FROM (feature
  32336. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32337. WHERE ((cvterm.name)::text = 'protein_protein_contact'::text);
  32338. --
  32339. -- Name: proviral_gene; Type: VIEW; Schema: so; Owner: -
  32340. --
  32341. CREATE VIEW proviral_gene AS
  32342. SELECT feature.feature_id AS proviral_gene_id,
  32343. feature.feature_id,
  32344. feature.dbxref_id,
  32345. feature.organism_id,
  32346. feature.name,
  32347. feature.uniquename,
  32348. feature.residues,
  32349. feature.seqlen,
  32350. feature.md5checksum,
  32351. feature.type_id,
  32352. feature.is_analysis,
  32353. feature.is_obsolete,
  32354. feature.timeaccessioned,
  32355. feature.timelastmodified
  32356. FROM (feature
  32357. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32358. WHERE (((cvterm.name)::text = 'endogenous_retroviral_gene'::text) OR ((cvterm.name)::text = 'proviral_gene'::text));
  32359. --
  32360. -- Name: proviral_location; Type: VIEW; Schema: so; Owner: -
  32361. --
  32362. CREATE VIEW proviral_location AS
  32363. SELECT feature.feature_id AS proviral_location_id,
  32364. feature.feature_id,
  32365. feature.dbxref_id,
  32366. feature.organism_id,
  32367. feature.name,
  32368. feature.uniquename,
  32369. feature.residues,
  32370. feature.seqlen,
  32371. feature.md5checksum,
  32372. feature.type_id,
  32373. feature.is_analysis,
  32374. feature.is_obsolete,
  32375. feature.timeaccessioned,
  32376. feature.timelastmodified
  32377. FROM (feature
  32378. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32379. WHERE (((cvterm.name)::text = 'endogenous_retroviral_sequence'::text) OR ((cvterm.name)::text = 'proviral_location'::text));
  32380. --
  32381. -- Name: proviral_region; Type: VIEW; Schema: so; Owner: -
  32382. --
  32383. CREATE VIEW proviral_region AS
  32384. SELECT feature.feature_id AS proviral_region_id,
  32385. feature.feature_id,
  32386. feature.dbxref_id,
  32387. feature.organism_id,
  32388. feature.name,
  32389. feature.uniquename,
  32390. feature.residues,
  32391. feature.seqlen,
  32392. feature.md5checksum,
  32393. feature.type_id,
  32394. feature.is_analysis,
  32395. feature.is_obsolete,
  32396. feature.timeaccessioned,
  32397. feature.timelastmodified
  32398. FROM (feature
  32399. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32400. WHERE (((cvterm.name)::text = 'prophage'::text) OR ((cvterm.name)::text = 'proviral_region'::text));
  32401. --
  32402. -- Name: proximal_promoter_element; Type: VIEW; Schema: so; Owner: -
  32403. --
  32404. CREATE VIEW proximal_promoter_element AS
  32405. SELECT feature.feature_id AS proximal_promoter_element_id,
  32406. feature.feature_id,
  32407. feature.dbxref_id,
  32408. feature.organism_id,
  32409. feature.name,
  32410. feature.uniquename,
  32411. feature.residues,
  32412. feature.seqlen,
  32413. feature.md5checksum,
  32414. feature.type_id,
  32415. feature.is_analysis,
  32416. feature.is_obsolete,
  32417. feature.timeaccessioned,
  32418. feature.timelastmodified
  32419. FROM (feature
  32420. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32421. WHERE ((cvterm.name)::text = 'proximal_promoter_element'::text);
  32422. --
  32423. -- Name: pse_motif; Type: VIEW; Schema: so; Owner: -
  32424. --
  32425. CREATE VIEW pse_motif AS
  32426. SELECT feature.feature_id AS pse_motif_id,
  32427. feature.feature_id,
  32428. feature.dbxref_id,
  32429. feature.organism_id,
  32430. feature.name,
  32431. feature.uniquename,
  32432. feature.residues,
  32433. feature.seqlen,
  32434. feature.md5checksum,
  32435. feature.type_id,
  32436. feature.is_analysis,
  32437. feature.is_obsolete,
  32438. feature.timeaccessioned,
  32439. feature.timelastmodified
  32440. FROM (feature
  32441. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32442. WHERE ((cvterm.name)::text = 'PSE_motif'::text);
  32443. --
  32444. -- Name: pseudogene; Type: VIEW; Schema: so; Owner: -
  32445. --
  32446. CREATE VIEW pseudogene AS
  32447. SELECT feature.feature_id AS pseudogene_id,
  32448. feature.feature_id,
  32449. feature.dbxref_id,
  32450. feature.organism_id,
  32451. feature.name,
  32452. feature.uniquename,
  32453. feature.residues,
  32454. feature.seqlen,
  32455. feature.md5checksum,
  32456. feature.type_id,
  32457. feature.is_analysis,
  32458. feature.is_obsolete,
  32459. feature.timeaccessioned,
  32460. feature.timelastmodified
  32461. FROM (feature
  32462. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32463. WHERE (((((((((cvterm.name)::text = 'processed_pseudogene'::text) OR ((cvterm.name)::text = 'non_processed_pseudogene'::text)) OR ((cvterm.name)::text = 'pseudogene_by_unequal_crossing_over'::text)) OR ((cvterm.name)::text = 'nuclear_mt_pseudogene'::text)) OR ((cvterm.name)::text = 'cassette_pseudogene'::text)) OR ((cvterm.name)::text = 'duplicated_pseudogene'::text)) OR ((cvterm.name)::text = 'unitary_pseudogene'::text)) OR ((cvterm.name)::text = 'pseudogene'::text));
  32464. --
  32465. -- Name: pseudogene_by_unequal_crossing_over; Type: VIEW; Schema: so; Owner: -
  32466. --
  32467. CREATE VIEW pseudogene_by_unequal_crossing_over AS
  32468. SELECT feature.feature_id AS pseudogene_by_unequal_crossing_over_id,
  32469. feature.feature_id,
  32470. feature.dbxref_id,
  32471. feature.organism_id,
  32472. feature.name,
  32473. feature.uniquename,
  32474. feature.residues,
  32475. feature.seqlen,
  32476. feature.md5checksum,
  32477. feature.type_id,
  32478. feature.is_analysis,
  32479. feature.is_obsolete,
  32480. feature.timeaccessioned,
  32481. feature.timelastmodified
  32482. FROM (feature
  32483. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32484. WHERE ((cvterm.name)::text = 'pseudogene_by_unequal_crossing_over'::text);
  32485. --
  32486. -- Name: pseudogenic_exon; Type: VIEW; Schema: so; Owner: -
  32487. --
  32488. CREATE VIEW pseudogenic_exon AS
  32489. SELECT feature.feature_id AS pseudogenic_exon_id,
  32490. feature.feature_id,
  32491. feature.dbxref_id,
  32492. feature.organism_id,
  32493. feature.name,
  32494. feature.uniquename,
  32495. feature.residues,
  32496. feature.seqlen,
  32497. feature.md5checksum,
  32498. feature.type_id,
  32499. feature.is_analysis,
  32500. feature.is_obsolete,
  32501. feature.timeaccessioned,
  32502. feature.timelastmodified
  32503. FROM (feature
  32504. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32505. WHERE ((cvterm.name)::text = 'pseudogenic_exon'::text);
  32506. --
  32507. -- Name: pseudogenic_gene_segment; Type: VIEW; Schema: so; Owner: -
  32508. --
  32509. CREATE VIEW pseudogenic_gene_segment AS
  32510. SELECT feature.feature_id AS pseudogenic_gene_segment_id,
  32511. feature.feature_id,
  32512. feature.dbxref_id,
  32513. feature.organism_id,
  32514. feature.name,
  32515. feature.uniquename,
  32516. feature.residues,
  32517. feature.seqlen,
  32518. feature.md5checksum,
  32519. feature.type_id,
  32520. feature.is_analysis,
  32521. feature.is_obsolete,
  32522. feature.timeaccessioned,
  32523. feature.timelastmodified
  32524. FROM (feature
  32525. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32526. WHERE ((cvterm.name)::text = 'pseudogenic_gene_segment'::text);
  32527. --
  32528. -- Name: pseudogenic_region; Type: VIEW; Schema: so; Owner: -
  32529. --
  32530. CREATE VIEW pseudogenic_region AS
  32531. SELECT feature.feature_id AS pseudogenic_region_id,
  32532. feature.feature_id,
  32533. feature.dbxref_id,
  32534. feature.organism_id,
  32535. feature.name,
  32536. feature.uniquename,
  32537. feature.residues,
  32538. feature.seqlen,
  32539. feature.md5checksum,
  32540. feature.type_id,
  32541. feature.is_analysis,
  32542. feature.is_obsolete,
  32543. feature.timeaccessioned,
  32544. feature.timelastmodified
  32545. FROM (feature
  32546. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32547. WHERE (((((((cvterm.name)::text = 'decayed_exon'::text) OR ((cvterm.name)::text = 'pseudogenic_exon'::text)) OR ((cvterm.name)::text = 'pseudogenic_transcript'::text)) OR ((cvterm.name)::text = 'pseudogenic_rRNA'::text)) OR ((cvterm.name)::text = 'pseudogenic_tRNA'::text)) OR ((cvterm.name)::text = 'pseudogenic_region'::text));
  32548. --
  32549. -- Name: pseudogenic_rrna; Type: VIEW; Schema: so; Owner: -
  32550. --
  32551. CREATE VIEW pseudogenic_rrna AS
  32552. SELECT feature.feature_id AS pseudogenic_rrna_id,
  32553. feature.feature_id,
  32554. feature.dbxref_id,
  32555. feature.organism_id,
  32556. feature.name,
  32557. feature.uniquename,
  32558. feature.residues,
  32559. feature.seqlen,
  32560. feature.md5checksum,
  32561. feature.type_id,
  32562. feature.is_analysis,
  32563. feature.is_obsolete,
  32564. feature.timeaccessioned,
  32565. feature.timelastmodified
  32566. FROM (feature
  32567. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32568. WHERE ((cvterm.name)::text = 'pseudogenic_rRNA'::text);
  32569. --
  32570. -- Name: pseudogenic_transcript; Type: VIEW; Schema: so; Owner: -
  32571. --
  32572. CREATE VIEW pseudogenic_transcript AS
  32573. SELECT feature.feature_id AS pseudogenic_transcript_id,
  32574. feature.feature_id,
  32575. feature.dbxref_id,
  32576. feature.organism_id,
  32577. feature.name,
  32578. feature.uniquename,
  32579. feature.residues,
  32580. feature.seqlen,
  32581. feature.md5checksum,
  32582. feature.type_id,
  32583. feature.is_analysis,
  32584. feature.is_obsolete,
  32585. feature.timeaccessioned,
  32586. feature.timelastmodified
  32587. FROM (feature
  32588. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32589. WHERE ((cvterm.name)::text = 'pseudogenic_transcript'::text);
  32590. --
  32591. -- Name: pseudogenic_trna; Type: VIEW; Schema: so; Owner: -
  32592. --
  32593. CREATE VIEW pseudogenic_trna AS
  32594. SELECT feature.feature_id AS pseudogenic_trna_id,
  32595. feature.feature_id,
  32596. feature.dbxref_id,
  32597. feature.organism_id,
  32598. feature.name,
  32599. feature.uniquename,
  32600. feature.residues,
  32601. feature.seqlen,
  32602. feature.md5checksum,
  32603. feature.type_id,
  32604. feature.is_analysis,
  32605. feature.is_obsolete,
  32606. feature.timeaccessioned,
  32607. feature.timelastmodified
  32608. FROM (feature
  32609. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32610. WHERE ((cvterm.name)::text = 'pseudogenic_tRNA'::text);
  32611. --
  32612. -- Name: pseudoknot; Type: VIEW; Schema: so; Owner: -
  32613. --
  32614. CREATE VIEW pseudoknot AS
  32615. SELECT feature.feature_id AS pseudoknot_id,
  32616. feature.feature_id,
  32617. feature.dbxref_id,
  32618. feature.organism_id,
  32619. feature.name,
  32620. feature.uniquename,
  32621. feature.residues,
  32622. feature.seqlen,
  32623. feature.md5checksum,
  32624. feature.type_id,
  32625. feature.is_analysis,
  32626. feature.is_obsolete,
  32627. feature.timeaccessioned,
  32628. feature.timelastmodified
  32629. FROM (feature
  32630. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32631. WHERE ((((cvterm.name)::text = 'recoding_pseudoknot'::text) OR ((cvterm.name)::text = 'H_pseudoknot'::text)) OR ((cvterm.name)::text = 'pseudoknot'::text));
  32632. --
  32633. -- Name: pseudouridine; Type: VIEW; Schema: so; Owner: -
  32634. --
  32635. CREATE VIEW pseudouridine AS
  32636. SELECT feature.feature_id AS pseudouridine_id,
  32637. feature.feature_id,
  32638. feature.dbxref_id,
  32639. feature.organism_id,
  32640. feature.name,
  32641. feature.uniquename,
  32642. feature.residues,
  32643. feature.seqlen,
  32644. feature.md5checksum,
  32645. feature.type_id,
  32646. feature.is_analysis,
  32647. feature.is_obsolete,
  32648. feature.timeaccessioned,
  32649. feature.timelastmodified
  32650. FROM (feature
  32651. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32652. WHERE ((cvterm.name)::text = 'pseudouridine'::text);
  32653. --
  32654. -- Name: pseudouridylation_guide_snorna; Type: VIEW; Schema: so; Owner: -
  32655. --
  32656. CREATE VIEW pseudouridylation_guide_snorna AS
  32657. SELECT feature.feature_id AS pseudouridylation_guide_snorna_id,
  32658. feature.feature_id,
  32659. feature.dbxref_id,
  32660. feature.organism_id,
  32661. feature.name,
  32662. feature.uniquename,
  32663. feature.residues,
  32664. feature.seqlen,
  32665. feature.md5checksum,
  32666. feature.type_id,
  32667. feature.is_analysis,
  32668. feature.is_obsolete,
  32669. feature.timeaccessioned,
  32670. feature.timelastmodified
  32671. FROM (feature
  32672. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32673. WHERE ((cvterm.name)::text = 'pseudouridylation_guide_snoRNA'::text);
  32674. --
  32675. -- Name: purine_to_pyrimidine_transversion; Type: VIEW; Schema: so; Owner: -
  32676. --
  32677. CREATE VIEW purine_to_pyrimidine_transversion AS
  32678. SELECT feature.feature_id AS purine_to_pyrimidine_transversion_id,
  32679. feature.feature_id,
  32680. feature.dbxref_id,
  32681. feature.organism_id,
  32682. feature.name,
  32683. feature.uniquename,
  32684. feature.residues,
  32685. feature.seqlen,
  32686. feature.md5checksum,
  32687. feature.type_id,
  32688. feature.is_analysis,
  32689. feature.is_obsolete,
  32690. feature.timeaccessioned,
  32691. feature.timelastmodified
  32692. FROM (feature
  32693. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32694. WHERE ((((((cvterm.name)::text = 'A_to_C_transversion'::text) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text));
  32695. --
  32696. -- Name: purine_transition; Type: VIEW; Schema: so; Owner: -
  32697. --
  32698. CREATE VIEW purine_transition AS
  32699. SELECT feature.feature_id AS purine_transition_id,
  32700. feature.feature_id,
  32701. feature.dbxref_id,
  32702. feature.organism_id,
  32703. feature.name,
  32704. feature.uniquename,
  32705. feature.residues,
  32706. feature.seqlen,
  32707. feature.md5checksum,
  32708. feature.type_id,
  32709. feature.is_analysis,
  32710. feature.is_obsolete,
  32711. feature.timeaccessioned,
  32712. feature.timelastmodified
  32713. FROM (feature
  32714. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32715. WHERE ((((cvterm.name)::text = 'A_to_G_transition'::text) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text));
  32716. --
  32717. -- Name: pyrimidine_to_purine_transversion; Type: VIEW; Schema: so; Owner: -
  32718. --
  32719. CREATE VIEW pyrimidine_to_purine_transversion AS
  32720. SELECT feature.feature_id AS pyrimidine_to_purine_transversion_id,
  32721. feature.feature_id,
  32722. feature.dbxref_id,
  32723. feature.organism_id,
  32724. feature.name,
  32725. feature.uniquename,
  32726. feature.residues,
  32727. feature.seqlen,
  32728. feature.md5checksum,
  32729. feature.type_id,
  32730. feature.is_analysis,
  32731. feature.is_obsolete,
  32732. feature.timeaccessioned,
  32733. feature.timelastmodified
  32734. FROM (feature
  32735. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32736. WHERE ((((((cvterm.name)::text = 'C_to_A_transversion'::text) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text));
  32737. --
  32738. -- Name: pyrimidine_transition; Type: VIEW; Schema: so; Owner: -
  32739. --
  32740. CREATE VIEW pyrimidine_transition AS
  32741. SELECT feature.feature_id AS pyrimidine_transition_id,
  32742. feature.feature_id,
  32743. feature.dbxref_id,
  32744. feature.organism_id,
  32745. feature.name,
  32746. feature.uniquename,
  32747. feature.residues,
  32748. feature.seqlen,
  32749. feature.md5checksum,
  32750. feature.type_id,
  32751. feature.is_analysis,
  32752. feature.is_obsolete,
  32753. feature.timeaccessioned,
  32754. feature.timelastmodified
  32755. FROM (feature
  32756. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32757. WHERE (((((cvterm.name)::text = 'C_to_T_transition'::text) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text));
  32758. --
  32759. -- Name: pyrosequenced_read; Type: VIEW; Schema: so; Owner: -
  32760. --
  32761. CREATE VIEW pyrosequenced_read AS
  32762. SELECT feature.feature_id AS pyrosequenced_read_id,
  32763. feature.feature_id,
  32764. feature.dbxref_id,
  32765. feature.organism_id,
  32766. feature.name,
  32767. feature.uniquename,
  32768. feature.residues,
  32769. feature.seqlen,
  32770. feature.md5checksum,
  32771. feature.type_id,
  32772. feature.is_analysis,
  32773. feature.is_obsolete,
  32774. feature.timeaccessioned,
  32775. feature.timelastmodified
  32776. FROM (feature
  32777. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32778. WHERE ((cvterm.name)::text = 'pyrosequenced_read'::text);
  32779. --
  32780. -- Name: pyrrolysine; Type: VIEW; Schema: so; Owner: -
  32781. --
  32782. CREATE VIEW pyrrolysine AS
  32783. SELECT feature.feature_id AS pyrrolysine_id,
  32784. feature.feature_id,
  32785. feature.dbxref_id,
  32786. feature.organism_id,
  32787. feature.name,
  32788. feature.uniquename,
  32789. feature.residues,
  32790. feature.seqlen,
  32791. feature.md5checksum,
  32792. feature.type_id,
  32793. feature.is_analysis,
  32794. feature.is_obsolete,
  32795. feature.timeaccessioned,
  32796. feature.timelastmodified
  32797. FROM (feature
  32798. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32799. WHERE ((cvterm.name)::text = 'pyrrolysine'::text);
  32800. --
  32801. -- Name: pyrrolysine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  32802. --
  32803. CREATE VIEW pyrrolysine_trna_primary_transcript AS
  32804. SELECT feature.feature_id AS pyrrolysine_trna_primary_transcript_id,
  32805. feature.feature_id,
  32806. feature.dbxref_id,
  32807. feature.organism_id,
  32808. feature.name,
  32809. feature.uniquename,
  32810. feature.residues,
  32811. feature.seqlen,
  32812. feature.md5checksum,
  32813. feature.type_id,
  32814. feature.is_analysis,
  32815. feature.is_obsolete,
  32816. feature.timeaccessioned,
  32817. feature.timelastmodified
  32818. FROM (feature
  32819. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32820. WHERE ((cvterm.name)::text = 'pyrrolysine_tRNA_primary_transcript'::text);
  32821. --
  32822. -- Name: pyrrolysyl_trna; Type: VIEW; Schema: so; Owner: -
  32823. --
  32824. CREATE VIEW pyrrolysyl_trna AS
  32825. SELECT feature.feature_id AS pyrrolysyl_trna_id,
  32826. feature.feature_id,
  32827. feature.dbxref_id,
  32828. feature.organism_id,
  32829. feature.name,
  32830. feature.uniquename,
  32831. feature.residues,
  32832. feature.seqlen,
  32833. feature.md5checksum,
  32834. feature.type_id,
  32835. feature.is_analysis,
  32836. feature.is_obsolete,
  32837. feature.timeaccessioned,
  32838. feature.timelastmodified
  32839. FROM (feature
  32840. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32841. WHERE ((cvterm.name)::text = 'pyrrolysyl_tRNA'::text);
  32842. --
  32843. -- Name: qtl; Type: VIEW; Schema: so; Owner: -
  32844. --
  32845. CREATE VIEW qtl AS
  32846. SELECT feature.feature_id AS qtl_id,
  32847. feature.feature_id,
  32848. feature.dbxref_id,
  32849. feature.organism_id,
  32850. feature.name,
  32851. feature.uniquename,
  32852. feature.residues,
  32853. feature.seqlen,
  32854. feature.md5checksum,
  32855. feature.type_id,
  32856. feature.is_analysis,
  32857. feature.is_obsolete,
  32858. feature.timeaccessioned,
  32859. feature.timelastmodified
  32860. FROM (feature
  32861. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32862. WHERE ((cvterm.name)::text = 'QTL'::text);
  32863. --
  32864. -- Name: quality_value; Type: VIEW; Schema: so; Owner: -
  32865. --
  32866. CREATE VIEW quality_value AS
  32867. SELECT feature.feature_id AS quality_value_id,
  32868. feature.feature_id,
  32869. feature.dbxref_id,
  32870. feature.organism_id,
  32871. feature.name,
  32872. feature.uniquename,
  32873. feature.residues,
  32874. feature.seqlen,
  32875. feature.md5checksum,
  32876. feature.type_id,
  32877. feature.is_analysis,
  32878. feature.is_obsolete,
  32879. feature.timeaccessioned,
  32880. feature.timelastmodified
  32881. FROM (feature
  32882. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32883. WHERE ((cvterm.name)::text = 'quality_value'::text);
  32884. --
  32885. -- Name: quantitative_variant; Type: VIEW; Schema: so; Owner: -
  32886. --
  32887. CREATE VIEW quantitative_variant AS
  32888. SELECT feature.feature_id AS quantitative_variant_id,
  32889. feature.feature_id,
  32890. feature.dbxref_id,
  32891. feature.organism_id,
  32892. feature.name,
  32893. feature.uniquename,
  32894. feature.residues,
  32895. feature.seqlen,
  32896. feature.md5checksum,
  32897. feature.type_id,
  32898. feature.is_analysis,
  32899. feature.is_obsolete,
  32900. feature.timeaccessioned,
  32901. feature.timelastmodified
  32902. FROM (feature
  32903. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32904. WHERE ((cvterm.name)::text = 'quantitative_variant'::text);
  32905. --
  32906. -- Name: queuosine; Type: VIEW; Schema: so; Owner: -
  32907. --
  32908. CREATE VIEW queuosine AS
  32909. SELECT feature.feature_id AS queuosine_id,
  32910. feature.feature_id,
  32911. feature.dbxref_id,
  32912. feature.organism_id,
  32913. feature.name,
  32914. feature.uniquename,
  32915. feature.residues,
  32916. feature.seqlen,
  32917. feature.md5checksum,
  32918. feature.type_id,
  32919. feature.is_analysis,
  32920. feature.is_obsolete,
  32921. feature.timeaccessioned,
  32922. feature.timelastmodified
  32923. FROM (feature
  32924. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32925. WHERE ((cvterm.name)::text = 'queuosine'::text);
  32926. --
  32927. -- Name: r_five_prime_ltr_region; Type: VIEW; Schema: so; Owner: -
  32928. --
  32929. CREATE VIEW r_five_prime_ltr_region AS
  32930. SELECT feature.feature_id AS r_five_prime_ltr_region_id,
  32931. feature.feature_id,
  32932. feature.dbxref_id,
  32933. feature.organism_id,
  32934. feature.name,
  32935. feature.uniquename,
  32936. feature.residues,
  32937. feature.seqlen,
  32938. feature.md5checksum,
  32939. feature.type_id,
  32940. feature.is_analysis,
  32941. feature.is_obsolete,
  32942. feature.timeaccessioned,
  32943. feature.timelastmodified
  32944. FROM (feature
  32945. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32946. WHERE ((cvterm.name)::text = 'R_five_prime_LTR_region'::text);
  32947. --
  32948. -- Name: r_gna; Type: VIEW; Schema: so; Owner: -
  32949. --
  32950. CREATE VIEW r_gna AS
  32951. SELECT feature.feature_id AS r_gna_id,
  32952. feature.feature_id,
  32953. feature.dbxref_id,
  32954. feature.organism_id,
  32955. feature.name,
  32956. feature.uniquename,
  32957. feature.residues,
  32958. feature.seqlen,
  32959. feature.md5checksum,
  32960. feature.type_id,
  32961. feature.is_analysis,
  32962. feature.is_obsolete,
  32963. feature.timeaccessioned,
  32964. feature.timelastmodified
  32965. FROM (feature
  32966. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32967. WHERE ((cvterm.name)::text = 'R_GNA'::text);
  32968. --
  32969. -- Name: r_gna_oligo; Type: VIEW; Schema: so; Owner: -
  32970. --
  32971. CREATE VIEW r_gna_oligo AS
  32972. SELECT feature.feature_id AS r_gna_oligo_id,
  32973. feature.feature_id,
  32974. feature.dbxref_id,
  32975. feature.organism_id,
  32976. feature.name,
  32977. feature.uniquename,
  32978. feature.residues,
  32979. feature.seqlen,
  32980. feature.md5checksum,
  32981. feature.type_id,
  32982. feature.is_analysis,
  32983. feature.is_obsolete,
  32984. feature.timeaccessioned,
  32985. feature.timelastmodified
  32986. FROM (feature
  32987. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  32988. WHERE ((cvterm.name)::text = 'R_GNA_oligo'::text);
  32989. --
  32990. -- Name: r_ltr_region; Type: VIEW; Schema: so; Owner: -
  32991. --
  32992. CREATE VIEW r_ltr_region AS
  32993. SELECT feature.feature_id AS r_ltr_region_id,
  32994. feature.feature_id,
  32995. feature.dbxref_id,
  32996. feature.organism_id,
  32997. feature.name,
  32998. feature.uniquename,
  32999. feature.residues,
  33000. feature.seqlen,
  33001. feature.md5checksum,
  33002. feature.type_id,
  33003. feature.is_analysis,
  33004. feature.is_obsolete,
  33005. feature.timeaccessioned,
  33006. feature.timelastmodified
  33007. FROM (feature
  33008. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33009. WHERE (((cvterm.name)::text = 'R_five_prime_LTR_region'::text) OR ((cvterm.name)::text = 'R_LTR_region'::text));
  33010. --
  33011. -- Name: r_three_prime_ltr_region; Type: VIEW; Schema: so; Owner: -
  33012. --
  33013. CREATE VIEW r_three_prime_ltr_region AS
  33014. SELECT feature.feature_id AS r_three_prime_ltr_region_id,
  33015. feature.feature_id,
  33016. feature.dbxref_id,
  33017. feature.organism_id,
  33018. feature.name,
  33019. feature.uniquename,
  33020. feature.residues,
  33021. feature.seqlen,
  33022. feature.md5checksum,
  33023. feature.type_id,
  33024. feature.is_analysis,
  33025. feature.is_obsolete,
  33026. feature.timeaccessioned,
  33027. feature.timelastmodified
  33028. FROM (feature
  33029. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33030. WHERE ((cvterm.name)::text = 'R_three_prime_LTR_region'::text);
  33031. --
  33032. -- Name: random_sequence; Type: VIEW; Schema: so; Owner: -
  33033. --
  33034. CREATE VIEW random_sequence AS
  33035. SELECT feature.feature_id AS random_sequence_id,
  33036. feature.feature_id,
  33037. feature.dbxref_id,
  33038. feature.organism_id,
  33039. feature.name,
  33040. feature.uniquename,
  33041. feature.residues,
  33042. feature.seqlen,
  33043. feature.md5checksum,
  33044. feature.type_id,
  33045. feature.is_analysis,
  33046. feature.is_obsolete,
  33047. feature.timeaccessioned,
  33048. feature.timelastmodified
  33049. FROM (feature
  33050. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33051. WHERE ((cvterm.name)::text = 'random_sequence'::text);
  33052. --
  33053. -- Name: rapd; Type: VIEW; Schema: so; Owner: -
  33054. --
  33055. CREATE VIEW rapd AS
  33056. SELECT feature.feature_id AS rapd_id,
  33057. feature.feature_id,
  33058. feature.dbxref_id,
  33059. feature.organism_id,
  33060. feature.name,
  33061. feature.uniquename,
  33062. feature.residues,
  33063. feature.seqlen,
  33064. feature.md5checksum,
  33065. feature.type_id,
  33066. feature.is_analysis,
  33067. feature.is_obsolete,
  33068. feature.timeaccessioned,
  33069. feature.timelastmodified
  33070. FROM (feature
  33071. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33072. WHERE ((cvterm.name)::text = 'RAPD'::text);
  33073. --
  33074. -- Name: rare_variant; Type: VIEW; Schema: so; Owner: -
  33075. --
  33076. CREATE VIEW rare_variant AS
  33077. SELECT feature.feature_id AS rare_variant_id,
  33078. feature.feature_id,
  33079. feature.dbxref_id,
  33080. feature.organism_id,
  33081. feature.name,
  33082. feature.uniquename,
  33083. feature.residues,
  33084. feature.seqlen,
  33085. feature.md5checksum,
  33086. feature.type_id,
  33087. feature.is_analysis,
  33088. feature.is_obsolete,
  33089. feature.timeaccessioned,
  33090. feature.timelastmodified
  33091. FROM (feature
  33092. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33093. WHERE ((cvterm.name)::text = 'rare_variant'::text);
  33094. --
  33095. -- Name: rasirna; Type: VIEW; Schema: so; Owner: -
  33096. --
  33097. CREATE VIEW rasirna AS
  33098. SELECT feature.feature_id AS rasirna_id,
  33099. feature.feature_id,
  33100. feature.dbxref_id,
  33101. feature.organism_id,
  33102. feature.name,
  33103. feature.uniquename,
  33104. feature.residues,
  33105. feature.seqlen,
  33106. feature.md5checksum,
  33107. feature.type_id,
  33108. feature.is_analysis,
  33109. feature.is_obsolete,
  33110. feature.timeaccessioned,
  33111. feature.timelastmodified
  33112. FROM (feature
  33113. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33114. WHERE ((cvterm.name)::text = 'rasiRNA'::text);
  33115. --
  33116. -- Name: rate_of_transcription_variant; Type: VIEW; Schema: so; Owner: -
  33117. --
  33118. CREATE VIEW rate_of_transcription_variant AS
  33119. SELECT feature.feature_id AS rate_of_transcription_variant_id,
  33120. feature.feature_id,
  33121. feature.dbxref_id,
  33122. feature.organism_id,
  33123. feature.name,
  33124. feature.uniquename,
  33125. feature.residues,
  33126. feature.seqlen,
  33127. feature.md5checksum,
  33128. feature.type_id,
  33129. feature.is_analysis,
  33130. feature.is_obsolete,
  33131. feature.timeaccessioned,
  33132. feature.timelastmodified
  33133. FROM (feature
  33134. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33135. WHERE ((((cvterm.name)::text = 'increased_transcription_rate_variant'::text) OR ((cvterm.name)::text = 'decreased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'rate_of_transcription_variant'::text));
  33136. --
  33137. -- Name: read; Type: VIEW; Schema: so; Owner: -
  33138. --
  33139. CREATE VIEW read AS
  33140. SELECT feature.feature_id AS read_id,
  33141. feature.feature_id,
  33142. feature.dbxref_id,
  33143. feature.organism_id,
  33144. feature.name,
  33145. feature.uniquename,
  33146. feature.residues,
  33147. feature.seqlen,
  33148. feature.md5checksum,
  33149. feature.type_id,
  33150. feature.is_analysis,
  33151. feature.is_obsolete,
  33152. feature.timeaccessioned,
  33153. feature.timelastmodified
  33154. FROM (feature
  33155. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33156. WHERE ((((((((((((cvterm.name)::text = 'read_pair'::text) OR ((cvterm.name)::text = 'contig_read'::text)) OR ((cvterm.name)::text = 'BAC_end'::text)) OR ((cvterm.name)::text = 'dye_terminator_read'::text)) OR ((cvterm.name)::text = 'pyrosequenced_read'::text)) OR ((cvterm.name)::text = 'ligation_based_read'::text)) OR ((cvterm.name)::text = 'polymerase_synthesis_read'::text)) OR ((cvterm.name)::text = 'PAC_end'::text)) OR ((cvterm.name)::text = 'YAC_end'::text)) OR ((cvterm.name)::text = 'clone_end'::text)) OR ((cvterm.name)::text = 'read'::text));
  33157. --
  33158. -- Name: read_pair; Type: VIEW; Schema: so; Owner: -
  33159. --
  33160. CREATE VIEW read_pair AS
  33161. SELECT feature.feature_id AS read_pair_id,
  33162. feature.feature_id,
  33163. feature.dbxref_id,
  33164. feature.organism_id,
  33165. feature.name,
  33166. feature.uniquename,
  33167. feature.residues,
  33168. feature.seqlen,
  33169. feature.md5checksum,
  33170. feature.type_id,
  33171. feature.is_analysis,
  33172. feature.is_obsolete,
  33173. feature.timeaccessioned,
  33174. feature.timelastmodified
  33175. FROM (feature
  33176. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33177. WHERE ((cvterm.name)::text = 'read_pair'::text);
  33178. --
  33179. -- Name: reading_frame; Type: VIEW; Schema: so; Owner: -
  33180. --
  33181. CREATE VIEW reading_frame AS
  33182. SELECT feature.feature_id AS reading_frame_id,
  33183. feature.feature_id,
  33184. feature.dbxref_id,
  33185. feature.organism_id,
  33186. feature.name,
  33187. feature.uniquename,
  33188. feature.residues,
  33189. feature.seqlen,
  33190. feature.md5checksum,
  33191. feature.type_id,
  33192. feature.is_analysis,
  33193. feature.is_obsolete,
  33194. feature.timeaccessioned,
  33195. feature.timelastmodified
  33196. FROM (feature
  33197. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33198. WHERE ((((((cvterm.name)::text = 'ORF'::text) OR ((cvterm.name)::text = 'blocked_reading_frame'::text)) OR ((cvterm.name)::text = 'mini_gene'::text)) OR ((cvterm.name)::text = 'rescue_mini_gene'::text)) OR ((cvterm.name)::text = 'reading_frame'::text));
  33199. --
  33200. -- Name: reagent; Type: VIEW; Schema: so; Owner: -
  33201. --
  33202. CREATE VIEW reagent AS
  33203. SELECT feature.feature_id AS reagent_id,
  33204. feature.feature_id,
  33205. feature.dbxref_id,
  33206. feature.organism_id,
  33207. feature.name,
  33208. feature.uniquename,
  33209. feature.residues,
  33210. feature.seqlen,
  33211. feature.md5checksum,
  33212. feature.type_id,
  33213. feature.is_analysis,
  33214. feature.is_obsolete,
  33215. feature.timeaccessioned,
  33216. feature.timelastmodified
  33217. FROM (feature
  33218. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33219. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'PCR_product'::text) OR ((cvterm.name)::text = 'clone'::text)) OR ((cvterm.name)::text = 'rescue_region'::text)) OR ((cvterm.name)::text = 'oligo'::text)) OR ((cvterm.name)::text = 'clone_insert'::text)) OR ((cvterm.name)::text = 'cloned_region'::text)) OR ((cvterm.name)::text = 'databank_entry'::text)) OR ((cvterm.name)::text = 'RAPD'::text)) OR ((cvterm.name)::text = 'genomic_clone'::text)) OR ((cvterm.name)::text = 'cDNA_clone'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'validated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'invalidated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'three_prime_RACE_clone'::text)) OR ((cvterm.name)::text = 'chimeric_cDNA_clone'::text)) OR ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'aptamer'::text)) OR ((cvterm.name)::text = 'probe'::text)) OR ((cvterm.name)::text = 'tag'::text)) OR ((cvterm.name)::text = 'ss_oligo'::text)) OR ((cvterm.name)::text = 'ds_oligo'::text)) OR ((cvterm.name)::text = 'DNAzyme'::text)) OR ((cvterm.name)::text = 'synthetic_oligo'::text)) OR ((cvterm.name)::text = 'DNA_aptamer'::text)) OR ((cvterm.name)::text = 'RNA_aptamer'::text)) OR ((cvterm.name)::text = 'microarray_oligo'::text)) OR ((cvterm.name)::text = 'SAGE_tag'::text)) OR ((cvterm.name)::text = 'STS'::text)) OR ((cvterm.name)::text = 'EST'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'five_prime_EST'::text)) OR ((cvterm.name)::text = 'three_prime_EST'::text)) OR ((cvterm.name)::text = 'UST'::text)) OR ((cvterm.name)::text = 'RST'::text)) OR ((cvterm.name)::text = 'three_prime_UST'::text)) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'three_prime_RST'::text)) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'primer'::text)) OR ((cvterm.name)::text = 'sequencing_primer'::text)) OR ((cvterm.name)::text = 'forward_primer'::text)) OR ((cvterm.name)::text = 'reverse_primer'::text)) OR ((cvterm.name)::text = 'ASPE_primer'::text)) OR ((cvterm.name)::text = 'dCAPS_primer'::text)) OR ((cvterm.name)::text = 'RNAi_reagent'::text)) OR ((cvterm.name)::text = 'DNA_constraint_sequence'::text)) OR ((cvterm.name)::text = 'morpholino_oligo'::text)) OR ((cvterm.name)::text = 'PNA_oligo'::text)) OR ((cvterm.name)::text = 'LNA_oligo'::text)) OR ((cvterm.name)::text = 'TNA_oligo'::text)) OR ((cvterm.name)::text = 'GNA_oligo'::text)) OR ((cvterm.name)::text = 'R_GNA_oligo'::text)) OR ((cvterm.name)::text = 'S_GNA_oligo'::text)) OR ((cvterm.name)::text = 'cloned_cDNA_insert'::text)) OR ((cvterm.name)::text = 'cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'BAC_cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'reagent'::text));
  33220. --
  33221. -- Name: rearranged_at_dna_level; Type: VIEW; Schema: so; Owner: -
  33222. --
  33223. CREATE VIEW rearranged_at_dna_level AS
  33224. SELECT feature.feature_id AS rearranged_at_dna_level_id,
  33225. feature.feature_id,
  33226. feature.dbxref_id,
  33227. feature.organism_id,
  33228. feature.name,
  33229. feature.uniquename,
  33230. feature.residues,
  33231. feature.seqlen,
  33232. feature.md5checksum,
  33233. feature.type_id,
  33234. feature.is_analysis,
  33235. feature.is_obsolete,
  33236. feature.timeaccessioned,
  33237. feature.timelastmodified
  33238. FROM (feature
  33239. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33240. WHERE ((cvterm.name)::text = 'rearranged_at_DNA_level'::text);
  33241. --
  33242. -- Name: reciprocal; Type: VIEW; Schema: so; Owner: -
  33243. --
  33244. CREATE VIEW reciprocal AS
  33245. SELECT feature.feature_id AS reciprocal_id,
  33246. feature.feature_id,
  33247. feature.dbxref_id,
  33248. feature.organism_id,
  33249. feature.name,
  33250. feature.uniquename,
  33251. feature.residues,
  33252. feature.seqlen,
  33253. feature.md5checksum,
  33254. feature.type_id,
  33255. feature.is_analysis,
  33256. feature.is_obsolete,
  33257. feature.timeaccessioned,
  33258. feature.timelastmodified
  33259. FROM (feature
  33260. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33261. WHERE ((cvterm.name)::text = 'reciprocal'::text);
  33262. --
  33263. -- Name: reciprocal_chromosomal_translocation; Type: VIEW; Schema: so; Owner: -
  33264. --
  33265. CREATE VIEW reciprocal_chromosomal_translocation AS
  33266. SELECT feature.feature_id AS reciprocal_chromosomal_translocation_id,
  33267. feature.feature_id,
  33268. feature.dbxref_id,
  33269. feature.organism_id,
  33270. feature.name,
  33271. feature.uniquename,
  33272. feature.residues,
  33273. feature.seqlen,
  33274. feature.md5checksum,
  33275. feature.type_id,
  33276. feature.is_analysis,
  33277. feature.is_obsolete,
  33278. feature.timeaccessioned,
  33279. feature.timelastmodified
  33280. FROM (feature
  33281. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33282. WHERE ((cvterm.name)::text = 'reciprocal_chromosomal_translocation'::text);
  33283. --
  33284. -- Name: recoded; Type: VIEW; Schema: so; Owner: -
  33285. --
  33286. CREATE VIEW recoded AS
  33287. SELECT feature.feature_id AS recoded_id,
  33288. feature.feature_id,
  33289. feature.dbxref_id,
  33290. feature.organism_id,
  33291. feature.name,
  33292. feature.uniquename,
  33293. feature.residues,
  33294. feature.seqlen,
  33295. feature.md5checksum,
  33296. feature.type_id,
  33297. feature.is_analysis,
  33298. feature.is_obsolete,
  33299. feature.timeaccessioned,
  33300. feature.timelastmodified
  33301. FROM (feature
  33302. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33303. WHERE (((((((cvterm.name)::text = 'codon_redefined'::text) OR ((cvterm.name)::text = 'recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'minus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'plus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'recoded'::text));
  33304. --
  33305. -- Name: recoded_by_translational_bypass; Type: VIEW; Schema: so; Owner: -
  33306. --
  33307. CREATE VIEW recoded_by_translational_bypass AS
  33308. SELECT feature.feature_id AS recoded_by_translational_bypass_id,
  33309. feature.feature_id,
  33310. feature.dbxref_id,
  33311. feature.organism_id,
  33312. feature.name,
  33313. feature.uniquename,
  33314. feature.residues,
  33315. feature.seqlen,
  33316. feature.md5checksum,
  33317. feature.type_id,
  33318. feature.is_analysis,
  33319. feature.is_obsolete,
  33320. feature.timeaccessioned,
  33321. feature.timelastmodified
  33322. FROM (feature
  33323. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33324. WHERE ((cvterm.name)::text = 'recoded_by_translational_bypass'::text);
  33325. --
  33326. -- Name: recoded_codon; Type: VIEW; Schema: so; Owner: -
  33327. --
  33328. CREATE VIEW recoded_codon AS
  33329. SELECT feature.feature_id AS recoded_codon_id,
  33330. feature.feature_id,
  33331. feature.dbxref_id,
  33332. feature.organism_id,
  33333. feature.name,
  33334. feature.uniquename,
  33335. feature.residues,
  33336. feature.seqlen,
  33337. feature.md5checksum,
  33338. feature.type_id,
  33339. feature.is_analysis,
  33340. feature.is_obsolete,
  33341. feature.timeaccessioned,
  33342. feature.timelastmodified
  33343. FROM (feature
  33344. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33345. WHERE (((((cvterm.name)::text = 'stop_codon_read_through'::text) OR ((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'recoded_codon'::text));
  33346. --
  33347. -- Name: recoded_mrna; Type: VIEW; Schema: so; Owner: -
  33348. --
  33349. CREATE VIEW recoded_mrna AS
  33350. SELECT feature.feature_id AS recoded_mrna_id,
  33351. feature.feature_id,
  33352. feature.dbxref_id,
  33353. feature.organism_id,
  33354. feature.name,
  33355. feature.uniquename,
  33356. feature.residues,
  33357. feature.seqlen,
  33358. feature.md5checksum,
  33359. feature.type_id,
  33360. feature.is_analysis,
  33361. feature.is_obsolete,
  33362. feature.timeaccessioned,
  33363. feature.timelastmodified
  33364. FROM (feature
  33365. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33366. WHERE ((((cvterm.name)::text = 'mRNA_recoded_by_translational_bypass'::text) OR ((cvterm.name)::text = 'mRNA_recoded_by_codon_redefinition'::text)) OR ((cvterm.name)::text = 'recoded_mRNA'::text));
  33367. --
  33368. -- Name: recoding_pseudoknot; Type: VIEW; Schema: so; Owner: -
  33369. --
  33370. CREATE VIEW recoding_pseudoknot AS
  33371. SELECT feature.feature_id AS recoding_pseudoknot_id,
  33372. feature.feature_id,
  33373. feature.dbxref_id,
  33374. feature.organism_id,
  33375. feature.name,
  33376. feature.uniquename,
  33377. feature.residues,
  33378. feature.seqlen,
  33379. feature.md5checksum,
  33380. feature.type_id,
  33381. feature.is_analysis,
  33382. feature.is_obsolete,
  33383. feature.timeaccessioned,
  33384. feature.timelastmodified
  33385. FROM (feature
  33386. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33387. WHERE ((cvterm.name)::text = 'recoding_pseudoknot'::text);
  33388. --
  33389. -- Name: recoding_stimulatory_region; Type: VIEW; Schema: so; Owner: -
  33390. --
  33391. CREATE VIEW recoding_stimulatory_region AS
  33392. SELECT feature.feature_id AS recoding_stimulatory_region_id,
  33393. feature.feature_id,
  33394. feature.dbxref_id,
  33395. feature.organism_id,
  33396. feature.name,
  33397. feature.uniquename,
  33398. feature.residues,
  33399. feature.seqlen,
  33400. feature.md5checksum,
  33401. feature.type_id,
  33402. feature.is_analysis,
  33403. feature.is_obsolete,
  33404. feature.timeaccessioned,
  33405. feature.timelastmodified
  33406. FROM (feature
  33407. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33408. WHERE ((((((((((((((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text) OR ((cvterm.name)::text = 'SECIS_element'::text)) OR ((cvterm.name)::text = 'three_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'five_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'stop_codon_signal'::text)) OR ((cvterm.name)::text = 'three_prime_stem_loop_structure'::text)) OR ((cvterm.name)::text = 'flanking_three_prime_quadruplet_recoding_signal'::text)) OR ((cvterm.name)::text = 'three_prime_repeat_recoding_signal'::text)) OR ((cvterm.name)::text = 'distant_three_prime_recoding_signal'::text)) OR ((cvterm.name)::text = 'UAG_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UAA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UGA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'recoding_stimulatory_region'::text));
  33409. --
  33410. -- Name: recombination_feature; Type: VIEW; Schema: so; Owner: -
  33411. --
  33412. CREATE VIEW recombination_feature AS
  33413. SELECT feature.feature_id AS recombination_feature_id,
  33414. feature.feature_id,
  33415. feature.dbxref_id,
  33416. feature.organism_id,
  33417. feature.name,
  33418. feature.uniquename,
  33419. feature.residues,
  33420. feature.seqlen,
  33421. feature.md5checksum,
  33422. feature.type_id,
  33423. feature.is_analysis,
  33424. feature.is_obsolete,
  33425. feature.timeaccessioned,
  33426. feature.timelastmodified
  33427. FROM (feature
  33428. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33429. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'recombination_hotspot'::text) OR ((cvterm.name)::text = 'haplotype_block'::text)) OR ((cvterm.name)::text = 'sequence_rearrangement_feature'::text)) OR ((cvterm.name)::text = 'iDNA'::text)) OR ((cvterm.name)::text = 'specific_recombination_site'::text)) OR ((cvterm.name)::text = 'chromosome_breakage_sequence'::text)) OR ((cvterm.name)::text = 'internal_eliminated_sequence'::text)) OR ((cvterm.name)::text = 'macronucleus_destined_segment'::text)) OR ((cvterm.name)::text = 'recombination_feature_of_rearranged_gene'::text)) OR ((cvterm.name)::text = 'site_specific_recombination_target_region'::text)) OR ((cvterm.name)::text = 'recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text)) OR ((cvterm.name)::text = 'D_gene'::text)) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'three_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'VD_gene'::text)) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'integration_excision_site'::text)) OR ((cvterm.name)::text = 'resolution_site'::text)) OR ((cvterm.name)::text = 'inversion_site'::text)) OR ((cvterm.name)::text = 'inversion_site_part'::text)) OR ((cvterm.name)::text = 'attI_site'::text)) OR ((cvterm.name)::text = 'attP_site'::text)) OR ((cvterm.name)::text = 'attB_site'::text)) OR ((cvterm.name)::text = 'attL_site'::text)) OR ((cvterm.name)::text = 'attR_site'::text)) OR ((cvterm.name)::text = 'attC_site'::text)) OR ((cvterm.name)::text = 'attCtn_site'::text)) OR ((cvterm.name)::text = 'loxP_site'::text)) OR ((cvterm.name)::text = 'dif_site'::text)) OR ((cvterm.name)::text = 'FRT_site'::text)) OR ((cvterm.name)::text = 'IRLinv_site'::text)) OR ((cvterm.name)::text = 'IRRinv_site'::text)) OR ((cvterm.name)::text = 'recombination_feature'::text));
  33430. --
  33431. -- Name: recombination_feature_of_rearranged_gene; Type: VIEW; Schema: so; Owner: -
  33432. --
  33433. CREATE VIEW recombination_feature_of_rearranged_gene AS
  33434. SELECT feature.feature_id AS recombination_feature_of_rearranged_gene_id,
  33435. feature.feature_id,
  33436. feature.dbxref_id,
  33437. feature.organism_id,
  33438. feature.name,
  33439. feature.uniquename,
  33440. feature.residues,
  33441. feature.seqlen,
  33442. feature.md5checksum,
  33443. feature.type_id,
  33444. feature.is_analysis,
  33445. feature.is_obsolete,
  33446. feature.timeaccessioned,
  33447. feature.timelastmodified
  33448. FROM (feature
  33449. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33450. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_feature'::text) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text)) OR ((cvterm.name)::text = 'D_gene'::text)) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'three_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'VD_gene'::text)) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'recombination_feature_of_rearranged_gene'::text));
  33451. --
  33452. -- Name: recombination_hotspot; Type: VIEW; Schema: so; Owner: -
  33453. --
  33454. CREATE VIEW recombination_hotspot AS
  33455. SELECT feature.feature_id AS recombination_hotspot_id,
  33456. feature.feature_id,
  33457. feature.dbxref_id,
  33458. feature.organism_id,
  33459. feature.name,
  33460. feature.uniquename,
  33461. feature.residues,
  33462. feature.seqlen,
  33463. feature.md5checksum,
  33464. feature.type_id,
  33465. feature.is_analysis,
  33466. feature.is_obsolete,
  33467. feature.timeaccessioned,
  33468. feature.timelastmodified
  33469. FROM (feature
  33470. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33471. WHERE ((cvterm.name)::text = 'recombination_hotspot'::text);
  33472. --
  33473. -- Name: recombination_regulatory_region; Type: VIEW; Schema: so; Owner: -
  33474. --
  33475. CREATE VIEW recombination_regulatory_region AS
  33476. SELECT feature.feature_id AS recombination_regulatory_region_id,
  33477. feature.feature_id,
  33478. feature.dbxref_id,
  33479. feature.organism_id,
  33480. feature.name,
  33481. feature.uniquename,
  33482. feature.residues,
  33483. feature.seqlen,
  33484. feature.md5checksum,
  33485. feature.type_id,
  33486. feature.is_analysis,
  33487. feature.is_obsolete,
  33488. feature.timeaccessioned,
  33489. feature.timelastmodified
  33490. FROM (feature
  33491. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33492. WHERE ((cvterm.name)::text = 'recombination_regulatory_region'::text);
  33493. --
  33494. -- Name: recombination_signal_sequence; Type: VIEW; Schema: so; Owner: -
  33495. --
  33496. CREATE VIEW recombination_signal_sequence AS
  33497. SELECT feature.feature_id AS recombination_signal_sequence_id,
  33498. feature.feature_id,
  33499. feature.dbxref_id,
  33500. feature.organism_id,
  33501. feature.name,
  33502. feature.uniquename,
  33503. feature.residues,
  33504. feature.seqlen,
  33505. feature.md5checksum,
  33506. feature.type_id,
  33507. feature.is_analysis,
  33508. feature.is_obsolete,
  33509. feature.timeaccessioned,
  33510. feature.timelastmodified
  33511. FROM (feature
  33512. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33513. WHERE ((cvterm.name)::text = 'recombination_signal_sequence'::text);
  33514. --
  33515. -- Name: recombinationally_inverted_gene; Type: VIEW; Schema: so; Owner: -
  33516. --
  33517. CREATE VIEW recombinationally_inverted_gene AS
  33518. SELECT feature.feature_id AS recombinationally_inverted_gene_id,
  33519. feature.feature_id,
  33520. feature.dbxref_id,
  33521. feature.organism_id,
  33522. feature.name,
  33523. feature.uniquename,
  33524. feature.residues,
  33525. feature.seqlen,
  33526. feature.md5checksum,
  33527. feature.type_id,
  33528. feature.is_analysis,
  33529. feature.is_obsolete,
  33530. feature.timeaccessioned,
  33531. feature.timelastmodified
  33532. FROM (feature
  33533. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33534. WHERE ((cvterm.name)::text = 'recombinationally_inverted_gene'::text);
  33535. --
  33536. -- Name: recombinationally_rearranged; Type: VIEW; Schema: so; Owner: -
  33537. --
  33538. CREATE VIEW recombinationally_rearranged AS
  33539. SELECT feature.feature_id AS recombinationally_rearranged_id,
  33540. feature.feature_id,
  33541. feature.dbxref_id,
  33542. feature.organism_id,
  33543. feature.name,
  33544. feature.uniquename,
  33545. feature.residues,
  33546. feature.seqlen,
  33547. feature.md5checksum,
  33548. feature.type_id,
  33549. feature.is_analysis,
  33550. feature.is_obsolete,
  33551. feature.timeaccessioned,
  33552. feature.timelastmodified
  33553. FROM (feature
  33554. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33555. WHERE ((cvterm.name)::text = 'recombinationally_rearranged'::text);
  33556. --
  33557. -- Name: recombinationally_rearranged_gene; Type: VIEW; Schema: so; Owner: -
  33558. --
  33559. CREATE VIEW recombinationally_rearranged_gene AS
  33560. SELECT feature.feature_id AS recombinationally_rearranged_gene_id,
  33561. feature.feature_id,
  33562. feature.dbxref_id,
  33563. feature.organism_id,
  33564. feature.name,
  33565. feature.uniquename,
  33566. feature.residues,
  33567. feature.seqlen,
  33568. feature.md5checksum,
  33569. feature.type_id,
  33570. feature.is_analysis,
  33571. feature.is_obsolete,
  33572. feature.timeaccessioned,
  33573. feature.timelastmodified
  33574. FROM (feature
  33575. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33576. WHERE ((((cvterm.name)::text = 'recombinationally_inverted_gene'::text) OR ((cvterm.name)::text = 'recombinationally_rearranged_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'recombinationally_rearranged_gene'::text));
  33577. --
  33578. -- Name: recombinationally_rearranged_vertebrate_immune_system_gene; Type: VIEW; Schema: so; Owner: -
  33579. --
  33580. CREATE VIEW recombinationally_rearranged_vertebrate_immune_system_gene AS
  33581. SELECT feature.feature_id AS recombinationally_rearranged_vertebrate_immune_system_gene_id,
  33582. feature.feature_id,
  33583. feature.dbxref_id,
  33584. feature.organism_id,
  33585. feature.name,
  33586. feature.uniquename,
  33587. feature.residues,
  33588. feature.seqlen,
  33589. feature.md5checksum,
  33590. feature.type_id,
  33591. feature.is_analysis,
  33592. feature.is_obsolete,
  33593. feature.timeaccessioned,
  33594. feature.timelastmodified
  33595. FROM (feature
  33596. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33597. WHERE ((cvterm.name)::text = 'recombinationally_rearranged_vertebrate_immune_system_gene'::text);
  33598. --
  33599. -- Name: recursive_splice_site; Type: VIEW; Schema: so; Owner: -
  33600. --
  33601. CREATE VIEW recursive_splice_site AS
  33602. SELECT feature.feature_id AS recursive_splice_site_id,
  33603. feature.feature_id,
  33604. feature.dbxref_id,
  33605. feature.organism_id,
  33606. feature.name,
  33607. feature.uniquename,
  33608. feature.residues,
  33609. feature.seqlen,
  33610. feature.md5checksum,
  33611. feature.type_id,
  33612. feature.is_analysis,
  33613. feature.is_obsolete,
  33614. feature.timeaccessioned,
  33615. feature.timelastmodified
  33616. FROM (feature
  33617. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33618. WHERE ((cvterm.name)::text = 'recursive_splice_site'::text);
  33619. --
  33620. -- Name: reference_genome; Type: VIEW; Schema: so; Owner: -
  33621. --
  33622. CREATE VIEW reference_genome AS
  33623. SELECT feature.feature_id AS reference_genome_id,
  33624. feature.feature_id,
  33625. feature.dbxref_id,
  33626. feature.organism_id,
  33627. feature.name,
  33628. feature.uniquename,
  33629. feature.residues,
  33630. feature.seqlen,
  33631. feature.md5checksum,
  33632. feature.type_id,
  33633. feature.is_analysis,
  33634. feature.is_obsolete,
  33635. feature.timeaccessioned,
  33636. feature.timelastmodified
  33637. FROM (feature
  33638. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33639. WHERE ((cvterm.name)::text = 'reference_genome'::text);
  33640. --
  33641. -- Name: region; Type: VIEW; Schema: so; Owner: -
  33642. --
  33643. CREATE VIEW region AS
  33644. SELECT feature.feature_id AS region_id,
  33645. feature.feature_id,
  33646. feature.dbxref_id,
  33647. feature.organism_id,
  33648. feature.name,
  33649. feature.uniquename,
  33650. feature.residues,
  33651. feature.seqlen,
  33652. feature.md5checksum,
  33653. feature.type_id,
  33654. feature.is_analysis,
  33655. feature.is_obsolete,
  33656. feature.timeaccessioned,
  33657. feature.timelastmodified
  33658. FROM (feature
  33659. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33660. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'biomaterial_region'::text) OR ((cvterm.name)::text = 'experimental_feature'::text)) OR ((cvterm.name)::text = 'biological_region'::text)) OR ((cvterm.name)::text = 'topologically_defined_region'::text)) OR ((cvterm.name)::text = 'reagent'::text)) OR ((cvterm.name)::text = 'engineered_region'::text)) OR ((cvterm.name)::text = 'PCR_product'::text)) OR ((cvterm.name)::text = 'clone'::text)) OR ((cvterm.name)::text = 'rescue_region'::text)) OR ((cvterm.name)::text = 'oligo'::text)) OR ((cvterm.name)::text = 'clone_insert'::text)) OR ((cvterm.name)::text = 'cloned_region'::text)) OR ((cvterm.name)::text = 'databank_entry'::text)) OR ((cvterm.name)::text = 'RAPD'::text)) OR ((cvterm.name)::text = 'genomic_clone'::text)) OR ((cvterm.name)::text = 'cDNA_clone'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'validated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'invalidated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'three_prime_RACE_clone'::text)) OR ((cvterm.name)::text = 'chimeric_cDNA_clone'::text)) OR ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'aptamer'::text)) OR ((cvterm.name)::text = 'probe'::text)) OR ((cvterm.name)::text = 'tag'::text)) OR ((cvterm.name)::text = 'ss_oligo'::text)) OR ((cvterm.name)::text = 'ds_oligo'::text)) OR ((cvterm.name)::text = 'DNAzyme'::text)) OR ((cvterm.name)::text = 'synthetic_oligo'::text)) OR ((cvterm.name)::text = 'DNA_aptamer'::text)) OR ((cvterm.name)::text = 'RNA_aptamer'::text)) OR ((cvterm.name)::text = 'microarray_oligo'::text)) OR ((cvterm.name)::text = 'SAGE_tag'::text)) OR ((cvterm.name)::text = 'STS'::text)) OR ((cvterm.name)::text = 'EST'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'five_prime_EST'::text)) OR ((cvterm.name)::text = 'three_prime_EST'::text)) OR ((cvterm.name)::text = 'UST'::text)) OR ((cvterm.name)::text = 'RST'::text)) OR ((cvterm.name)::text = 'three_prime_UST'::text)) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'three_prime_RST'::text)) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'primer'::text)) OR ((cvterm.name)::text = 'sequencing_primer'::text)) OR ((cvterm.name)::text = 'forward_primer'::text)) OR ((cvterm.name)::text = 'reverse_primer'::text)) OR ((cvterm.name)::text = 'ASPE_primer'::text)) OR ((cvterm.name)::text = 'dCAPS_primer'::text)) OR ((cvterm.name)::text = 'RNAi_reagent'::text)) OR ((cvterm.name)::text = 'DNA_constraint_sequence'::text)) OR ((cvterm.name)::text = 'morpholino_oligo'::text)) OR ((cvterm.name)::text = 'PNA_oligo'::text)) OR ((cvterm.name)::text = 'LNA_oligo'::text)) OR ((cvterm.name)::text = 'TNA_oligo'::text)) OR ((cvterm.name)::text = 'GNA_oligo'::text)) OR ((cvterm.name)::text = 'R_GNA_oligo'::text)) OR ((cvterm.name)::text = 'S_GNA_oligo'::text)) OR ((cvterm.name)::text = 'cloned_cDNA_insert'::text)) OR ((cvterm.name)::text = 'cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'BAC_cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_gene'::text)) OR ((cvterm.name)::text = 'engineered_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_region'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_fusion_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'match_part'::text)) OR ((cvterm.name)::text = 'assembly_component'::text)) OR ((cvterm.name)::text = 'conserved_region'::text)) OR ((cvterm.name)::text = 'match'::text)) OR ((cvterm.name)::text = 'remark'::text)) OR ((cvterm.name)::text = 'reading_frame'::text)) OR ((cvterm.name)::text = 'consensus_region'::text)) OR ((cvterm.name)::text = 'low_complexity_region'::text)) OR ((cvterm.name)::text = 'assembly'::text)) OR ((cvterm.name)::text = 'transcribed_fragment'::text)) OR ((cvterm.name)::text = 'transcribed_cluster'::text)) OR ((cvterm.name)::text = 'high_identity_region'::text)) OR ((cvterm.name)::text = 'mathematically_defined_repeat'::text)) OR ((cvterm.name)::text = 'experimentally_defined_binding_region'::text)) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'read'::text)) OR ((cvterm.name)::text = 'restriction_fragment'::text)) OR ((cvterm.name)::text = 'golden_path_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_fragment'::text)) OR ((cvterm.name)::text = 'gap'::text)) OR ((cvterm.name)::text = 'sonicate_fragment'::text)) OR ((cvterm.name)::text = 'paired_end_fragment'::text)) OR ((cvterm.name)::text = 'read_pair'::text)) OR ((cvterm.name)::text = 'contig_read'::text)) OR ((cvterm.name)::text = 'BAC_end'::text)) OR ((cvterm.name)::text = 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((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'prophage'::text)) OR ((cvterm.name)::text = 'pathogenic_island'::text)) OR ((cvterm.name)::text = 'metabolic_island'::text)) OR ((cvterm.name)::text = 'adaptive_island'::text)) OR ((cvterm.name)::text = 'symbiosis_island'::text)) OR ((cvterm.name)::text = 'cryptic_prophage'::text)) OR ((cvterm.name)::text = 'defective_conjugative_transposon'::text)) OR ((cvterm.name)::text = 'plasmid'::text)) OR ((cvterm.name)::text = 'chromosome'::text)) OR ((cvterm.name)::text = 'vector_replicon'::text)) OR ((cvterm.name)::text = 'maxicircle'::text)) OR ((cvterm.name)::text = 'minicircle'::text)) OR ((cvterm.name)::text = 'viral_sequence'::text)) OR ((cvterm.name)::text = 'engineered_plasmid'::text)) OR ((cvterm.name)::text = 'episome'::text)) OR ((cvterm.name)::text = 'natural_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'mitochondrial_chromosome'::text)) OR ((cvterm.name)::text = 'chloroplast_chromosome'::text)) OR ((cvterm.name)::text = 'chromoplast_chromosome'::text)) OR ((cvterm.name)::text = 'cyanelle_chromosome'::text)) OR ((cvterm.name)::text = 'leucoplast_chromosome'::text)) OR ((cvterm.name)::text = 'macronuclear_chromosome'::text)) OR ((cvterm.name)::text = 'micronuclear_chromosome'::text)) OR ((cvterm.name)::text = 'nuclear_chromosome'::text)) OR ((cvterm.name)::text = 'nucleomorphic_chromosome'::text)) OR ((cvterm.name)::text = 'DNA_chromosome'::text)) OR ((cvterm.name)::text = 'RNA_chromosome'::text)) OR ((cvterm.name)::text = 'apicoplast_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'YAC'::text)) OR ((cvterm.name)::text = 'BAC'::text)) OR ((cvterm.name)::text = 'PAC'::text)) OR ((cvterm.name)::text = 'cosmid'::text)) OR ((cvterm.name)::text = 'phagemid'::text)) OR ((cvterm.name)::text = 'fosmid'::text)) OR ((cvterm.name)::text = 'lambda_vector'::text)) OR ((cvterm.name)::text = 'plasmid_vector'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'phage_sequence'::text)) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'modified_RNA_base_feature'::text)) OR ((cvterm.name)::text = 'inosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanine'::text)) OR ((cvterm.name)::text = 'ribothymidine'::text)) OR ((cvterm.name)::text = 'modified_adenosine'::text)) OR ((cvterm.name)::text = 'modified_cytidine'::text)) OR ((cvterm.name)::text = 'modified_guanosine'::text)) OR ((cvterm.name)::text = 'modified_uridine'::text)) OR ((cvterm.name)::text = 'modified_inosine'::text)) OR ((cvterm.name)::text = 'methylinosine'::text)) OR ((cvterm.name)::text = 'one_methylinosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylinosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylinosine'::text)) OR ((cvterm.name)::text = 'one_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'N6_glycinylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_threonyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyl_N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_hydroxynorvalylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosyladenosine_phosphate'::text)) OR ((cvterm.name)::text = 'N6_N6_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_2_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_N6_2_prime_O_trimethyladenosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_acetyladenosine'::text)) OR ((cvterm.name)::text = 'three_methylcytidine'::text)) OR ((cvterm.name)::text = 'five_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_thiocytidine'::text)) OR ((cvterm.name)::text = 'N4_acetylcytidine'::text)) OR ((cvterm.name)::text = 'five_formylcytidine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'N4_acetyl_2_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'lysidine'::text)) OR ((cvterm.name)::text = 'N4_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_2_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'five_hydroxymethylcytidine'::text)) OR ((cvterm.name)::text = 'five_formyl_two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_N4_2_prime_O_trimethylcytidine'::text)) OR ((cvterm.name)::text = 'seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'one_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_methylguanosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_2_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_2_prime_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosylguanosine_phosphate'::text)) OR ((cvterm.name)::text = 'wybutosine'::text)) OR ((cvterm.name)::text = 'peroxywybutosine'::text)) OR ((cvterm.name)::text = 'hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'undermodified_hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'wyosine'::text)) OR ((cvterm.name)::text = 'methylwyosine'::text)) OR ((cvterm.name)::text = 'N2_7_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_7_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'four_demethylwyosine'::text)) OR ((cvterm.name)::text = 'isowyosine'::text)) OR ((cvterm.name)::text = 'N2_7_2prirme_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'queuosine'::text)) OR ((cvterm.name)::text = 'epoxyqueuosine'::text)) OR ((cvterm.name)::text = 'galactosyl_queuosine'::text)) OR ((cvterm.name)::text = 'mannosyl_queuosine'::text)) OR ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'archaeosine'::text)) OR ((cvterm.name)::text = 'dihydrouridine'::text)) OR ((cvterm.name)::text = 'pseudouridine'::text)) OR ((cvterm.name)::text = 'five_methyluridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'one_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_thiouridine'::text)) OR ((cvterm.name)::text = 'four_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methyl_2_thiouridine'::text)) OR ((cvterm.name)::text = 'two_thio_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'three_three_amino_three_carboxypropyl_uridine'::text)) OR ((cvterm.name)::text = 'five_hydroxyuridine'::text)) OR ((cvterm.name)::text = 'five_methoxyuridine'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_aminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_selenouridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'three_methyluridine'::text)) OR ((cvterm.name)::text = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethyluridine'::text)) OR ((cvterm.name)::text = 'three_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'five_methyldihydrouridine'::text)) OR ((cvterm.name)::text = 'three_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyluridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'catalytic_residue'::text)) OR ((cvterm.name)::text = 'modified_amino_acid_feature'::text)) OR ((cvterm.name)::text = 'alanine'::text)) OR ((cvterm.name)::text = 'valine'::text)) OR ((cvterm.name)::text = 'leucine'::text)) OR ((cvterm.name)::text = 'isoleucine'::text)) OR ((cvterm.name)::text = 'proline'::text)) OR ((cvterm.name)::text = 'tryptophan'::text)) OR ((cvterm.name)::text = 'phenylalanine'::text)) OR ((cvterm.name)::text = 'methionine'::text)) OR ((cvterm.name)::text = 'glycine'::text)) OR ((cvterm.name)::text = 'serine'::text)) OR ((cvterm.name)::text = 'threonine'::text)) OR ((cvterm.name)::text = 'tyrosine'::text)) OR ((cvterm.name)::text = 'cysteine'::text)) OR ((cvterm.name)::text = 'glutamine'::text)) OR ((cvterm.name)::text = 'asparagine'::text)) OR ((cvterm.name)::text = 'lysine'::text)) OR ((cvterm.name)::text = 'arginine'::text)) OR ((cvterm.name)::text = 'histidine'::text)) OR ((cvterm.name)::text = 'aspartic_acid'::text)) OR ((cvterm.name)::text = 'glutamic_acid'::text)) OR ((cvterm.name)::text = 'selenocysteine'::text)) OR ((cvterm.name)::text = 'pyrrolysine'::text)) OR ((cvterm.name)::text = 'modified_glycine'::text)) OR ((cvterm.name)::text = 'modified_L_alanine'::text)) OR ((cvterm.name)::text = 'modified_L_asparagine'::text)) OR ((cvterm.name)::text = 'modified_L_aspartic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_cysteine'::text)) OR ((cvterm.name)::text = 'modified_L_glutamic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_threonine'::text)) OR ((cvterm.name)::text = 'modified_L_tryptophan'::text)) OR ((cvterm.name)::text = 'modified_L_glutamine'::text)) OR ((cvterm.name)::text = 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'CAAT_signal'::text)) OR ((cvterm.name)::text = 'minus_10_signal'::text)) OR ((cvterm.name)::text = 'minus_35_signal'::text)) OR ((cvterm.name)::text = 'DRE_motif'::text)) OR ((cvterm.name)::text = 'E_box_motif'::text)) OR ((cvterm.name)::text = 'INR1_motif'::text)) OR ((cvterm.name)::text = 'GAGA_motif'::text)) OR ((cvterm.name)::text = 'octamer_motif'::text)) OR ((cvterm.name)::text = 'retinoic_acid_responsive_element'::text)) OR ((cvterm.name)::text = 'promoter_element'::text)) OR ((cvterm.name)::text = 'DCE_SI'::text)) OR ((cvterm.name)::text = 'DCE_SII'::text)) OR ((cvterm.name)::text = 'DCE_SIII'::text)) OR ((cvterm.name)::text = 'minus_12_signal'::text)) OR ((cvterm.name)::text = 'minus_24_signal'::text)) OR ((cvterm.name)::text = 'GC_rich_promoter_region'::text)) OR ((cvterm.name)::text = 'DMv4_motif'::text)) OR ((cvterm.name)::text = 'DMv5_motif'::text)) OR ((cvterm.name)::text = 'DMv3_motif'::text)) OR ((cvterm.name)::text = 'DMv2_motif'::text)) OR ((cvterm.name)::text = 'DPE1_motif'::text)) OR ((cvterm.name)::text = 'DMv1_motif'::text)) OR ((cvterm.name)::text = 'NDM2_motif'::text)) OR ((cvterm.name)::text = 'NDM3_motif'::text)) OR ((cvterm.name)::text = 'core_promoter_element'::text)) OR ((cvterm.name)::text = 'regulatory_promoter_element'::text)) OR ((cvterm.name)::text = 'INR_motif'::text)) OR ((cvterm.name)::text = 'DPE_motif'::text)) OR ((cvterm.name)::text = 'BREu_motif'::text)) OR ((cvterm.name)::text = 'TATA_box'::text)) OR ((cvterm.name)::text = 'A_box'::text)) OR ((cvterm.name)::text = 'B_box'::text)) OR ((cvterm.name)::text = 'C_box'::text)) OR ((cvterm.name)::text = 'MTE'::text)) OR ((cvterm.name)::text = 'BREd_motif'::text)) OR ((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'proximal_promoter_element'::text)) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'A_minor_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_junction_loop'::text)) OR ((cvterm.name)::text = 'hammerhead_ribozyme'::text)) OR ((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'K_turn_RNA_motif'::text)) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_hook_turn'::text)) OR ((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'sticky_end_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'modified_base'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_gene'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR ((cvterm.name)::text = 'methylated_base_feature'::text)) OR ((cvterm.name)::text = 'methylated_C'::text)) OR ((cvterm.name)::text = 'methylated_A'::text)) OR ((cvterm.name)::text = 'gene_rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'paternally_imprinted_gene'::text)) OR ((cvterm.name)::text = 'allelically_excluded_gene'::text)) OR ((cvterm.name)::text = 'histone_methylation_site'::text)) OR ((cvterm.name)::text = 'histone_acetylation_site'::text)) OR ((cvterm.name)::text = 'histone_ubiqitination_site'::text)) OR ((cvterm.name)::text = 'histone_acylation_region'::text)) OR ((cvterm.name)::text = 'H4K20_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H2BK5_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K14_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K18_acetylation_site'::text)) OR ((cvterm.name)::text = 'H3K23_acylation site'::text)) OR ((cvterm.name)::text = 'H3K27_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K16_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K5_acylation_site'::text)) OR ((cvterm.name)::text = 'H4K8_acylation site'::text)) OR ((cvterm.name)::text = 'H2B_ubiquitination_site'::text)) OR ((cvterm.name)::text = 'H4K_acylation_region'::text)) OR ((cvterm.name)::text = 'operon'::text)) OR ((cvterm.name)::text = 'mating_type_region'::text)) OR ((cvterm.name)::text = 'gene_array'::text)) OR ((cvterm.name)::text = 'gene_subarray'::text)) OR ((cvterm.name)::text = 'gene_cassette_array'::text)) OR ((cvterm.name)::text = 'regulon'::text)) OR ((cvterm.name)::text = 'sequence_length_variation'::text)) OR ((cvterm.name)::text = 'MNP'::text)) OR ((cvterm.name)::text = 'SNV'::text)) OR ((cvterm.name)::text = 'complex_substitution'::text)) OR ((cvterm.name)::text = 'simple_sequence_length_variation'::text)) OR ((cvterm.name)::text = 'SNP'::text)) OR ((cvterm.name)::text = 'point_mutation'::text)) OR ((cvterm.name)::text = 'transition'::text)) OR ((cvterm.name)::text = 'transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'flanking_region'::text)) OR ((cvterm.name)::text = 'repeat_component'::text)) OR ((cvterm.name)::text = 'transposable_element_flanking_region'::text)) OR ((cvterm.name)::text = 'five_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'three_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon_polymeric_tract'::text)) OR ((cvterm.name)::text = 'LTR_component'::text)) OR ((cvterm.name)::text = 'repeat_fragment'::text)) OR ((cvterm.name)::text = 'transposon_fragment'::text)) OR ((cvterm.name)::text = 'U5_LTR_region'::text)) OR ((cvterm.name)::text = 'R_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_LTR_region'::text)) OR ((cvterm.name)::text = 'three_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'five_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'region'::text));
  33661. --
  33662. -- Name: regional_centromere; Type: VIEW; Schema: so; Owner: -
  33663. --
  33664. CREATE VIEW regional_centromere AS
  33665. SELECT feature.feature_id AS regional_centromere_id,
  33666. feature.feature_id,
  33667. feature.dbxref_id,
  33668. feature.organism_id,
  33669. feature.name,
  33670. feature.uniquename,
  33671. feature.residues,
  33672. feature.seqlen,
  33673. feature.md5checksum,
  33674. feature.type_id,
  33675. feature.is_analysis,
  33676. feature.is_obsolete,
  33677. feature.timeaccessioned,
  33678. feature.timelastmodified
  33679. FROM (feature
  33680. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33681. WHERE ((cvterm.name)::text = 'regional_centromere'::text);
  33682. --
  33683. -- Name: regional_centromere_central_core; Type: VIEW; Schema: so; Owner: -
  33684. --
  33685. CREATE VIEW regional_centromere_central_core AS
  33686. SELECT feature.feature_id AS regional_centromere_central_core_id,
  33687. feature.feature_id,
  33688. feature.dbxref_id,
  33689. feature.organism_id,
  33690. feature.name,
  33691. feature.uniquename,
  33692. feature.residues,
  33693. feature.seqlen,
  33694. feature.md5checksum,
  33695. feature.type_id,
  33696. feature.is_analysis,
  33697. feature.is_obsolete,
  33698. feature.timeaccessioned,
  33699. feature.timelastmodified
  33700. FROM (feature
  33701. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33702. WHERE ((cvterm.name)::text = 'regional_centromere_central_core'::text);
  33703. --
  33704. -- Name: regional_centromere_inner_repeat_region; Type: VIEW; Schema: so; Owner: -
  33705. --
  33706. CREATE VIEW regional_centromere_inner_repeat_region AS
  33707. SELECT feature.feature_id AS regional_centromere_inner_repeat_region_id,
  33708. feature.feature_id,
  33709. feature.dbxref_id,
  33710. feature.organism_id,
  33711. feature.name,
  33712. feature.uniquename,
  33713. feature.residues,
  33714. feature.seqlen,
  33715. feature.md5checksum,
  33716. feature.type_id,
  33717. feature.is_analysis,
  33718. feature.is_obsolete,
  33719. feature.timeaccessioned,
  33720. feature.timelastmodified
  33721. FROM (feature
  33722. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33723. WHERE ((cvterm.name)::text = 'regional_centromere_inner_repeat_region'::text);
  33724. --
  33725. -- Name: regional_centromere_outer_repeat_region; Type: VIEW; Schema: so; Owner: -
  33726. --
  33727. CREATE VIEW regional_centromere_outer_repeat_region AS
  33728. SELECT feature.feature_id AS regional_centromere_outer_repeat_region_id,
  33729. feature.feature_id,
  33730. feature.dbxref_id,
  33731. feature.organism_id,
  33732. feature.name,
  33733. feature.uniquename,
  33734. feature.residues,
  33735. feature.seqlen,
  33736. feature.md5checksum,
  33737. feature.type_id,
  33738. feature.is_analysis,
  33739. feature.is_obsolete,
  33740. feature.timeaccessioned,
  33741. feature.timelastmodified
  33742. FROM (feature
  33743. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33744. WHERE ((cvterm.name)::text = 'regional_centromere_outer_repeat_region'::text);
  33745. --
  33746. -- Name: regulated; Type: VIEW; Schema: so; Owner: -
  33747. --
  33748. CREATE VIEW regulated AS
  33749. SELECT feature.feature_id AS regulated_id,
  33750. feature.feature_id,
  33751. feature.dbxref_id,
  33752. feature.organism_id,
  33753. feature.name,
  33754. feature.uniquename,
  33755. feature.residues,
  33756. feature.seqlen,
  33757. feature.md5checksum,
  33758. feature.type_id,
  33759. feature.is_analysis,
  33760. feature.is_obsolete,
  33761. feature.timeaccessioned,
  33762. feature.timelastmodified
  33763. FROM (feature
  33764. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33765. WHERE (((((((((((((((((((((((((cvterm.name)::text = 'transcriptionally_regulated'::text) OR ((cvterm.name)::text = 'post_translationally_regulated'::text)) OR ((cvterm.name)::text = 'translationally_regulated'::text)) OR ((cvterm.name)::text = 'imprinted'::text)) OR ((cvterm.name)::text = 'transcriptionally_constitutive'::text)) OR ((cvterm.name)::text = 'transcriptionally_induced'::text)) OR ((cvterm.name)::text = 'transcriptionally_repressed'::text)) OR ((cvterm.name)::text = 'autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'silenced'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_stability'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_modification'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'regulated'::text));
  33766. --
  33767. -- Name: regulatory_promoter_element; Type: VIEW; Schema: so; Owner: -
  33768. --
  33769. CREATE VIEW regulatory_promoter_element AS
  33770. SELECT feature.feature_id AS regulatory_promoter_element_id,
  33771. feature.feature_id,
  33772. feature.dbxref_id,
  33773. feature.organism_id,
  33774. feature.name,
  33775. feature.uniquename,
  33776. feature.residues,
  33777. feature.seqlen,
  33778. feature.md5checksum,
  33779. feature.type_id,
  33780. feature.is_analysis,
  33781. feature.is_obsolete,
  33782. feature.timeaccessioned,
  33783. feature.timelastmodified
  33784. FROM (feature
  33785. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33786. WHERE ((((cvterm.name)::text = 'proximal_promoter_element'::text) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'regulatory_promoter_element'::text));
  33787. --
  33788. -- Name: regulatory_region; Type: VIEW; Schema: so; Owner: -
  33789. --
  33790. CREATE VIEW regulatory_region AS
  33791. SELECT feature.feature_id AS regulatory_region_id,
  33792. feature.feature_id,
  33793. feature.dbxref_id,
  33794. feature.organism_id,
  33795. feature.name,
  33796. feature.uniquename,
  33797. feature.residues,
  33798. feature.seqlen,
  33799. feature.md5checksum,
  33800. feature.type_id,
  33801. feature.is_analysis,
  33802. feature.is_obsolete,
  33803. feature.timeaccessioned,
  33804. feature.timelastmodified
  33805. FROM (feature
  33806. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33807. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'transcription_regulatory_region'::text) OR ((cvterm.name)::text = 'translation_regulatory_region'::text)) OR ((cvterm.name)::text = 'recombination_regulatory_region'::text)) OR ((cvterm.name)::text = 'replication_regulatory_region'::text)) OR ((cvterm.name)::text = 'terminator'::text)) OR ((cvterm.name)::text = 'TF_binding_site'::text)) OR ((cvterm.name)::text = 'polyA_signal_sequence'::text)) OR ((cvterm.name)::text = 'gene_group_regulatory_region'::text)) OR ((cvterm.name)::text = 'transcriptional_cis_regulatory_region'::text)) OR ((cvterm.name)::text = 'splicing_regulatory_region'::text)) OR ((cvterm.name)::text = 'cis_regulatory_frameshift_element'::text)) OR ((cvterm.name)::text = 'intronic_regulatory_region'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text)) OR ((cvterm.name)::text = 'eukaryotic_terminator'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'terminator_of_type_2_RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'operator'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'promoter'::text)) OR ((cvterm.name)::text = 'insulator'::text)) OR ((cvterm.name)::text = 'CRM'::text)) OR ((cvterm.name)::text = 'promoter_targeting_sequence'::text)) OR ((cvterm.name)::text = 'ISRE'::text)) OR ((cvterm.name)::text = 'bidirectional_promoter'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_I_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'Phage_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_core_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'locus_control_region'::text)) OR ((cvterm.name)::text = 'enhancer'::text)) OR ((cvterm.name)::text = 'silencer'::text)) OR ((cvterm.name)::text = 'enhancer_bound_by_factor'::text)) OR ((cvterm.name)::text = 'shadow_enhancer'::text)) OR ((cvterm.name)::text = 'splice_enhancer'::text)) OR ((cvterm.name)::text = 'intronic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'exonic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'attenuator'::text)) OR ((cvterm.name)::text = 'regulatory_region'::text));
  33808. --
  33809. -- Name: regulatory_region_variant; Type: VIEW; Schema: so; Owner: -
  33810. --
  33811. CREATE VIEW regulatory_region_variant AS
  33812. SELECT feature.feature_id AS regulatory_region_variant_id,
  33813. feature.feature_id,
  33814. feature.dbxref_id,
  33815. feature.organism_id,
  33816. feature.name,
  33817. feature.uniquename,
  33818. feature.residues,
  33819. feature.seqlen,
  33820. feature.md5checksum,
  33821. feature.type_id,
  33822. feature.is_analysis,
  33823. feature.is_obsolete,
  33824. feature.timeaccessioned,
  33825. feature.timelastmodified
  33826. FROM (feature
  33827. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33828. WHERE (((cvterm.name)::text = 'TF_binding_site_variant'::text) OR ((cvterm.name)::text = 'regulatory_region_variant'::text));
  33829. --
  33830. -- Name: regulon; Type: VIEW; Schema: so; Owner: -
  33831. --
  33832. CREATE VIEW regulon AS
  33833. SELECT feature.feature_id AS regulon_id,
  33834. feature.feature_id,
  33835. feature.dbxref_id,
  33836. feature.organism_id,
  33837. feature.name,
  33838. feature.uniquename,
  33839. feature.residues,
  33840. feature.seqlen,
  33841. feature.md5checksum,
  33842. feature.type_id,
  33843. feature.is_analysis,
  33844. feature.is_obsolete,
  33845. feature.timeaccessioned,
  33846. feature.timelastmodified
  33847. FROM (feature
  33848. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33849. WHERE ((cvterm.name)::text = 'regulon'::text);
  33850. --
  33851. -- Name: remark; Type: VIEW; Schema: so; Owner: -
  33852. --
  33853. CREATE VIEW remark AS
  33854. SELECT feature.feature_id AS remark_id,
  33855. feature.feature_id,
  33856. feature.dbxref_id,
  33857. feature.organism_id,
  33858. feature.name,
  33859. feature.uniquename,
  33860. feature.residues,
  33861. feature.seqlen,
  33862. feature.md5checksum,
  33863. feature.type_id,
  33864. feature.is_analysis,
  33865. feature.is_obsolete,
  33866. feature.timeaccessioned,
  33867. feature.timelastmodified
  33868. FROM (feature
  33869. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33870. WHERE (((((((((((((((((cvterm.name)::text = 'sequence_difference'::text) OR ((cvterm.name)::text = 'experimental_result_region'::text)) OR ((cvterm.name)::text = 'polypeptide_sequencing_information'::text)) OR ((cvterm.name)::text = 'possible_base_call_error'::text)) OR ((cvterm.name)::text = 'possible_assembly_error'::text)) OR ((cvterm.name)::text = 'assembly_error_correction'::text)) OR ((cvterm.name)::text = 'base_call_error_correction'::text)) OR ((cvterm.name)::text = 'overlapping_feature_set'::text)) OR ((cvterm.name)::text = 'no_output'::text)) OR ((cvterm.name)::text = 'overlapping_EST_set'::text)) OR ((cvterm.name)::text = 'non_adjacent_residues'::text)) OR ((cvterm.name)::text = 'non_terminal_residue'::text)) OR ((cvterm.name)::text = 'sequence_conflict'::text)) OR ((cvterm.name)::text = 'sequence_uncertainty'::text)) OR ((cvterm.name)::text = 'contig_collection'::text)) OR ((cvterm.name)::text = 'remark'::text));
  33871. --
  33872. -- Name: repeat_component; Type: VIEW; Schema: so; Owner: -
  33873. --
  33874. CREATE VIEW repeat_component AS
  33875. SELECT feature.feature_id AS repeat_component_id,
  33876. feature.feature_id,
  33877. feature.dbxref_id,
  33878. feature.organism_id,
  33879. feature.name,
  33880. feature.uniquename,
  33881. feature.residues,
  33882. feature.seqlen,
  33883. feature.md5checksum,
  33884. feature.type_id,
  33885. feature.is_analysis,
  33886. feature.is_obsolete,
  33887. feature.timeaccessioned,
  33888. feature.timelastmodified
  33889. FROM (feature
  33890. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33891. WHERE ((((((((((((((((((((cvterm.name)::text = 'non_LTR_retrotransposon_polymeric_tract'::text) OR ((cvterm.name)::text = 'LTR_component'::text)) OR ((cvterm.name)::text = 'repeat_fragment'::text)) OR ((cvterm.name)::text = 'transposon_fragment'::text)) OR ((cvterm.name)::text = 'U5_LTR_region'::text)) OR ((cvterm.name)::text = 'R_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_LTR_region'::text)) OR ((cvterm.name)::text = 'three_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'five_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'repeat_component'::text));
  33892. --
  33893. -- Name: repeat_fragment; Type: VIEW; Schema: so; Owner: -
  33894. --
  33895. CREATE VIEW repeat_fragment AS
  33896. SELECT feature.feature_id AS repeat_fragment_id,
  33897. feature.feature_id,
  33898. feature.dbxref_id,
  33899. feature.organism_id,
  33900. feature.name,
  33901. feature.uniquename,
  33902. feature.residues,
  33903. feature.seqlen,
  33904. feature.md5checksum,
  33905. feature.type_id,
  33906. feature.is_analysis,
  33907. feature.is_obsolete,
  33908. feature.timeaccessioned,
  33909. feature.timelastmodified
  33910. FROM (feature
  33911. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33912. WHERE ((cvterm.name)::text = 'repeat_fragment'::text);
  33913. --
  33914. -- Name: repeat_region; Type: VIEW; Schema: so; Owner: -
  33915. --
  33916. CREATE VIEW repeat_region AS
  33917. SELECT feature.feature_id AS repeat_region_id,
  33918. feature.feature_id,
  33919. feature.dbxref_id,
  33920. feature.organism_id,
  33921. feature.name,
  33922. feature.uniquename,
  33923. feature.residues,
  33924. feature.seqlen,
  33925. feature.md5checksum,
  33926. feature.type_id,
  33927. feature.is_analysis,
  33928. feature.is_obsolete,
  33929. feature.timeaccessioned,
  33930. feature.timelastmodified
  33931. FROM (feature
  33932. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33933. WHERE (((((((((((((((((((((((((((((((cvterm.name)::text = 'long_terminal_repeat'::text) OR ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text)) OR ((cvterm.name)::text = 'inverted_repeat'::text)) OR ((cvterm.name)::text = 'direct_repeat'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon_polymeric_tract'::text)) OR ((cvterm.name)::text = 'dispersed_repeat'::text)) OR ((cvterm.name)::text = 'tandem_repeat'::text)) OR ((cvterm.name)::text = 'X_element_combinatorial_repeat'::text)) OR ((cvterm.name)::text = 'Y_prime_element'::text)) OR ((cvterm.name)::text = 'telomeric_repeat'::text)) OR ((cvterm.name)::text = 'nested_repeat'::text)) OR ((cvterm.name)::text = 'centromeric_repeat'::text)) OR ((cvterm.name)::text = 'five_prime_LTR'::text)) OR ((cvterm.name)::text = 'three_prime_LTR'::text)) OR ((cvterm.name)::text = 'solo_LTR'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'five_prime_terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'three_prime_terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'target_site_duplication'::text)) OR ((cvterm.name)::text = 'CRISPR'::text)) OR ((cvterm.name)::text = 'satellite_DNA'::text)) OR ((cvterm.name)::text = 'microsatellite'::text)) OR ((cvterm.name)::text = 'minisatellite'::text)) OR ((cvterm.name)::text = 'dinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'trinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'tetranucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'nested_tandem_repeat'::text)) OR ((cvterm.name)::text = 'regional_centromere_inner_repeat_region'::text)) OR ((cvterm.name)::text = 'regional_centromere_outer_repeat_region'::text)) OR ((cvterm.name)::text = 'repeat_region'::text));
  33934. --
  33935. -- Name: repeat_unit; Type: VIEW; Schema: so; Owner: -
  33936. --
  33937. CREATE VIEW repeat_unit AS
  33938. SELECT feature.feature_id AS repeat_unit_id,
  33939. feature.feature_id,
  33940. feature.dbxref_id,
  33941. feature.organism_id,
  33942. feature.name,
  33943. feature.uniquename,
  33944. feature.residues,
  33945. feature.seqlen,
  33946. feature.md5checksum,
  33947. feature.type_id,
  33948. feature.is_analysis,
  33949. feature.is_obsolete,
  33950. feature.timeaccessioned,
  33951. feature.timelastmodified
  33952. FROM (feature
  33953. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33954. WHERE ((cvterm.name)::text = 'repeat_unit'::text);
  33955. --
  33956. -- Name: replication_regulatory_region; Type: VIEW; Schema: so; Owner: -
  33957. --
  33958. CREATE VIEW replication_regulatory_region AS
  33959. SELECT feature.feature_id AS replication_regulatory_region_id,
  33960. feature.feature_id,
  33961. feature.dbxref_id,
  33962. feature.organism_id,
  33963. feature.name,
  33964. feature.uniquename,
  33965. feature.residues,
  33966. feature.seqlen,
  33967. feature.md5checksum,
  33968. feature.type_id,
  33969. feature.is_analysis,
  33970. feature.is_obsolete,
  33971. feature.timeaccessioned,
  33972. feature.timelastmodified
  33973. FROM (feature
  33974. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33975. WHERE ((cvterm.name)::text = 'replication_regulatory_region'::text);
  33976. --
  33977. -- Name: replicon; Type: VIEW; Schema: so; Owner: -
  33978. --
  33979. CREATE VIEW replicon AS
  33980. SELECT feature.feature_id AS replicon_id,
  33981. feature.feature_id,
  33982. feature.dbxref_id,
  33983. feature.organism_id,
  33984. feature.name,
  33985. feature.uniquename,
  33986. feature.residues,
  33987. feature.seqlen,
  33988. feature.md5checksum,
  33989. feature.type_id,
  33990. feature.is_analysis,
  33991. feature.is_obsolete,
  33992. feature.timeaccessioned,
  33993. feature.timelastmodified
  33994. FROM (feature
  33995. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  33996. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'plasmid'::text) OR ((cvterm.name)::text = 'chromosome'::text)) OR ((cvterm.name)::text = 'vector_replicon'::text)) OR ((cvterm.name)::text = 'maxicircle'::text)) OR ((cvterm.name)::text = 'minicircle'::text)) OR ((cvterm.name)::text = 'viral_sequence'::text)) OR ((cvterm.name)::text = 'engineered_plasmid'::text)) OR ((cvterm.name)::text = 'episome'::text)) OR ((cvterm.name)::text = 'natural_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'mitochondrial_chromosome'::text)) OR ((cvterm.name)::text = 'chloroplast_chromosome'::text)) OR ((cvterm.name)::text = 'chromoplast_chromosome'::text)) OR ((cvterm.name)::text = 'cyanelle_chromosome'::text)) OR ((cvterm.name)::text = 'leucoplast_chromosome'::text)) OR ((cvterm.name)::text = 'macronuclear_chromosome'::text)) OR ((cvterm.name)::text = 'micronuclear_chromosome'::text)) OR ((cvterm.name)::text = 'nuclear_chromosome'::text)) OR ((cvterm.name)::text = 'nucleomorphic_chromosome'::text)) OR ((cvterm.name)::text = 'DNA_chromosome'::text)) OR ((cvterm.name)::text = 'RNA_chromosome'::text)) OR ((cvterm.name)::text = 'apicoplast_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'YAC'::text)) OR ((cvterm.name)::text = 'BAC'::text)) OR ((cvterm.name)::text = 'PAC'::text)) OR ((cvterm.name)::text = 'cosmid'::text)) OR ((cvterm.name)::text = 'phagemid'::text)) OR ((cvterm.name)::text = 'fosmid'::text)) OR ((cvterm.name)::text = 'lambda_vector'::text)) OR ((cvterm.name)::text = 'plasmid_vector'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'phage_sequence'::text)) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'replicon'::text));
  33997. --
  33998. -- Name: rescue; Type: VIEW; Schema: so; Owner: -
  33999. --
  34000. CREATE VIEW rescue AS
  34001. SELECT feature.feature_id AS rescue_id,
  34002. feature.feature_id,
  34003. feature.dbxref_id,
  34004. feature.organism_id,
  34005. feature.name,
  34006. feature.uniquename,
  34007. feature.residues,
  34008. feature.seqlen,
  34009. feature.md5checksum,
  34010. feature.type_id,
  34011. feature.is_analysis,
  34012. feature.is_obsolete,
  34013. feature.timeaccessioned,
  34014. feature.timelastmodified
  34015. FROM (feature
  34016. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34017. WHERE ((cvterm.name)::text = 'rescue'::text);
  34018. --
  34019. -- Name: rescue_gene; Type: VIEW; Schema: so; Owner: -
  34020. --
  34021. CREATE VIEW rescue_gene AS
  34022. SELECT feature.feature_id AS rescue_gene_id,
  34023. feature.feature_id,
  34024. feature.dbxref_id,
  34025. feature.organism_id,
  34026. feature.name,
  34027. feature.uniquename,
  34028. feature.residues,
  34029. feature.seqlen,
  34030. feature.md5checksum,
  34031. feature.type_id,
  34032. feature.is_analysis,
  34033. feature.is_obsolete,
  34034. feature.timeaccessioned,
  34035. feature.timelastmodified
  34036. FROM (feature
  34037. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34038. WHERE (((cvterm.name)::text = 'wild_type_rescue_gene'::text) OR ((cvterm.name)::text = 'rescue_gene'::text));
  34039. --
  34040. -- Name: rescue_mini_gene; Type: VIEW; Schema: so; Owner: -
  34041. --
  34042. CREATE VIEW rescue_mini_gene AS
  34043. SELECT feature.feature_id AS rescue_mini_gene_id,
  34044. feature.feature_id,
  34045. feature.dbxref_id,
  34046. feature.organism_id,
  34047. feature.name,
  34048. feature.uniquename,
  34049. feature.residues,
  34050. feature.seqlen,
  34051. feature.md5checksum,
  34052. feature.type_id,
  34053. feature.is_analysis,
  34054. feature.is_obsolete,
  34055. feature.timeaccessioned,
  34056. feature.timelastmodified
  34057. FROM (feature
  34058. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34059. WHERE ((cvterm.name)::text = 'rescue_mini_gene'::text);
  34060. --
  34061. -- Name: rescue_region; Type: VIEW; Schema: so; Owner: -
  34062. --
  34063. CREATE VIEW rescue_region AS
  34064. SELECT feature.feature_id AS rescue_region_id,
  34065. feature.feature_id,
  34066. feature.dbxref_id,
  34067. feature.organism_id,
  34068. feature.name,
  34069. feature.uniquename,
  34070. feature.residues,
  34071. feature.seqlen,
  34072. feature.md5checksum,
  34073. feature.type_id,
  34074. feature.is_analysis,
  34075. feature.is_obsolete,
  34076. feature.timeaccessioned,
  34077. feature.timelastmodified
  34078. FROM (feature
  34079. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34080. WHERE (((cvterm.name)::text = 'engineered_rescue_region'::text) OR ((cvterm.name)::text = 'rescue_region'::text));
  34081. --
  34082. -- Name: resolution_site; Type: VIEW; Schema: so; Owner: -
  34083. --
  34084. CREATE VIEW resolution_site AS
  34085. SELECT feature.feature_id AS resolution_site_id,
  34086. feature.feature_id,
  34087. feature.dbxref_id,
  34088. feature.organism_id,
  34089. feature.name,
  34090. feature.uniquename,
  34091. feature.residues,
  34092. feature.seqlen,
  34093. feature.md5checksum,
  34094. feature.type_id,
  34095. feature.is_analysis,
  34096. feature.is_obsolete,
  34097. feature.timeaccessioned,
  34098. feature.timelastmodified
  34099. FROM (feature
  34100. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34101. WHERE ((((cvterm.name)::text = 'loxP_site'::text) OR ((cvterm.name)::text = 'dif_site'::text)) OR ((cvterm.name)::text = 'resolution_site'::text));
  34102. --
  34103. -- Name: restriction_enzyme_binding_site; Type: VIEW; Schema: so; Owner: -
  34104. --
  34105. CREATE VIEW restriction_enzyme_binding_site AS
  34106. SELECT feature.feature_id AS restriction_enzyme_binding_site_id,
  34107. feature.feature_id,
  34108. feature.dbxref_id,
  34109. feature.organism_id,
  34110. feature.name,
  34111. feature.uniquename,
  34112. feature.residues,
  34113. feature.seqlen,
  34114. feature.md5checksum,
  34115. feature.type_id,
  34116. feature.is_analysis,
  34117. feature.is_obsolete,
  34118. feature.timeaccessioned,
  34119. feature.timelastmodified
  34120. FROM (feature
  34121. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34122. WHERE ((cvterm.name)::text = 'restriction_enzyme_binding_site'::text);
  34123. --
  34124. -- Name: restriction_enzyme_cleavage_junction; Type: VIEW; Schema: so; Owner: -
  34125. --
  34126. CREATE VIEW restriction_enzyme_cleavage_junction AS
  34127. SELECT feature.feature_id AS restriction_enzyme_cleavage_junction_id,
  34128. feature.feature_id,
  34129. feature.dbxref_id,
  34130. feature.organism_id,
  34131. feature.name,
  34132. feature.uniquename,
  34133. feature.residues,
  34134. feature.seqlen,
  34135. feature.md5checksum,
  34136. feature.type_id,
  34137. feature.is_analysis,
  34138. feature.is_obsolete,
  34139. feature.timeaccessioned,
  34140. feature.timelastmodified
  34141. FROM (feature
  34142. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34143. WHERE ((((((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_junction'::text) OR ((cvterm.name)::text = 'single_strand_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'five_prime_restriction_enzyme_junction'::text)) OR ((cvterm.name)::text = 'three_prime_restriction_enzyme_junction'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_cleavage_junction'::text));
  34144. --
  34145. -- Name: restriction_enzyme_recognition_site; Type: VIEW; Schema: so; Owner: -
  34146. --
  34147. CREATE VIEW restriction_enzyme_recognition_site AS
  34148. SELECT feature.feature_id AS restriction_enzyme_recognition_site_id,
  34149. feature.feature_id,
  34150. feature.dbxref_id,
  34151. feature.organism_id,
  34152. feature.name,
  34153. feature.uniquename,
  34154. feature.residues,
  34155. feature.seqlen,
  34156. feature.md5checksum,
  34157. feature.type_id,
  34158. feature.is_analysis,
  34159. feature.is_obsolete,
  34160. feature.timeaccessioned,
  34161. feature.timelastmodified
  34162. FROM (feature
  34163. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34164. WHERE ((((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_site'::text) OR ((cvterm.name)::text = 'sticky_end_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_recognition_site'::text));
  34165. --
  34166. -- Name: restriction_enzyme_single_strand_overhang; Type: VIEW; Schema: so; Owner: -
  34167. --
  34168. CREATE VIEW restriction_enzyme_single_strand_overhang AS
  34169. SELECT feature.feature_id AS restriction_enzyme_single_strand_overhang_id,
  34170. feature.feature_id,
  34171. feature.dbxref_id,
  34172. feature.organism_id,
  34173. feature.name,
  34174. feature.uniquename,
  34175. feature.residues,
  34176. feature.seqlen,
  34177. feature.md5checksum,
  34178. feature.type_id,
  34179. feature.is_analysis,
  34180. feature.is_obsolete,
  34181. feature.timeaccessioned,
  34182. feature.timelastmodified
  34183. FROM (feature
  34184. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34185. WHERE ((cvterm.name)::text = 'restriction_enzyme_single_strand_overhang'::text);
  34186. --
  34187. -- Name: restriction_fragment; Type: VIEW; Schema: so; Owner: -
  34188. --
  34189. CREATE VIEW restriction_fragment AS
  34190. SELECT feature.feature_id AS restriction_fragment_id,
  34191. feature.feature_id,
  34192. feature.dbxref_id,
  34193. feature.organism_id,
  34194. feature.name,
  34195. feature.uniquename,
  34196. feature.residues,
  34197. feature.seqlen,
  34198. feature.md5checksum,
  34199. feature.type_id,
  34200. feature.is_analysis,
  34201. feature.is_obsolete,
  34202. feature.timeaccessioned,
  34203. feature.timelastmodified
  34204. FROM (feature
  34205. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34206. WHERE (((cvterm.name)::text = 'RFLP_fragment'::text) OR ((cvterm.name)::text = 'restriction_fragment'::text));
  34207. --
  34208. -- Name: retinoic_acid_responsive_element; Type: VIEW; Schema: so; Owner: -
  34209. --
  34210. CREATE VIEW retinoic_acid_responsive_element AS
  34211. SELECT feature.feature_id AS retinoic_acid_responsive_element_id,
  34212. feature.feature_id,
  34213. feature.dbxref_id,
  34214. feature.organism_id,
  34215. feature.name,
  34216. feature.uniquename,
  34217. feature.residues,
  34218. feature.seqlen,
  34219. feature.md5checksum,
  34220. feature.type_id,
  34221. feature.is_analysis,
  34222. feature.is_obsolete,
  34223. feature.timeaccessioned,
  34224. feature.timelastmodified
  34225. FROM (feature
  34226. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34227. WHERE ((cvterm.name)::text = 'retinoic_acid_responsive_element'::text);
  34228. --
  34229. -- Name: retrogene; Type: VIEW; Schema: so; Owner: -
  34230. --
  34231. CREATE VIEW retrogene AS
  34232. SELECT feature.feature_id AS retrogene_id,
  34233. feature.feature_id,
  34234. feature.dbxref_id,
  34235. feature.organism_id,
  34236. feature.name,
  34237. feature.uniquename,
  34238. feature.residues,
  34239. feature.seqlen,
  34240. feature.md5checksum,
  34241. feature.type_id,
  34242. feature.is_analysis,
  34243. feature.is_obsolete,
  34244. feature.timeaccessioned,
  34245. feature.timelastmodified
  34246. FROM (feature
  34247. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34248. WHERE ((cvterm.name)::text = 'retrogene'::text);
  34249. --
  34250. -- Name: retron; Type: VIEW; Schema: so; Owner: -
  34251. --
  34252. CREATE VIEW retron AS
  34253. SELECT feature.feature_id AS retron_id,
  34254. feature.feature_id,
  34255. feature.dbxref_id,
  34256. feature.organism_id,
  34257. feature.name,
  34258. feature.uniquename,
  34259. feature.residues,
  34260. feature.seqlen,
  34261. feature.md5checksum,
  34262. feature.type_id,
  34263. feature.is_analysis,
  34264. feature.is_obsolete,
  34265. feature.timeaccessioned,
  34266. feature.timelastmodified
  34267. FROM (feature
  34268. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34269. WHERE ((cvterm.name)::text = 'retron'::text);
  34270. --
  34271. -- Name: retrotransposed; Type: VIEW; Schema: so; Owner: -
  34272. --
  34273. CREATE VIEW retrotransposed AS
  34274. SELECT feature.feature_id AS retrotransposed_id,
  34275. feature.feature_id,
  34276. feature.dbxref_id,
  34277. feature.organism_id,
  34278. feature.name,
  34279. feature.uniquename,
  34280. feature.residues,
  34281. feature.seqlen,
  34282. feature.md5checksum,
  34283. feature.type_id,
  34284. feature.is_analysis,
  34285. feature.is_obsolete,
  34286. feature.timeaccessioned,
  34287. feature.timelastmodified
  34288. FROM (feature
  34289. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34290. WHERE ((cvterm.name)::text = 'retrotransposed'::text);
  34291. --
  34292. -- Name: retrotransposon; Type: VIEW; Schema: so; Owner: -
  34293. --
  34294. CREATE VIEW retrotransposon AS
  34295. SELECT feature.feature_id AS retrotransposon_id,
  34296. feature.feature_id,
  34297. feature.dbxref_id,
  34298. feature.organism_id,
  34299. feature.name,
  34300. feature.uniquename,
  34301. feature.residues,
  34302. feature.seqlen,
  34303. feature.md5checksum,
  34304. feature.type_id,
  34305. feature.is_analysis,
  34306. feature.is_obsolete,
  34307. feature.timeaccessioned,
  34308. feature.timelastmodified
  34309. FROM (feature
  34310. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34311. WHERE ((((((cvterm.name)::text = 'LTR_retrotransposon'::text) OR ((cvterm.name)::text = 'non_LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'LINE_element'::text)) OR ((cvterm.name)::text = 'SINE_element'::text)) OR ((cvterm.name)::text = 'retrotransposon'::text));
  34312. --
  34313. -- Name: reverse; Type: VIEW; Schema: so; Owner: -
  34314. --
  34315. CREATE VIEW reverse AS
  34316. SELECT feature.feature_id AS reverse_id,
  34317. feature.feature_id,
  34318. feature.dbxref_id,
  34319. feature.organism_id,
  34320. feature.name,
  34321. feature.uniquename,
  34322. feature.residues,
  34323. feature.seqlen,
  34324. feature.md5checksum,
  34325. feature.type_id,
  34326. feature.is_analysis,
  34327. feature.is_obsolete,
  34328. feature.timeaccessioned,
  34329. feature.timelastmodified
  34330. FROM (feature
  34331. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34332. WHERE ((cvterm.name)::text = 'reverse'::text);
  34333. --
  34334. -- Name: reverse_hoogsteen_base_pair; Type: VIEW; Schema: so; Owner: -
  34335. --
  34336. CREATE VIEW reverse_hoogsteen_base_pair AS
  34337. SELECT feature.feature_id AS reverse_hoogsteen_base_pair_id,
  34338. feature.feature_id,
  34339. feature.dbxref_id,
  34340. feature.organism_id,
  34341. feature.name,
  34342. feature.uniquename,
  34343. feature.residues,
  34344. feature.seqlen,
  34345. feature.md5checksum,
  34346. feature.type_id,
  34347. feature.is_analysis,
  34348. feature.is_obsolete,
  34349. feature.timeaccessioned,
  34350. feature.timelastmodified
  34351. FROM (feature
  34352. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34353. WHERE ((cvterm.name)::text = 'reverse_Hoogsteen_base_pair'::text);
  34354. --
  34355. -- Name: reverse_primer; Type: VIEW; Schema: so; Owner: -
  34356. --
  34357. CREATE VIEW reverse_primer AS
  34358. SELECT feature.feature_id AS reverse_primer_id,
  34359. feature.feature_id,
  34360. feature.dbxref_id,
  34361. feature.organism_id,
  34362. feature.name,
  34363. feature.uniquename,
  34364. feature.residues,
  34365. feature.seqlen,
  34366. feature.md5checksum,
  34367. feature.type_id,
  34368. feature.is_analysis,
  34369. feature.is_obsolete,
  34370. feature.timeaccessioned,
  34371. feature.timelastmodified
  34372. FROM (feature
  34373. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34374. WHERE ((cvterm.name)::text = 'reverse_primer'::text);
  34375. --
  34376. -- Name: rflp_fragment; Type: VIEW; Schema: so; Owner: -
  34377. --
  34378. CREATE VIEW rflp_fragment AS
  34379. SELECT feature.feature_id AS rflp_fragment_id,
  34380. feature.feature_id,
  34381. feature.dbxref_id,
  34382. feature.organism_id,
  34383. feature.name,
  34384. feature.uniquename,
  34385. feature.residues,
  34386. feature.seqlen,
  34387. feature.md5checksum,
  34388. feature.type_id,
  34389. feature.is_analysis,
  34390. feature.is_obsolete,
  34391. feature.timeaccessioned,
  34392. feature.timelastmodified
  34393. FROM (feature
  34394. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34395. WHERE ((cvterm.name)::text = 'RFLP_fragment'::text);
  34396. --
  34397. -- Name: rh_map; Type: VIEW; Schema: so; Owner: -
  34398. --
  34399. CREATE VIEW rh_map AS
  34400. SELECT feature.feature_id AS rh_map_id,
  34401. feature.feature_id,
  34402. feature.dbxref_id,
  34403. feature.organism_id,
  34404. feature.name,
  34405. feature.uniquename,
  34406. feature.residues,
  34407. feature.seqlen,
  34408. feature.md5checksum,
  34409. feature.type_id,
  34410. feature.is_analysis,
  34411. feature.is_obsolete,
  34412. feature.timeaccessioned,
  34413. feature.timelastmodified
  34414. FROM (feature
  34415. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34416. WHERE ((cvterm.name)::text = 'RH_map'::text);
  34417. --
  34418. -- Name: rho_dependent_bacterial_terminator; Type: VIEW; Schema: so; Owner: -
  34419. --
  34420. CREATE VIEW rho_dependent_bacterial_terminator AS
  34421. SELECT feature.feature_id AS rho_dependent_bacterial_terminator_id,
  34422. feature.feature_id,
  34423. feature.dbxref_id,
  34424. feature.organism_id,
  34425. feature.name,
  34426. feature.uniquename,
  34427. feature.residues,
  34428. feature.seqlen,
  34429. feature.md5checksum,
  34430. feature.type_id,
  34431. feature.is_analysis,
  34432. feature.is_obsolete,
  34433. feature.timeaccessioned,
  34434. feature.timelastmodified
  34435. FROM (feature
  34436. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34437. WHERE ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text);
  34438. --
  34439. -- Name: rho_independent_bacterial_terminator; Type: VIEW; Schema: so; Owner: -
  34440. --
  34441. CREATE VIEW rho_independent_bacterial_terminator AS
  34442. SELECT feature.feature_id AS rho_independent_bacterial_terminator_id,
  34443. feature.feature_id,
  34444. feature.dbxref_id,
  34445. feature.organism_id,
  34446. feature.name,
  34447. feature.uniquename,
  34448. feature.residues,
  34449. feature.seqlen,
  34450. feature.md5checksum,
  34451. feature.type_id,
  34452. feature.is_analysis,
  34453. feature.is_obsolete,
  34454. feature.timeaccessioned,
  34455. feature.timelastmodified
  34456. FROM (feature
  34457. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34458. WHERE ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text);
  34459. --
  34460. -- Name: ribosome_entry_site; Type: VIEW; Schema: so; Owner: -
  34461. --
  34462. CREATE VIEW ribosome_entry_site AS
  34463. SELECT feature.feature_id AS ribosome_entry_site_id,
  34464. feature.feature_id,
  34465. feature.dbxref_id,
  34466. feature.organism_id,
  34467. feature.name,
  34468. feature.uniquename,
  34469. feature.residues,
  34470. feature.seqlen,
  34471. feature.md5checksum,
  34472. feature.type_id,
  34473. feature.is_analysis,
  34474. feature.is_obsolete,
  34475. feature.timeaccessioned,
  34476. feature.timelastmodified
  34477. FROM (feature
  34478. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34479. WHERE ((((((cvterm.name)::text = 'internal_ribosome_entry_site'::text) OR ((cvterm.name)::text = 'Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'kozak_sequence'::text)) OR ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'ribosome_entry_site'::text));
  34480. --
  34481. -- Name: riboswitch; Type: VIEW; Schema: so; Owner: -
  34482. --
  34483. CREATE VIEW riboswitch AS
  34484. SELECT feature.feature_id AS riboswitch_id,
  34485. feature.feature_id,
  34486. feature.dbxref_id,
  34487. feature.organism_id,
  34488. feature.name,
  34489. feature.uniquename,
  34490. feature.residues,
  34491. feature.seqlen,
  34492. feature.md5checksum,
  34493. feature.type_id,
  34494. feature.is_analysis,
  34495. feature.is_obsolete,
  34496. feature.timeaccessioned,
  34497. feature.timelastmodified
  34498. FROM (feature
  34499. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34500. WHERE ((cvterm.name)::text = 'riboswitch'::text);
  34501. --
  34502. -- Name: ribothymidine; Type: VIEW; Schema: so; Owner: -
  34503. --
  34504. CREATE VIEW ribothymidine AS
  34505. SELECT feature.feature_id AS ribothymidine_id,
  34506. feature.feature_id,
  34507. feature.dbxref_id,
  34508. feature.organism_id,
  34509. feature.name,
  34510. feature.uniquename,
  34511. feature.residues,
  34512. feature.seqlen,
  34513. feature.md5checksum,
  34514. feature.type_id,
  34515. feature.is_analysis,
  34516. feature.is_obsolete,
  34517. feature.timeaccessioned,
  34518. feature.timelastmodified
  34519. FROM (feature
  34520. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34521. WHERE ((cvterm.name)::text = 'ribothymidine'::text);
  34522. --
  34523. -- Name: ribozyme; Type: VIEW; Schema: so; Owner: -
  34524. --
  34525. CREATE VIEW ribozyme AS
  34526. SELECT feature.feature_id AS ribozyme_id,
  34527. feature.feature_id,
  34528. feature.dbxref_id,
  34529. feature.organism_id,
  34530. feature.name,
  34531. feature.uniquename,
  34532. feature.residues,
  34533. feature.seqlen,
  34534. feature.md5checksum,
  34535. feature.type_id,
  34536. feature.is_analysis,
  34537. feature.is_obsolete,
  34538. feature.timeaccessioned,
  34539. feature.timelastmodified
  34540. FROM (feature
  34541. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34542. WHERE ((cvterm.name)::text = 'ribozyme'::text);
  34543. --
  34544. -- Name: ribozymic; Type: VIEW; Schema: so; Owner: -
  34545. --
  34546. CREATE VIEW ribozymic AS
  34547. SELECT feature.feature_id AS ribozymic_id,
  34548. feature.feature_id,
  34549. feature.dbxref_id,
  34550. feature.organism_id,
  34551. feature.name,
  34552. feature.uniquename,
  34553. feature.residues,
  34554. feature.seqlen,
  34555. feature.md5checksum,
  34556. feature.type_id,
  34557. feature.is_analysis,
  34558. feature.is_obsolete,
  34559. feature.timeaccessioned,
  34560. feature.timelastmodified
  34561. FROM (feature
  34562. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34563. WHERE ((cvterm.name)::text = 'ribozymic'::text);
  34564. --
  34565. -- Name: right_handed_peptide_helix; Type: VIEW; Schema: so; Owner: -
  34566. --
  34567. CREATE VIEW right_handed_peptide_helix AS
  34568. SELECT feature.feature_id AS right_handed_peptide_helix_id,
  34569. feature.feature_id,
  34570. feature.dbxref_id,
  34571. feature.organism_id,
  34572. feature.name,
  34573. feature.uniquename,
  34574. feature.residues,
  34575. feature.seqlen,
  34576. feature.md5checksum,
  34577. feature.type_id,
  34578. feature.is_analysis,
  34579. feature.is_obsolete,
  34580. feature.timeaccessioned,
  34581. feature.timelastmodified
  34582. FROM (feature
  34583. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34584. WHERE (((((cvterm.name)::text = 'alpha_helix'::text) OR ((cvterm.name)::text = 'pi_helix'::text)) OR ((cvterm.name)::text = 'three_ten_helix'::text)) OR ((cvterm.name)::text = 'right_handed_peptide_helix'::text));
  34585. --
  34586. -- Name: ring_chromosome; Type: VIEW; Schema: so; Owner: -
  34587. --
  34588. CREATE VIEW ring_chromosome AS
  34589. SELECT feature.feature_id AS ring_chromosome_id,
  34590. feature.feature_id,
  34591. feature.dbxref_id,
  34592. feature.organism_id,
  34593. feature.name,
  34594. feature.uniquename,
  34595. feature.residues,
  34596. feature.seqlen,
  34597. feature.md5checksum,
  34598. feature.type_id,
  34599. feature.is_analysis,
  34600. feature.is_obsolete,
  34601. feature.timeaccessioned,
  34602. feature.timelastmodified
  34603. FROM (feature
  34604. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34605. WHERE ((((cvterm.name)::text = 'inverted_ring_chromosome'::text) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'ring_chromosome'::text));
  34606. --
  34607. -- Name: rna; Type: VIEW; Schema: so; Owner: -
  34608. --
  34609. CREATE VIEW rna AS
  34610. SELECT feature.feature_id AS rna_id,
  34611. feature.feature_id,
  34612. feature.dbxref_id,
  34613. feature.organism_id,
  34614. feature.name,
  34615. feature.uniquename,
  34616. feature.residues,
  34617. feature.seqlen,
  34618. feature.md5checksum,
  34619. feature.type_id,
  34620. feature.is_analysis,
  34621. feature.is_obsolete,
  34622. feature.timeaccessioned,
  34623. feature.timelastmodified
  34624. FROM (feature
  34625. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34626. WHERE ((cvterm.name)::text = 'RNA'::text);
  34627. --
  34628. -- Name: rna_6s; Type: VIEW; Schema: so; Owner: -
  34629. --
  34630. CREATE VIEW rna_6s AS
  34631. SELECT feature.feature_id AS rna_6s_id,
  34632. feature.feature_id,
  34633. feature.dbxref_id,
  34634. feature.organism_id,
  34635. feature.name,
  34636. feature.uniquename,
  34637. feature.residues,
  34638. feature.seqlen,
  34639. feature.md5checksum,
  34640. feature.type_id,
  34641. feature.is_analysis,
  34642. feature.is_obsolete,
  34643. feature.timeaccessioned,
  34644. feature.timelastmodified
  34645. FROM (feature
  34646. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34647. WHERE ((cvterm.name)::text = 'RNA_6S'::text);
  34648. --
  34649. -- Name: rna_aptamer; Type: VIEW; Schema: so; Owner: -
  34650. --
  34651. CREATE VIEW rna_aptamer AS
  34652. SELECT feature.feature_id AS rna_aptamer_id,
  34653. feature.feature_id,
  34654. feature.dbxref_id,
  34655. feature.organism_id,
  34656. feature.name,
  34657. feature.uniquename,
  34658. feature.residues,
  34659. feature.seqlen,
  34660. feature.md5checksum,
  34661. feature.type_id,
  34662. feature.is_analysis,
  34663. feature.is_obsolete,
  34664. feature.timeaccessioned,
  34665. feature.timelastmodified
  34666. FROM (feature
  34667. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34668. WHERE ((cvterm.name)::text = 'RNA_aptamer'::text);
  34669. --
  34670. -- Name: rna_chromosome; Type: VIEW; Schema: so; Owner: -
  34671. --
  34672. CREATE VIEW rna_chromosome AS
  34673. SELECT feature.feature_id AS rna_chromosome_id,
  34674. feature.feature_id,
  34675. feature.dbxref_id,
  34676. feature.organism_id,
  34677. feature.name,
  34678. feature.uniquename,
  34679. feature.residues,
  34680. feature.seqlen,
  34681. feature.md5checksum,
  34682. feature.type_id,
  34683. feature.is_analysis,
  34684. feature.is_obsolete,
  34685. feature.timeaccessioned,
  34686. feature.timelastmodified
  34687. FROM (feature
  34688. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34689. WHERE ((((((((cvterm.name)::text = 'single_stranded_RNA_chromosome'::text) OR ((cvterm.name)::text = 'double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'linear_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'circular_double_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'RNA_chromosome'::text));
  34690. --
  34691. -- Name: rna_hook_turn; Type: VIEW; Schema: so; Owner: -
  34692. --
  34693. CREATE VIEW rna_hook_turn AS
  34694. SELECT feature.feature_id AS rna_hook_turn_id,
  34695. feature.feature_id,
  34696. feature.dbxref_id,
  34697. feature.organism_id,
  34698. feature.name,
  34699. feature.uniquename,
  34700. feature.residues,
  34701. feature.seqlen,
  34702. feature.md5checksum,
  34703. feature.type_id,
  34704. feature.is_analysis,
  34705. feature.is_obsolete,
  34706. feature.timeaccessioned,
  34707. feature.timelastmodified
  34708. FROM (feature
  34709. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34710. WHERE ((cvterm.name)::text = 'RNA_hook_turn'::text);
  34711. --
  34712. -- Name: rna_internal_loop; Type: VIEW; Schema: so; Owner: -
  34713. --
  34714. CREATE VIEW rna_internal_loop AS
  34715. SELECT feature.feature_id AS rna_internal_loop_id,
  34716. feature.feature_id,
  34717. feature.dbxref_id,
  34718. feature.organism_id,
  34719. feature.name,
  34720. feature.uniquename,
  34721. feature.residues,
  34722. feature.seqlen,
  34723. feature.md5checksum,
  34724. feature.type_id,
  34725. feature.is_analysis,
  34726. feature.is_obsolete,
  34727. feature.timeaccessioned,
  34728. feature.timelastmodified
  34729. FROM (feature
  34730. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34731. WHERE ((((((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text) OR ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'K_turn_RNA_motif'::text)) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_internal_loop'::text));
  34732. --
  34733. -- Name: rna_junction_loop; Type: VIEW; Schema: so; Owner: -
  34734. --
  34735. CREATE VIEW rna_junction_loop AS
  34736. SELECT feature.feature_id AS rna_junction_loop_id,
  34737. feature.feature_id,
  34738. feature.dbxref_id,
  34739. feature.organism_id,
  34740. feature.name,
  34741. feature.uniquename,
  34742. feature.residues,
  34743. feature.seqlen,
  34744. feature.md5checksum,
  34745. feature.type_id,
  34746. feature.is_analysis,
  34747. feature.is_obsolete,
  34748. feature.timeaccessioned,
  34749. feature.timelastmodified
  34750. FROM (feature
  34751. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34752. WHERE (((cvterm.name)::text = 'RNA_hook_turn'::text) OR ((cvterm.name)::text = 'RNA_junction_loop'::text));
  34753. --
  34754. -- Name: rna_motif; Type: VIEW; Schema: so; Owner: -
  34755. --
  34756. CREATE VIEW rna_motif AS
  34757. SELECT feature.feature_id AS rna_motif_id,
  34758. feature.feature_id,
  34759. feature.dbxref_id,
  34760. feature.organism_id,
  34761. feature.name,
  34762. feature.uniquename,
  34763. feature.residues,
  34764. feature.seqlen,
  34765. feature.md5checksum,
  34766. feature.type_id,
  34767. feature.is_analysis,
  34768. feature.is_obsolete,
  34769. feature.timeaccessioned,
  34770. feature.timelastmodified
  34771. FROM (feature
  34772. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34773. WHERE (((((((((((cvterm.name)::text = 'RNA_internal_loop'::text) OR ((cvterm.name)::text = 'A_minor_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_junction_loop'::text)) OR ((cvterm.name)::text = 'hammerhead_ribozyme'::text)) OR ((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'K_turn_RNA_motif'::text)) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_hook_turn'::text)) OR ((cvterm.name)::text = 'RNA_motif'::text));
  34774. --
  34775. -- Name: rna_polymerase_ii_tata_box; Type: VIEW; Schema: so; Owner: -
  34776. --
  34777. CREATE VIEW rna_polymerase_ii_tata_box AS
  34778. SELECT feature.feature_id AS rna_polymerase_ii_tata_box_id,
  34779. feature.feature_id,
  34780. feature.dbxref_id,
  34781. feature.organism_id,
  34782. feature.name,
  34783. feature.uniquename,
  34784. feature.residues,
  34785. feature.seqlen,
  34786. feature.md5checksum,
  34787. feature.type_id,
  34788. feature.is_analysis,
  34789. feature.is_obsolete,
  34790. feature.timeaccessioned,
  34791. feature.timelastmodified
  34792. FROM (feature
  34793. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34794. WHERE ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text);
  34795. --
  34796. -- Name: rna_polymerase_iii_tata_box; Type: VIEW; Schema: so; Owner: -
  34797. --
  34798. CREATE VIEW rna_polymerase_iii_tata_box AS
  34799. SELECT feature.feature_id AS rna_polymerase_iii_tata_box_id,
  34800. feature.feature_id,
  34801. feature.dbxref_id,
  34802. feature.organism_id,
  34803. feature.name,
  34804. feature.uniquename,
  34805. feature.residues,
  34806. feature.seqlen,
  34807. feature.md5checksum,
  34808. feature.type_id,
  34809. feature.is_analysis,
  34810. feature.is_obsolete,
  34811. feature.timeaccessioned,
  34812. feature.timelastmodified
  34813. FROM (feature
  34814. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34815. WHERE ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text);
  34816. --
  34817. -- Name: rna_polymerase_promoter; Type: VIEW; Schema: so; Owner: -
  34818. --
  34819. CREATE VIEW rna_polymerase_promoter AS
  34820. SELECT feature.feature_id AS rna_polymerase_promoter_id,
  34821. feature.feature_id,
  34822. feature.dbxref_id,
  34823. feature.organism_id,
  34824. feature.name,
  34825. feature.uniquename,
  34826. feature.residues,
  34827. feature.seqlen,
  34828. feature.md5checksum,
  34829. feature.type_id,
  34830. feature.is_analysis,
  34831. feature.is_obsolete,
  34832. feature.timeaccessioned,
  34833. feature.timelastmodified
  34834. FROM (feature
  34835. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34836. WHERE ((((((((((((((((cvterm.name)::text = 'RNApol_I_promoter'::text) OR ((cvterm.name)::text = 'RNApol_II_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'Phage_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_core_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_promoter'::text));
  34837. --
  34838. -- Name: rna_sequence_secondary_structure; Type: VIEW; Schema: so; Owner: -
  34839. --
  34840. CREATE VIEW rna_sequence_secondary_structure AS
  34841. SELECT feature.feature_id AS rna_sequence_secondary_structure_id,
  34842. feature.feature_id,
  34843. feature.dbxref_id,
  34844. feature.organism_id,
  34845. feature.name,
  34846. feature.uniquename,
  34847. feature.residues,
  34848. feature.seqlen,
  34849. feature.md5checksum,
  34850. feature.type_id,
  34851. feature.is_analysis,
  34852. feature.is_obsolete,
  34853. feature.timeaccessioned,
  34854. feature.timelastmodified
  34855. FROM (feature
  34856. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34857. WHERE ((((cvterm.name)::text = 'stem_loop'::text) OR ((cvterm.name)::text = 'tetraloop'::text)) OR ((cvterm.name)::text = 'RNA_sequence_secondary_structure'::text));
  34858. --
  34859. -- Name: rnai_reagent; Type: VIEW; Schema: so; Owner: -
  34860. --
  34861. CREATE VIEW rnai_reagent AS
  34862. SELECT feature.feature_id AS rnai_reagent_id,
  34863. feature.feature_id,
  34864. feature.dbxref_id,
  34865. feature.organism_id,
  34866. feature.name,
  34867. feature.uniquename,
  34868. feature.residues,
  34869. feature.seqlen,
  34870. feature.md5checksum,
  34871. feature.type_id,
  34872. feature.is_analysis,
  34873. feature.is_obsolete,
  34874. feature.timeaccessioned,
  34875. feature.timelastmodified
  34876. FROM (feature
  34877. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34878. WHERE ((cvterm.name)::text = 'RNAi_reagent'::text);
  34879. --
  34880. -- Name: rnapol_i_promoter; Type: VIEW; Schema: so; Owner: -
  34881. --
  34882. CREATE VIEW rnapol_i_promoter AS
  34883. SELECT feature.feature_id AS rnapol_i_promoter_id,
  34884. feature.feature_id,
  34885. feature.dbxref_id,
  34886. feature.organism_id,
  34887. feature.name,
  34888. feature.uniquename,
  34889. feature.residues,
  34890. feature.seqlen,
  34891. feature.md5checksum,
  34892. feature.type_id,
  34893. feature.is_analysis,
  34894. feature.is_obsolete,
  34895. feature.timeaccessioned,
  34896. feature.timelastmodified
  34897. FROM (feature
  34898. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34899. WHERE ((cvterm.name)::text = 'RNApol_I_promoter'::text);
  34900. --
  34901. -- Name: rnapol_ii_core_promoter; Type: VIEW; Schema: so; Owner: -
  34902. --
  34903. CREATE VIEW rnapol_ii_core_promoter AS
  34904. SELECT feature.feature_id AS rnapol_ii_core_promoter_id,
  34905. feature.feature_id,
  34906. feature.dbxref_id,
  34907. feature.organism_id,
  34908. feature.name,
  34909. feature.uniquename,
  34910. feature.residues,
  34911. feature.seqlen,
  34912. feature.md5checksum,
  34913. feature.type_id,
  34914. feature.is_analysis,
  34915. feature.is_obsolete,
  34916. feature.timeaccessioned,
  34917. feature.timelastmodified
  34918. FROM (feature
  34919. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34920. WHERE ((cvterm.name)::text = 'RNApol_II_core_promoter'::text);
  34921. --
  34922. -- Name: rnapol_ii_promoter; Type: VIEW; Schema: so; Owner: -
  34923. --
  34924. CREATE VIEW rnapol_ii_promoter AS
  34925. SELECT feature.feature_id AS rnapol_ii_promoter_id,
  34926. feature.feature_id,
  34927. feature.dbxref_id,
  34928. feature.organism_id,
  34929. feature.name,
  34930. feature.uniquename,
  34931. feature.residues,
  34932. feature.seqlen,
  34933. feature.md5checksum,
  34934. feature.type_id,
  34935. feature.is_analysis,
  34936. feature.is_obsolete,
  34937. feature.timeaccessioned,
  34938. feature.timelastmodified
  34939. FROM (feature
  34940. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34941. WHERE (((cvterm.name)::text = 'RNApol_II_core_promoter'::text) OR ((cvterm.name)::text = 'RNApol_II_promoter'::text));
  34942. --
  34943. -- Name: rnapol_iii_promoter; Type: VIEW; Schema: so; Owner: -
  34944. --
  34945. CREATE VIEW rnapol_iii_promoter AS
  34946. SELECT feature.feature_id AS rnapol_iii_promoter_id,
  34947. feature.feature_id,
  34948. feature.dbxref_id,
  34949. feature.organism_id,
  34950. feature.name,
  34951. feature.uniquename,
  34952. feature.residues,
  34953. feature.seqlen,
  34954. feature.md5checksum,
  34955. feature.type_id,
  34956. feature.is_analysis,
  34957. feature.is_obsolete,
  34958. feature.timeaccessioned,
  34959. feature.timelastmodified
  34960. FROM (feature
  34961. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34962. WHERE (((((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter'::text));
  34963. --
  34964. -- Name: rnapol_iii_promoter_type_1; Type: VIEW; Schema: so; Owner: -
  34965. --
  34966. CREATE VIEW rnapol_iii_promoter_type_1 AS
  34967. SELECT feature.feature_id AS rnapol_iii_promoter_type_1_id,
  34968. feature.feature_id,
  34969. feature.dbxref_id,
  34970. feature.organism_id,
  34971. feature.name,
  34972. feature.uniquename,
  34973. feature.residues,
  34974. feature.seqlen,
  34975. feature.md5checksum,
  34976. feature.type_id,
  34977. feature.is_analysis,
  34978. feature.is_obsolete,
  34979. feature.timeaccessioned,
  34980. feature.timelastmodified
  34981. FROM (feature
  34982. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  34983. WHERE ((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text);
  34984. --
  34985. -- Name: rnapol_iii_promoter_type_2; Type: VIEW; Schema: so; Owner: -
  34986. --
  34987. CREATE VIEW rnapol_iii_promoter_type_2 AS
  34988. SELECT feature.feature_id AS rnapol_iii_promoter_type_2_id,
  34989. feature.feature_id,
  34990. feature.dbxref_id,
  34991. feature.organism_id,
  34992. feature.name,
  34993. feature.uniquename,
  34994. feature.residues,
  34995. feature.seqlen,
  34996. feature.md5checksum,
  34997. feature.type_id,
  34998. feature.is_analysis,
  34999. feature.is_obsolete,
  35000. feature.timeaccessioned,
  35001. feature.timelastmodified
  35002. FROM (feature
  35003. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35004. WHERE ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text);
  35005. --
  35006. -- Name: rnapol_iii_promoter_type_3; Type: VIEW; Schema: so; Owner: -
  35007. --
  35008. CREATE VIEW rnapol_iii_promoter_type_3 AS
  35009. SELECT feature.feature_id AS rnapol_iii_promoter_type_3_id,
  35010. feature.feature_id,
  35011. feature.dbxref_id,
  35012. feature.organism_id,
  35013. feature.name,
  35014. feature.uniquename,
  35015. feature.residues,
  35016. feature.seqlen,
  35017. feature.md5checksum,
  35018. feature.type_id,
  35019. feature.is_analysis,
  35020. feature.is_obsolete,
  35021. feature.timeaccessioned,
  35022. feature.timelastmodified
  35023. FROM (feature
  35024. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35025. WHERE ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text);
  35026. --
  35027. -- Name: rnase_mrp_rna; Type: VIEW; Schema: so; Owner: -
  35028. --
  35029. CREATE VIEW rnase_mrp_rna AS
  35030. SELECT feature.feature_id AS rnase_mrp_rna_id,
  35031. feature.feature_id,
  35032. feature.dbxref_id,
  35033. feature.organism_id,
  35034. feature.name,
  35035. feature.uniquename,
  35036. feature.residues,
  35037. feature.seqlen,
  35038. feature.md5checksum,
  35039. feature.type_id,
  35040. feature.is_analysis,
  35041. feature.is_obsolete,
  35042. feature.timeaccessioned,
  35043. feature.timelastmodified
  35044. FROM (feature
  35045. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35046. WHERE ((cvterm.name)::text = 'RNase_MRP_RNA'::text);
  35047. --
  35048. -- Name: rnase_mrp_rna_gene; Type: VIEW; Schema: so; Owner: -
  35049. --
  35050. CREATE VIEW rnase_mrp_rna_gene AS
  35051. SELECT feature.feature_id AS rnase_mrp_rna_gene_id,
  35052. feature.feature_id,
  35053. feature.dbxref_id,
  35054. feature.organism_id,
  35055. feature.name,
  35056. feature.uniquename,
  35057. feature.residues,
  35058. feature.seqlen,
  35059. feature.md5checksum,
  35060. feature.type_id,
  35061. feature.is_analysis,
  35062. feature.is_obsolete,
  35063. feature.timeaccessioned,
  35064. feature.timelastmodified
  35065. FROM (feature
  35066. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35067. WHERE ((cvterm.name)::text = 'RNase_MRP_RNA_gene'::text);
  35068. --
  35069. -- Name: rnase_p_rna; Type: VIEW; Schema: so; Owner: -
  35070. --
  35071. CREATE VIEW rnase_p_rna AS
  35072. SELECT feature.feature_id AS rnase_p_rna_id,
  35073. feature.feature_id,
  35074. feature.dbxref_id,
  35075. feature.organism_id,
  35076. feature.name,
  35077. feature.uniquename,
  35078. feature.residues,
  35079. feature.seqlen,
  35080. feature.md5checksum,
  35081. feature.type_id,
  35082. feature.is_analysis,
  35083. feature.is_obsolete,
  35084. feature.timeaccessioned,
  35085. feature.timelastmodified
  35086. FROM (feature
  35087. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35088. WHERE ((cvterm.name)::text = 'RNase_P_RNA'::text);
  35089. --
  35090. -- Name: rnase_p_rna_gene; Type: VIEW; Schema: so; Owner: -
  35091. --
  35092. CREATE VIEW rnase_p_rna_gene AS
  35093. SELECT feature.feature_id AS rnase_p_rna_gene_id,
  35094. feature.feature_id,
  35095. feature.dbxref_id,
  35096. feature.organism_id,
  35097. feature.name,
  35098. feature.uniquename,
  35099. feature.residues,
  35100. feature.seqlen,
  35101. feature.md5checksum,
  35102. feature.type_id,
  35103. feature.is_analysis,
  35104. feature.is_obsolete,
  35105. feature.timeaccessioned,
  35106. feature.timelastmodified
  35107. FROM (feature
  35108. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35109. WHERE ((cvterm.name)::text = 'RNase_P_RNA_gene'::text);
  35110. --
  35111. -- Name: robertsonian_fusion; Type: VIEW; Schema: so; Owner: -
  35112. --
  35113. CREATE VIEW robertsonian_fusion AS
  35114. SELECT feature.feature_id AS robertsonian_fusion_id,
  35115. feature.feature_id,
  35116. feature.dbxref_id,
  35117. feature.organism_id,
  35118. feature.name,
  35119. feature.uniquename,
  35120. feature.residues,
  35121. feature.seqlen,
  35122. feature.md5checksum,
  35123. feature.type_id,
  35124. feature.is_analysis,
  35125. feature.is_obsolete,
  35126. feature.timeaccessioned,
  35127. feature.timelastmodified
  35128. FROM (feature
  35129. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35130. WHERE ((cvterm.name)::text = 'Robertsonian_fusion'::text);
  35131. --
  35132. -- Name: rpra_rna; Type: VIEW; Schema: so; Owner: -
  35133. --
  35134. CREATE VIEW rpra_rna AS
  35135. SELECT feature.feature_id AS rpra_rna_id,
  35136. feature.feature_id,
  35137. feature.dbxref_id,
  35138. feature.organism_id,
  35139. feature.name,
  35140. feature.uniquename,
  35141. feature.residues,
  35142. feature.seqlen,
  35143. feature.md5checksum,
  35144. feature.type_id,
  35145. feature.is_analysis,
  35146. feature.is_obsolete,
  35147. feature.timeaccessioned,
  35148. feature.timelastmodified
  35149. FROM (feature
  35150. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35151. WHERE ((cvterm.name)::text = 'RprA_RNA'::text);
  35152. --
  35153. -- Name: rr_tract; Type: VIEW; Schema: so; Owner: -
  35154. --
  35155. CREATE VIEW rr_tract AS
  35156. SELECT feature.feature_id AS rr_tract_id,
  35157. feature.feature_id,
  35158. feature.dbxref_id,
  35159. feature.organism_id,
  35160. feature.name,
  35161. feature.uniquename,
  35162. feature.residues,
  35163. feature.seqlen,
  35164. feature.md5checksum,
  35165. feature.type_id,
  35166. feature.is_analysis,
  35167. feature.is_obsolete,
  35168. feature.timeaccessioned,
  35169. feature.timelastmodified
  35170. FROM (feature
  35171. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35172. WHERE ((cvterm.name)::text = 'RR_tract'::text);
  35173. --
  35174. -- Name: rre_rna; Type: VIEW; Schema: so; Owner: -
  35175. --
  35176. CREATE VIEW rre_rna AS
  35177. SELECT feature.feature_id AS rre_rna_id,
  35178. feature.feature_id,
  35179. feature.dbxref_id,
  35180. feature.organism_id,
  35181. feature.name,
  35182. feature.uniquename,
  35183. feature.residues,
  35184. feature.seqlen,
  35185. feature.md5checksum,
  35186. feature.type_id,
  35187. feature.is_analysis,
  35188. feature.is_obsolete,
  35189. feature.timeaccessioned,
  35190. feature.timelastmodified
  35191. FROM (feature
  35192. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35193. WHERE ((cvterm.name)::text = 'RRE_RNA'::text);
  35194. --
  35195. -- Name: rrna; Type: VIEW; Schema: so; Owner: -
  35196. --
  35197. CREATE VIEW rrna AS
  35198. SELECT feature.feature_id AS rrna_id,
  35199. feature.feature_id,
  35200. feature.dbxref_id,
  35201. feature.organism_id,
  35202. feature.name,
  35203. feature.uniquename,
  35204. feature.residues,
  35205. feature.seqlen,
  35206. feature.md5checksum,
  35207. feature.type_id,
  35208. feature.is_analysis,
  35209. feature.is_obsolete,
  35210. feature.timeaccessioned,
  35211. feature.timelastmodified
  35212. FROM (feature
  35213. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35214. WHERE ((((((((((((cvterm.name)::text = 'small_subunit_rRNA'::text) OR ((cvterm.name)::text = 'large_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'rRNA_18S'::text)) OR ((cvterm.name)::text = 'rRNA_16S'::text)) OR ((cvterm.name)::text = 'rRNA_5_8S'::text)) OR ((cvterm.name)::text = 'rRNA_5S'::text)) OR ((cvterm.name)::text = 'rRNA_28S'::text)) OR ((cvterm.name)::text = 'rRNA_23S'::text)) OR ((cvterm.name)::text = 'rRNA_25S'::text)) OR ((cvterm.name)::text = 'rRNA_21S'::text)) OR ((cvterm.name)::text = 'rRNA'::text));
  35215. --
  35216. -- Name: rrna_16s; Type: VIEW; Schema: so; Owner: -
  35217. --
  35218. CREATE VIEW rrna_16s AS
  35219. SELECT feature.feature_id AS rrna_16s_id,
  35220. feature.feature_id,
  35221. feature.dbxref_id,
  35222. feature.organism_id,
  35223. feature.name,
  35224. feature.uniquename,
  35225. feature.residues,
  35226. feature.seqlen,
  35227. feature.md5checksum,
  35228. feature.type_id,
  35229. feature.is_analysis,
  35230. feature.is_obsolete,
  35231. feature.timeaccessioned,
  35232. feature.timelastmodified
  35233. FROM (feature
  35234. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35235. WHERE ((cvterm.name)::text = 'rRNA_16S'::text);
  35236. --
  35237. -- Name: rrna_18s; Type: VIEW; Schema: so; Owner: -
  35238. --
  35239. CREATE VIEW rrna_18s AS
  35240. SELECT feature.feature_id AS rrna_18s_id,
  35241. feature.feature_id,
  35242. feature.dbxref_id,
  35243. feature.organism_id,
  35244. feature.name,
  35245. feature.uniquename,
  35246. feature.residues,
  35247. feature.seqlen,
  35248. feature.md5checksum,
  35249. feature.type_id,
  35250. feature.is_analysis,
  35251. feature.is_obsolete,
  35252. feature.timeaccessioned,
  35253. feature.timelastmodified
  35254. FROM (feature
  35255. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35256. WHERE ((cvterm.name)::text = 'rRNA_18S'::text);
  35257. --
  35258. -- Name: rrna_21s; Type: VIEW; Schema: so; Owner: -
  35259. --
  35260. CREATE VIEW rrna_21s AS
  35261. SELECT feature.feature_id AS rrna_21s_id,
  35262. feature.feature_id,
  35263. feature.dbxref_id,
  35264. feature.organism_id,
  35265. feature.name,
  35266. feature.uniquename,
  35267. feature.residues,
  35268. feature.seqlen,
  35269. feature.md5checksum,
  35270. feature.type_id,
  35271. feature.is_analysis,
  35272. feature.is_obsolete,
  35273. feature.timeaccessioned,
  35274. feature.timelastmodified
  35275. FROM (feature
  35276. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35277. WHERE ((cvterm.name)::text = 'rRNA_21S'::text);
  35278. --
  35279. -- Name: rrna_23s; Type: VIEW; Schema: so; Owner: -
  35280. --
  35281. CREATE VIEW rrna_23s AS
  35282. SELECT feature.feature_id AS rrna_23s_id,
  35283. feature.feature_id,
  35284. feature.dbxref_id,
  35285. feature.organism_id,
  35286. feature.name,
  35287. feature.uniquename,
  35288. feature.residues,
  35289. feature.seqlen,
  35290. feature.md5checksum,
  35291. feature.type_id,
  35292. feature.is_analysis,
  35293. feature.is_obsolete,
  35294. feature.timeaccessioned,
  35295. feature.timelastmodified
  35296. FROM (feature
  35297. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35298. WHERE ((cvterm.name)::text = 'rRNA_23S'::text);
  35299. --
  35300. -- Name: rrna_25s; Type: VIEW; Schema: so; Owner: -
  35301. --
  35302. CREATE VIEW rrna_25s AS
  35303. SELECT feature.feature_id AS rrna_25s_id,
  35304. feature.feature_id,
  35305. feature.dbxref_id,
  35306. feature.organism_id,
  35307. feature.name,
  35308. feature.uniquename,
  35309. feature.residues,
  35310. feature.seqlen,
  35311. feature.md5checksum,
  35312. feature.type_id,
  35313. feature.is_analysis,
  35314. feature.is_obsolete,
  35315. feature.timeaccessioned,
  35316. feature.timelastmodified
  35317. FROM (feature
  35318. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35319. WHERE ((cvterm.name)::text = 'rRNA_25S'::text);
  35320. --
  35321. -- Name: rrna_28s; Type: VIEW; Schema: so; Owner: -
  35322. --
  35323. CREATE VIEW rrna_28s AS
  35324. SELECT feature.feature_id AS rrna_28s_id,
  35325. feature.feature_id,
  35326. feature.dbxref_id,
  35327. feature.organism_id,
  35328. feature.name,
  35329. feature.uniquename,
  35330. feature.residues,
  35331. feature.seqlen,
  35332. feature.md5checksum,
  35333. feature.type_id,
  35334. feature.is_analysis,
  35335. feature.is_obsolete,
  35336. feature.timeaccessioned,
  35337. feature.timelastmodified
  35338. FROM (feature
  35339. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35340. WHERE ((cvterm.name)::text = 'rRNA_28S'::text);
  35341. --
  35342. -- Name: rrna_5_8s; Type: VIEW; Schema: so; Owner: -
  35343. --
  35344. CREATE VIEW rrna_5_8s AS
  35345. SELECT feature.feature_id AS rrna_5_8s_id,
  35346. feature.feature_id,
  35347. feature.dbxref_id,
  35348. feature.organism_id,
  35349. feature.name,
  35350. feature.uniquename,
  35351. feature.residues,
  35352. feature.seqlen,
  35353. feature.md5checksum,
  35354. feature.type_id,
  35355. feature.is_analysis,
  35356. feature.is_obsolete,
  35357. feature.timeaccessioned,
  35358. feature.timelastmodified
  35359. FROM (feature
  35360. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35361. WHERE ((cvterm.name)::text = 'rRNA_5_8S'::text);
  35362. --
  35363. -- Name: rrna_5s; Type: VIEW; Schema: so; Owner: -
  35364. --
  35365. CREATE VIEW rrna_5s AS
  35366. SELECT feature.feature_id AS rrna_5s_id,
  35367. feature.feature_id,
  35368. feature.dbxref_id,
  35369. feature.organism_id,
  35370. feature.name,
  35371. feature.uniquename,
  35372. feature.residues,
  35373. feature.seqlen,
  35374. feature.md5checksum,
  35375. feature.type_id,
  35376. feature.is_analysis,
  35377. feature.is_obsolete,
  35378. feature.timeaccessioned,
  35379. feature.timelastmodified
  35380. FROM (feature
  35381. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35382. WHERE ((cvterm.name)::text = 'rRNA_5S'::text);
  35383. --
  35384. -- Name: rrna_cleavage_rna; Type: VIEW; Schema: so; Owner: -
  35385. --
  35386. CREATE VIEW rrna_cleavage_rna AS
  35387. SELECT feature.feature_id AS rrna_cleavage_rna_id,
  35388. feature.feature_id,
  35389. feature.dbxref_id,
  35390. feature.organism_id,
  35391. feature.name,
  35392. feature.uniquename,
  35393. feature.residues,
  35394. feature.seqlen,
  35395. feature.md5checksum,
  35396. feature.type_id,
  35397. feature.is_analysis,
  35398. feature.is_obsolete,
  35399. feature.timeaccessioned,
  35400. feature.timelastmodified
  35401. FROM (feature
  35402. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35403. WHERE ((cvterm.name)::text = 'rRNA_cleavage_RNA'::text);
  35404. --
  35405. -- Name: rrna_cleavage_snorna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  35406. --
  35407. CREATE VIEW rrna_cleavage_snorna_primary_transcript AS
  35408. SELECT feature.feature_id AS rrna_cleavage_snorna_primary_transcript_id,
  35409. feature.feature_id,
  35410. feature.dbxref_id,
  35411. feature.organism_id,
  35412. feature.name,
  35413. feature.uniquename,
  35414. feature.residues,
  35415. feature.seqlen,
  35416. feature.md5checksum,
  35417. feature.type_id,
  35418. feature.is_analysis,
  35419. feature.is_obsolete,
  35420. feature.timeaccessioned,
  35421. feature.timelastmodified
  35422. FROM (feature
  35423. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35424. WHERE ((cvterm.name)::text = 'rRNA_cleavage_snoRNA_primary_transcript'::text);
  35425. --
  35426. -- Name: rrna_encoding; Type: VIEW; Schema: so; Owner: -
  35427. --
  35428. CREATE VIEW rrna_encoding AS
  35429. SELECT feature.feature_id AS rrna_encoding_id,
  35430. feature.feature_id,
  35431. feature.dbxref_id,
  35432. feature.organism_id,
  35433. feature.name,
  35434. feature.uniquename,
  35435. feature.residues,
  35436. feature.seqlen,
  35437. feature.md5checksum,
  35438. feature.type_id,
  35439. feature.is_analysis,
  35440. feature.is_obsolete,
  35441. feature.timeaccessioned,
  35442. feature.timelastmodified
  35443. FROM (feature
  35444. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35445. WHERE ((cvterm.name)::text = 'rRNA_encoding'::text);
  35446. --
  35447. -- Name: rrna_gene; Type: VIEW; Schema: so; Owner: -
  35448. --
  35449. CREATE VIEW rrna_gene AS
  35450. SELECT feature.feature_id AS rrna_gene_id,
  35451. feature.feature_id,
  35452. feature.dbxref_id,
  35453. feature.organism_id,
  35454. feature.name,
  35455. feature.uniquename,
  35456. feature.residues,
  35457. feature.seqlen,
  35458. feature.md5checksum,
  35459. feature.type_id,
  35460. feature.is_analysis,
  35461. feature.is_obsolete,
  35462. feature.timeaccessioned,
  35463. feature.timelastmodified
  35464. FROM (feature
  35465. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35466. WHERE ((cvterm.name)::text = 'rRNA_gene'::text);
  35467. --
  35468. -- Name: rrna_large_subunit_primary_transcript; Type: VIEW; Schema: so; Owner: -
  35469. --
  35470. CREATE VIEW rrna_large_subunit_primary_transcript AS
  35471. SELECT feature.feature_id AS rrna_large_subunit_primary_transcript_id,
  35472. feature.feature_id,
  35473. feature.dbxref_id,
  35474. feature.organism_id,
  35475. feature.name,
  35476. feature.uniquename,
  35477. feature.residues,
  35478. feature.seqlen,
  35479. feature.md5checksum,
  35480. feature.type_id,
  35481. feature.is_analysis,
  35482. feature.is_obsolete,
  35483. feature.timeaccessioned,
  35484. feature.timelastmodified
  35485. FROM (feature
  35486. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35487. WHERE ((cvterm.name)::text = 'rRNA_large_subunit_primary_transcript'::text);
  35488. --
  35489. -- Name: rrna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  35490. --
  35491. CREATE VIEW rrna_primary_transcript AS
  35492. SELECT feature.feature_id AS rrna_primary_transcript_id,
  35493. feature.feature_id,
  35494. feature.dbxref_id,
  35495. feature.organism_id,
  35496. feature.name,
  35497. feature.uniquename,
  35498. feature.residues,
  35499. feature.seqlen,
  35500. feature.md5checksum,
  35501. feature.type_id,
  35502. feature.is_analysis,
  35503. feature.is_obsolete,
  35504. feature.timeaccessioned,
  35505. feature.timelastmodified
  35506. FROM (feature
  35507. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35508. WHERE ((((cvterm.name)::text = 'rRNA_small_subunit_primary_transcript'::text) OR ((cvterm.name)::text = 'rRNA_large_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_primary_transcript'::text));
  35509. --
  35510. -- Name: rrna_primary_transcript_region; Type: VIEW; Schema: so; Owner: -
  35511. --
  35512. CREATE VIEW rrna_primary_transcript_region AS
  35513. SELECT feature.feature_id AS rrna_primary_transcript_region_id,
  35514. feature.feature_id,
  35515. feature.dbxref_id,
  35516. feature.organism_id,
  35517. feature.name,
  35518. feature.uniquename,
  35519. feature.residues,
  35520. feature.seqlen,
  35521. feature.md5checksum,
  35522. feature.type_id,
  35523. feature.is_analysis,
  35524. feature.is_obsolete,
  35525. feature.timeaccessioned,
  35526. feature.timelastmodified
  35527. FROM (feature
  35528. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35529. WHERE (((((cvterm.name)::text = 'transcribed_spacer_region'::text) OR ((cvterm.name)::text = 'internal_transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'external_transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'rRNA_primary_transcript_region'::text));
  35530. --
  35531. -- Name: rrna_small_subunit_primary_transcript; Type: VIEW; Schema: so; Owner: -
  35532. --
  35533. CREATE VIEW rrna_small_subunit_primary_transcript AS
  35534. SELECT feature.feature_id AS rrna_small_subunit_primary_transcript_id,
  35535. feature.feature_id,
  35536. feature.dbxref_id,
  35537. feature.organism_id,
  35538. feature.name,
  35539. feature.uniquename,
  35540. feature.residues,
  35541. feature.seqlen,
  35542. feature.md5checksum,
  35543. feature.type_id,
  35544. feature.is_analysis,
  35545. feature.is_obsolete,
  35546. feature.timeaccessioned,
  35547. feature.timelastmodified
  35548. FROM (feature
  35549. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35550. WHERE ((cvterm.name)::text = 'rRNA_small_subunit_primary_transcript'::text);
  35551. --
  35552. -- Name: rst; Type: VIEW; Schema: so; Owner: -
  35553. --
  35554. CREATE VIEW rst AS
  35555. SELECT feature.feature_id AS rst_id,
  35556. feature.feature_id,
  35557. feature.dbxref_id,
  35558. feature.organism_id,
  35559. feature.name,
  35560. feature.uniquename,
  35561. feature.residues,
  35562. feature.seqlen,
  35563. feature.md5checksum,
  35564. feature.type_id,
  35565. feature.is_analysis,
  35566. feature.is_obsolete,
  35567. feature.timeaccessioned,
  35568. feature.timelastmodified
  35569. FROM (feature
  35570. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35571. WHERE ((((cvterm.name)::text = 'three_prime_RST'::text) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'RST'::text));
  35572. --
  35573. -- Name: rst_match; Type: VIEW; Schema: so; Owner: -
  35574. --
  35575. CREATE VIEW rst_match AS
  35576. SELECT feature.feature_id AS rst_match_id,
  35577. feature.feature_id,
  35578. feature.dbxref_id,
  35579. feature.organism_id,
  35580. feature.name,
  35581. feature.uniquename,
  35582. feature.residues,
  35583. feature.seqlen,
  35584. feature.md5checksum,
  35585. feature.type_id,
  35586. feature.is_analysis,
  35587. feature.is_obsolete,
  35588. feature.timeaccessioned,
  35589. feature.timelastmodified
  35590. FROM (feature
  35591. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35592. WHERE ((cvterm.name)::text = 'RST_match'::text);
  35593. --
  35594. -- Name: s_gna; Type: VIEW; Schema: so; Owner: -
  35595. --
  35596. CREATE VIEW s_gna AS
  35597. SELECT feature.feature_id AS s_gna_id,
  35598. feature.feature_id,
  35599. feature.dbxref_id,
  35600. feature.organism_id,
  35601. feature.name,
  35602. feature.uniquename,
  35603. feature.residues,
  35604. feature.seqlen,
  35605. feature.md5checksum,
  35606. feature.type_id,
  35607. feature.is_analysis,
  35608. feature.is_obsolete,
  35609. feature.timeaccessioned,
  35610. feature.timelastmodified
  35611. FROM (feature
  35612. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35613. WHERE ((cvterm.name)::text = 'S_GNA'::text);
  35614. --
  35615. -- Name: s_gna_oligo; Type: VIEW; Schema: so; Owner: -
  35616. --
  35617. CREATE VIEW s_gna_oligo AS
  35618. SELECT feature.feature_id AS s_gna_oligo_id,
  35619. feature.feature_id,
  35620. feature.dbxref_id,
  35621. feature.organism_id,
  35622. feature.name,
  35623. feature.uniquename,
  35624. feature.residues,
  35625. feature.seqlen,
  35626. feature.md5checksum,
  35627. feature.type_id,
  35628. feature.is_analysis,
  35629. feature.is_obsolete,
  35630. feature.timeaccessioned,
  35631. feature.timelastmodified
  35632. FROM (feature
  35633. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35634. WHERE ((cvterm.name)::text = 'S_GNA_oligo'::text);
  35635. --
  35636. -- Name: sage_tag; Type: VIEW; Schema: so; Owner: -
  35637. --
  35638. CREATE VIEW sage_tag AS
  35639. SELECT feature.feature_id AS sage_tag_id,
  35640. feature.feature_id,
  35641. feature.dbxref_id,
  35642. feature.organism_id,
  35643. feature.name,
  35644. feature.uniquename,
  35645. feature.residues,
  35646. feature.seqlen,
  35647. feature.md5checksum,
  35648. feature.type_id,
  35649. feature.is_analysis,
  35650. feature.is_obsolete,
  35651. feature.timeaccessioned,
  35652. feature.timelastmodified
  35653. FROM (feature
  35654. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35655. WHERE ((cvterm.name)::text = 'SAGE_tag'::text);
  35656. --
  35657. -- Name: sarcin_like_rna_motif; Type: VIEW; Schema: so; Owner: -
  35658. --
  35659. CREATE VIEW sarcin_like_rna_motif AS
  35660. SELECT feature.feature_id AS sarcin_like_rna_motif_id,
  35661. feature.feature_id,
  35662. feature.dbxref_id,
  35663. feature.organism_id,
  35664. feature.name,
  35665. feature.uniquename,
  35666. feature.residues,
  35667. feature.seqlen,
  35668. feature.md5checksum,
  35669. feature.type_id,
  35670. feature.is_analysis,
  35671. feature.is_obsolete,
  35672. feature.timeaccessioned,
  35673. feature.timelastmodified
  35674. FROM (feature
  35675. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35676. WHERE ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text);
  35677. --
  35678. -- Name: satellite_dna; Type: VIEW; Schema: so; Owner: -
  35679. --
  35680. CREATE VIEW satellite_dna AS
  35681. SELECT feature.feature_id AS satellite_dna_id,
  35682. feature.feature_id,
  35683. feature.dbxref_id,
  35684. feature.organism_id,
  35685. feature.name,
  35686. feature.uniquename,
  35687. feature.residues,
  35688. feature.seqlen,
  35689. feature.md5checksum,
  35690. feature.type_id,
  35691. feature.is_analysis,
  35692. feature.is_obsolete,
  35693. feature.timeaccessioned,
  35694. feature.timelastmodified
  35695. FROM (feature
  35696. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35697. WHERE (((((((cvterm.name)::text = 'microsatellite'::text) OR ((cvterm.name)::text = 'minisatellite'::text)) OR ((cvterm.name)::text = 'dinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'trinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'tetranucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'satellite_DNA'::text));
  35698. --
  35699. -- Name: schellmann_loop; Type: VIEW; Schema: so; Owner: -
  35700. --
  35701. CREATE VIEW schellmann_loop AS
  35702. SELECT feature.feature_id AS schellmann_loop_id,
  35703. feature.feature_id,
  35704. feature.dbxref_id,
  35705. feature.organism_id,
  35706. feature.name,
  35707. feature.uniquename,
  35708. feature.residues,
  35709. feature.seqlen,
  35710. feature.md5checksum,
  35711. feature.type_id,
  35712. feature.is_analysis,
  35713. feature.is_obsolete,
  35714. feature.timeaccessioned,
  35715. feature.timelastmodified
  35716. FROM (feature
  35717. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35718. WHERE ((((cvterm.name)::text = 'schellmann_loop_seven'::text) OR ((cvterm.name)::text = 'schellmann_loop_six'::text)) OR ((cvterm.name)::text = 'schellmann_loop'::text));
  35719. --
  35720. -- Name: schellmann_loop_seven; Type: VIEW; Schema: so; Owner: -
  35721. --
  35722. CREATE VIEW schellmann_loop_seven AS
  35723. SELECT feature.feature_id AS schellmann_loop_seven_id,
  35724. feature.feature_id,
  35725. feature.dbxref_id,
  35726. feature.organism_id,
  35727. feature.name,
  35728. feature.uniquename,
  35729. feature.residues,
  35730. feature.seqlen,
  35731. feature.md5checksum,
  35732. feature.type_id,
  35733. feature.is_analysis,
  35734. feature.is_obsolete,
  35735. feature.timeaccessioned,
  35736. feature.timelastmodified
  35737. FROM (feature
  35738. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35739. WHERE ((cvterm.name)::text = 'schellmann_loop_seven'::text);
  35740. --
  35741. -- Name: schellmann_loop_six; Type: VIEW; Schema: so; Owner: -
  35742. --
  35743. CREATE VIEW schellmann_loop_six AS
  35744. SELECT feature.feature_id AS schellmann_loop_six_id,
  35745. feature.feature_id,
  35746. feature.dbxref_id,
  35747. feature.organism_id,
  35748. feature.name,
  35749. feature.uniquename,
  35750. feature.residues,
  35751. feature.seqlen,
  35752. feature.md5checksum,
  35753. feature.type_id,
  35754. feature.is_analysis,
  35755. feature.is_obsolete,
  35756. feature.timeaccessioned,
  35757. feature.timelastmodified
  35758. FROM (feature
  35759. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35760. WHERE ((cvterm.name)::text = 'schellmann_loop_six'::text);
  35761. --
  35762. -- Name: score; Type: VIEW; Schema: so; Owner: -
  35763. --
  35764. CREATE VIEW score AS
  35765. SELECT feature.feature_id AS score_id,
  35766. feature.feature_id,
  35767. feature.dbxref_id,
  35768. feature.organism_id,
  35769. feature.name,
  35770. feature.uniquename,
  35771. feature.residues,
  35772. feature.seqlen,
  35773. feature.md5checksum,
  35774. feature.type_id,
  35775. feature.is_analysis,
  35776. feature.is_obsolete,
  35777. feature.timeaccessioned,
  35778. feature.timelastmodified
  35779. FROM (feature
  35780. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35781. WHERE ((cvterm.name)::text = 'score'::text);
  35782. --
  35783. -- Name: scrna; Type: VIEW; Schema: so; Owner: -
  35784. --
  35785. CREATE VIEW scrna AS
  35786. SELECT feature.feature_id AS scrna_id,
  35787. feature.feature_id,
  35788. feature.dbxref_id,
  35789. feature.organism_id,
  35790. feature.name,
  35791. feature.uniquename,
  35792. feature.residues,
  35793. feature.seqlen,
  35794. feature.md5checksum,
  35795. feature.type_id,
  35796. feature.is_analysis,
  35797. feature.is_obsolete,
  35798. feature.timeaccessioned,
  35799. feature.timelastmodified
  35800. FROM (feature
  35801. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35802. WHERE ((cvterm.name)::text = 'scRNA'::text);
  35803. --
  35804. -- Name: scrna_encoding; Type: VIEW; Schema: so; Owner: -
  35805. --
  35806. CREATE VIEW scrna_encoding AS
  35807. SELECT feature.feature_id AS scrna_encoding_id,
  35808. feature.feature_id,
  35809. feature.dbxref_id,
  35810. feature.organism_id,
  35811. feature.name,
  35812. feature.uniquename,
  35813. feature.residues,
  35814. feature.seqlen,
  35815. feature.md5checksum,
  35816. feature.type_id,
  35817. feature.is_analysis,
  35818. feature.is_obsolete,
  35819. feature.timeaccessioned,
  35820. feature.timelastmodified
  35821. FROM (feature
  35822. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35823. WHERE ((cvterm.name)::text = 'scRNA_encoding'::text);
  35824. --
  35825. -- Name: scrna_gene; Type: VIEW; Schema: so; Owner: -
  35826. --
  35827. CREATE VIEW scrna_gene AS
  35828. SELECT feature.feature_id AS scrna_gene_id,
  35829. feature.feature_id,
  35830. feature.dbxref_id,
  35831. feature.organism_id,
  35832. feature.name,
  35833. feature.uniquename,
  35834. feature.residues,
  35835. feature.seqlen,
  35836. feature.md5checksum,
  35837. feature.type_id,
  35838. feature.is_analysis,
  35839. feature.is_obsolete,
  35840. feature.timeaccessioned,
  35841. feature.timelastmodified
  35842. FROM (feature
  35843. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35844. WHERE ((cvterm.name)::text = 'scRNA_gene'::text);
  35845. --
  35846. -- Name: scrna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  35847. --
  35848. CREATE VIEW scrna_primary_transcript AS
  35849. SELECT feature.feature_id AS scrna_primary_transcript_id,
  35850. feature.feature_id,
  35851. feature.dbxref_id,
  35852. feature.organism_id,
  35853. feature.name,
  35854. feature.uniquename,
  35855. feature.residues,
  35856. feature.seqlen,
  35857. feature.md5checksum,
  35858. feature.type_id,
  35859. feature.is_analysis,
  35860. feature.is_obsolete,
  35861. feature.timeaccessioned,
  35862. feature.timelastmodified
  35863. FROM (feature
  35864. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35865. WHERE ((cvterm.name)::text = 'scRNA_primary_transcript'::text);
  35866. --
  35867. -- Name: secis_element; Type: VIEW; Schema: so; Owner: -
  35868. --
  35869. CREATE VIEW secis_element AS
  35870. SELECT feature.feature_id AS secis_element_id,
  35871. feature.feature_id,
  35872. feature.dbxref_id,
  35873. feature.organism_id,
  35874. feature.name,
  35875. feature.uniquename,
  35876. feature.residues,
  35877. feature.seqlen,
  35878. feature.md5checksum,
  35879. feature.type_id,
  35880. feature.is_analysis,
  35881. feature.is_obsolete,
  35882. feature.timeaccessioned,
  35883. feature.timelastmodified
  35884. FROM (feature
  35885. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35886. WHERE ((cvterm.name)::text = 'SECIS_element'::text);
  35887. --
  35888. -- Name: selenocysteine; Type: VIEW; Schema: so; Owner: -
  35889. --
  35890. CREATE VIEW selenocysteine AS
  35891. SELECT feature.feature_id AS selenocysteine_id,
  35892. feature.feature_id,
  35893. feature.dbxref_id,
  35894. feature.organism_id,
  35895. feature.name,
  35896. feature.uniquename,
  35897. feature.residues,
  35898. feature.seqlen,
  35899. feature.md5checksum,
  35900. feature.type_id,
  35901. feature.is_analysis,
  35902. feature.is_obsolete,
  35903. feature.timeaccessioned,
  35904. feature.timelastmodified
  35905. FROM (feature
  35906. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35907. WHERE ((cvterm.name)::text = 'selenocysteine'::text);
  35908. --
  35909. -- Name: selenocysteine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  35910. --
  35911. CREATE VIEW selenocysteine_trna_primary_transcript AS
  35912. SELECT feature.feature_id AS selenocysteine_trna_primary_transcript_id,
  35913. feature.feature_id,
  35914. feature.dbxref_id,
  35915. feature.organism_id,
  35916. feature.name,
  35917. feature.uniquename,
  35918. feature.residues,
  35919. feature.seqlen,
  35920. feature.md5checksum,
  35921. feature.type_id,
  35922. feature.is_analysis,
  35923. feature.is_obsolete,
  35924. feature.timeaccessioned,
  35925. feature.timelastmodified
  35926. FROM (feature
  35927. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35928. WHERE ((cvterm.name)::text = 'selenocysteine_tRNA_primary_transcript'::text);
  35929. --
  35930. -- Name: selenocysteinyl_trna; Type: VIEW; Schema: so; Owner: -
  35931. --
  35932. CREATE VIEW selenocysteinyl_trna AS
  35933. SELECT feature.feature_id AS selenocysteinyl_trna_id,
  35934. feature.feature_id,
  35935. feature.dbxref_id,
  35936. feature.organism_id,
  35937. feature.name,
  35938. feature.uniquename,
  35939. feature.residues,
  35940. feature.seqlen,
  35941. feature.md5checksum,
  35942. feature.type_id,
  35943. feature.is_analysis,
  35944. feature.is_obsolete,
  35945. feature.timeaccessioned,
  35946. feature.timelastmodified
  35947. FROM (feature
  35948. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35949. WHERE ((cvterm.name)::text = 'selenocysteinyl_tRNA'::text);
  35950. --
  35951. -- Name: sequence_alteration; Type: VIEW; Schema: so; Owner: -
  35952. --
  35953. CREATE VIEW sequence_alteration AS
  35954. SELECT feature.feature_id AS sequence_alteration_id,
  35955. feature.feature_id,
  35956. feature.dbxref_id,
  35957. feature.organism_id,
  35958. feature.name,
  35959. feature.uniquename,
  35960. feature.residues,
  35961. feature.seqlen,
  35962. feature.md5checksum,
  35963. feature.type_id,
  35964. feature.is_analysis,
  35965. feature.is_obsolete,
  35966. feature.timeaccessioned,
  35967. feature.timelastmodified
  35968. FROM (feature
  35969. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35970. WHERE (((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'deletion'::text) OR ((cvterm.name)::text = 'translocation'::text)) OR ((cvterm.name)::text = 'insertion'::text)) OR ((cvterm.name)::text = 'copy_number_variation'::text)) OR ((cvterm.name)::text = 'UPD'::text)) OR ((cvterm.name)::text = 'structural_alteration'::text)) OR ((cvterm.name)::text = 'substitution'::text)) OR ((cvterm.name)::text = 'indel'::text)) OR ((cvterm.name)::text = 'inversion'::text)) OR ((cvterm.name)::text = 'transgenic_insertion'::text)) OR ((cvterm.name)::text = 'duplication'::text)) OR ((cvterm.name)::text = 'tandem_duplication'::text)) OR ((cvterm.name)::text = 'direct_tandem_duplication'::text)) OR ((cvterm.name)::text = 'inverted_tandem_duplication'::text)) OR ((cvterm.name)::text = 'copy_number_gain'::text)) OR ((cvterm.name)::text = 'copy_number_loss'::text)) OR ((cvterm.name)::text = 'maternal_uniparental_disomy'::text)) OR ((cvterm.name)::text = 'paternal_uniparental_disomy'::text)) OR ((cvterm.name)::text = 'complex_structural_alteration'::text)) OR ((cvterm.name)::text = 'sequence_length_variation'::text)) OR ((cvterm.name)::text = 'MNP'::text)) OR ((cvterm.name)::text = 'SNV'::text)) OR ((cvterm.name)::text = 'complex_substitution'::text)) OR ((cvterm.name)::text = 'simple_sequence_length_variation'::text)) OR ((cvterm.name)::text = 'SNP'::text)) OR ((cvterm.name)::text = 'point_mutation'::text)) OR ((cvterm.name)::text = 'transition'::text)) OR ((cvterm.name)::text = 'transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'sequence_alteration'::text));
  35971. --
  35972. -- Name: sequence_assembly; Type: VIEW; Schema: so; Owner: -
  35973. --
  35974. CREATE VIEW sequence_assembly AS
  35975. SELECT feature.feature_id AS sequence_assembly_id,
  35976. feature.feature_id,
  35977. feature.dbxref_id,
  35978. feature.organism_id,
  35979. feature.name,
  35980. feature.uniquename,
  35981. feature.residues,
  35982. feature.seqlen,
  35983. feature.md5checksum,
  35984. feature.type_id,
  35985. feature.is_analysis,
  35986. feature.is_obsolete,
  35987. feature.timeaccessioned,
  35988. feature.timelastmodified
  35989. FROM (feature
  35990. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  35991. WHERE (((((((((cvterm.name)::text = 'supercontig'::text) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'tiling_path'::text)) OR ((cvterm.name)::text = 'virtual_sequence'::text)) OR ((cvterm.name)::text = 'golden_path'::text)) OR ((cvterm.name)::text = 'ultracontig'::text)) OR ((cvterm.name)::text = 'expressed_sequence_assembly'::text)) OR ((cvterm.name)::text = 'sequence_assembly'::text));
  35992. --
  35993. -- Name: sequence_attribute; Type: VIEW; Schema: so; Owner: -
  35994. --
  35995. CREATE VIEW sequence_attribute AS
  35996. SELECT feature.feature_id AS sequence_attribute_id,
  35997. feature.feature_id,
  35998. feature.dbxref_id,
  35999. feature.organism_id,
  36000. feature.name,
  36001. feature.uniquename,
  36002. feature.residues,
  36003. feature.seqlen,
  36004. feature.md5checksum,
  36005. feature.type_id,
  36006. feature.is_analysis,
  36007. feature.is_obsolete,
  36008. feature.timeaccessioned,
  36009. feature.timelastmodified
  36010. FROM (feature
  36011. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36012. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'polymer_attribute'::text) OR ((cvterm.name)::text = 'feature_attribute'::text)) OR ((cvterm.name)::text = 'sequence_location'::text)) OR ((cvterm.name)::text = 'variant_quality'::text)) OR ((cvterm.name)::text = 'nucleic_acid'::text)) OR ((cvterm.name)::text = 'synthetic_sequence'::text)) OR ((cvterm.name)::text = 'topology_attribute'::text)) OR ((cvterm.name)::text = 'peptidyl'::text)) OR ((cvterm.name)::text = 'DNA'::text)) OR ((cvterm.name)::text = 'RNA'::text)) OR ((cvterm.name)::text = 'morpholino_backbone'::text)) OR ((cvterm.name)::text = 'PNA'::text)) OR ((cvterm.name)::text = 'LNA'::text)) OR ((cvterm.name)::text = 'TNA'::text)) OR ((cvterm.name)::text = 'GNA'::text)) OR ((cvterm.name)::text = 'cDNA'::text)) OR ((cvterm.name)::text = 'genomic_DNA'::text)) OR ((cvterm.name)::text = 'single_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'double_stranded_cDNA'::text)) OR ((cvterm.name)::text = 'R_GNA'::text)) OR ((cvterm.name)::text = 'S_GNA'::text)) OR ((cvterm.name)::text = 'random_sequence'::text)) OR ((cvterm.name)::text = 'designed_sequence'::text)) OR ((cvterm.name)::text = 'linear'::text)) OR ((cvterm.name)::text = 'circular'::text)) OR ((cvterm.name)::text = 'transcript_attribute'::text)) OR ((cvterm.name)::text = 'bound_by_factor'::text)) OR ((cvterm.name)::text = 'flanked'::text)) OR ((cvterm.name)::text = 'gene_attribute'::text)) OR ((cvterm.name)::text = 'retrotransposed'::text)) OR ((cvterm.name)::text = 'transgenic'::text)) OR ((cvterm.name)::text = 'natural'::text)) OR ((cvterm.name)::text = 'engineered'::text)) OR ((cvterm.name)::text = 'foreign'::text)) OR ((cvterm.name)::text = 'fusion'::text)) OR ((cvterm.name)::text = 'rescue'::text)) OR ((cvterm.name)::text = 'wild_type'::text)) OR ((cvterm.name)::text = 'conserved'::text)) OR ((cvterm.name)::text = 'status'::text)) OR ((cvterm.name)::text = 'intermediate'::text)) OR ((cvterm.name)::text = 'recombinationally_rearranged'::text)) OR ((cvterm.name)::text = 'cryptic'::text)) OR ((cvterm.name)::text = 'strand_attribute'::text)) OR ((cvterm.name)::text = 'direction_attribute'::text)) OR ((cvterm.name)::text = 'enzymatic'::text)) OR ((cvterm.name)::text = 'mobile'::text)) OR ((cvterm.name)::text = 'alteration_attribute'::text)) OR ((cvterm.name)::text = 'experimental_feature_attribute'::text)) OR ((cvterm.name)::text = 'edited'::text)) OR ((cvterm.name)::text = 'capped'::text)) OR ((cvterm.name)::text = 'mRNA_attribute'::text)) OR ((cvterm.name)::text = 'trans_spliced'::text)) OR ((cvterm.name)::text = 'alternatively_spliced'::text)) OR ((cvterm.name)::text = 'monocistronic'::text)) OR ((cvterm.name)::text = 'polycistronic'::text)) OR ((cvterm.name)::text = 'polyadenylated'::text)) OR ((cvterm.name)::text = 'exemplar'::text)) OR ((cvterm.name)::text = 'frameshift'::text)) OR ((cvterm.name)::text = 'recoded'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_framshift'::text)) OR ((cvterm.name)::text = 'codon_redefined'::text)) OR ((cvterm.name)::text = 'recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'minus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'plus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'dicistronic'::text)) OR ((cvterm.name)::text = 'bound_by_protein'::text)) OR ((cvterm.name)::text = 'bound_by_nucleic_acid'::text)) OR ((cvterm.name)::text = 'floxed'::text)) OR ((cvterm.name)::text = 'FRT_flanked'::text)) OR ((cvterm.name)::text = 'protein_coding'::text)) OR ((cvterm.name)::text = 'non_protein_coding'::text)) OR ((cvterm.name)::text = 'gene_to_gene_feature'::text)) OR ((cvterm.name)::text = 'gene_array_member'::text)) OR ((cvterm.name)::text = 'regulated'::text)) OR ((cvterm.name)::text = 'epigenetically_modified'::text)) OR ((cvterm.name)::text = 'encodes_alternately_spliced_transcripts'::text)) OR ((cvterm.name)::text = 'encodes_alternate_transcription_start_sites'::text)) OR ((cvterm.name)::text = 'intein_containing'::text)) OR ((cvterm.name)::text = 'miRNA_encoding'::text)) OR ((cvterm.name)::text = 'rRNA_encoding'::text)) OR ((cvterm.name)::text = 'scRNA_encoding'::text)) OR ((cvterm.name)::text = 'snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'snRNA_encoding'::text)) OR ((cvterm.name)::text = 'SRP_RNA_encoding'::text)) OR ((cvterm.name)::text = 'stRNA_encoding'::text)) OR ((cvterm.name)::text = 'tmRNA_encoding'::text)) OR ((cvterm.name)::text = 'tRNA_encoding'::text)) OR ((cvterm.name)::text = 'gRNA_encoding'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'overlapping'::text)) OR ((cvterm.name)::text = 'inside_intron'::text)) OR ((cvterm.name)::text = 'five_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'five_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_three_prime_overlap'::text)) OR ((cvterm.name)::text = 'three_prime_five_prime_overlap'::text)) OR ((cvterm.name)::text = 'antisense'::text)) OR ((cvterm.name)::text = 'inside_intron_antiparallel'::text)) OR ((cvterm.name)::text = 'inside_intron_parallel'::text)) OR ((cvterm.name)::text = 'operon_member'::text)) OR ((cvterm.name)::text = 'gene_cassette_member'::text)) OR ((cvterm.name)::text = 'gene_subarray_member'::text)) OR ((cvterm.name)::text = 'member_of_regulon'::text)) OR ((cvterm.name)::text = 'cassette_array_member'::text)) OR ((cvterm.name)::text = 'transcriptionally_regulated'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated'::text)) OR ((cvterm.name)::text = 'translationally_regulated'::text)) OR ((cvterm.name)::text = 'imprinted'::text)) OR ((cvterm.name)::text = 'transcriptionally_constitutive'::text)) OR ((cvterm.name)::text = 'transcriptionally_induced'::text)) OR ((cvterm.name)::text = 'transcriptionally_repressed'::text)) OR ((cvterm.name)::text = 'autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'silenced'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_stability'::text)) OR ((cvterm.name)::text = 'post_translationally_regulated_by_protein_modification'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'imprinted'::text)) OR ((cvterm.name)::text = 'allelically_excluded'::text)) OR ((cvterm.name)::text = 'rearranged_at_DNA_level'::text)) OR ((cvterm.name)::text = 'maternally_imprinted'::text)) OR ((cvterm.name)::text = 'paternally_imprinted'::text)) OR ((cvterm.name)::text = 'encodes_1_polypeptide'::text)) OR ((cvterm.name)::text = 'encodes_greater_than_1_polypeptide'::text)) OR ((cvterm.name)::text = 'encodes_disjoint_polypeptides'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides'::text)) OR ((cvterm.name)::text = 'encodes_different_polypeptides_different_stop'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_peptides_different_start'::text)) OR ((cvterm.name)::text = 'encodes_overlapping_polypeptides_different_start_and_stop'::text)) OR ((cvterm.name)::text = 'homologous'::text)) OR ((cvterm.name)::text = 'syntenic'::text)) OR ((cvterm.name)::text = 'orthologous'::text)) OR ((cvterm.name)::text = 'paralogous'::text)) OR ((cvterm.name)::text = 'fragmentary'::text)) OR ((cvterm.name)::text = 'predicted'::text)) OR ((cvterm.name)::text = 'validated'::text)) OR ((cvterm.name)::text = 'invalidated'::text)) OR ((cvterm.name)::text = 'independently_known'::text)) OR ((cvterm.name)::text = 'consensus'::text)) OR ((cvterm.name)::text = 'low_complexity'::text)) OR ((cvterm.name)::text = 'whole_genome_sequence_status'::text)) OR ((cvterm.name)::text = 'supported_by_sequence_similarity'::text)) OR ((cvterm.name)::text = 'orphan'::text)) OR ((cvterm.name)::text = 'predicted_by_ab_initio_computation'::text)) OR ((cvterm.name)::text = 'supported_by_domain_match'::text)) OR ((cvterm.name)::text = 'supported_by_EST_or_cDNA'::text)) OR ((cvterm.name)::text = 'experimentally_determined'::text)) OR ((cvterm.name)::text = 'invalidated_by_chimeric_cDNA'::text)) OR ((cvterm.name)::text = 'invalidated_by_genomic_contamination'::text)) OR ((cvterm.name)::text = 'invalidated_by_genomic_polyA_primed_cDNA'::text)) OR ((cvterm.name)::text = 'invalidated_by_partial_processing'::text)) OR ((cvterm.name)::text = 'standard_draft'::text)) OR ((cvterm.name)::text = 'high_quality_draft'::text)) OR ((cvterm.name)::text = 'improved_high_quality_draft'::text)) OR ((cvterm.name)::text = 'annotation_directed_improved_draft'::text)) OR ((cvterm.name)::text = 'noncontiguous_finished'::text)) OR ((cvterm.name)::text = 'finished_genome'::text)) OR ((cvterm.name)::text = 'single'::text)) OR ((cvterm.name)::text = 'double'::text)) OR ((cvterm.name)::text = 'forward'::text)) OR ((cvterm.name)::text = 'reverse'::text)) OR ((cvterm.name)::text = 'ribozymic'::text)) OR ((cvterm.name)::text = 'chromosomal_variation_attribute'::text)) OR ((cvterm.name)::text = 'insertion_attribute'::text)) OR ((cvterm.name)::text = 'inversion_attribute'::text)) OR ((cvterm.name)::text = 'translocaton_attribute'::text)) OR ((cvterm.name)::text = 'duplication_attribute'::text)) OR ((cvterm.name)::text = 'intrachromosomal'::text)) OR ((cvterm.name)::text = 'interchromosomal'::text)) OR ((cvterm.name)::text = 'tandem'::text)) OR ((cvterm.name)::text = 'direct'::text)) OR ((cvterm.name)::text = 'inverted'::text)) OR ((cvterm.name)::text = 'pericentric'::text)) OR ((cvterm.name)::text = 'paracentric'::text)) OR ((cvterm.name)::text = 'reciprocal'::text)) OR ((cvterm.name)::text = 'insertional'::text)) OR ((cvterm.name)::text = 'free'::text)) OR ((cvterm.name)::text = 'score'::text)) OR ((cvterm.name)::text = 'quality_value'::text)) OR ((cvterm.name)::text = 'organelle_sequence'::text)) OR ((cvterm.name)::text = 'plasmid_location'::text)) OR ((cvterm.name)::text = 'proviral_location'::text)) OR ((cvterm.name)::text = 'macronuclear_sequence'::text)) OR ((cvterm.name)::text = 'micronuclear_sequence'::text)) OR ((cvterm.name)::text = 'mitochondrial_sequence'::text)) OR ((cvterm.name)::text = 'nuclear_sequence'::text)) OR ((cvterm.name)::text = 'nucleomorphic_sequence'::text)) OR ((cvterm.name)::text = 'plastid_sequence'::text)) OR ((cvterm.name)::text = 'mitochondrial_DNA'::text)) OR ((cvterm.name)::text = 'apicoplast_sequence'::text)) OR ((cvterm.name)::text = 'chromoplast_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_sequence'::text)) OR ((cvterm.name)::text = 'cyanelle_sequence'::text)) OR ((cvterm.name)::text = 'leucoplast_sequence'::text)) OR ((cvterm.name)::text = 'proplastid_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_DNA'::text)) OR ((cvterm.name)::text = 'endogenous_retroviral_sequence'::text)) OR ((cvterm.name)::text = 'variant_origin'::text)) OR ((cvterm.name)::text = 'variant_frequency'::text)) OR ((cvterm.name)::text = 'variant_phenotype'::text)) OR ((cvterm.name)::text = 'maternal_variant'::text)) OR ((cvterm.name)::text = 'paternal_variant'::text)) OR ((cvterm.name)::text = 'somatic_variant'::text)) OR ((cvterm.name)::text = 'germline_variant'::text)) OR ((cvterm.name)::text = 'pedigree_specific_variant'::text)) OR ((cvterm.name)::text = 'population_specific_variant'::text)) OR ((cvterm.name)::text = 'de_novo_variant'::text)) OR ((cvterm.name)::text = 'unique_variant'::text)) OR ((cvterm.name)::text = 'rare_variant'::text)) OR ((cvterm.name)::text = 'polymorphic_variant'::text)) OR ((cvterm.name)::text = 'common_variant'::text)) OR ((cvterm.name)::text = 'fixed_variant'::text)) OR ((cvterm.name)::text = 'benign_variant'::text)) OR ((cvterm.name)::text = 'disease_associated_variant'::text)) OR ((cvterm.name)::text = 'disease_causing_variant'::text)) OR ((cvterm.name)::text = 'lethal_variant'::text)) OR ((cvterm.name)::text = 'quantitative_variant'::text)) OR ((cvterm.name)::text = 'sequence_attribute'::text));
  36013. --
  36014. -- Name: sequence_collection; Type: VIEW; Schema: so; Owner: -
  36015. --
  36016. CREATE VIEW sequence_collection AS
  36017. SELECT feature.feature_id AS sequence_collection_id,
  36018. feature.feature_id,
  36019. feature.dbxref_id,
  36020. feature.organism_id,
  36021. feature.name,
  36022. feature.uniquename,
  36023. feature.residues,
  36024. feature.seqlen,
  36025. feature.md5checksum,
  36026. feature.type_id,
  36027. feature.is_analysis,
  36028. feature.is_obsolete,
  36029. feature.timeaccessioned,
  36030. feature.timelastmodified
  36031. FROM (feature
  36032. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36033. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'kinetoplast'::text) OR ((cvterm.name)::text = 'genome'::text)) OR ((cvterm.name)::text = 'contig_collection'::text)) OR ((cvterm.name)::text = 'peptide_collection'::text)) OR ((cvterm.name)::text = 'variant_collection'::text)) OR ((cvterm.name)::text = 'kinetoplast'::text)) OR ((cvterm.name)::text = 'reference_genome'::text)) OR ((cvterm.name)::text = 'variant_genome'::text)) OR ((cvterm.name)::text = 'chromosomally_aberrant_genome'::text)) OR ((cvterm.name)::text = 'chromosome_variation'::text)) OR ((cvterm.name)::text = 'allele'::text)) OR ((cvterm.name)::text = 'haplotype'::text)) OR ((cvterm.name)::text = 'genotype'::text)) OR ((cvterm.name)::text = 'diplotype'::text)) OR ((cvterm.name)::text = 'assortment_derived_variation'::text)) OR ((cvterm.name)::text = 'chromosome_number_variation'::text)) OR ((cvterm.name)::text = 'chromosome_structure_variation'::text)) OR ((cvterm.name)::text = 'assortment_derived_duplication'::text)) OR ((cvterm.name)::text = 'assortment_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'assortment_derived_deficiency'::text)) OR ((cvterm.name)::text = 'assortment_derived_aneuploid'::text)) OR ((cvterm.name)::text = 'aneuploid'::text)) OR ((cvterm.name)::text = 'polyploid'::text)) OR ((cvterm.name)::text = 'hyperploid'::text)) OR ((cvterm.name)::text = 'hypoploid'::text)) OR ((cvterm.name)::text = 'autopolyploid'::text)) OR ((cvterm.name)::text = 'allopolyploid'::text)) OR ((cvterm.name)::text = 'free_chromosome_arm'::text)) OR ((cvterm.name)::text = 'chromosomal_transposition'::text)) OR ((cvterm.name)::text = 'aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'intrachromosomal_mutation'::text)) OR ((cvterm.name)::text = 'interchromosomal_mutation'::text)) OR ((cvterm.name)::text = 'chromosomal_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome'::text)) OR ((cvterm.name)::text = 'autosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'complex_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'uncharacterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'chromosomal_deletion'::text)) OR ((cvterm.name)::text = 'chromosomal_inversion'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'ring_chromosome'::text)) OR ((cvterm.name)::text = 'chromosome_fission'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_deficiency'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'pericentric_inversion'::text)) OR ((cvterm.name)::text = 'paracentric_inversion'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'translocation_element'::text)) OR ((cvterm.name)::text = 'Robertsonian_fusion'::text)) OR ((cvterm.name)::text = 'reciprocal_chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'cyclic_translocation'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_duplication'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'free_duplication'::text)) OR ((cvterm.name)::text = 'insertional_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'uninverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'inverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'unoriented_insertional_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome_arm'::text)) OR ((cvterm.name)::text = 'homo_compound_chromosome'::text)) OR ((cvterm.name)::text = 'hetero_compound_chromosome'::text)) OR ((cvterm.name)::text = 'dexstrosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'laevosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'partially_characterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'polymorphic_sequence_variant'::text)) OR ((cvterm.name)::text = 'sequence_collection'::text));
  36034. --
  36035. -- Name: sequence_conflict; Type: VIEW; Schema: so; Owner: -
  36036. --
  36037. CREATE VIEW sequence_conflict AS
  36038. SELECT feature.feature_id AS sequence_conflict_id,
  36039. feature.feature_id,
  36040. feature.dbxref_id,
  36041. feature.organism_id,
  36042. feature.name,
  36043. feature.uniquename,
  36044. feature.residues,
  36045. feature.seqlen,
  36046. feature.md5checksum,
  36047. feature.type_id,
  36048. feature.is_analysis,
  36049. feature.is_obsolete,
  36050. feature.timeaccessioned,
  36051. feature.timelastmodified
  36052. FROM (feature
  36053. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36054. WHERE (((cvterm.name)::text = 'contig_collection'::text) OR ((cvterm.name)::text = 'sequence_conflict'::text));
  36055. --
  36056. -- Name: sequence_difference; Type: VIEW; Schema: so; Owner: -
  36057. --
  36058. CREATE VIEW sequence_difference AS
  36059. SELECT feature.feature_id AS sequence_difference_id,
  36060. feature.feature_id,
  36061. feature.dbxref_id,
  36062. feature.organism_id,
  36063. feature.name,
  36064. feature.uniquename,
  36065. feature.residues,
  36066. feature.seqlen,
  36067. feature.md5checksum,
  36068. feature.type_id,
  36069. feature.is_analysis,
  36070. feature.is_obsolete,
  36071. feature.timeaccessioned,
  36072. feature.timelastmodified
  36073. FROM (feature
  36074. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36075. WHERE ((((((cvterm.name)::text = 'possible_base_call_error'::text) OR ((cvterm.name)::text = 'possible_assembly_error'::text)) OR ((cvterm.name)::text = 'assembly_error_correction'::text)) OR ((cvterm.name)::text = 'base_call_error_correction'::text)) OR ((cvterm.name)::text = 'sequence_difference'::text));
  36076. --
  36077. -- Name: sequence_feature; Type: VIEW; Schema: so; Owner: -
  36078. --
  36079. CREATE VIEW sequence_feature AS
  36080. SELECT feature.feature_id AS sequence_feature_id,
  36081. feature.feature_id,
  36082. feature.dbxref_id,
  36083. feature.organism_id,
  36084. feature.name,
  36085. feature.uniquename,
  36086. feature.residues,
  36087. feature.seqlen,
  36088. feature.md5checksum,
  36089. feature.type_id,
  36090. feature.is_analysis,
  36091. feature.is_obsolete,
  36092. feature.timeaccessioned,
  36093. feature.timelastmodified
  36094. FROM (feature
  36095. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36096. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'region'::text) OR ((cvterm.name)::text = 'junction'::text)) OR ((cvterm.name)::text = 'sequence_alteration'::text)) OR ((cvterm.name)::text = 'biomaterial_region'::text)) OR ((cvterm.name)::text = 'experimental_feature'::text)) OR ((cvterm.name)::text = 'biological_region'::text)) OR ((cvterm.name)::text = 'topologically_defined_region'::text)) OR ((cvterm.name)::text = 'reagent'::text)) OR ((cvterm.name)::text = 'engineered_region'::text)) OR ((cvterm.name)::text = 'PCR_product'::text)) OR ((cvterm.name)::text = 'clone'::text)) OR ((cvterm.name)::text = 'rescue_region'::text)) OR ((cvterm.name)::text = 'oligo'::text)) OR ((cvterm.name)::text = 'clone_insert'::text)) OR ((cvterm.name)::text = 'cloned_region'::text)) OR ((cvterm.name)::text = 'databank_entry'::text)) OR ((cvterm.name)::text = 'RAPD'::text)) OR ((cvterm.name)::text = 'genomic_clone'::text)) OR ((cvterm.name)::text = 'cDNA_clone'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'validated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'invalidated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'three_prime_RACE_clone'::text)) OR ((cvterm.name)::text = 'chimeric_cDNA_clone'::text)) OR ((cvterm.name)::text = 'genomically_contaminated_cDNA_clone'::text)) OR ((cvterm.name)::text = 'polyA_primed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'partially_processed_cDNA_clone'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'aptamer'::text)) OR ((cvterm.name)::text = 'probe'::text)) OR ((cvterm.name)::text = 'tag'::text)) OR ((cvterm.name)::text = 'ss_oligo'::text)) OR ((cvterm.name)::text = 'ds_oligo'::text)) OR ((cvterm.name)::text = 'DNAzyme'::text)) OR ((cvterm.name)::text = 'synthetic_oligo'::text)) OR ((cvterm.name)::text = 'DNA_aptamer'::text)) OR ((cvterm.name)::text = 'RNA_aptamer'::text)) OR ((cvterm.name)::text = 'microarray_oligo'::text)) OR ((cvterm.name)::text = 'SAGE_tag'::text)) OR ((cvterm.name)::text = 'STS'::text)) OR ((cvterm.name)::text = 'EST'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'five_prime_EST'::text)) OR ((cvterm.name)::text = 'three_prime_EST'::text)) OR ((cvterm.name)::text = 'UST'::text)) OR ((cvterm.name)::text = 'RST'::text)) OR ((cvterm.name)::text = 'three_prime_UST'::text)) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'three_prime_RST'::text)) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'primer'::text)) OR ((cvterm.name)::text = 'sequencing_primer'::text)) OR ((cvterm.name)::text = 'forward_primer'::text)) OR ((cvterm.name)::text = 'reverse_primer'::text)) OR ((cvterm.name)::text = 'ASPE_primer'::text)) OR ((cvterm.name)::text = 'dCAPS_primer'::text)) OR ((cvterm.name)::text = 'RNAi_reagent'::text)) OR ((cvterm.name)::text = 'DNA_constraint_sequence'::text)) OR ((cvterm.name)::text = 'morpholino_oligo'::text)) OR ((cvterm.name)::text = 'PNA_oligo'::text)) OR ((cvterm.name)::text = 'LNA_oligo'::text)) OR ((cvterm.name)::text = 'TNA_oligo'::text)) OR ((cvterm.name)::text = 'GNA_oligo'::text)) OR ((cvterm.name)::text = 'R_GNA_oligo'::text)) OR ((cvterm.name)::text = 'S_GNA_oligo'::text)) OR ((cvterm.name)::text = 'cloned_cDNA_insert'::text)) OR ((cvterm.name)::text = 'cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'BAC_cloned_genomic_insert'::text)) OR ((cvterm.name)::text = 'engineered_gene'::text)) OR ((cvterm.name)::text = 'engineered_plasmid'::text)) OR ((cvterm.name)::text = 'engineered_rescue_region'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_region'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'engineered_insert'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_fusion_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'engineered_episome'::text)) OR ((cvterm.name)::text = 'gene_trap_construct'::text)) OR ((cvterm.name)::text = 'promoter_trap_construct'::text)) OR ((cvterm.name)::text = 'enhancer_trap_construct'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_gene'::text)) OR ((cvterm.name)::text = 'engineered_foreign_repetitive_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text)) OR ((cvterm.name)::text = 'match_part'::text)) OR ((cvterm.name)::text = 'assembly_component'::text)) OR ((cvterm.name)::text = 'conserved_region'::text)) OR ((cvterm.name)::text = 'match'::text)) OR ((cvterm.name)::text = 'remark'::text)) OR ((cvterm.name)::text = 'reading_frame'::text)) OR ((cvterm.name)::text = 'consensus_region'::text)) OR ((cvterm.name)::text = 'low_complexity_region'::text)) OR ((cvterm.name)::text = 'assembly'::text)) OR ((cvterm.name)::text = 'transcribed_fragment'::text)) OR ((cvterm.name)::text = 'transcribed_cluster'::text)) OR ((cvterm.name)::text = 'high_identity_region'::text)) OR ((cvterm.name)::text = 'mathematically_defined_repeat'::text)) OR ((cvterm.name)::text = 'experimentally_defined_binding_region'::text)) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'read'::text)) OR ((cvterm.name)::text = 'restriction_fragment'::text)) OR ((cvterm.name)::text = 'golden_path_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_fragment'::text)) OR ((cvterm.name)::text = 'gap'::text)) OR ((cvterm.name)::text = 'sonicate_fragment'::text)) OR ((cvterm.name)::text = 'paired_end_fragment'::text)) OR ((cvterm.name)::text = 'read_pair'::text)) OR ((cvterm.name)::text = 'contig_read'::text)) OR ((cvterm.name)::text = 'BAC_end'::text)) OR ((cvterm.name)::text = 'dye_terminator_read'::text)) OR ((cvterm.name)::text = 'pyrosequenced_read'::text)) OR ((cvterm.name)::text = 'ligation_based_read'::text)) OR ((cvterm.name)::text = 'polymerase_synthesis_read'::text)) OR ((cvterm.name)::text = 'PAC_end'::text)) OR ((cvterm.name)::text = 'YAC_end'::text)) OR ((cvterm.name)::text = 'clone_end'::text)) OR ((cvterm.name)::text = 'RFLP_fragment'::text)) OR ((cvterm.name)::text = 'tiling_path_clone'::text)) OR ((cvterm.name)::text = 'coding_conserved_region'::text)) OR ((cvterm.name)::text = 'nc_conserved_region'::text)) OR ((cvterm.name)::text = 'RR_tract'::text)) OR ((cvterm.name)::text = 'homologous_region'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_I'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_II'::text)) OR ((cvterm.name)::text = 'centromere_DNA_Element_III'::text)) OR ((cvterm.name)::text = 'X_element'::text)) OR ((cvterm.name)::text = 'U_box'::text)) OR ((cvterm.name)::text = 'regional_centromere_central_core'::text)) OR ((cvterm.name)::text = 'syntenic_region'::text)) OR ((cvterm.name)::text = 'paralogous_region'::text)) OR ((cvterm.name)::text = 'orthologous_region'::text)) OR ((cvterm.name)::text = 'nucleotide_match'::text)) OR ((cvterm.name)::text = 'protein_match'::text)) OR ((cvterm.name)::text = 'expressed_sequence_match'::text)) OR ((cvterm.name)::text = 'cross_genome_match'::text)) OR ((cvterm.name)::text = 'translated_nucleotide_match'::text)) OR ((cvterm.name)::text = 'primer_match'::text)) OR ((cvterm.name)::text = 'EST_match'::text)) OR ((cvterm.name)::text = 'cDNA_match'::text)) OR ((cvterm.name)::text = 'UST_match'::text)) OR ((cvterm.name)::text = 'RST_match'::text)) OR ((cvterm.name)::text = 'sequence_difference'::text)) OR ((cvterm.name)::text = 'experimental_result_region'::text)) OR ((cvterm.name)::text = 'polypeptide_sequencing_information'::text)) OR ((cvterm.name)::text = 'possible_base_call_error'::text)) OR ((cvterm.name)::text = 'possible_assembly_error'::text)) OR ((cvterm.name)::text = 'assembly_error_correction'::text)) OR ((cvterm.name)::text = 'base_call_error_correction'::text)) OR ((cvterm.name)::text = 'overlapping_feature_set'::text)) OR ((cvterm.name)::text = 'no_output'::text)) OR ((cvterm.name)::text = 'overlapping_EST_set'::text)) OR ((cvterm.name)::text = 'non_adjacent_residues'::text)) OR ((cvterm.name)::text = 'non_terminal_residue'::text)) OR ((cvterm.name)::text = 'sequence_conflict'::text)) OR ((cvterm.name)::text = 'sequence_uncertainty'::text)) OR ((cvterm.name)::text = 'contig_collection'::text)) OR ((cvterm.name)::text = 'ORF'::text)) OR ((cvterm.name)::text = 'blocked_reading_frame'::text)) OR ((cvterm.name)::text = 'mini_gene'::text)) OR ((cvterm.name)::text = 'rescue_mini_gene'::text)) OR ((cvterm.name)::text = 'consensus_mRNA'::text)) OR ((cvterm.name)::text = 'sequence_assembly'::text)) OR ((cvterm.name)::text = 'fragment_assembly'::text)) OR ((cvterm.name)::text = 'supercontig'::text)) OR ((cvterm.name)::text = 'contig'::text)) OR ((cvterm.name)::text = 'tiling_path'::text)) OR ((cvterm.name)::text = 'virtual_sequence'::text)) OR ((cvterm.name)::text = 'golden_path'::text)) OR ((cvterm.name)::text = 'ultracontig'::text)) OR ((cvterm.name)::text = 'expressed_sequence_assembly'::text)) OR ((cvterm.name)::text = 'fingerprint_map'::text)) OR ((cvterm.name)::text = 'STS_map'::text)) OR ((cvterm.name)::text = 'RH_map'::text)) OR ((cvterm.name)::text = 'unigene_cluster'::text)) OR ((cvterm.name)::text = 'CHiP_seq_region'::text)) OR ((cvterm.name)::text = 'sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'linkage_group'::text)) OR ((cvterm.name)::text = 'polypeptide'::text)) OR ((cvterm.name)::text = 'deletion'::text)) OR ((cvterm.name)::text = 'origin_of_replication'::text)) OR ((cvterm.name)::text = 'recombination_feature'::text)) OR ((cvterm.name)::text = 'CpG_island'::text)) OR ((cvterm.name)::text = 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((cvterm.name)::text = 'cosmid'::text)) OR ((cvterm.name)::text = 'phagemid'::text)) OR ((cvterm.name)::text = 'fosmid'::text)) OR ((cvterm.name)::text = 'lambda_vector'::text)) OR ((cvterm.name)::text = 'plasmid_vector'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'phage_sequence'::text)) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'modified_RNA_base_feature'::text)) OR ((cvterm.name)::text = 'inosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanine'::text)) OR ((cvterm.name)::text = 'ribothymidine'::text)) OR ((cvterm.name)::text = 'modified_adenosine'::text)) OR ((cvterm.name)::text = 'modified_cytidine'::text)) OR ((cvterm.name)::text = 'modified_guanosine'::text)) OR ((cvterm.name)::text = 'modified_uridine'::text)) OR ((cvterm.name)::text = 'modified_inosine'::text)) OR ((cvterm.name)::text = 'methylinosine'::text)) OR ((cvterm.name)::text = 'one_methylinosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylinosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylinosine'::text)) OR ((cvterm.name)::text = 'one_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_methyladenosine'::text)) OR ((cvterm.name)::text = 'N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_isopentenyladenosine'::text)) OR ((cvterm.name)::text = 'N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine'::text)) OR ((cvterm.name)::text = 'N6_glycinylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_threonyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_methyl_N6_threonylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'N6_hydroxynorvalylcarbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosyladenosine_phosphate'::text)) OR ((cvterm.name)::text = 'N6_N6_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_2_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_N6_2_prime_O_trimethyladenosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethyladenosine'::text)) OR ((cvterm.name)::text = 'N6_acetyladenosine'::text)) OR ((cvterm.name)::text = 'three_methylcytidine'::text)) OR ((cvterm.name)::text = 'five_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'two_thiocytidine'::text)) OR ((cvterm.name)::text = 'N4_acetylcytidine'::text)) OR ((cvterm.name)::text = 'five_formylcytidine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'N4_acetyl_2_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'lysidine'::text)) OR ((cvterm.name)::text = 'N4_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_2_prime_O_dimethylcytidine'::text)) OR ((cvterm.name)::text = 'five_hydroxymethylcytidine'::text)) OR ((cvterm.name)::text = 'five_formyl_two_prime_O_methylcytidine'::text)) OR ((cvterm.name)::text = 'N4_N4_2_prime_O_trimethylcytidine'::text)) OR ((cvterm.name)::text = 'seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'one_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_methylguanosine'::text)) OR ((cvterm.name)::text = 'seven_methylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_2_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_2_prime_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'two_prime_O_ribosylguanosine_phosphate'::text)) OR ((cvterm.name)::text = 'wybutosine'::text)) OR ((cvterm.name)::text = 'peroxywybutosine'::text)) OR ((cvterm.name)::text = 'hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'undermodified_hydroxywybutosine'::text)) OR ((cvterm.name)::text = 'wyosine'::text)) OR ((cvterm.name)::text = 'methylwyosine'::text)) OR ((cvterm.name)::text = 'N2_7_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'N2_N2_7_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'one_two_prime_O_dimethylguanosine'::text)) OR ((cvterm.name)::text = 'four_demethylwyosine'::text)) OR ((cvterm.name)::text = 'isowyosine'::text)) OR ((cvterm.name)::text = 'N2_7_2prirme_O_trimethylguanosine'::text)) OR ((cvterm.name)::text = 'queuosine'::text)) OR ((cvterm.name)::text = 'epoxyqueuosine'::text)) OR ((cvterm.name)::text = 'galactosyl_queuosine'::text)) OR ((cvterm.name)::text = 'mannosyl_queuosine'::text)) OR ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'archaeosine'::text)) OR ((cvterm.name)::text = 'dihydrouridine'::text)) OR ((cvterm.name)::text = 'pseudouridine'::text)) OR ((cvterm.name)::text = 'five_methyluridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'one_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_prime_O_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'two_thiouridine'::text)) OR ((cvterm.name)::text = 'four_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methyl_2_thiouridine'::text)) OR ((cvterm.name)::text = 'two_thio_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'three_three_amino_three_carboxypropyl_uridine'::text)) OR ((cvterm.name)::text = 'five_hydroxyuridine'::text)) OR ((cvterm.name)::text = 'five_methoxyuridine'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid'::text)) OR ((cvterm.name)::text = 'uridine_five_oxyacetic_acid_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_carboxyhydroxymethyl_uridine_methyl_ester'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_methoxycarbonylmethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_aminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_methylaminomethyl_two_selenouridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyluridine'::text)) OR ((cvterm.name)::text = 'five_carbamoylmethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'three_methyluridine'::text)) OR ((cvterm.name)::text = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine'::text)) OR ((cvterm.name)::text = 'five_carboxymethyluridine'::text)) OR ((cvterm.name)::text = 'three_two_prime_O_dimethyluridine'::text)) OR ((cvterm.name)::text = 'five_methyldihydrouridine'::text)) OR ((cvterm.name)::text = 'three_methylpseudouridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyluridine'::text)) OR ((cvterm.name)::text = 'five_taurinomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_uridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_thiouridine'::text)) OR ((cvterm.name)::text = 'five_isopentenylaminomethyl_two_prime_O_methyluridine'::text)) OR ((cvterm.name)::text = 'catalytic_residue'::text)) OR ((cvterm.name)::text = 'modified_amino_acid_feature'::text)) OR ((cvterm.name)::text = 'alanine'::text)) OR ((cvterm.name)::text = 'valine'::text)) OR ((cvterm.name)::text = 'leucine'::text)) OR ((cvterm.name)::text = 'isoleucine'::text)) OR ((cvterm.name)::text = 'proline'::text)) OR ((cvterm.name)::text = 'tryptophan'::text)) OR ((cvterm.name)::text = 'phenylalanine'::text)) OR ((cvterm.name)::text = 'methionine'::text)) OR ((cvterm.name)::text = 'glycine'::text)) OR ((cvterm.name)::text = 'serine'::text)) OR ((cvterm.name)::text = 'threonine'::text)) OR ((cvterm.name)::text = 'tyrosine'::text)) OR ((cvterm.name)::text = 'cysteine'::text)) OR ((cvterm.name)::text = 'glutamine'::text)) OR ((cvterm.name)::text = 'asparagine'::text)) OR ((cvterm.name)::text = 'lysine'::text)) OR ((cvterm.name)::text = 'arginine'::text)) OR ((cvterm.name)::text = 'histidine'::text)) OR ((cvterm.name)::text = 'aspartic_acid'::text)) OR ((cvterm.name)::text = 'glutamic_acid'::text)) OR ((cvterm.name)::text = 'selenocysteine'::text)) OR ((cvterm.name)::text = 'pyrrolysine'::text)) OR ((cvterm.name)::text = 'modified_glycine'::text)) OR ((cvterm.name)::text = 'modified_L_alanine'::text)) OR ((cvterm.name)::text = 'modified_L_asparagine'::text)) OR ((cvterm.name)::text = 'modified_L_aspartic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_cysteine'::text)) OR ((cvterm.name)::text = 'modified_L_glutamic_acid'::text)) OR ((cvterm.name)::text = 'modified_L_threonine'::text)) OR ((cvterm.name)::text = 'modified_L_tryptophan'::text)) OR ((cvterm.name)::text = 'modified_L_glutamine'::text)) OR ((cvterm.name)::text = 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'CAAT_signal'::text)) OR ((cvterm.name)::text = 'minus_10_signal'::text)) OR ((cvterm.name)::text = 'minus_35_signal'::text)) OR ((cvterm.name)::text = 'DRE_motif'::text)) OR ((cvterm.name)::text = 'E_box_motif'::text)) OR ((cvterm.name)::text = 'INR1_motif'::text)) OR ((cvterm.name)::text = 'GAGA_motif'::text)) OR ((cvterm.name)::text = 'octamer_motif'::text)) OR ((cvterm.name)::text = 'retinoic_acid_responsive_element'::text)) OR ((cvterm.name)::text = 'promoter_element'::text)) OR ((cvterm.name)::text = 'DCE_SI'::text)) OR ((cvterm.name)::text = 'DCE_SII'::text)) OR ((cvterm.name)::text = 'DCE_SIII'::text)) OR ((cvterm.name)::text = 'minus_12_signal'::text)) OR ((cvterm.name)::text = 'minus_24_signal'::text)) OR ((cvterm.name)::text = 'GC_rich_promoter_region'::text)) OR ((cvterm.name)::text = 'DMv4_motif'::text)) OR ((cvterm.name)::text = 'DMv5_motif'::text)) OR ((cvterm.name)::text = 'DMv3_motif'::text)) OR ((cvterm.name)::text = 'DMv2_motif'::text)) OR ((cvterm.name)::text = 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'A_box_type_2'::text)) OR ((cvterm.name)::text = 'proximal_promoter_element'::text)) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'A_minor_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_junction_loop'::text)) OR ((cvterm.name)::text = 'hammerhead_ribozyme'::text)) OR ((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'K_turn_RNA_motif'::text)) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_hook_turn'::text)) OR ((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'sticky_end_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'modified_base'::text)) OR ((cvterm.name)::text = 'epigenetically_modified_gene'::text)) OR ((cvterm.name)::text = 'histone_modification'::text)) OR 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'H3K79_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_methylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K27_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K36_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K4_trimethylation'::text)) OR ((cvterm.name)::text = 'H3K4_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_monomethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_dimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K79_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_trimethylation_site'::text)) OR ((cvterm.name)::text = 'H3K9_monomethylation_site'::text)) OR ((cvterm.name)::text = 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'MNP'::text)) OR ((cvterm.name)::text = 'SNV'::text)) OR ((cvterm.name)::text = 'complex_substitution'::text)) OR ((cvterm.name)::text = 'simple_sequence_length_variation'::text)) OR ((cvterm.name)::text = 'SNP'::text)) OR ((cvterm.name)::text = 'point_mutation'::text)) OR ((cvterm.name)::text = 'transition'::text)) OR ((cvterm.name)::text = 'transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'flanking_region'::text)) OR ((cvterm.name)::text = 'repeat_component'::text)) OR ((cvterm.name)::text = 'transposable_element_flanking_region'::text)) OR ((cvterm.name)::text = 'five_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'three_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon_polymeric_tract'::text)) OR ((cvterm.name)::text = 'LTR_component'::text)) OR ((cvterm.name)::text = 'repeat_fragment'::text)) OR ((cvterm.name)::text = 'transposon_fragment'::text)) OR ((cvterm.name)::text = 'U5_LTR_region'::text)) OR ((cvterm.name)::text = 'R_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_LTR_region'::text)) OR ((cvterm.name)::text = 'three_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'five_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'clone_insert_end'::text)) OR ((cvterm.name)::text = 'clone_insert_start'::text)) OR ((cvterm.name)::text = 'exon_junction'::text)) OR ((cvterm.name)::text = 'insertion_site'::text)) OR ((cvterm.name)::text = 'polyA_site'::text)) OR ((cvterm.name)::text = 'deletion_junction'::text)) OR ((cvterm.name)::text = 'chromosome_breakpoint'::text)) OR ((cvterm.name)::text = 'splice_junction'::text)) OR ((cvterm.name)::text = 'trans_splice_junction'::text)) OR ((cvterm.name)::text = 'restriction_enzyme_cleavage_junction'::text)) OR ((cvterm.name)::text = 'transposable_element_insertion_site'::text)) OR ((cvterm.name)::text = 'inversion_breakpoint'::text)) OR ((cvterm.name)::text = 'translocation_breakpoint'::text)) OR ((cvterm.name)::text = 'insertion_breakpoint'::text)) OR ((cvterm.name)::text = 'deletion_breakpoint'::text)) OR ((cvterm.name)::text = 'blunt_end_restriction_enzyme_cleavage_junction'::text)) OR ((cvterm.name)::text = 'single_strand_restriction_enzyme_cleavage_site'::text)) OR ((cvterm.name)::text = 'five_prime_restriction_enzyme_junction'::text)) OR ((cvterm.name)::text = 'three_prime_restriction_enzyme_junction'::text)) OR ((cvterm.name)::text = 'deletion'::text)) OR ((cvterm.name)::text = 'translocation'::text)) OR ((cvterm.name)::text = 'insertion'::text)) OR ((cvterm.name)::text = 'copy_number_variation'::text)) OR ((cvterm.name)::text = 'UPD'::text)) OR ((cvterm.name)::text = 'structural_alteration'::text)) OR ((cvterm.name)::text = 'substitution'::text)) OR ((cvterm.name)::text = 'indel'::text)) OR ((cvterm.name)::text = 'inversion'::text)) OR ((cvterm.name)::text = 'transgenic_insertion'::text)) OR ((cvterm.name)::text = 'duplication'::text)) OR ((cvterm.name)::text = 'tandem_duplication'::text)) OR ((cvterm.name)::text = 'direct_tandem_duplication'::text)) OR ((cvterm.name)::text = 'inverted_tandem_duplication'::text)) OR ((cvterm.name)::text = 'copy_number_gain'::text)) OR ((cvterm.name)::text = 'copy_number_loss'::text)) OR ((cvterm.name)::text = 'maternal_uniparental_disomy'::text)) OR ((cvterm.name)::text = 'paternal_uniparental_disomy'::text)) OR ((cvterm.name)::text = 'complex_structural_alteration'::text)) OR ((cvterm.name)::text = 'sequence_length_variation'::text)) OR ((cvterm.name)::text = 'MNP'::text)) OR ((cvterm.name)::text = 'SNV'::text)) OR ((cvterm.name)::text = 'complex_substitution'::text)) OR ((cvterm.name)::text = 'simple_sequence_length_variation'::text)) OR ((cvterm.name)::text = 'SNP'::text)) OR ((cvterm.name)::text = 'point_mutation'::text)) OR ((cvterm.name)::text = 'transition'::text)) OR ((cvterm.name)::text = 'transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'sequence_feature'::text));
  36097. --
  36098. -- Name: sequence_length_variation; Type: VIEW; Schema: so; Owner: -
  36099. --
  36100. CREATE VIEW sequence_length_variation AS
  36101. SELECT feature.feature_id AS sequence_length_variation_id,
  36102. feature.feature_id,
  36103. feature.dbxref_id,
  36104. feature.organism_id,
  36105. feature.name,
  36106. feature.uniquename,
  36107. feature.residues,
  36108. feature.seqlen,
  36109. feature.md5checksum,
  36110. feature.type_id,
  36111. feature.is_analysis,
  36112. feature.is_obsolete,
  36113. feature.timeaccessioned,
  36114. feature.timelastmodified
  36115. FROM (feature
  36116. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36117. WHERE (((cvterm.name)::text = 'simple_sequence_length_variation'::text) OR ((cvterm.name)::text = 'sequence_length_variation'::text));
  36118. --
  36119. -- Name: sequence_location; Type: VIEW; Schema: so; Owner: -
  36120. --
  36121. CREATE VIEW sequence_location AS
  36122. SELECT feature.feature_id AS sequence_location_id,
  36123. feature.feature_id,
  36124. feature.dbxref_id,
  36125. feature.organism_id,
  36126. feature.name,
  36127. feature.uniquename,
  36128. feature.residues,
  36129. feature.seqlen,
  36130. feature.md5checksum,
  36131. feature.type_id,
  36132. feature.is_analysis,
  36133. feature.is_obsolete,
  36134. feature.timeaccessioned,
  36135. feature.timelastmodified
  36136. FROM (feature
  36137. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36138. WHERE ((((((((((((((((((((cvterm.name)::text = 'organelle_sequence'::text) OR ((cvterm.name)::text = 'plasmid_location'::text)) OR ((cvterm.name)::text = 'proviral_location'::text)) OR ((cvterm.name)::text = 'macronuclear_sequence'::text)) OR ((cvterm.name)::text = 'micronuclear_sequence'::text)) OR ((cvterm.name)::text = 'mitochondrial_sequence'::text)) OR ((cvterm.name)::text = 'nuclear_sequence'::text)) OR ((cvterm.name)::text = 'nucleomorphic_sequence'::text)) OR ((cvterm.name)::text = 'plastid_sequence'::text)) OR ((cvterm.name)::text = 'mitochondrial_DNA'::text)) OR ((cvterm.name)::text = 'apicoplast_sequence'::text)) OR ((cvterm.name)::text = 'chromoplast_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_sequence'::text)) OR ((cvterm.name)::text = 'cyanelle_sequence'::text)) OR ((cvterm.name)::text = 'leucoplast_sequence'::text)) OR ((cvterm.name)::text = 'proplastid_sequence'::text)) OR ((cvterm.name)::text = 'chloroplast_DNA'::text)) OR ((cvterm.name)::text = 'endogenous_retroviral_sequence'::text)) OR ((cvterm.name)::text = 'sequence_location'::text));
  36139. --
  36140. -- Name: sequence_motif; Type: VIEW; Schema: so; Owner: -
  36141. --
  36142. CREATE VIEW sequence_motif AS
  36143. SELECT feature.feature_id AS sequence_motif_id,
  36144. feature.feature_id,
  36145. feature.dbxref_id,
  36146. feature.organism_id,
  36147. feature.name,
  36148. feature.uniquename,
  36149. feature.residues,
  36150. feature.seqlen,
  36151. feature.md5checksum,
  36152. feature.type_id,
  36153. feature.is_analysis,
  36154. feature.is_obsolete,
  36155. feature.timeaccessioned,
  36156. feature.timelastmodified
  36157. FROM (feature
  36158. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36159. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'nucleotide_motif'::text) OR ((cvterm.name)::text = 'DNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_motif'::text)) OR ((cvterm.name)::text = 'PSE_motif'::text)) OR ((cvterm.name)::text = 'CAAT_signal'::text)) OR ((cvterm.name)::text = 'minus_10_signal'::text)) OR ((cvterm.name)::text = 'minus_35_signal'::text)) OR ((cvterm.name)::text = 'DRE_motif'::text)) OR ((cvterm.name)::text = 'E_box_motif'::text)) OR ((cvterm.name)::text = 'INR1_motif'::text)) OR ((cvterm.name)::text = 'GAGA_motif'::text)) OR ((cvterm.name)::text = 'octamer_motif'::text)) OR ((cvterm.name)::text = 'retinoic_acid_responsive_element'::text)) OR ((cvterm.name)::text = 'promoter_element'::text)) OR ((cvterm.name)::text = 'DCE_SI'::text)) OR ((cvterm.name)::text = 'DCE_SII'::text)) OR ((cvterm.name)::text = 'DCE_SIII'::text)) OR ((cvterm.name)::text = 'minus_12_signal'::text)) OR ((cvterm.name)::text = 'minus_24_signal'::text)) OR ((cvterm.name)::text = 'GC_rich_promoter_region'::text)) OR ((cvterm.name)::text = 'DMv4_motif'::text)) OR ((cvterm.name)::text = 'DMv5_motif'::text)) OR ((cvterm.name)::text = 'DMv3_motif'::text)) OR ((cvterm.name)::text = 'DMv2_motif'::text)) OR ((cvterm.name)::text = 'DPE1_motif'::text)) OR ((cvterm.name)::text = 'DMv1_motif'::text)) OR ((cvterm.name)::text = 'NDM2_motif'::text)) OR ((cvterm.name)::text = 'NDM3_motif'::text)) OR ((cvterm.name)::text = 'core_promoter_element'::text)) OR ((cvterm.name)::text = 'regulatory_promoter_element'::text)) OR ((cvterm.name)::text = 'INR_motif'::text)) OR ((cvterm.name)::text = 'DPE_motif'::text)) OR ((cvterm.name)::text = 'BREu_motif'::text)) OR ((cvterm.name)::text = 'TATA_box'::text)) OR ((cvterm.name)::text = 'A_box'::text)) OR ((cvterm.name)::text = 'B_box'::text)) OR ((cvterm.name)::text = 'C_box'::text)) OR ((cvterm.name)::text = 'MTE'::text)) OR ((cvterm.name)::text = 'BREd_motif'::text)) OR ((cvterm.name)::text = 'DCE'::text)) OR ((cvterm.name)::text = 'intermediate_element'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'A_box_type_1'::text)) OR ((cvterm.name)::text = 'A_box_type_2'::text)) OR ((cvterm.name)::text = 'proximal_promoter_element'::text)) OR ((cvterm.name)::text = 'distal_promoter_element'::text)) OR ((cvterm.name)::text = 'RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'A_minor_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_junction_loop'::text)) OR ((cvterm.name)::text = 'hammerhead_ribozyme'::text)) OR ((cvterm.name)::text = 'asymmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text)) OR ((cvterm.name)::text = 'K_turn_RNA_motif'::text)) OR ((cvterm.name)::text = 'sarcin_like_RNA_motif'::text)) OR ((cvterm.name)::text = 'RNA_hook_turn'::text)) OR ((cvterm.name)::text = 'sequence_motif'::text));
  36160. --
  36161. -- Name: sequence_rearrangement_feature; Type: VIEW; Schema: so; Owner: -
  36162. --
  36163. CREATE VIEW sequence_rearrangement_feature AS
  36164. SELECT feature.feature_id AS sequence_rearrangement_feature_id,
  36165. feature.feature_id,
  36166. feature.dbxref_id,
  36167. feature.organism_id,
  36168. feature.name,
  36169. feature.uniquename,
  36170. feature.residues,
  36171. feature.seqlen,
  36172. feature.md5checksum,
  36173. feature.type_id,
  36174. feature.is_analysis,
  36175. feature.is_obsolete,
  36176. feature.timeaccessioned,
  36177. feature.timelastmodified
  36178. FROM (feature
  36179. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36180. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'specific_recombination_site'::text) OR ((cvterm.name)::text = 'chromosome_breakage_sequence'::text)) OR ((cvterm.name)::text = 'internal_eliminated_sequence'::text)) OR ((cvterm.name)::text = 'macronucleus_destined_segment'::text)) OR ((cvterm.name)::text = 'recombination_feature_of_rearranged_gene'::text)) OR ((cvterm.name)::text = 'site_specific_recombination_target_region'::text)) OR ((cvterm.name)::text = 'recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text)) OR ((cvterm.name)::text = 'D_gene'::text)) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'three_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'VD_gene'::text)) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'integration_excision_site'::text)) OR ((cvterm.name)::text = 'resolution_site'::text)) OR ((cvterm.name)::text = 'inversion_site'::text)) OR ((cvterm.name)::text = 'inversion_site_part'::text)) OR ((cvterm.name)::text = 'attI_site'::text)) OR ((cvterm.name)::text = 'attP_site'::text)) OR ((cvterm.name)::text = 'attB_site'::text)) OR ((cvterm.name)::text = 'attL_site'::text)) OR ((cvterm.name)::text = 'attR_site'::text)) OR ((cvterm.name)::text = 'attC_site'::text)) OR ((cvterm.name)::text = 'attCtn_site'::text)) OR ((cvterm.name)::text = 'loxP_site'::text)) OR ((cvterm.name)::text = 'dif_site'::text)) OR ((cvterm.name)::text = 'FRT_site'::text)) OR ((cvterm.name)::text = 'IRLinv_site'::text)) OR ((cvterm.name)::text = 'IRRinv_site'::text)) OR ((cvterm.name)::text = 'sequence_rearrangement_feature'::text));
  36181. --
  36182. -- Name: sequence_secondary_structure; Type: VIEW; Schema: so; Owner: -
  36183. --
  36184. CREATE VIEW sequence_secondary_structure AS
  36185. SELECT feature.feature_id AS sequence_secondary_structure_id,
  36186. feature.feature_id,
  36187. feature.dbxref_id,
  36188. feature.organism_id,
  36189. feature.name,
  36190. feature.uniquename,
  36191. feature.residues,
  36192. feature.seqlen,
  36193. feature.md5checksum,
  36194. feature.type_id,
  36195. feature.is_analysis,
  36196. feature.is_obsolete,
  36197. feature.timeaccessioned,
  36198. feature.timelastmodified
  36199. FROM (feature
  36200. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36201. WHERE (((((((((((((((((cvterm.name)::text = 'G_quartet'::text) OR ((cvterm.name)::text = 'base_pair'::text)) OR ((cvterm.name)::text = 'RNA_sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'DNA_sequence_secondary_structure'::text)) OR ((cvterm.name)::text = 'pseudoknot'::text)) OR ((cvterm.name)::text = 'WC_base_pair'::text)) OR ((cvterm.name)::text = 'sugar_edge_base_pair'::text)) OR ((cvterm.name)::text = 'Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'reverse_Hoogsteen_base_pair'::text)) OR ((cvterm.name)::text = 'wobble_base_pair'::text)) OR ((cvterm.name)::text = 'stem_loop'::text)) OR ((cvterm.name)::text = 'tetraloop'::text)) OR ((cvterm.name)::text = 'i_motif'::text)) OR ((cvterm.name)::text = 'recoding_pseudoknot'::text)) OR ((cvterm.name)::text = 'H_pseudoknot'::text)) OR ((cvterm.name)::text = 'sequence_secondary_structure'::text));
  36202. --
  36203. -- Name: sequence_uncertainty; Type: VIEW; Schema: so; Owner: -
  36204. --
  36205. CREATE VIEW sequence_uncertainty AS
  36206. SELECT feature.feature_id AS sequence_uncertainty_id,
  36207. feature.feature_id,
  36208. feature.dbxref_id,
  36209. feature.organism_id,
  36210. feature.name,
  36211. feature.uniquename,
  36212. feature.residues,
  36213. feature.seqlen,
  36214. feature.md5checksum,
  36215. feature.type_id,
  36216. feature.is_analysis,
  36217. feature.is_obsolete,
  36218. feature.timeaccessioned,
  36219. feature.timelastmodified
  36220. FROM (feature
  36221. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36222. WHERE ((cvterm.name)::text = 'sequence_uncertainty'::text);
  36223. --
  36224. -- Name: sequence_variant; Type: VIEW; Schema: so; Owner: -
  36225. --
  36226. CREATE VIEW sequence_variant AS
  36227. SELECT feature.feature_id AS sequence_variant_id,
  36228. feature.feature_id,
  36229. feature.dbxref_id,
  36230. feature.organism_id,
  36231. feature.name,
  36232. feature.uniquename,
  36233. feature.residues,
  36234. feature.seqlen,
  36235. feature.md5checksum,
  36236. feature.type_id,
  36237. feature.is_analysis,
  36238. feature.is_obsolete,
  36239. feature.timeaccessioned,
  36240. feature.timelastmodified
  36241. FROM (feature
  36242. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36243. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'functional_variant'::text) OR ((cvterm.name)::text = 'structural_variant'::text)) OR ((cvterm.name)::text = 'loss_of_heterozygosity'::text)) OR ((cvterm.name)::text = 'transcript_function_variant'::text)) OR ((cvterm.name)::text = 'translational_product_function_variant'::text)) OR ((cvterm.name)::text = 'level_of_transcript_variant'::text)) OR ((cvterm.name)::text = 'transcript_processing_variant'::text)) OR ((cvterm.name)::text = 'transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'transcription_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcript_level_variant'::text)) OR ((cvterm.name)::text = 'increased_transcript_level_variant'::text)) OR ((cvterm.name)::text = 'editing_variant'::text)) OR ((cvterm.name)::text = 'polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'increased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'decreased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'increased_transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'rate_of_transcription_variant'::text)) OR ((cvterm.name)::text = 'increased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'translational_product_level_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_function_variant'::text)) OR ((cvterm.name)::text = 'decreased_translational_product_level'::text)) OR ((cvterm.name)::text = 'increased_translational_product_level'::text)) OR ((cvterm.name)::text = 'polypeptide_gain_of_function_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_localization_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_loss_of_function_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_post_translational_processing_variant'::text)) OR ((cvterm.name)::text = 'inactive_ligand_binding_site'::text)) OR ((cvterm.name)::text = 'polypeptide_partial_loss_of_function'::text)) OR ((cvterm.name)::text = 'inactive_catalytic_site'::text)) OR ((cvterm.name)::text = 'silent_mutation'::text)) OR ((cvterm.name)::text = 'copy_number_change'::text)) OR ((cvterm.name)::text = 'gene_variant'::text)) OR ((cvterm.name)::text = 'regulatory_region_variant'::text)) OR ((cvterm.name)::text = 'intergenic_variant'::text)) OR ((cvterm.name)::text = 'upstream_gene_variant'::text)) OR ((cvterm.name)::text = 'downstream_gene_variant'::text)) OR ((cvterm.name)::text = 'gene_fusion'::text)) OR ((cvterm.name)::text = 'splicing_variant'::text)) OR ((cvterm.name)::text = 'transcript_variant'::text)) OR ((cvterm.name)::text = 'translational_product_structure_variant'::text)) OR ((cvterm.name)::text = 'cryptic_splice_site_variant'::text)) OR ((cvterm.name)::text = 'exon_loss'::text)) OR ((cvterm.name)::text = 'intron_gain'::text)) OR ((cvterm.name)::text = 'splice_region_variant'::text)) OR ((cvterm.name)::text = 'cryptic_splice_acceptor'::text)) OR ((cvterm.name)::text = 'cryptic_splice_donor'::text)) OR ((cvterm.name)::text = 'complex_change_in_transcript'::text)) OR ((cvterm.name)::text = 'transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'nc_transcript_variant'::text)) OR ((cvterm.name)::text = 'NMD_transcript_variant'::text)) OR ((cvterm.name)::text = 'UTR_variant'::text)) OR ((cvterm.name)::text = 'intron_variant'::text)) OR ((cvterm.name)::text = 'exon_variant'::text)) OR ((cvterm.name)::text = 'compensatory_transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'mature_miRNA_variant'::text)) OR ((cvterm.name)::text = '5_prime_UTR_variant'::text)) OR ((cvterm.name)::text = '3_prime_UTR_variant'::text)) OR ((cvterm.name)::text = 'splice_site_variant'::text)) OR ((cvterm.name)::text = 'splice_acceptor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_5th_base_variant'::text)) OR ((cvterm.name)::text = 'coding_sequence_variant'::text)) OR ((cvterm.name)::text = 'non_coding_exon_variant'::text)) OR ((cvterm.name)::text = 'codon_variant'::text)) OR ((cvterm.name)::text = 'frameshift_variant'::text)) OR ((cvterm.name)::text = 'inframe_variant'::text)) OR ((cvterm.name)::text = 'initiator_codon_change'::text)) OR ((cvterm.name)::text = 'non_synonymous_codon'::text)) OR ((cvterm.name)::text = 'synonymous_codon'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_gained'::text)) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text)) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'frame_restoring_variant'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_2_frameshift variant'::text)) OR ((cvterm.name)::text = 'inframe_codon_gain'::text)) OR ((cvterm.name)::text = 'inframe_codon_loss'::text)) OR ((cvterm.name)::text = '3D_polypeptide_structure_variant'::text)) OR ((cvterm.name)::text = 'complex_change_of_translational_product_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_sequence_variant'::text)) OR ((cvterm.name)::text = 'complex_3D_structural_variant'::text)) OR ((cvterm.name)::text = 'conformational_change_variant'::text)) OR ((cvterm.name)::text = 'amino_acid_deletion'::text)) OR ((cvterm.name)::text = 'amino_acid_insertion'::text)) OR ((cvterm.name)::text = 'amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide'::text)) OR ((cvterm.name)::text = 'polypeptide_fusion'::text)) OR ((cvterm.name)::text = 'polypeptide_truncation'::text)) OR ((cvterm.name)::text = 'conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'non_conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'TF_binding_site_variant'::text)) OR ((cvterm.name)::text = '5KB_upstream_variant'::text)) OR ((cvterm.name)::text = '2KB_upstream_variant'::text)) OR ((cvterm.name)::text = '5KB_downstream_variant'::text)) OR ((cvterm.name)::text = '500B_downstream_variant'::text)) OR ((cvterm.name)::text = 'sequence_variant'::text));
  36244. --
  36245. -- Name: sequencing_primer; Type: VIEW; Schema: so; Owner: -
  36246. --
  36247. CREATE VIEW sequencing_primer AS
  36248. SELECT feature.feature_id AS sequencing_primer_id,
  36249. feature.feature_id,
  36250. feature.dbxref_id,
  36251. feature.organism_id,
  36252. feature.name,
  36253. feature.uniquename,
  36254. feature.residues,
  36255. feature.seqlen,
  36256. feature.md5checksum,
  36257. feature.type_id,
  36258. feature.is_analysis,
  36259. feature.is_obsolete,
  36260. feature.timeaccessioned,
  36261. feature.timelastmodified
  36262. FROM (feature
  36263. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36264. WHERE ((cvterm.name)::text = 'sequencing_primer'::text);
  36265. --
  36266. -- Name: serine; Type: VIEW; Schema: so; Owner: -
  36267. --
  36268. CREATE VIEW serine AS
  36269. SELECT feature.feature_id AS serine_id,
  36270. feature.feature_id,
  36271. feature.dbxref_id,
  36272. feature.organism_id,
  36273. feature.name,
  36274. feature.uniquename,
  36275. feature.residues,
  36276. feature.seqlen,
  36277. feature.md5checksum,
  36278. feature.type_id,
  36279. feature.is_analysis,
  36280. feature.is_obsolete,
  36281. feature.timeaccessioned,
  36282. feature.timelastmodified
  36283. FROM (feature
  36284. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36285. WHERE ((cvterm.name)::text = 'serine'::text);
  36286. --
  36287. -- Name: serine_threonine_motif; Type: VIEW; Schema: so; Owner: -
  36288. --
  36289. CREATE VIEW serine_threonine_motif AS
  36290. SELECT feature.feature_id AS serine_threonine_motif_id,
  36291. feature.feature_id,
  36292. feature.dbxref_id,
  36293. feature.organism_id,
  36294. feature.name,
  36295. feature.uniquename,
  36296. feature.residues,
  36297. feature.seqlen,
  36298. feature.md5checksum,
  36299. feature.type_id,
  36300. feature.is_analysis,
  36301. feature.is_obsolete,
  36302. feature.timeaccessioned,
  36303. feature.timelastmodified
  36304. FROM (feature
  36305. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36306. WHERE ((cvterm.name)::text = 'serine_threonine_motif'::text);
  36307. --
  36308. -- Name: serine_threonine_staple_motif; Type: VIEW; Schema: so; Owner: -
  36309. --
  36310. CREATE VIEW serine_threonine_staple_motif AS
  36311. SELECT feature.feature_id AS serine_threonine_staple_motif_id,
  36312. feature.feature_id,
  36313. feature.dbxref_id,
  36314. feature.organism_id,
  36315. feature.name,
  36316. feature.uniquename,
  36317. feature.residues,
  36318. feature.seqlen,
  36319. feature.md5checksum,
  36320. feature.type_id,
  36321. feature.is_analysis,
  36322. feature.is_obsolete,
  36323. feature.timeaccessioned,
  36324. feature.timelastmodified
  36325. FROM (feature
  36326. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36327. WHERE ((cvterm.name)::text = 'serine_threonine_staple_motif'::text);
  36328. --
  36329. -- Name: serine_threonine_turn; Type: VIEW; Schema: so; Owner: -
  36330. --
  36331. CREATE VIEW serine_threonine_turn AS
  36332. SELECT feature.feature_id AS serine_threonine_turn_id,
  36333. feature.feature_id,
  36334. feature.dbxref_id,
  36335. feature.organism_id,
  36336. feature.name,
  36337. feature.uniquename,
  36338. feature.residues,
  36339. feature.seqlen,
  36340. feature.md5checksum,
  36341. feature.type_id,
  36342. feature.is_analysis,
  36343. feature.is_obsolete,
  36344. feature.timeaccessioned,
  36345. feature.timelastmodified
  36346. FROM (feature
  36347. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36348. WHERE ((((((cvterm.name)::text = 'st_turn_left_handed_type_one'::text) OR ((cvterm.name)::text = 'st_turn_left_handed_type_two'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_one'::text)) OR ((cvterm.name)::text = 'st_turn_right_handed_type_two'::text)) OR ((cvterm.name)::text = 'serine_threonine_turn'::text));
  36349. --
  36350. -- Name: serine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  36351. --
  36352. CREATE VIEW serine_trna_primary_transcript AS
  36353. SELECT feature.feature_id AS serine_trna_primary_transcript_id,
  36354. feature.feature_id,
  36355. feature.dbxref_id,
  36356. feature.organism_id,
  36357. feature.name,
  36358. feature.uniquename,
  36359. feature.residues,
  36360. feature.seqlen,
  36361. feature.md5checksum,
  36362. feature.type_id,
  36363. feature.is_analysis,
  36364. feature.is_obsolete,
  36365. feature.timeaccessioned,
  36366. feature.timelastmodified
  36367. FROM (feature
  36368. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36369. WHERE ((cvterm.name)::text = 'serine_tRNA_primary_transcript'::text);
  36370. --
  36371. -- Name: seryl_trna; Type: VIEW; Schema: so; Owner: -
  36372. --
  36373. CREATE VIEW seryl_trna AS
  36374. SELECT feature.feature_id AS seryl_trna_id,
  36375. feature.feature_id,
  36376. feature.dbxref_id,
  36377. feature.organism_id,
  36378. feature.name,
  36379. feature.uniquename,
  36380. feature.residues,
  36381. feature.seqlen,
  36382. feature.md5checksum,
  36383. feature.type_id,
  36384. feature.is_analysis,
  36385. feature.is_obsolete,
  36386. feature.timeaccessioned,
  36387. feature.timelastmodified
  36388. FROM (feature
  36389. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36390. WHERE ((cvterm.name)::text = 'seryl_tRNA'::text);
  36391. --
  36392. -- Name: seven_aminomethyl_seven_deazaguanosine; Type: VIEW; Schema: so; Owner: -
  36393. --
  36394. CREATE VIEW seven_aminomethyl_seven_deazaguanosine AS
  36395. SELECT feature.feature_id AS seven_aminomethyl_seven_deazaguanosine_id,
  36396. feature.feature_id,
  36397. feature.dbxref_id,
  36398. feature.organism_id,
  36399. feature.name,
  36400. feature.uniquename,
  36401. feature.residues,
  36402. feature.seqlen,
  36403. feature.md5checksum,
  36404. feature.type_id,
  36405. feature.is_analysis,
  36406. feature.is_obsolete,
  36407. feature.timeaccessioned,
  36408. feature.timelastmodified
  36409. FROM (feature
  36410. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36411. WHERE ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text);
  36412. --
  36413. -- Name: seven_cyano_seven_deazaguanosine; Type: VIEW; Schema: so; Owner: -
  36414. --
  36415. CREATE VIEW seven_cyano_seven_deazaguanosine AS
  36416. SELECT feature.feature_id AS seven_cyano_seven_deazaguanosine_id,
  36417. feature.feature_id,
  36418. feature.dbxref_id,
  36419. feature.organism_id,
  36420. feature.name,
  36421. feature.uniquename,
  36422. feature.residues,
  36423. feature.seqlen,
  36424. feature.md5checksum,
  36425. feature.type_id,
  36426. feature.is_analysis,
  36427. feature.is_obsolete,
  36428. feature.timeaccessioned,
  36429. feature.timelastmodified
  36430. FROM (feature
  36431. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36432. WHERE ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text);
  36433. --
  36434. -- Name: seven_deazaguanosine; Type: VIEW; Schema: so; Owner: -
  36435. --
  36436. CREATE VIEW seven_deazaguanosine AS
  36437. SELECT feature.feature_id AS seven_deazaguanosine_id,
  36438. feature.feature_id,
  36439. feature.dbxref_id,
  36440. feature.organism_id,
  36441. feature.name,
  36442. feature.uniquename,
  36443. feature.residues,
  36444. feature.seqlen,
  36445. feature.md5checksum,
  36446. feature.type_id,
  36447. feature.is_analysis,
  36448. feature.is_obsolete,
  36449. feature.timeaccessioned,
  36450. feature.timelastmodified
  36451. FROM (feature
  36452. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36453. WHERE (((((((((cvterm.name)::text = 'queuosine'::text) OR ((cvterm.name)::text = 'epoxyqueuosine'::text)) OR ((cvterm.name)::text = 'galactosyl_queuosine'::text)) OR ((cvterm.name)::text = 'mannosyl_queuosine'::text)) OR ((cvterm.name)::text = 'seven_cyano_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'seven_aminomethyl_seven_deazaguanosine'::text)) OR ((cvterm.name)::text = 'archaeosine'::text)) OR ((cvterm.name)::text = 'seven_deazaguanosine'::text));
  36454. --
  36455. -- Name: seven_methylguanine; Type: VIEW; Schema: so; Owner: -
  36456. --
  36457. CREATE VIEW seven_methylguanine AS
  36458. SELECT feature.feature_id AS seven_methylguanine_id,
  36459. feature.feature_id,
  36460. feature.dbxref_id,
  36461. feature.organism_id,
  36462. feature.name,
  36463. feature.uniquename,
  36464. feature.residues,
  36465. feature.seqlen,
  36466. feature.md5checksum,
  36467. feature.type_id,
  36468. feature.is_analysis,
  36469. feature.is_obsolete,
  36470. feature.timeaccessioned,
  36471. feature.timelastmodified
  36472. FROM (feature
  36473. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36474. WHERE ((cvterm.name)::text = 'seven_methylguanine'::text);
  36475. --
  36476. -- Name: seven_methylguanosine; Type: VIEW; Schema: so; Owner: -
  36477. --
  36478. CREATE VIEW seven_methylguanosine AS
  36479. SELECT feature.feature_id AS seven_methylguanosine_id,
  36480. feature.feature_id,
  36481. feature.dbxref_id,
  36482. feature.organism_id,
  36483. feature.name,
  36484. feature.uniquename,
  36485. feature.residues,
  36486. feature.seqlen,
  36487. feature.md5checksum,
  36488. feature.type_id,
  36489. feature.is_analysis,
  36490. feature.is_obsolete,
  36491. feature.timeaccessioned,
  36492. feature.timelastmodified
  36493. FROM (feature
  36494. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36495. WHERE ((cvterm.name)::text = 'seven_methylguanosine'::text);
  36496. --
  36497. -- Name: shadow_enhancer; Type: VIEW; Schema: so; Owner: -
  36498. --
  36499. CREATE VIEW shadow_enhancer AS
  36500. SELECT feature.feature_id AS shadow_enhancer_id,
  36501. feature.feature_id,
  36502. feature.dbxref_id,
  36503. feature.organism_id,
  36504. feature.name,
  36505. feature.uniquename,
  36506. feature.residues,
  36507. feature.seqlen,
  36508. feature.md5checksum,
  36509. feature.type_id,
  36510. feature.is_analysis,
  36511. feature.is_obsolete,
  36512. feature.timeaccessioned,
  36513. feature.timelastmodified
  36514. FROM (feature
  36515. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36516. WHERE ((cvterm.name)::text = 'shadow_enhancer'::text);
  36517. --
  36518. -- Name: shine_dalgarno_sequence; Type: VIEW; Schema: so; Owner: -
  36519. --
  36520. CREATE VIEW shine_dalgarno_sequence AS
  36521. SELECT feature.feature_id AS shine_dalgarno_sequence_id,
  36522. feature.feature_id,
  36523. feature.dbxref_id,
  36524. feature.organism_id,
  36525. feature.name,
  36526. feature.uniquename,
  36527. feature.residues,
  36528. feature.seqlen,
  36529. feature.md5checksum,
  36530. feature.type_id,
  36531. feature.is_analysis,
  36532. feature.is_obsolete,
  36533. feature.timeaccessioned,
  36534. feature.timelastmodified
  36535. FROM (feature
  36536. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36537. WHERE ((cvterm.name)::text = 'Shine_Dalgarno_sequence'::text);
  36538. --
  36539. -- Name: signal_peptide; Type: VIEW; Schema: so; Owner: -
  36540. --
  36541. CREATE VIEW signal_peptide AS
  36542. SELECT feature.feature_id AS signal_peptide_id,
  36543. feature.feature_id,
  36544. feature.dbxref_id,
  36545. feature.organism_id,
  36546. feature.name,
  36547. feature.uniquename,
  36548. feature.residues,
  36549. feature.seqlen,
  36550. feature.md5checksum,
  36551. feature.type_id,
  36552. feature.is_analysis,
  36553. feature.is_obsolete,
  36554. feature.timeaccessioned,
  36555. feature.timelastmodified
  36556. FROM (feature
  36557. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36558. WHERE ((cvterm.name)::text = 'signal_peptide'::text);
  36559. --
  36560. -- Name: silenced; Type: VIEW; Schema: so; Owner: -
  36561. --
  36562. CREATE VIEW silenced AS
  36563. SELECT feature.feature_id AS silenced_id,
  36564. feature.feature_id,
  36565. feature.dbxref_id,
  36566. feature.organism_id,
  36567. feature.name,
  36568. feature.uniquename,
  36569. feature.residues,
  36570. feature.seqlen,
  36571. feature.md5checksum,
  36572. feature.type_id,
  36573. feature.is_analysis,
  36574. feature.is_obsolete,
  36575. feature.timeaccessioned,
  36576. feature.timelastmodified
  36577. FROM (feature
  36578. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36579. WHERE ((((((((cvterm.name)::text = 'silenced_by_DNA_modification'::text) OR ((cvterm.name)::text = 'silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'silenced'::text));
  36580. --
  36581. -- Name: silenced_by_dna_methylation; Type: VIEW; Schema: so; Owner: -
  36582. --
  36583. CREATE VIEW silenced_by_dna_methylation AS
  36584. SELECT feature.feature_id AS silenced_by_dna_methylation_id,
  36585. feature.feature_id,
  36586. feature.dbxref_id,
  36587. feature.organism_id,
  36588. feature.name,
  36589. feature.uniquename,
  36590. feature.residues,
  36591. feature.seqlen,
  36592. feature.md5checksum,
  36593. feature.type_id,
  36594. feature.is_analysis,
  36595. feature.is_obsolete,
  36596. feature.timeaccessioned,
  36597. feature.timelastmodified
  36598. FROM (feature
  36599. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36600. WHERE ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text);
  36601. --
  36602. -- Name: silenced_by_dna_modification; Type: VIEW; Schema: so; Owner: -
  36603. --
  36604. CREATE VIEW silenced_by_dna_modification AS
  36605. SELECT feature.feature_id AS silenced_by_dna_modification_id,
  36606. feature.feature_id,
  36607. feature.dbxref_id,
  36608. feature.organism_id,
  36609. feature.name,
  36610. feature.uniquename,
  36611. feature.residues,
  36612. feature.seqlen,
  36613. feature.md5checksum,
  36614. feature.type_id,
  36615. feature.is_analysis,
  36616. feature.is_obsolete,
  36617. feature.timeaccessioned,
  36618. feature.timelastmodified
  36619. FROM (feature
  36620. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36621. WHERE (((cvterm.name)::text = 'silenced_by_DNA_methylation'::text) OR ((cvterm.name)::text = 'silenced_by_DNA_modification'::text));
  36622. --
  36623. -- Name: silenced_by_histone_deacetylation; Type: VIEW; Schema: so; Owner: -
  36624. --
  36625. CREATE VIEW silenced_by_histone_deacetylation AS
  36626. SELECT feature.feature_id AS silenced_by_histone_deacetylation_id,
  36627. feature.feature_id,
  36628. feature.dbxref_id,
  36629. feature.organism_id,
  36630. feature.name,
  36631. feature.uniquename,
  36632. feature.residues,
  36633. feature.seqlen,
  36634. feature.md5checksum,
  36635. feature.type_id,
  36636. feature.is_analysis,
  36637. feature.is_obsolete,
  36638. feature.timeaccessioned,
  36639. feature.timelastmodified
  36640. FROM (feature
  36641. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36642. WHERE ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text);
  36643. --
  36644. -- Name: silenced_by_histone_methylation; Type: VIEW; Schema: so; Owner: -
  36645. --
  36646. CREATE VIEW silenced_by_histone_methylation AS
  36647. SELECT feature.feature_id AS silenced_by_histone_methylation_id,
  36648. feature.feature_id,
  36649. feature.dbxref_id,
  36650. feature.organism_id,
  36651. feature.name,
  36652. feature.uniquename,
  36653. feature.residues,
  36654. feature.seqlen,
  36655. feature.md5checksum,
  36656. feature.type_id,
  36657. feature.is_analysis,
  36658. feature.is_obsolete,
  36659. feature.timeaccessioned,
  36660. feature.timelastmodified
  36661. FROM (feature
  36662. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36663. WHERE ((cvterm.name)::text = 'silenced_by_histone_methylation'::text);
  36664. --
  36665. -- Name: silenced_by_histone_modification; Type: VIEW; Schema: so; Owner: -
  36666. --
  36667. CREATE VIEW silenced_by_histone_modification AS
  36668. SELECT feature.feature_id AS silenced_by_histone_modification_id,
  36669. feature.feature_id,
  36670. feature.dbxref_id,
  36671. feature.organism_id,
  36672. feature.name,
  36673. feature.uniquename,
  36674. feature.residues,
  36675. feature.seqlen,
  36676. feature.md5checksum,
  36677. feature.type_id,
  36678. feature.is_analysis,
  36679. feature.is_obsolete,
  36680. feature.timeaccessioned,
  36681. feature.timelastmodified
  36682. FROM (feature
  36683. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36684. WHERE ((((cvterm.name)::text = 'silenced_by_histone_methylation'::text) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text));
  36685. --
  36686. -- Name: silenced_by_rna_interference; Type: VIEW; Schema: so; Owner: -
  36687. --
  36688. CREATE VIEW silenced_by_rna_interference AS
  36689. SELECT feature.feature_id AS silenced_by_rna_interference_id,
  36690. feature.feature_id,
  36691. feature.dbxref_id,
  36692. feature.organism_id,
  36693. feature.name,
  36694. feature.uniquename,
  36695. feature.residues,
  36696. feature.seqlen,
  36697. feature.md5checksum,
  36698. feature.type_id,
  36699. feature.is_analysis,
  36700. feature.is_obsolete,
  36701. feature.timeaccessioned,
  36702. feature.timelastmodified
  36703. FROM (feature
  36704. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36705. WHERE ((cvterm.name)::text = 'silenced_by_RNA_interference'::text);
  36706. --
  36707. -- Name: silenced_gene; Type: VIEW; Schema: so; Owner: -
  36708. --
  36709. CREATE VIEW silenced_gene AS
  36710. SELECT feature.feature_id AS silenced_gene_id,
  36711. feature.feature_id,
  36712. feature.dbxref_id,
  36713. feature.organism_id,
  36714. feature.name,
  36715. feature.uniquename,
  36716. feature.residues,
  36717. feature.seqlen,
  36718. feature.md5checksum,
  36719. feature.type_id,
  36720. feature.is_analysis,
  36721. feature.is_obsolete,
  36722. feature.timeaccessioned,
  36723. feature.timelastmodified
  36724. FROM (feature
  36725. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36726. WHERE ((((((((cvterm.name)::text = 'gene_silenced_by_DNA_modification'::text) OR ((cvterm.name)::text = 'gene_silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'gene_silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'silenced_gene'::text));
  36727. --
  36728. -- Name: silencer; Type: VIEW; Schema: so; Owner: -
  36729. --
  36730. CREATE VIEW silencer AS
  36731. SELECT feature.feature_id AS silencer_id,
  36732. feature.feature_id,
  36733. feature.dbxref_id,
  36734. feature.organism_id,
  36735. feature.name,
  36736. feature.uniquename,
  36737. feature.residues,
  36738. feature.seqlen,
  36739. feature.md5checksum,
  36740. feature.type_id,
  36741. feature.is_analysis,
  36742. feature.is_obsolete,
  36743. feature.timeaccessioned,
  36744. feature.timelastmodified
  36745. FROM (feature
  36746. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36747. WHERE ((cvterm.name)::text = 'silencer'::text);
  36748. --
  36749. -- Name: silent_mutation; Type: VIEW; Schema: so; Owner: -
  36750. --
  36751. CREATE VIEW silent_mutation AS
  36752. SELECT feature.feature_id AS silent_mutation_id,
  36753. feature.feature_id,
  36754. feature.dbxref_id,
  36755. feature.organism_id,
  36756. feature.name,
  36757. feature.uniquename,
  36758. feature.residues,
  36759. feature.seqlen,
  36760. feature.md5checksum,
  36761. feature.type_id,
  36762. feature.is_analysis,
  36763. feature.is_obsolete,
  36764. feature.timeaccessioned,
  36765. feature.timelastmodified
  36766. FROM (feature
  36767. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36768. WHERE ((cvterm.name)::text = 'silent_mutation'::text);
  36769. --
  36770. -- Name: simple_sequence_length_variation; Type: VIEW; Schema: so; Owner: -
  36771. --
  36772. CREATE VIEW simple_sequence_length_variation AS
  36773. SELECT feature.feature_id AS simple_sequence_length_variation_id,
  36774. feature.feature_id,
  36775. feature.dbxref_id,
  36776. feature.organism_id,
  36777. feature.name,
  36778. feature.uniquename,
  36779. feature.residues,
  36780. feature.seqlen,
  36781. feature.md5checksum,
  36782. feature.type_id,
  36783. feature.is_analysis,
  36784. feature.is_obsolete,
  36785. feature.timeaccessioned,
  36786. feature.timelastmodified
  36787. FROM (feature
  36788. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36789. WHERE ((cvterm.name)::text = 'simple_sequence_length_variation'::text);
  36790. --
  36791. -- Name: sine_element; Type: VIEW; Schema: so; Owner: -
  36792. --
  36793. CREATE VIEW sine_element AS
  36794. SELECT feature.feature_id AS sine_element_id,
  36795. feature.feature_id,
  36796. feature.dbxref_id,
  36797. feature.organism_id,
  36798. feature.name,
  36799. feature.uniquename,
  36800. feature.residues,
  36801. feature.seqlen,
  36802. feature.md5checksum,
  36803. feature.type_id,
  36804. feature.is_analysis,
  36805. feature.is_obsolete,
  36806. feature.timeaccessioned,
  36807. feature.timelastmodified
  36808. FROM (feature
  36809. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36810. WHERE ((cvterm.name)::text = 'SINE_element'::text);
  36811. --
  36812. -- Name: single; Type: VIEW; Schema: so; Owner: -
  36813. --
  36814. CREATE VIEW single AS
  36815. SELECT feature.feature_id AS single_id,
  36816. feature.feature_id,
  36817. feature.dbxref_id,
  36818. feature.organism_id,
  36819. feature.name,
  36820. feature.uniquename,
  36821. feature.residues,
  36822. feature.seqlen,
  36823. feature.md5checksum,
  36824. feature.type_id,
  36825. feature.is_analysis,
  36826. feature.is_obsolete,
  36827. feature.timeaccessioned,
  36828. feature.timelastmodified
  36829. FROM (feature
  36830. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36831. WHERE ((cvterm.name)::text = 'single'::text);
  36832. --
  36833. -- Name: single_strand_restriction_enzyme_cleavage_site; Type: VIEW; Schema: so; Owner: -
  36834. --
  36835. CREATE VIEW single_strand_restriction_enzyme_cleavage_site AS
  36836. SELECT feature.feature_id AS single_strand_restriction_enzyme_cleavage_site_id,
  36837. feature.feature_id,
  36838. feature.dbxref_id,
  36839. feature.organism_id,
  36840. feature.name,
  36841. feature.uniquename,
  36842. feature.residues,
  36843. feature.seqlen,
  36844. feature.md5checksum,
  36845. feature.type_id,
  36846. feature.is_analysis,
  36847. feature.is_obsolete,
  36848. feature.timeaccessioned,
  36849. feature.timelastmodified
  36850. FROM (feature
  36851. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36852. WHERE ((((cvterm.name)::text = 'five_prime_restriction_enzyme_junction'::text) OR ((cvterm.name)::text = 'three_prime_restriction_enzyme_junction'::text)) OR ((cvterm.name)::text = 'single_strand_restriction_enzyme_cleavage_site'::text));
  36853. --
  36854. -- Name: single_stranded_cdna; Type: VIEW; Schema: so; Owner: -
  36855. --
  36856. CREATE VIEW single_stranded_cdna AS
  36857. SELECT feature.feature_id AS single_stranded_cdna_id,
  36858. feature.feature_id,
  36859. feature.dbxref_id,
  36860. feature.organism_id,
  36861. feature.name,
  36862. feature.uniquename,
  36863. feature.residues,
  36864. feature.seqlen,
  36865. feature.md5checksum,
  36866. feature.type_id,
  36867. feature.is_analysis,
  36868. feature.is_obsolete,
  36869. feature.timeaccessioned,
  36870. feature.timelastmodified
  36871. FROM (feature
  36872. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36873. WHERE ((cvterm.name)::text = 'single_stranded_cDNA'::text);
  36874. --
  36875. -- Name: single_stranded_dna_chromosome; Type: VIEW; Schema: so; Owner: -
  36876. --
  36877. CREATE VIEW single_stranded_dna_chromosome AS
  36878. SELECT feature.feature_id AS single_stranded_dna_chromosome_id,
  36879. feature.feature_id,
  36880. feature.dbxref_id,
  36881. feature.organism_id,
  36882. feature.name,
  36883. feature.uniquename,
  36884. feature.residues,
  36885. feature.seqlen,
  36886. feature.md5checksum,
  36887. feature.type_id,
  36888. feature.is_analysis,
  36889. feature.is_obsolete,
  36890. feature.timeaccessioned,
  36891. feature.timelastmodified
  36892. FROM (feature
  36893. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36894. WHERE ((((cvterm.name)::text = 'linear_single_stranded_DNA_chromosome'::text) OR ((cvterm.name)::text = 'circular_single_stranded_DNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_DNA_chromosome'::text));
  36895. --
  36896. -- Name: single_stranded_rna_chromosome; Type: VIEW; Schema: so; Owner: -
  36897. --
  36898. CREATE VIEW single_stranded_rna_chromosome AS
  36899. SELECT feature.feature_id AS single_stranded_rna_chromosome_id,
  36900. feature.feature_id,
  36901. feature.dbxref_id,
  36902. feature.organism_id,
  36903. feature.name,
  36904. feature.uniquename,
  36905. feature.residues,
  36906. feature.seqlen,
  36907. feature.md5checksum,
  36908. feature.type_id,
  36909. feature.is_analysis,
  36910. feature.is_obsolete,
  36911. feature.timeaccessioned,
  36912. feature.timelastmodified
  36913. FROM (feature
  36914. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36915. WHERE ((((cvterm.name)::text = 'linear_single_stranded_RNA_chromosome'::text) OR ((cvterm.name)::text = 'circular_single_stranded_RNA_chromosome'::text)) OR ((cvterm.name)::text = 'single_stranded_RNA_chromosome'::text));
  36916. --
  36917. -- Name: sirna; Type: VIEW; Schema: so; Owner: -
  36918. --
  36919. CREATE VIEW sirna AS
  36920. SELECT feature.feature_id AS sirna_id,
  36921. feature.feature_id,
  36922. feature.dbxref_id,
  36923. feature.organism_id,
  36924. feature.name,
  36925. feature.uniquename,
  36926. feature.residues,
  36927. feature.seqlen,
  36928. feature.md5checksum,
  36929. feature.type_id,
  36930. feature.is_analysis,
  36931. feature.is_obsolete,
  36932. feature.timeaccessioned,
  36933. feature.timelastmodified
  36934. FROM (feature
  36935. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36936. WHERE ((cvterm.name)::text = 'siRNA'::text);
  36937. --
  36938. -- Name: site_specific_recombination_target_region; Type: VIEW; Schema: so; Owner: -
  36939. --
  36940. CREATE VIEW site_specific_recombination_target_region AS
  36941. SELECT feature.feature_id AS site_specific_recombination_target_region_id,
  36942. feature.feature_id,
  36943. feature.dbxref_id,
  36944. feature.organism_id,
  36945. feature.name,
  36946. feature.uniquename,
  36947. feature.residues,
  36948. feature.seqlen,
  36949. feature.md5checksum,
  36950. feature.type_id,
  36951. feature.is_analysis,
  36952. feature.is_obsolete,
  36953. feature.timeaccessioned,
  36954. feature.timelastmodified
  36955. FROM (feature
  36956. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36957. WHERE ((((((((((((((((((cvterm.name)::text = 'integration_excision_site'::text) OR ((cvterm.name)::text = 'resolution_site'::text)) OR ((cvterm.name)::text = 'inversion_site'::text)) OR ((cvterm.name)::text = 'inversion_site_part'::text)) OR ((cvterm.name)::text = 'attI_site'::text)) OR ((cvterm.name)::text = 'attP_site'::text)) OR ((cvterm.name)::text = 'attB_site'::text)) OR ((cvterm.name)::text = 'attL_site'::text)) OR ((cvterm.name)::text = 'attR_site'::text)) OR ((cvterm.name)::text = 'attC_site'::text)) OR ((cvterm.name)::text = 'attCtn_site'::text)) OR ((cvterm.name)::text = 'loxP_site'::text)) OR ((cvterm.name)::text = 'dif_site'::text)) OR ((cvterm.name)::text = 'FRT_site'::text)) OR ((cvterm.name)::text = 'IRLinv_site'::text)) OR ((cvterm.name)::text = 'IRRinv_site'::text)) OR ((cvterm.name)::text = 'site_specific_recombination_target_region'::text));
  36958. --
  36959. -- Name: sl10_accceptor_site; Type: VIEW; Schema: so; Owner: -
  36960. --
  36961. CREATE VIEW sl10_accceptor_site AS
  36962. SELECT feature.feature_id AS sl10_accceptor_site_id,
  36963. feature.feature_id,
  36964. feature.dbxref_id,
  36965. feature.organism_id,
  36966. feature.name,
  36967. feature.uniquename,
  36968. feature.residues,
  36969. feature.seqlen,
  36970. feature.md5checksum,
  36971. feature.type_id,
  36972. feature.is_analysis,
  36973. feature.is_obsolete,
  36974. feature.timeaccessioned,
  36975. feature.timelastmodified
  36976. FROM (feature
  36977. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36978. WHERE ((cvterm.name)::text = 'SL10_accceptor_site'::text);
  36979. --
  36980. -- Name: sl11_acceptor_site; Type: VIEW; Schema: so; Owner: -
  36981. --
  36982. CREATE VIEW sl11_acceptor_site AS
  36983. SELECT feature.feature_id AS sl11_acceptor_site_id,
  36984. feature.feature_id,
  36985. feature.dbxref_id,
  36986. feature.organism_id,
  36987. feature.name,
  36988. feature.uniquename,
  36989. feature.residues,
  36990. feature.seqlen,
  36991. feature.md5checksum,
  36992. feature.type_id,
  36993. feature.is_analysis,
  36994. feature.is_obsolete,
  36995. feature.timeaccessioned,
  36996. feature.timelastmodified
  36997. FROM (feature
  36998. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  36999. WHERE ((cvterm.name)::text = 'SL11_acceptor_site'::text);
  37000. --
  37001. -- Name: sl12_acceptor_site; Type: VIEW; Schema: so; Owner: -
  37002. --
  37003. CREATE VIEW sl12_acceptor_site AS
  37004. SELECT feature.feature_id AS sl12_acceptor_site_id,
  37005. feature.feature_id,
  37006. feature.dbxref_id,
  37007. feature.organism_id,
  37008. feature.name,
  37009. feature.uniquename,
  37010. feature.residues,
  37011. feature.seqlen,
  37012. feature.md5checksum,
  37013. feature.type_id,
  37014. feature.is_analysis,
  37015. feature.is_obsolete,
  37016. feature.timeaccessioned,
  37017. feature.timelastmodified
  37018. FROM (feature
  37019. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37020. WHERE ((cvterm.name)::text = 'SL12_acceptor_site'::text);
  37021. --
  37022. -- Name: sl1_acceptor_site; Type: VIEW; Schema: so; Owner: -
  37023. --
  37024. CREATE VIEW sl1_acceptor_site AS
  37025. SELECT feature.feature_id AS sl1_acceptor_site_id,
  37026. feature.feature_id,
  37027. feature.dbxref_id,
  37028. feature.organism_id,
  37029. feature.name,
  37030. feature.uniquename,
  37031. feature.residues,
  37032. feature.seqlen,
  37033. feature.md5checksum,
  37034. feature.type_id,
  37035. feature.is_analysis,
  37036. feature.is_obsolete,
  37037. feature.timeaccessioned,
  37038. feature.timelastmodified
  37039. FROM (feature
  37040. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37041. WHERE ((cvterm.name)::text = 'SL1_acceptor_site'::text);
  37042. --
  37043. -- Name: sl2_acceptor_site; Type: VIEW; Schema: so; Owner: -
  37044. --
  37045. CREATE VIEW sl2_acceptor_site AS
  37046. SELECT feature.feature_id AS sl2_acceptor_site_id,
  37047. feature.feature_id,
  37048. feature.dbxref_id,
  37049. feature.organism_id,
  37050. feature.name,
  37051. feature.uniquename,
  37052. feature.residues,
  37053. feature.seqlen,
  37054. feature.md5checksum,
  37055. feature.type_id,
  37056. feature.is_analysis,
  37057. feature.is_obsolete,
  37058. feature.timeaccessioned,
  37059. feature.timelastmodified
  37060. FROM (feature
  37061. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37062. WHERE ((((((((((((cvterm.name)::text = 'SL3_acceptor_site'::text) OR ((cvterm.name)::text = 'SL4_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL5_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL6_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL7_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL8_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL9_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL10_accceptor_site'::text)) OR ((cvterm.name)::text = 'SL11_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL12_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL2_acceptor_site'::text));
  37063. --
  37064. -- Name: sl3_acceptor_site; Type: VIEW; Schema: so; Owner: -
  37065. --
  37066. CREATE VIEW sl3_acceptor_site AS
  37067. SELECT feature.feature_id AS sl3_acceptor_site_id,
  37068. feature.feature_id,
  37069. feature.dbxref_id,
  37070. feature.organism_id,
  37071. feature.name,
  37072. feature.uniquename,
  37073. feature.residues,
  37074. feature.seqlen,
  37075. feature.md5checksum,
  37076. feature.type_id,
  37077. feature.is_analysis,
  37078. feature.is_obsolete,
  37079. feature.timeaccessioned,
  37080. feature.timelastmodified
  37081. FROM (feature
  37082. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37083. WHERE ((cvterm.name)::text = 'SL3_acceptor_site'::text);
  37084. --
  37085. -- Name: sl4_acceptor_site; Type: VIEW; Schema: so; Owner: -
  37086. --
  37087. CREATE VIEW sl4_acceptor_site AS
  37088. SELECT feature.feature_id AS sl4_acceptor_site_id,
  37089. feature.feature_id,
  37090. feature.dbxref_id,
  37091. feature.organism_id,
  37092. feature.name,
  37093. feature.uniquename,
  37094. feature.residues,
  37095. feature.seqlen,
  37096. feature.md5checksum,
  37097. feature.type_id,
  37098. feature.is_analysis,
  37099. feature.is_obsolete,
  37100. feature.timeaccessioned,
  37101. feature.timelastmodified
  37102. FROM (feature
  37103. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37104. WHERE ((cvterm.name)::text = 'SL4_acceptor_site'::text);
  37105. --
  37106. -- Name: sl5_acceptor_site; Type: VIEW; Schema: so; Owner: -
  37107. --
  37108. CREATE VIEW sl5_acceptor_site AS
  37109. SELECT feature.feature_id AS sl5_acceptor_site_id,
  37110. feature.feature_id,
  37111. feature.dbxref_id,
  37112. feature.organism_id,
  37113. feature.name,
  37114. feature.uniquename,
  37115. feature.residues,
  37116. feature.seqlen,
  37117. feature.md5checksum,
  37118. feature.type_id,
  37119. feature.is_analysis,
  37120. feature.is_obsolete,
  37121. feature.timeaccessioned,
  37122. feature.timelastmodified
  37123. FROM (feature
  37124. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37125. WHERE ((cvterm.name)::text = 'SL5_acceptor_site'::text);
  37126. --
  37127. -- Name: sl6_acceptor_site; Type: VIEW; Schema: so; Owner: -
  37128. --
  37129. CREATE VIEW sl6_acceptor_site AS
  37130. SELECT feature.feature_id AS sl6_acceptor_site_id,
  37131. feature.feature_id,
  37132. feature.dbxref_id,
  37133. feature.organism_id,
  37134. feature.name,
  37135. feature.uniquename,
  37136. feature.residues,
  37137. feature.seqlen,
  37138. feature.md5checksum,
  37139. feature.type_id,
  37140. feature.is_analysis,
  37141. feature.is_obsolete,
  37142. feature.timeaccessioned,
  37143. feature.timelastmodified
  37144. FROM (feature
  37145. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37146. WHERE ((cvterm.name)::text = 'SL6_acceptor_site'::text);
  37147. --
  37148. -- Name: sl7_acceptor_site; Type: VIEW; Schema: so; Owner: -
  37149. --
  37150. CREATE VIEW sl7_acceptor_site AS
  37151. SELECT feature.feature_id AS sl7_acceptor_site_id,
  37152. feature.feature_id,
  37153. feature.dbxref_id,
  37154. feature.organism_id,
  37155. feature.name,
  37156. feature.uniquename,
  37157. feature.residues,
  37158. feature.seqlen,
  37159. feature.md5checksum,
  37160. feature.type_id,
  37161. feature.is_analysis,
  37162. feature.is_obsolete,
  37163. feature.timeaccessioned,
  37164. feature.timelastmodified
  37165. FROM (feature
  37166. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37167. WHERE ((cvterm.name)::text = 'SL7_acceptor_site'::text);
  37168. --
  37169. -- Name: sl8_acceptor_site; Type: VIEW; Schema: so; Owner: -
  37170. --
  37171. CREATE VIEW sl8_acceptor_site AS
  37172. SELECT feature.feature_id AS sl8_acceptor_site_id,
  37173. feature.feature_id,
  37174. feature.dbxref_id,
  37175. feature.organism_id,
  37176. feature.name,
  37177. feature.uniquename,
  37178. feature.residues,
  37179. feature.seqlen,
  37180. feature.md5checksum,
  37181. feature.type_id,
  37182. feature.is_analysis,
  37183. feature.is_obsolete,
  37184. feature.timeaccessioned,
  37185. feature.timelastmodified
  37186. FROM (feature
  37187. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37188. WHERE ((cvterm.name)::text = 'SL8_acceptor_site'::text);
  37189. --
  37190. -- Name: sl9_acceptor_site; Type: VIEW; Schema: so; Owner: -
  37191. --
  37192. CREATE VIEW sl9_acceptor_site AS
  37193. SELECT feature.feature_id AS sl9_acceptor_site_id,
  37194. feature.feature_id,
  37195. feature.dbxref_id,
  37196. feature.organism_id,
  37197. feature.name,
  37198. feature.uniquename,
  37199. feature.residues,
  37200. feature.seqlen,
  37201. feature.md5checksum,
  37202. feature.type_id,
  37203. feature.is_analysis,
  37204. feature.is_obsolete,
  37205. feature.timeaccessioned,
  37206. feature.timelastmodified
  37207. FROM (feature
  37208. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37209. WHERE ((cvterm.name)::text = 'SL9_acceptor_site'::text);
  37210. --
  37211. -- Name: small_regulatory_ncrna; Type: VIEW; Schema: so; Owner: -
  37212. --
  37213. CREATE VIEW small_regulatory_ncrna AS
  37214. SELECT feature.feature_id AS small_regulatory_ncrna_id,
  37215. feature.feature_id,
  37216. feature.dbxref_id,
  37217. feature.organism_id,
  37218. feature.name,
  37219. feature.uniquename,
  37220. feature.residues,
  37221. feature.seqlen,
  37222. feature.md5checksum,
  37223. feature.type_id,
  37224. feature.is_analysis,
  37225. feature.is_obsolete,
  37226. feature.timeaccessioned,
  37227. feature.timelastmodified
  37228. FROM (feature
  37229. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37230. WHERE ((((((((((((cvterm.name)::text = 'miRNA'::text) OR ((cvterm.name)::text = 'RNA_6S'::text)) OR ((cvterm.name)::text = 'CsrB_RsmB_RNA'::text)) OR ((cvterm.name)::text = 'DsrA_RNA'::text)) OR ((cvterm.name)::text = 'OxyS_RNA'::text)) OR ((cvterm.name)::text = 'RprA_RNA'::text)) OR ((cvterm.name)::text = 'RRE_RNA'::text)) OR ((cvterm.name)::text = 'spot_42_RNA'::text)) OR ((cvterm.name)::text = 'tmRNA'::text)) OR ((cvterm.name)::text = 'GcvB_RNA'::text)) OR ((cvterm.name)::text = 'small_regulatory_ncRNA'::text));
  37231. --
  37232. -- Name: small_subunit_rrna; Type: VIEW; Schema: so; Owner: -
  37233. --
  37234. CREATE VIEW small_subunit_rrna AS
  37235. SELECT feature.feature_id AS small_subunit_rrna_id,
  37236. feature.feature_id,
  37237. feature.dbxref_id,
  37238. feature.organism_id,
  37239. feature.name,
  37240. feature.uniquename,
  37241. feature.residues,
  37242. feature.seqlen,
  37243. feature.md5checksum,
  37244. feature.type_id,
  37245. feature.is_analysis,
  37246. feature.is_obsolete,
  37247. feature.timeaccessioned,
  37248. feature.timelastmodified
  37249. FROM (feature
  37250. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37251. WHERE ((((cvterm.name)::text = 'rRNA_18S'::text) OR ((cvterm.name)::text = 'rRNA_16S'::text)) OR ((cvterm.name)::text = 'small_subunit_rRNA'::text));
  37252. --
  37253. -- Name: snorna; Type: VIEW; Schema: so; Owner: -
  37254. --
  37255. CREATE VIEW snorna AS
  37256. SELECT feature.feature_id AS snorna_id,
  37257. feature.feature_id,
  37258. feature.dbxref_id,
  37259. feature.organism_id,
  37260. feature.name,
  37261. feature.uniquename,
  37262. feature.residues,
  37263. feature.seqlen,
  37264. feature.md5checksum,
  37265. feature.type_id,
  37266. feature.is_analysis,
  37267. feature.is_obsolete,
  37268. feature.timeaccessioned,
  37269. feature.timelastmodified
  37270. FROM (feature
  37271. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37272. WHERE ((((((((cvterm.name)::text = 'C_D_box_snoRNA'::text) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA'::text)) OR ((cvterm.name)::text = 'U14_snoRNA'::text)) OR ((cvterm.name)::text = 'U3_snoRNA'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'pseudouridylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'snoRNA'::text));
  37273. --
  37274. -- Name: snorna_encoding; Type: VIEW; Schema: so; Owner: -
  37275. --
  37276. CREATE VIEW snorna_encoding AS
  37277. SELECT feature.feature_id AS snorna_encoding_id,
  37278. feature.feature_id,
  37279. feature.dbxref_id,
  37280. feature.organism_id,
  37281. feature.name,
  37282. feature.uniquename,
  37283. feature.residues,
  37284. feature.seqlen,
  37285. feature.md5checksum,
  37286. feature.type_id,
  37287. feature.is_analysis,
  37288. feature.is_obsolete,
  37289. feature.timeaccessioned,
  37290. feature.timelastmodified
  37291. FROM (feature
  37292. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37293. WHERE ((((cvterm.name)::text = 'C_D_box_snoRNA_encoding'::text) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_encoding'::text)) OR ((cvterm.name)::text = 'snoRNA_encoding'::text));
  37294. --
  37295. -- Name: snorna_gene; Type: VIEW; Schema: so; Owner: -
  37296. --
  37297. CREATE VIEW snorna_gene AS
  37298. SELECT feature.feature_id AS snorna_gene_id,
  37299. feature.feature_id,
  37300. feature.dbxref_id,
  37301. feature.organism_id,
  37302. feature.name,
  37303. feature.uniquename,
  37304. feature.residues,
  37305. feature.seqlen,
  37306. feature.md5checksum,
  37307. feature.type_id,
  37308. feature.is_analysis,
  37309. feature.is_obsolete,
  37310. feature.timeaccessioned,
  37311. feature.timelastmodified
  37312. FROM (feature
  37313. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37314. WHERE ((cvterm.name)::text = 'snoRNA_gene'::text);
  37315. --
  37316. -- Name: snorna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  37317. --
  37318. CREATE VIEW snorna_primary_transcript AS
  37319. SELECT feature.feature_id AS snorna_primary_transcript_id,
  37320. feature.feature_id,
  37321. feature.dbxref_id,
  37322. feature.organism_id,
  37323. feature.name,
  37324. feature.uniquename,
  37325. feature.residues,
  37326. feature.seqlen,
  37327. feature.md5checksum,
  37328. feature.type_id,
  37329. feature.is_analysis,
  37330. feature.is_obsolete,
  37331. feature.timeaccessioned,
  37332. feature.timelastmodified
  37333. FROM (feature
  37334. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37335. WHERE (((((((cvterm.name)::text = 'methylation_guide_snoRNA_primary_transcript'::text) OR ((cvterm.name)::text = 'rRNA_cleavage_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'U14_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snoRNA_primary_transcript'::text));
  37336. --
  37337. -- Name: snp; Type: VIEW; Schema: so; Owner: -
  37338. --
  37339. CREATE VIEW snp AS
  37340. SELECT feature.feature_id AS snp_id,
  37341. feature.feature_id,
  37342. feature.dbxref_id,
  37343. feature.organism_id,
  37344. feature.name,
  37345. feature.uniquename,
  37346. feature.residues,
  37347. feature.seqlen,
  37348. feature.md5checksum,
  37349. feature.type_id,
  37350. feature.is_analysis,
  37351. feature.is_obsolete,
  37352. feature.timeaccessioned,
  37353. feature.timelastmodified
  37354. FROM (feature
  37355. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37356. WHERE ((cvterm.name)::text = 'SNP'::text);
  37357. --
  37358. -- Name: snrna; Type: VIEW; Schema: so; Owner: -
  37359. --
  37360. CREATE VIEW snrna AS
  37361. SELECT feature.feature_id AS snrna_id,
  37362. feature.feature_id,
  37363. feature.dbxref_id,
  37364. feature.organism_id,
  37365. feature.name,
  37366. feature.uniquename,
  37367. feature.residues,
  37368. feature.seqlen,
  37369. feature.md5checksum,
  37370. feature.type_id,
  37371. feature.is_analysis,
  37372. feature.is_obsolete,
  37373. feature.timeaccessioned,
  37374. feature.timelastmodified
  37375. FROM (feature
  37376. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37377. WHERE (((((((((((cvterm.name)::text = 'U1_snRNA'::text) OR ((cvterm.name)::text = 'U2_snRNA'::text)) OR ((cvterm.name)::text = 'U4_snRNA'::text)) OR ((cvterm.name)::text = 'U4atac_snRNA'::text)) OR ((cvterm.name)::text = 'U5_snRNA'::text)) OR ((cvterm.name)::text = 'U6_snRNA'::text)) OR ((cvterm.name)::text = 'U6atac_snRNA'::text)) OR ((cvterm.name)::text = 'U11_snRNA'::text)) OR ((cvterm.name)::text = 'U12_snRNA'::text)) OR ((cvterm.name)::text = 'snRNA'::text));
  37378. --
  37379. -- Name: snrna_encoding; Type: VIEW; Schema: so; Owner: -
  37380. --
  37381. CREATE VIEW snrna_encoding AS
  37382. SELECT feature.feature_id AS snrna_encoding_id,
  37383. feature.feature_id,
  37384. feature.dbxref_id,
  37385. feature.organism_id,
  37386. feature.name,
  37387. feature.uniquename,
  37388. feature.residues,
  37389. feature.seqlen,
  37390. feature.md5checksum,
  37391. feature.type_id,
  37392. feature.is_analysis,
  37393. feature.is_obsolete,
  37394. feature.timeaccessioned,
  37395. feature.timelastmodified
  37396. FROM (feature
  37397. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37398. WHERE ((cvterm.name)::text = 'snRNA_encoding'::text);
  37399. --
  37400. -- Name: snrna_gene; Type: VIEW; Schema: so; Owner: -
  37401. --
  37402. CREATE VIEW snrna_gene AS
  37403. SELECT feature.feature_id AS snrna_gene_id,
  37404. feature.feature_id,
  37405. feature.dbxref_id,
  37406. feature.organism_id,
  37407. feature.name,
  37408. feature.uniquename,
  37409. feature.residues,
  37410. feature.seqlen,
  37411. feature.md5checksum,
  37412. feature.type_id,
  37413. feature.is_analysis,
  37414. feature.is_obsolete,
  37415. feature.timeaccessioned,
  37416. feature.timelastmodified
  37417. FROM (feature
  37418. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37419. WHERE ((cvterm.name)::text = 'snRNA_gene'::text);
  37420. --
  37421. -- Name: snrna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  37422. --
  37423. CREATE VIEW snrna_primary_transcript AS
  37424. SELECT feature.feature_id AS snrna_primary_transcript_id,
  37425. feature.feature_id,
  37426. feature.dbxref_id,
  37427. feature.organism_id,
  37428. feature.name,
  37429. feature.uniquename,
  37430. feature.residues,
  37431. feature.seqlen,
  37432. feature.md5checksum,
  37433. feature.type_id,
  37434. feature.is_analysis,
  37435. feature.is_obsolete,
  37436. feature.timeaccessioned,
  37437. feature.timelastmodified
  37438. FROM (feature
  37439. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37440. WHERE ((cvterm.name)::text = 'snRNA_primary_transcript'::text);
  37441. --
  37442. -- Name: snv; Type: VIEW; Schema: so; Owner: -
  37443. --
  37444. CREATE VIEW snv AS
  37445. SELECT feature.feature_id AS snv_id,
  37446. feature.feature_id,
  37447. feature.dbxref_id,
  37448. feature.organism_id,
  37449. feature.name,
  37450. feature.uniquename,
  37451. feature.residues,
  37452. feature.seqlen,
  37453. feature.md5checksum,
  37454. feature.type_id,
  37455. feature.is_analysis,
  37456. feature.is_obsolete,
  37457. feature.timeaccessioned,
  37458. feature.timelastmodified
  37459. FROM (feature
  37460. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37461. WHERE (((((((((((((((((((((((cvterm.name)::text = 'SNP'::text) OR ((cvterm.name)::text = 'point_mutation'::text)) OR ((cvterm.name)::text = 'transition'::text)) OR ((cvterm.name)::text = 'transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'SNV'::text));
  37462. --
  37463. -- Name: so_foreign; Type: VIEW; Schema: so; Owner: -
  37464. --
  37465. CREATE VIEW so_foreign AS
  37466. SELECT feature.feature_id AS so_foreign_id,
  37467. feature.feature_id,
  37468. feature.dbxref_id,
  37469. feature.organism_id,
  37470. feature.name,
  37471. feature.uniquename,
  37472. feature.residues,
  37473. feature.seqlen,
  37474. feature.md5checksum,
  37475. feature.type_id,
  37476. feature.is_analysis,
  37477. feature.is_obsolete,
  37478. feature.timeaccessioned,
  37479. feature.timelastmodified
  37480. FROM (feature
  37481. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37482. WHERE ((cvterm.name)::text = 'foreign'::text);
  37483. --
  37484. -- Name: so_genotype; Type: VIEW; Schema: so; Owner: -
  37485. --
  37486. CREATE VIEW so_genotype AS
  37487. SELECT feature.feature_id AS so_genotype_id,
  37488. feature.feature_id,
  37489. feature.dbxref_id,
  37490. feature.organism_id,
  37491. feature.name,
  37492. feature.uniquename,
  37493. feature.residues,
  37494. feature.seqlen,
  37495. feature.md5checksum,
  37496. feature.type_id,
  37497. feature.is_analysis,
  37498. feature.is_obsolete,
  37499. feature.timeaccessioned,
  37500. feature.timelastmodified
  37501. FROM (feature
  37502. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37503. WHERE ((cvterm.name)::text = 'genotype'::text);
  37504. --
  37505. -- Name: so_natural; Type: VIEW; Schema: so; Owner: -
  37506. --
  37507. CREATE VIEW so_natural AS
  37508. SELECT feature.feature_id AS so_natural_id,
  37509. feature.feature_id,
  37510. feature.dbxref_id,
  37511. feature.organism_id,
  37512. feature.name,
  37513. feature.uniquename,
  37514. feature.residues,
  37515. feature.seqlen,
  37516. feature.md5checksum,
  37517. feature.type_id,
  37518. feature.is_analysis,
  37519. feature.is_obsolete,
  37520. feature.timeaccessioned,
  37521. feature.timelastmodified
  37522. FROM (feature
  37523. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37524. WHERE ((cvterm.name)::text = 'natural'::text);
  37525. --
  37526. -- Name: solo_ltr; Type: VIEW; Schema: so; Owner: -
  37527. --
  37528. CREATE VIEW solo_ltr AS
  37529. SELECT feature.feature_id AS solo_ltr_id,
  37530. feature.feature_id,
  37531. feature.dbxref_id,
  37532. feature.organism_id,
  37533. feature.name,
  37534. feature.uniquename,
  37535. feature.residues,
  37536. feature.seqlen,
  37537. feature.md5checksum,
  37538. feature.type_id,
  37539. feature.is_analysis,
  37540. feature.is_obsolete,
  37541. feature.timeaccessioned,
  37542. feature.timelastmodified
  37543. FROM (feature
  37544. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37545. WHERE ((cvterm.name)::text = 'solo_LTR'::text);
  37546. --
  37547. -- Name: somatic_variant; Type: VIEW; Schema: so; Owner: -
  37548. --
  37549. CREATE VIEW somatic_variant AS
  37550. SELECT feature.feature_id AS somatic_variant_id,
  37551. feature.feature_id,
  37552. feature.dbxref_id,
  37553. feature.organism_id,
  37554. feature.name,
  37555. feature.uniquename,
  37556. feature.residues,
  37557. feature.seqlen,
  37558. feature.md5checksum,
  37559. feature.type_id,
  37560. feature.is_analysis,
  37561. feature.is_obsolete,
  37562. feature.timeaccessioned,
  37563. feature.timelastmodified
  37564. FROM (feature
  37565. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37566. WHERE ((cvterm.name)::text = 'somatic_variant'::text);
  37567. --
  37568. -- Name: sonicate_fragment; Type: VIEW; Schema: so; Owner: -
  37569. --
  37570. CREATE VIEW sonicate_fragment AS
  37571. SELECT feature.feature_id AS sonicate_fragment_id,
  37572. feature.feature_id,
  37573. feature.dbxref_id,
  37574. feature.organism_id,
  37575. feature.name,
  37576. feature.uniquename,
  37577. feature.residues,
  37578. feature.seqlen,
  37579. feature.md5checksum,
  37580. feature.type_id,
  37581. feature.is_analysis,
  37582. feature.is_obsolete,
  37583. feature.timeaccessioned,
  37584. feature.timelastmodified
  37585. FROM (feature
  37586. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37587. WHERE ((cvterm.name)::text = 'sonicate_fragment'::text);
  37588. --
  37589. -- Name: sp6_rna_polymerase_promoter; Type: VIEW; Schema: so; Owner: -
  37590. --
  37591. CREATE VIEW sp6_rna_polymerase_promoter AS
  37592. SELECT feature.feature_id AS sp6_rna_polymerase_promoter_id,
  37593. feature.feature_id,
  37594. feature.dbxref_id,
  37595. feature.organism_id,
  37596. feature.name,
  37597. feature.uniquename,
  37598. feature.residues,
  37599. feature.seqlen,
  37600. feature.md5checksum,
  37601. feature.type_id,
  37602. feature.is_analysis,
  37603. feature.is_obsolete,
  37604. feature.timeaccessioned,
  37605. feature.timelastmodified
  37606. FROM (feature
  37607. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37608. WHERE ((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text);
  37609. --
  37610. -- Name: specific_recombination_site; Type: VIEW; Schema: so; Owner: -
  37611. --
  37612. CREATE VIEW specific_recombination_site AS
  37613. SELECT feature.feature_id AS specific_recombination_site_id,
  37614. feature.feature_id,
  37615. feature.dbxref_id,
  37616. feature.organism_id,
  37617. feature.name,
  37618. feature.uniquename,
  37619. feature.residues,
  37620. feature.seqlen,
  37621. feature.md5checksum,
  37622. feature.type_id,
  37623. feature.is_analysis,
  37624. feature.is_obsolete,
  37625. feature.timeaccessioned,
  37626. feature.timelastmodified
  37627. FROM (feature
  37628. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37629. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'recombination_feature_of_rearranged_gene'::text) OR ((cvterm.name)::text = 'site_specific_recombination_target_region'::text)) OR ((cvterm.name)::text = 'recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text)) OR ((cvterm.name)::text = 'D_gene'::text)) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'three_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'VD_gene'::text)) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'integration_excision_site'::text)) OR ((cvterm.name)::text = 'resolution_site'::text)) OR ((cvterm.name)::text = 'inversion_site'::text)) OR ((cvterm.name)::text = 'inversion_site_part'::text)) OR ((cvterm.name)::text = 'attI_site'::text)) OR ((cvterm.name)::text = 'attP_site'::text)) OR ((cvterm.name)::text = 'attB_site'::text)) OR ((cvterm.name)::text = 'attL_site'::text)) OR ((cvterm.name)::text = 'attR_site'::text)) OR ((cvterm.name)::text = 'attC_site'::text)) OR ((cvterm.name)::text = 'attCtn_site'::text)) OR ((cvterm.name)::text = 'loxP_site'::text)) OR ((cvterm.name)::text = 'dif_site'::text)) OR ((cvterm.name)::text = 'FRT_site'::text)) OR ((cvterm.name)::text = 'IRLinv_site'::text)) OR ((cvterm.name)::text = 'IRRinv_site'::text)) OR ((cvterm.name)::text = 'specific_recombination_site'::text));
  37630. --
  37631. -- Name: splice_acceptor_variant; Type: VIEW; Schema: so; Owner: -
  37632. --
  37633. CREATE VIEW splice_acceptor_variant AS
  37634. SELECT feature.feature_id AS splice_acceptor_variant_id,
  37635. feature.feature_id,
  37636. feature.dbxref_id,
  37637. feature.organism_id,
  37638. feature.name,
  37639. feature.uniquename,
  37640. feature.residues,
  37641. feature.seqlen,
  37642. feature.md5checksum,
  37643. feature.type_id,
  37644. feature.is_analysis,
  37645. feature.is_obsolete,
  37646. feature.timeaccessioned,
  37647. feature.timelastmodified
  37648. FROM (feature
  37649. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37650. WHERE ((cvterm.name)::text = 'splice_acceptor_variant'::text);
  37651. --
  37652. -- Name: splice_donor_5th_base_variant; Type: VIEW; Schema: so; Owner: -
  37653. --
  37654. CREATE VIEW splice_donor_5th_base_variant AS
  37655. SELECT feature.feature_id AS splice_donor_5th_base_variant_id,
  37656. feature.feature_id,
  37657. feature.dbxref_id,
  37658. feature.organism_id,
  37659. feature.name,
  37660. feature.uniquename,
  37661. feature.residues,
  37662. feature.seqlen,
  37663. feature.md5checksum,
  37664. feature.type_id,
  37665. feature.is_analysis,
  37666. feature.is_obsolete,
  37667. feature.timeaccessioned,
  37668. feature.timelastmodified
  37669. FROM (feature
  37670. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37671. WHERE ((cvterm.name)::text = 'splice_donor_5th_base_variant'::text);
  37672. --
  37673. -- Name: splice_donor_variant; Type: VIEW; Schema: so; Owner: -
  37674. --
  37675. CREATE VIEW splice_donor_variant AS
  37676. SELECT feature.feature_id AS splice_donor_variant_id,
  37677. feature.feature_id,
  37678. feature.dbxref_id,
  37679. feature.organism_id,
  37680. feature.name,
  37681. feature.uniquename,
  37682. feature.residues,
  37683. feature.seqlen,
  37684. feature.md5checksum,
  37685. feature.type_id,
  37686. feature.is_analysis,
  37687. feature.is_obsolete,
  37688. feature.timeaccessioned,
  37689. feature.timelastmodified
  37690. FROM (feature
  37691. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37692. WHERE ((cvterm.name)::text = 'splice_donor_variant'::text);
  37693. --
  37694. -- Name: splice_enhancer; Type: VIEW; Schema: so; Owner: -
  37695. --
  37696. CREATE VIEW splice_enhancer AS
  37697. SELECT feature.feature_id AS splice_enhancer_id,
  37698. feature.feature_id,
  37699. feature.dbxref_id,
  37700. feature.organism_id,
  37701. feature.name,
  37702. feature.uniquename,
  37703. feature.residues,
  37704. feature.seqlen,
  37705. feature.md5checksum,
  37706. feature.type_id,
  37707. feature.is_analysis,
  37708. feature.is_obsolete,
  37709. feature.timeaccessioned,
  37710. feature.timelastmodified
  37711. FROM (feature
  37712. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37713. WHERE ((((cvterm.name)::text = 'intronic_splice_enhancer'::text) OR ((cvterm.name)::text = 'exonic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'splice_enhancer'::text));
  37714. --
  37715. -- Name: splice_junction; Type: VIEW; Schema: so; Owner: -
  37716. --
  37717. CREATE VIEW splice_junction AS
  37718. SELECT feature.feature_id AS splice_junction_id,
  37719. feature.feature_id,
  37720. feature.dbxref_id,
  37721. feature.organism_id,
  37722. feature.name,
  37723. feature.uniquename,
  37724. feature.residues,
  37725. feature.seqlen,
  37726. feature.md5checksum,
  37727. feature.type_id,
  37728. feature.is_analysis,
  37729. feature.is_obsolete,
  37730. feature.timeaccessioned,
  37731. feature.timelastmodified
  37732. FROM (feature
  37733. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37734. WHERE ((cvterm.name)::text = 'splice_junction'::text);
  37735. --
  37736. -- Name: splice_region_variant; Type: VIEW; Schema: so; Owner: -
  37737. --
  37738. CREATE VIEW splice_region_variant AS
  37739. SELECT feature.feature_id AS splice_region_variant_id,
  37740. feature.feature_id,
  37741. feature.dbxref_id,
  37742. feature.organism_id,
  37743. feature.name,
  37744. feature.uniquename,
  37745. feature.residues,
  37746. feature.seqlen,
  37747. feature.md5checksum,
  37748. feature.type_id,
  37749. feature.is_analysis,
  37750. feature.is_obsolete,
  37751. feature.timeaccessioned,
  37752. feature.timelastmodified
  37753. FROM (feature
  37754. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37755. WHERE ((cvterm.name)::text = 'splice_region_variant'::text);
  37756. --
  37757. -- Name: splice_site; Type: VIEW; Schema: so; Owner: -
  37758. --
  37759. CREATE VIEW splice_site AS
  37760. SELECT feature.feature_id AS splice_site_id,
  37761. feature.feature_id,
  37762. feature.dbxref_id,
  37763. feature.organism_id,
  37764. feature.name,
  37765. feature.uniquename,
  37766. feature.residues,
  37767. feature.seqlen,
  37768. feature.md5checksum,
  37769. feature.type_id,
  37770. feature.is_analysis,
  37771. feature.is_obsolete,
  37772. feature.timeaccessioned,
  37773. feature.timelastmodified
  37774. FROM (feature
  37775. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37776. WHERE ((((((((((((((((((((((((((cvterm.name)::text = 'cis_splice_site'::text) OR ((cvterm.name)::text = 'trans_splice_site'::text)) OR ((cvterm.name)::text = 'cryptic_splice_site'::text)) OR ((cvterm.name)::text = 'five_prime_cis_splice_site'::text)) OR ((cvterm.name)::text = 'three_prime_cis_splice_site'::text)) OR ((cvterm.name)::text = 'recursive_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'trans_splice_acceptor_site'::text)) OR ((cvterm.name)::text = 'trans_splice_donor_site'::text)) OR ((cvterm.name)::text = 'SL1_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL2_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL3_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL4_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL5_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL6_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL7_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL8_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL9_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL10_accceptor_site'::text)) OR ((cvterm.name)::text = 'SL11_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL12_acceptor_site'::text)) OR ((cvterm.name)::text = 'splice_site'::text));
  37777. --
  37778. -- Name: splice_site_variant; Type: VIEW; Schema: so; Owner: -
  37779. --
  37780. CREATE VIEW splice_site_variant AS
  37781. SELECT feature.feature_id AS splice_site_variant_id,
  37782. feature.feature_id,
  37783. feature.dbxref_id,
  37784. feature.organism_id,
  37785. feature.name,
  37786. feature.uniquename,
  37787. feature.residues,
  37788. feature.seqlen,
  37789. feature.md5checksum,
  37790. feature.type_id,
  37791. feature.is_analysis,
  37792. feature.is_obsolete,
  37793. feature.timeaccessioned,
  37794. feature.timelastmodified
  37795. FROM (feature
  37796. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37797. WHERE (((((cvterm.name)::text = 'splice_acceptor_variant'::text) OR ((cvterm.name)::text = 'splice_donor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_5th_base_variant'::text)) OR ((cvterm.name)::text = 'splice_site_variant'::text));
  37798. --
  37799. -- Name: spliced_leader_rna; Type: VIEW; Schema: so; Owner: -
  37800. --
  37801. CREATE VIEW spliced_leader_rna AS
  37802. SELECT feature.feature_id AS spliced_leader_rna_id,
  37803. feature.feature_id,
  37804. feature.dbxref_id,
  37805. feature.organism_id,
  37806. feature.name,
  37807. feature.uniquename,
  37808. feature.residues,
  37809. feature.seqlen,
  37810. feature.md5checksum,
  37811. feature.type_id,
  37812. feature.is_analysis,
  37813. feature.is_obsolete,
  37814. feature.timeaccessioned,
  37815. feature.timelastmodified
  37816. FROM (feature
  37817. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37818. WHERE ((cvterm.name)::text = 'spliced_leader_RNA'::text);
  37819. --
  37820. -- Name: spliceosomal_intron; Type: VIEW; Schema: so; Owner: -
  37821. --
  37822. CREATE VIEW spliceosomal_intron AS
  37823. SELECT feature.feature_id AS spliceosomal_intron_id,
  37824. feature.feature_id,
  37825. feature.dbxref_id,
  37826. feature.organism_id,
  37827. feature.name,
  37828. feature.uniquename,
  37829. feature.residues,
  37830. feature.seqlen,
  37831. feature.md5checksum,
  37832. feature.type_id,
  37833. feature.is_analysis,
  37834. feature.is_obsolete,
  37835. feature.timeaccessioned,
  37836. feature.timelastmodified
  37837. FROM (feature
  37838. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37839. WHERE ((((cvterm.name)::text = 'U2_intron'::text) OR ((cvterm.name)::text = 'U12_intron'::text)) OR ((cvterm.name)::text = 'spliceosomal_intron'::text));
  37840. --
  37841. -- Name: spliceosomal_intron_region; Type: VIEW; Schema: so; Owner: -
  37842. --
  37843. CREATE VIEW spliceosomal_intron_region AS
  37844. SELECT feature.feature_id AS spliceosomal_intron_region_id,
  37845. feature.feature_id,
  37846. feature.dbxref_id,
  37847. feature.organism_id,
  37848. feature.name,
  37849. feature.uniquename,
  37850. feature.residues,
  37851. feature.seqlen,
  37852. feature.md5checksum,
  37853. feature.type_id,
  37854. feature.is_analysis,
  37855. feature.is_obsolete,
  37856. feature.timeaccessioned,
  37857. feature.timelastmodified
  37858. FROM (feature
  37859. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37860. WHERE (((((cvterm.name)::text = 'intronic_splice_enhancer'::text) OR ((cvterm.name)::text = 'branch_site'::text)) OR ((cvterm.name)::text = 'polypyrimidine_tract'::text)) OR ((cvterm.name)::text = 'spliceosomal_intron_region'::text));
  37861. --
  37862. -- Name: splicing_regulatory_region; Type: VIEW; Schema: so; Owner: -
  37863. --
  37864. CREATE VIEW splicing_regulatory_region AS
  37865. SELECT feature.feature_id AS splicing_regulatory_region_id,
  37866. feature.feature_id,
  37867. feature.dbxref_id,
  37868. feature.organism_id,
  37869. feature.name,
  37870. feature.uniquename,
  37871. feature.residues,
  37872. feature.seqlen,
  37873. feature.md5checksum,
  37874. feature.type_id,
  37875. feature.is_analysis,
  37876. feature.is_obsolete,
  37877. feature.timeaccessioned,
  37878. feature.timelastmodified
  37879. FROM (feature
  37880. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37881. WHERE (((((cvterm.name)::text = 'splice_enhancer'::text) OR ((cvterm.name)::text = 'intronic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'exonic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'splicing_regulatory_region'::text));
  37882. --
  37883. -- Name: splicing_variant; Type: VIEW; Schema: so; Owner: -
  37884. --
  37885. CREATE VIEW splicing_variant AS
  37886. SELECT feature.feature_id AS splicing_variant_id,
  37887. feature.feature_id,
  37888. feature.dbxref_id,
  37889. feature.organism_id,
  37890. feature.name,
  37891. feature.uniquename,
  37892. feature.residues,
  37893. feature.seqlen,
  37894. feature.md5checksum,
  37895. feature.type_id,
  37896. feature.is_analysis,
  37897. feature.is_obsolete,
  37898. feature.timeaccessioned,
  37899. feature.timelastmodified
  37900. FROM (feature
  37901. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37902. WHERE ((((((((cvterm.name)::text = 'cryptic_splice_site_variant'::text) OR ((cvterm.name)::text = 'exon_loss'::text)) OR ((cvterm.name)::text = 'intron_gain'::text)) OR ((cvterm.name)::text = 'splice_region_variant'::text)) OR ((cvterm.name)::text = 'cryptic_splice_acceptor'::text)) OR ((cvterm.name)::text = 'cryptic_splice_donor'::text)) OR ((cvterm.name)::text = 'splicing_variant'::text));
  37903. --
  37904. -- Name: spot_42_rna; Type: VIEW; Schema: so; Owner: -
  37905. --
  37906. CREATE VIEW spot_42_rna AS
  37907. SELECT feature.feature_id AS spot_42_rna_id,
  37908. feature.feature_id,
  37909. feature.dbxref_id,
  37910. feature.organism_id,
  37911. feature.name,
  37912. feature.uniquename,
  37913. feature.residues,
  37914. feature.seqlen,
  37915. feature.md5checksum,
  37916. feature.type_id,
  37917. feature.is_analysis,
  37918. feature.is_obsolete,
  37919. feature.timeaccessioned,
  37920. feature.timelastmodified
  37921. FROM (feature
  37922. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37923. WHERE ((cvterm.name)::text = 'spot_42_RNA'::text);
  37924. --
  37925. -- Name: srp_rna; Type: VIEW; Schema: so; Owner: -
  37926. --
  37927. CREATE VIEW srp_rna AS
  37928. SELECT feature.feature_id AS srp_rna_id,
  37929. feature.feature_id,
  37930. feature.dbxref_id,
  37931. feature.organism_id,
  37932. feature.name,
  37933. feature.uniquename,
  37934. feature.residues,
  37935. feature.seqlen,
  37936. feature.md5checksum,
  37937. feature.type_id,
  37938. feature.is_analysis,
  37939. feature.is_obsolete,
  37940. feature.timeaccessioned,
  37941. feature.timelastmodified
  37942. FROM (feature
  37943. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37944. WHERE ((cvterm.name)::text = 'SRP_RNA'::text);
  37945. --
  37946. -- Name: srp_rna_encoding; Type: VIEW; Schema: so; Owner: -
  37947. --
  37948. CREATE VIEW srp_rna_encoding AS
  37949. SELECT feature.feature_id AS srp_rna_encoding_id,
  37950. feature.feature_id,
  37951. feature.dbxref_id,
  37952. feature.organism_id,
  37953. feature.name,
  37954. feature.uniquename,
  37955. feature.residues,
  37956. feature.seqlen,
  37957. feature.md5checksum,
  37958. feature.type_id,
  37959. feature.is_analysis,
  37960. feature.is_obsolete,
  37961. feature.timeaccessioned,
  37962. feature.timelastmodified
  37963. FROM (feature
  37964. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37965. WHERE ((cvterm.name)::text = 'SRP_RNA_encoding'::text);
  37966. --
  37967. -- Name: srp_rna_gene; Type: VIEW; Schema: so; Owner: -
  37968. --
  37969. CREATE VIEW srp_rna_gene AS
  37970. SELECT feature.feature_id AS srp_rna_gene_id,
  37971. feature.feature_id,
  37972. feature.dbxref_id,
  37973. feature.organism_id,
  37974. feature.name,
  37975. feature.uniquename,
  37976. feature.residues,
  37977. feature.seqlen,
  37978. feature.md5checksum,
  37979. feature.type_id,
  37980. feature.is_analysis,
  37981. feature.is_obsolete,
  37982. feature.timeaccessioned,
  37983. feature.timelastmodified
  37984. FROM (feature
  37985. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  37986. WHERE ((cvterm.name)::text = 'SRP_RNA_gene'::text);
  37987. --
  37988. -- Name: srp_rna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  37989. --
  37990. CREATE VIEW srp_rna_primary_transcript AS
  37991. SELECT feature.feature_id AS srp_rna_primary_transcript_id,
  37992. feature.feature_id,
  37993. feature.dbxref_id,
  37994. feature.organism_id,
  37995. feature.name,
  37996. feature.uniquename,
  37997. feature.residues,
  37998. feature.seqlen,
  37999. feature.md5checksum,
  38000. feature.type_id,
  38001. feature.is_analysis,
  38002. feature.is_obsolete,
  38003. feature.timeaccessioned,
  38004. feature.timelastmodified
  38005. FROM (feature
  38006. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38007. WHERE ((cvterm.name)::text = 'SRP_RNA_primary_transcript'::text);
  38008. --
  38009. -- Name: ss_oligo; Type: VIEW; Schema: so; Owner: -
  38010. --
  38011. CREATE VIEW ss_oligo AS
  38012. SELECT feature.feature_id AS ss_oligo_id,
  38013. feature.feature_id,
  38014. feature.dbxref_id,
  38015. feature.organism_id,
  38016. feature.name,
  38017. feature.uniquename,
  38018. feature.residues,
  38019. feature.seqlen,
  38020. feature.md5checksum,
  38021. feature.type_id,
  38022. feature.is_analysis,
  38023. feature.is_obsolete,
  38024. feature.timeaccessioned,
  38025. feature.timelastmodified
  38026. FROM (feature
  38027. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38028. WHERE ((((((((cvterm.name)::text = 'primer'::text) OR ((cvterm.name)::text = 'sequencing_primer'::text)) OR ((cvterm.name)::text = 'forward_primer'::text)) OR ((cvterm.name)::text = 'reverse_primer'::text)) OR ((cvterm.name)::text = 'ASPE_primer'::text)) OR ((cvterm.name)::text = 'dCAPS_primer'::text)) OR ((cvterm.name)::text = 'ss_oligo'::text));
  38029. --
  38030. -- Name: ss_rna_viral_sequence; Type: VIEW; Schema: so; Owner: -
  38031. --
  38032. CREATE VIEW ss_rna_viral_sequence AS
  38033. SELECT feature.feature_id AS ss_rna_viral_sequence_id,
  38034. feature.feature_id,
  38035. feature.dbxref_id,
  38036. feature.organism_id,
  38037. feature.name,
  38038. feature.uniquename,
  38039. feature.residues,
  38040. feature.seqlen,
  38041. feature.md5checksum,
  38042. feature.type_id,
  38043. feature.is_analysis,
  38044. feature.is_obsolete,
  38045. feature.timeaccessioned,
  38046. feature.timelastmodified
  38047. FROM (feature
  38048. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38049. WHERE (((((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text));
  38050. --
  38051. -- Name: st_turn_left_handed_type_one; Type: VIEW; Schema: so; Owner: -
  38052. --
  38053. CREATE VIEW st_turn_left_handed_type_one AS
  38054. SELECT feature.feature_id AS st_turn_left_handed_type_one_id,
  38055. feature.feature_id,
  38056. feature.dbxref_id,
  38057. feature.organism_id,
  38058. feature.name,
  38059. feature.uniquename,
  38060. feature.residues,
  38061. feature.seqlen,
  38062. feature.md5checksum,
  38063. feature.type_id,
  38064. feature.is_analysis,
  38065. feature.is_obsolete,
  38066. feature.timeaccessioned,
  38067. feature.timelastmodified
  38068. FROM (feature
  38069. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38070. WHERE ((cvterm.name)::text = 'st_turn_left_handed_type_one'::text);
  38071. --
  38072. -- Name: st_turn_left_handed_type_two; Type: VIEW; Schema: so; Owner: -
  38073. --
  38074. CREATE VIEW st_turn_left_handed_type_two AS
  38075. SELECT feature.feature_id AS st_turn_left_handed_type_two_id,
  38076. feature.feature_id,
  38077. feature.dbxref_id,
  38078. feature.organism_id,
  38079. feature.name,
  38080. feature.uniquename,
  38081. feature.residues,
  38082. feature.seqlen,
  38083. feature.md5checksum,
  38084. feature.type_id,
  38085. feature.is_analysis,
  38086. feature.is_obsolete,
  38087. feature.timeaccessioned,
  38088. feature.timelastmodified
  38089. FROM (feature
  38090. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38091. WHERE ((cvterm.name)::text = 'st_turn_left_handed_type_two'::text);
  38092. --
  38093. -- Name: st_turn_right_handed_type_one; Type: VIEW; Schema: so; Owner: -
  38094. --
  38095. CREATE VIEW st_turn_right_handed_type_one AS
  38096. SELECT feature.feature_id AS st_turn_right_handed_type_one_id,
  38097. feature.feature_id,
  38098. feature.dbxref_id,
  38099. feature.organism_id,
  38100. feature.name,
  38101. feature.uniquename,
  38102. feature.residues,
  38103. feature.seqlen,
  38104. feature.md5checksum,
  38105. feature.type_id,
  38106. feature.is_analysis,
  38107. feature.is_obsolete,
  38108. feature.timeaccessioned,
  38109. feature.timelastmodified
  38110. FROM (feature
  38111. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38112. WHERE ((cvterm.name)::text = 'st_turn_right_handed_type_one'::text);
  38113. --
  38114. -- Name: st_turn_right_handed_type_two; Type: VIEW; Schema: so; Owner: -
  38115. --
  38116. CREATE VIEW st_turn_right_handed_type_two AS
  38117. SELECT feature.feature_id AS st_turn_right_handed_type_two_id,
  38118. feature.feature_id,
  38119. feature.dbxref_id,
  38120. feature.organism_id,
  38121. feature.name,
  38122. feature.uniquename,
  38123. feature.residues,
  38124. feature.seqlen,
  38125. feature.md5checksum,
  38126. feature.type_id,
  38127. feature.is_analysis,
  38128. feature.is_obsolete,
  38129. feature.timeaccessioned,
  38130. feature.timelastmodified
  38131. FROM (feature
  38132. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38133. WHERE ((cvterm.name)::text = 'st_turn_right_handed_type_two'::text);
  38134. --
  38135. -- Name: standard_draft; Type: VIEW; Schema: so; Owner: -
  38136. --
  38137. CREATE VIEW standard_draft AS
  38138. SELECT feature.feature_id AS standard_draft_id,
  38139. feature.feature_id,
  38140. feature.dbxref_id,
  38141. feature.organism_id,
  38142. feature.name,
  38143. feature.uniquename,
  38144. feature.residues,
  38145. feature.seqlen,
  38146. feature.md5checksum,
  38147. feature.type_id,
  38148. feature.is_analysis,
  38149. feature.is_obsolete,
  38150. feature.timeaccessioned,
  38151. feature.timelastmodified
  38152. FROM (feature
  38153. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38154. WHERE ((cvterm.name)::text = 'standard_draft'::text);
  38155. --
  38156. -- Name: start_codon; Type: VIEW; Schema: so; Owner: -
  38157. --
  38158. CREATE VIEW start_codon AS
  38159. SELECT feature.feature_id AS start_codon_id,
  38160. feature.feature_id,
  38161. feature.dbxref_id,
  38162. feature.organism_id,
  38163. feature.name,
  38164. feature.uniquename,
  38165. feature.residues,
  38166. feature.seqlen,
  38167. feature.md5checksum,
  38168. feature.type_id,
  38169. feature.is_analysis,
  38170. feature.is_obsolete,
  38171. feature.timeaccessioned,
  38172. feature.timelastmodified
  38173. FROM (feature
  38174. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38175. WHERE (((((cvterm.name)::text = 'non_canonical_start_codon'::text) OR ((cvterm.name)::text = 'four_bp_start_codon'::text)) OR ((cvterm.name)::text = 'CTG_start_codon'::text)) OR ((cvterm.name)::text = 'start_codon'::text));
  38176. --
  38177. -- Name: status; Type: VIEW; Schema: so; Owner: -
  38178. --
  38179. CREATE VIEW status AS
  38180. SELECT feature.feature_id AS status_id,
  38181. feature.feature_id,
  38182. feature.dbxref_id,
  38183. feature.organism_id,
  38184. feature.name,
  38185. feature.uniquename,
  38186. feature.residues,
  38187. feature.seqlen,
  38188. feature.md5checksum,
  38189. feature.type_id,
  38190. feature.is_analysis,
  38191. feature.is_obsolete,
  38192. feature.timeaccessioned,
  38193. feature.timelastmodified
  38194. FROM (feature
  38195. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38196. WHERE ((((((((((((((((((((((((((cvterm.name)::text = 'fragmentary'::text) OR ((cvterm.name)::text = 'predicted'::text)) OR ((cvterm.name)::text = 'validated'::text)) OR ((cvterm.name)::text = 'invalidated'::text)) OR ((cvterm.name)::text = 'independently_known'::text)) OR ((cvterm.name)::text = 'consensus'::text)) OR ((cvterm.name)::text = 'low_complexity'::text)) OR ((cvterm.name)::text = 'whole_genome_sequence_status'::text)) OR ((cvterm.name)::text = 'supported_by_sequence_similarity'::text)) OR ((cvterm.name)::text = 'orphan'::text)) OR ((cvterm.name)::text = 'predicted_by_ab_initio_computation'::text)) OR ((cvterm.name)::text = 'supported_by_domain_match'::text)) OR ((cvterm.name)::text = 'supported_by_EST_or_cDNA'::text)) OR ((cvterm.name)::text = 'experimentally_determined'::text)) OR ((cvterm.name)::text = 'invalidated_by_chimeric_cDNA'::text)) OR ((cvterm.name)::text = 'invalidated_by_genomic_contamination'::text)) OR ((cvterm.name)::text = 'invalidated_by_genomic_polyA_primed_cDNA'::text)) OR ((cvterm.name)::text = 'invalidated_by_partial_processing'::text)) OR ((cvterm.name)::text = 'standard_draft'::text)) OR ((cvterm.name)::text = 'high_quality_draft'::text)) OR ((cvterm.name)::text = 'improved_high_quality_draft'::text)) OR ((cvterm.name)::text = 'annotation_directed_improved_draft'::text)) OR ((cvterm.name)::text = 'noncontiguous_finished'::text)) OR ((cvterm.name)::text = 'finished_genome'::text)) OR ((cvterm.name)::text = 'status'::text));
  38197. --
  38198. -- Name: stem_loop; Type: VIEW; Schema: so; Owner: -
  38199. --
  38200. CREATE VIEW stem_loop AS
  38201. SELECT feature.feature_id AS stem_loop_id,
  38202. feature.feature_id,
  38203. feature.dbxref_id,
  38204. feature.organism_id,
  38205. feature.name,
  38206. feature.uniquename,
  38207. feature.residues,
  38208. feature.seqlen,
  38209. feature.md5checksum,
  38210. feature.type_id,
  38211. feature.is_analysis,
  38212. feature.is_obsolete,
  38213. feature.timeaccessioned,
  38214. feature.timelastmodified
  38215. FROM (feature
  38216. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38217. WHERE (((cvterm.name)::text = 'tetraloop'::text) OR ((cvterm.name)::text = 'stem_loop'::text));
  38218. --
  38219. -- Name: sticky_end_restriction_enzyme_cleavage_site; Type: VIEW; Schema: so; Owner: -
  38220. --
  38221. CREATE VIEW sticky_end_restriction_enzyme_cleavage_site AS
  38222. SELECT feature.feature_id AS sticky_end_restriction_enzyme_cleavage_site_id,
  38223. feature.feature_id,
  38224. feature.dbxref_id,
  38225. feature.organism_id,
  38226. feature.name,
  38227. feature.uniquename,
  38228. feature.residues,
  38229. feature.seqlen,
  38230. feature.md5checksum,
  38231. feature.type_id,
  38232. feature.is_analysis,
  38233. feature.is_obsolete,
  38234. feature.timeaccessioned,
  38235. feature.timelastmodified
  38236. FROM (feature
  38237. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38238. WHERE ((cvterm.name)::text = 'sticky_end_restriction_enzyme_cleavage_site'::text);
  38239. --
  38240. -- Name: stop_codon; Type: VIEW; Schema: so; Owner: -
  38241. --
  38242. CREATE VIEW stop_codon AS
  38243. SELECT feature.feature_id AS stop_codon_id,
  38244. feature.feature_id,
  38245. feature.dbxref_id,
  38246. feature.organism_id,
  38247. feature.name,
  38248. feature.uniquename,
  38249. feature.residues,
  38250. feature.seqlen,
  38251. feature.md5checksum,
  38252. feature.type_id,
  38253. feature.is_analysis,
  38254. feature.is_obsolete,
  38255. feature.timeaccessioned,
  38256. feature.timelastmodified
  38257. FROM (feature
  38258. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38259. WHERE ((cvterm.name)::text = 'stop_codon'::text);
  38260. --
  38261. -- Name: stop_codon_read_through; Type: VIEW; Schema: so; Owner: -
  38262. --
  38263. CREATE VIEW stop_codon_read_through AS
  38264. SELECT feature.feature_id AS stop_codon_read_through_id,
  38265. feature.feature_id,
  38266. feature.dbxref_id,
  38267. feature.organism_id,
  38268. feature.name,
  38269. feature.uniquename,
  38270. feature.residues,
  38271. feature.seqlen,
  38272. feature.md5checksum,
  38273. feature.type_id,
  38274. feature.is_analysis,
  38275. feature.is_obsolete,
  38276. feature.timeaccessioned,
  38277. feature.timelastmodified
  38278. FROM (feature
  38279. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38280. WHERE ((((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text) OR ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'stop_codon_read_through'::text));
  38281. --
  38282. -- Name: stop_codon_redefined_as_pyrrolysine; Type: VIEW; Schema: so; Owner: -
  38283. --
  38284. CREATE VIEW stop_codon_redefined_as_pyrrolysine AS
  38285. SELECT feature.feature_id AS stop_codon_redefined_as_pyrrolysine_id,
  38286. feature.feature_id,
  38287. feature.dbxref_id,
  38288. feature.organism_id,
  38289. feature.name,
  38290. feature.uniquename,
  38291. feature.residues,
  38292. feature.seqlen,
  38293. feature.md5checksum,
  38294. feature.type_id,
  38295. feature.is_analysis,
  38296. feature.is_obsolete,
  38297. feature.timeaccessioned,
  38298. feature.timelastmodified
  38299. FROM (feature
  38300. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38301. WHERE ((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text);
  38302. --
  38303. -- Name: stop_codon_redefined_as_selenocysteine; Type: VIEW; Schema: so; Owner: -
  38304. --
  38305. CREATE VIEW stop_codon_redefined_as_selenocysteine AS
  38306. SELECT feature.feature_id AS stop_codon_redefined_as_selenocysteine_id,
  38307. feature.feature_id,
  38308. feature.dbxref_id,
  38309. feature.organism_id,
  38310. feature.name,
  38311. feature.uniquename,
  38312. feature.residues,
  38313. feature.seqlen,
  38314. feature.md5checksum,
  38315. feature.type_id,
  38316. feature.is_analysis,
  38317. feature.is_obsolete,
  38318. feature.timeaccessioned,
  38319. feature.timelastmodified
  38320. FROM (feature
  38321. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38322. WHERE ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text);
  38323. --
  38324. -- Name: stop_codon_signal; Type: VIEW; Schema: so; Owner: -
  38325. --
  38326. CREATE VIEW stop_codon_signal AS
  38327. SELECT feature.feature_id AS stop_codon_signal_id,
  38328. feature.feature_id,
  38329. feature.dbxref_id,
  38330. feature.organism_id,
  38331. feature.name,
  38332. feature.uniquename,
  38333. feature.residues,
  38334. feature.seqlen,
  38335. feature.md5checksum,
  38336. feature.type_id,
  38337. feature.is_analysis,
  38338. feature.is_obsolete,
  38339. feature.timeaccessioned,
  38340. feature.timelastmodified
  38341. FROM (feature
  38342. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38343. WHERE (((((cvterm.name)::text = 'UAG_stop_codon_signal'::text) OR ((cvterm.name)::text = 'UAA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UGA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'stop_codon_signal'::text));
  38344. --
  38345. -- Name: stop_gained; Type: VIEW; Schema: so; Owner: -
  38346. --
  38347. CREATE VIEW stop_gained AS
  38348. SELECT feature.feature_id AS stop_gained_id,
  38349. feature.feature_id,
  38350. feature.dbxref_id,
  38351. feature.organism_id,
  38352. feature.name,
  38353. feature.uniquename,
  38354. feature.residues,
  38355. feature.seqlen,
  38356. feature.md5checksum,
  38357. feature.type_id,
  38358. feature.is_analysis,
  38359. feature.is_obsolete,
  38360. feature.timeaccessioned,
  38361. feature.timelastmodified
  38362. FROM (feature
  38363. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38364. WHERE ((cvterm.name)::text = 'stop_gained'::text);
  38365. --
  38366. -- Name: stop_lost; Type: VIEW; Schema: so; Owner: -
  38367. --
  38368. CREATE VIEW stop_lost AS
  38369. SELECT feature.feature_id AS stop_lost_id,
  38370. feature.feature_id,
  38371. feature.dbxref_id,
  38372. feature.organism_id,
  38373. feature.name,
  38374. feature.uniquename,
  38375. feature.residues,
  38376. feature.seqlen,
  38377. feature.md5checksum,
  38378. feature.type_id,
  38379. feature.is_analysis,
  38380. feature.is_obsolete,
  38381. feature.timeaccessioned,
  38382. feature.timelastmodified
  38383. FROM (feature
  38384. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38385. WHERE ((cvterm.name)::text = 'stop_lost'::text);
  38386. --
  38387. -- Name: stop_retained_variant; Type: VIEW; Schema: so; Owner: -
  38388. --
  38389. CREATE VIEW stop_retained_variant AS
  38390. SELECT feature.feature_id AS stop_retained_variant_id,
  38391. feature.feature_id,
  38392. feature.dbxref_id,
  38393. feature.organism_id,
  38394. feature.name,
  38395. feature.uniquename,
  38396. feature.residues,
  38397. feature.seqlen,
  38398. feature.md5checksum,
  38399. feature.type_id,
  38400. feature.is_analysis,
  38401. feature.is_obsolete,
  38402. feature.timeaccessioned,
  38403. feature.timelastmodified
  38404. FROM (feature
  38405. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38406. WHERE ((cvterm.name)::text = 'stop_retained_variant'::text);
  38407. --
  38408. -- Name: strand_attribute; Type: VIEW; Schema: so; Owner: -
  38409. --
  38410. CREATE VIEW strand_attribute AS
  38411. SELECT feature.feature_id AS strand_attribute_id,
  38412. feature.feature_id,
  38413. feature.dbxref_id,
  38414. feature.organism_id,
  38415. feature.name,
  38416. feature.uniquename,
  38417. feature.residues,
  38418. feature.seqlen,
  38419. feature.md5checksum,
  38420. feature.type_id,
  38421. feature.is_analysis,
  38422. feature.is_obsolete,
  38423. feature.timeaccessioned,
  38424. feature.timelastmodified
  38425. FROM (feature
  38426. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38427. WHERE ((((cvterm.name)::text = 'single'::text) OR ((cvterm.name)::text = 'double'::text)) OR ((cvterm.name)::text = 'strand_attribute'::text));
  38428. --
  38429. -- Name: strna; Type: VIEW; Schema: so; Owner: -
  38430. --
  38431. CREATE VIEW strna AS
  38432. SELECT feature.feature_id AS strna_id,
  38433. feature.feature_id,
  38434. feature.dbxref_id,
  38435. feature.organism_id,
  38436. feature.name,
  38437. feature.uniquename,
  38438. feature.residues,
  38439. feature.seqlen,
  38440. feature.md5checksum,
  38441. feature.type_id,
  38442. feature.is_analysis,
  38443. feature.is_obsolete,
  38444. feature.timeaccessioned,
  38445. feature.timelastmodified
  38446. FROM (feature
  38447. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38448. WHERE ((cvterm.name)::text = 'stRNA'::text);
  38449. --
  38450. -- Name: strna_encoding; Type: VIEW; Schema: so; Owner: -
  38451. --
  38452. CREATE VIEW strna_encoding AS
  38453. SELECT feature.feature_id AS strna_encoding_id,
  38454. feature.feature_id,
  38455. feature.dbxref_id,
  38456. feature.organism_id,
  38457. feature.name,
  38458. feature.uniquename,
  38459. feature.residues,
  38460. feature.seqlen,
  38461. feature.md5checksum,
  38462. feature.type_id,
  38463. feature.is_analysis,
  38464. feature.is_obsolete,
  38465. feature.timeaccessioned,
  38466. feature.timelastmodified
  38467. FROM (feature
  38468. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38469. WHERE ((cvterm.name)::text = 'stRNA_encoding'::text);
  38470. --
  38471. -- Name: strna_gene; Type: VIEW; Schema: so; Owner: -
  38472. --
  38473. CREATE VIEW strna_gene AS
  38474. SELECT feature.feature_id AS strna_gene_id,
  38475. feature.feature_id,
  38476. feature.dbxref_id,
  38477. feature.organism_id,
  38478. feature.name,
  38479. feature.uniquename,
  38480. feature.residues,
  38481. feature.seqlen,
  38482. feature.md5checksum,
  38483. feature.type_id,
  38484. feature.is_analysis,
  38485. feature.is_obsolete,
  38486. feature.timeaccessioned,
  38487. feature.timelastmodified
  38488. FROM (feature
  38489. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38490. WHERE ((cvterm.name)::text = 'stRNA_gene'::text);
  38491. --
  38492. -- Name: strna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  38493. --
  38494. CREATE VIEW strna_primary_transcript AS
  38495. SELECT feature.feature_id AS strna_primary_transcript_id,
  38496. feature.feature_id,
  38497. feature.dbxref_id,
  38498. feature.organism_id,
  38499. feature.name,
  38500. feature.uniquename,
  38501. feature.residues,
  38502. feature.seqlen,
  38503. feature.md5checksum,
  38504. feature.type_id,
  38505. feature.is_analysis,
  38506. feature.is_obsolete,
  38507. feature.timeaccessioned,
  38508. feature.timelastmodified
  38509. FROM (feature
  38510. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38511. WHERE ((cvterm.name)::text = 'stRNA_primary_transcript'::text);
  38512. --
  38513. -- Name: structural_alteration; Type: VIEW; Schema: so; Owner: -
  38514. --
  38515. CREATE VIEW structural_alteration AS
  38516. SELECT feature.feature_id AS structural_alteration_id,
  38517. feature.feature_id,
  38518. feature.dbxref_id,
  38519. feature.organism_id,
  38520. feature.name,
  38521. feature.uniquename,
  38522. feature.residues,
  38523. feature.seqlen,
  38524. feature.md5checksum,
  38525. feature.type_id,
  38526. feature.is_analysis,
  38527. feature.is_obsolete,
  38528. feature.timeaccessioned,
  38529. feature.timelastmodified
  38530. FROM (feature
  38531. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38532. WHERE (((cvterm.name)::text = 'complex_structural_alteration'::text) OR ((cvterm.name)::text = 'structural_alteration'::text));
  38533. --
  38534. -- Name: structural_variant; Type: VIEW; Schema: so; Owner: -
  38535. --
  38536. CREATE VIEW structural_variant AS
  38537. SELECT feature.feature_id AS structural_variant_id,
  38538. feature.feature_id,
  38539. feature.dbxref_id,
  38540. feature.organism_id,
  38541. feature.name,
  38542. feature.uniquename,
  38543. feature.residues,
  38544. feature.seqlen,
  38545. feature.md5checksum,
  38546. feature.type_id,
  38547. feature.is_analysis,
  38548. feature.is_obsolete,
  38549. feature.timeaccessioned,
  38550. feature.timelastmodified
  38551. FROM (feature
  38552. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38553. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'silent_mutation'::text) OR ((cvterm.name)::text = 'copy_number_change'::text)) OR ((cvterm.name)::text = 'gene_variant'::text)) OR ((cvterm.name)::text = 'regulatory_region_variant'::text)) OR ((cvterm.name)::text = 'intergenic_variant'::text)) OR ((cvterm.name)::text = 'upstream_gene_variant'::text)) OR ((cvterm.name)::text = 'downstream_gene_variant'::text)) OR ((cvterm.name)::text = 'gene_fusion'::text)) OR ((cvterm.name)::text = 'splicing_variant'::text)) OR ((cvterm.name)::text = 'transcript_variant'::text)) OR ((cvterm.name)::text = 'translational_product_structure_variant'::text)) OR ((cvterm.name)::text = 'cryptic_splice_site_variant'::text)) OR ((cvterm.name)::text = 'exon_loss'::text)) OR ((cvterm.name)::text = 'intron_gain'::text)) OR ((cvterm.name)::text = 'splice_region_variant'::text)) OR ((cvterm.name)::text = 'cryptic_splice_acceptor'::text)) OR ((cvterm.name)::text = 'cryptic_splice_donor'::text)) OR ((cvterm.name)::text = 'complex_change_in_transcript'::text)) OR ((cvterm.name)::text = 'transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'nc_transcript_variant'::text)) OR ((cvterm.name)::text = 'NMD_transcript_variant'::text)) OR ((cvterm.name)::text = 'UTR_variant'::text)) OR ((cvterm.name)::text = 'intron_variant'::text)) OR ((cvterm.name)::text = 'exon_variant'::text)) OR ((cvterm.name)::text = 'compensatory_transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'mature_miRNA_variant'::text)) OR ((cvterm.name)::text = '5_prime_UTR_variant'::text)) OR ((cvterm.name)::text = '3_prime_UTR_variant'::text)) OR ((cvterm.name)::text = 'splice_site_variant'::text)) OR ((cvterm.name)::text = 'splice_acceptor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_5th_base_variant'::text)) OR ((cvterm.name)::text = 'coding_sequence_variant'::text)) OR ((cvterm.name)::text = 'non_coding_exon_variant'::text)) OR ((cvterm.name)::text = 'codon_variant'::text)) OR ((cvterm.name)::text = 'frameshift_variant'::text)) OR ((cvterm.name)::text = 'inframe_variant'::text)) OR ((cvterm.name)::text = 'initiator_codon_change'::text)) OR ((cvterm.name)::text = 'non_synonymous_codon'::text)) OR ((cvterm.name)::text = 'synonymous_codon'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_gained'::text)) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text)) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'frame_restoring_variant'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_2_frameshift variant'::text)) OR ((cvterm.name)::text = 'inframe_codon_gain'::text)) OR ((cvterm.name)::text = 'inframe_codon_loss'::text)) OR ((cvterm.name)::text = '3D_polypeptide_structure_variant'::text)) OR ((cvterm.name)::text = 'complex_change_of_translational_product_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_sequence_variant'::text)) OR ((cvterm.name)::text = 'complex_3D_structural_variant'::text)) OR ((cvterm.name)::text = 'conformational_change_variant'::text)) OR ((cvterm.name)::text = 'amino_acid_deletion'::text)) OR ((cvterm.name)::text = 'amino_acid_insertion'::text)) OR ((cvterm.name)::text = 'amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide'::text)) OR ((cvterm.name)::text = 'polypeptide_fusion'::text)) OR ((cvterm.name)::text = 'polypeptide_truncation'::text)) OR ((cvterm.name)::text = 'conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'non_conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'TF_binding_site_variant'::text)) OR ((cvterm.name)::text = '5KB_upstream_variant'::text)) OR ((cvterm.name)::text = '2KB_upstream_variant'::text)) OR ((cvterm.name)::text = '5KB_downstream_variant'::text)) OR ((cvterm.name)::text = '500B_downstream_variant'::text)) OR ((cvterm.name)::text = 'structural_variant'::text));
  38554. --
  38555. -- Name: sts; Type: VIEW; Schema: so; Owner: -
  38556. --
  38557. CREATE VIEW sts AS
  38558. SELECT feature.feature_id AS sts_id,
  38559. feature.feature_id,
  38560. feature.dbxref_id,
  38561. feature.organism_id,
  38562. feature.name,
  38563. feature.uniquename,
  38564. feature.residues,
  38565. feature.seqlen,
  38566. feature.md5checksum,
  38567. feature.type_id,
  38568. feature.is_analysis,
  38569. feature.is_obsolete,
  38570. feature.timeaccessioned,
  38571. feature.timelastmodified
  38572. FROM (feature
  38573. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38574. WHERE ((cvterm.name)::text = 'STS'::text);
  38575. --
  38576. -- Name: sts_map; Type: VIEW; Schema: so; Owner: -
  38577. --
  38578. CREATE VIEW sts_map AS
  38579. SELECT feature.feature_id AS sts_map_id,
  38580. feature.feature_id,
  38581. feature.dbxref_id,
  38582. feature.organism_id,
  38583. feature.name,
  38584. feature.uniquename,
  38585. feature.residues,
  38586. feature.seqlen,
  38587. feature.md5checksum,
  38588. feature.type_id,
  38589. feature.is_analysis,
  38590. feature.is_obsolete,
  38591. feature.timeaccessioned,
  38592. feature.timelastmodified
  38593. FROM (feature
  38594. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38595. WHERE ((cvterm.name)::text = 'STS_map'::text);
  38596. --
  38597. -- Name: substitution; Type: VIEW; Schema: so; Owner: -
  38598. --
  38599. CREATE VIEW substitution AS
  38600. SELECT feature.feature_id AS substitution_id,
  38601. feature.feature_id,
  38602. feature.dbxref_id,
  38603. feature.organism_id,
  38604. feature.name,
  38605. feature.uniquename,
  38606. feature.residues,
  38607. feature.seqlen,
  38608. feature.md5checksum,
  38609. feature.type_id,
  38610. feature.is_analysis,
  38611. feature.is_obsolete,
  38612. feature.timeaccessioned,
  38613. feature.timelastmodified
  38614. FROM (feature
  38615. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38616. WHERE ((((((((((((((((((((((((((((cvterm.name)::text = 'sequence_length_variation'::text) OR ((cvterm.name)::text = 'MNP'::text)) OR ((cvterm.name)::text = 'SNV'::text)) OR ((cvterm.name)::text = 'complex_substitution'::text)) OR ((cvterm.name)::text = 'simple_sequence_length_variation'::text)) OR ((cvterm.name)::text = 'SNP'::text)) OR ((cvterm.name)::text = 'point_mutation'::text)) OR ((cvterm.name)::text = 'transition'::text)) OR ((cvterm.name)::text = 'transversion'::text)) OR ((cvterm.name)::text = 'pyrimidine_transition'::text)) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text)) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'substitution'::text));
  38617. --
  38618. -- Name: sugar_edge_base_pair; Type: VIEW; Schema: so; Owner: -
  38619. --
  38620. CREATE VIEW sugar_edge_base_pair AS
  38621. SELECT feature.feature_id AS sugar_edge_base_pair_id,
  38622. feature.feature_id,
  38623. feature.dbxref_id,
  38624. feature.organism_id,
  38625. feature.name,
  38626. feature.uniquename,
  38627. feature.residues,
  38628. feature.seqlen,
  38629. feature.md5checksum,
  38630. feature.type_id,
  38631. feature.is_analysis,
  38632. feature.is_obsolete,
  38633. feature.timeaccessioned,
  38634. feature.timelastmodified
  38635. FROM (feature
  38636. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38637. WHERE ((cvterm.name)::text = 'sugar_edge_base_pair'::text);
  38638. --
  38639. -- Name: supercontig; Type: VIEW; Schema: so; Owner: -
  38640. --
  38641. CREATE VIEW supercontig AS
  38642. SELECT feature.feature_id AS supercontig_id,
  38643. feature.feature_id,
  38644. feature.dbxref_id,
  38645. feature.organism_id,
  38646. feature.name,
  38647. feature.uniquename,
  38648. feature.residues,
  38649. feature.seqlen,
  38650. feature.md5checksum,
  38651. feature.type_id,
  38652. feature.is_analysis,
  38653. feature.is_obsolete,
  38654. feature.timeaccessioned,
  38655. feature.timelastmodified
  38656. FROM (feature
  38657. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38658. WHERE ((cvterm.name)::text = 'supercontig'::text);
  38659. --
  38660. -- Name: supported_by_domain_match; Type: VIEW; Schema: so; Owner: -
  38661. --
  38662. CREATE VIEW supported_by_domain_match AS
  38663. SELECT feature.feature_id AS supported_by_domain_match_id,
  38664. feature.feature_id,
  38665. feature.dbxref_id,
  38666. feature.organism_id,
  38667. feature.name,
  38668. feature.uniquename,
  38669. feature.residues,
  38670. feature.seqlen,
  38671. feature.md5checksum,
  38672. feature.type_id,
  38673. feature.is_analysis,
  38674. feature.is_obsolete,
  38675. feature.timeaccessioned,
  38676. feature.timelastmodified
  38677. FROM (feature
  38678. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38679. WHERE ((cvterm.name)::text = 'supported_by_domain_match'::text);
  38680. --
  38681. -- Name: supported_by_est_or_cdna; Type: VIEW; Schema: so; Owner: -
  38682. --
  38683. CREATE VIEW supported_by_est_or_cdna AS
  38684. SELECT feature.feature_id AS supported_by_est_or_cdna_id,
  38685. feature.feature_id,
  38686. feature.dbxref_id,
  38687. feature.organism_id,
  38688. feature.name,
  38689. feature.uniquename,
  38690. feature.residues,
  38691. feature.seqlen,
  38692. feature.md5checksum,
  38693. feature.type_id,
  38694. feature.is_analysis,
  38695. feature.is_obsolete,
  38696. feature.timeaccessioned,
  38697. feature.timelastmodified
  38698. FROM (feature
  38699. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38700. WHERE ((cvterm.name)::text = 'supported_by_EST_or_cDNA'::text);
  38701. --
  38702. -- Name: supported_by_sequence_similarity; Type: VIEW; Schema: so; Owner: -
  38703. --
  38704. CREATE VIEW supported_by_sequence_similarity AS
  38705. SELECT feature.feature_id AS supported_by_sequence_similarity_id,
  38706. feature.feature_id,
  38707. feature.dbxref_id,
  38708. feature.organism_id,
  38709. feature.name,
  38710. feature.uniquename,
  38711. feature.residues,
  38712. feature.seqlen,
  38713. feature.md5checksum,
  38714. feature.type_id,
  38715. feature.is_analysis,
  38716. feature.is_obsolete,
  38717. feature.timeaccessioned,
  38718. feature.timelastmodified
  38719. FROM (feature
  38720. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38721. WHERE ((((cvterm.name)::text = 'supported_by_domain_match'::text) OR ((cvterm.name)::text = 'supported_by_EST_or_cDNA'::text)) OR ((cvterm.name)::text = 'supported_by_sequence_similarity'::text));
  38722. --
  38723. -- Name: symbiosis_island; Type: VIEW; Schema: so; Owner: -
  38724. --
  38725. CREATE VIEW symbiosis_island AS
  38726. SELECT feature.feature_id AS symbiosis_island_id,
  38727. feature.feature_id,
  38728. feature.dbxref_id,
  38729. feature.organism_id,
  38730. feature.name,
  38731. feature.uniquename,
  38732. feature.residues,
  38733. feature.seqlen,
  38734. feature.md5checksum,
  38735. feature.type_id,
  38736. feature.is_analysis,
  38737. feature.is_obsolete,
  38738. feature.timeaccessioned,
  38739. feature.timelastmodified
  38740. FROM (feature
  38741. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38742. WHERE ((cvterm.name)::text = 'symbiosis_island'::text);
  38743. --
  38744. -- Name: symmetric_rna_internal_loop; Type: VIEW; Schema: so; Owner: -
  38745. --
  38746. CREATE VIEW symmetric_rna_internal_loop AS
  38747. SELECT feature.feature_id AS symmetric_rna_internal_loop_id,
  38748. feature.feature_id,
  38749. feature.dbxref_id,
  38750. feature.organism_id,
  38751. feature.name,
  38752. feature.uniquename,
  38753. feature.residues,
  38754. feature.seqlen,
  38755. feature.md5checksum,
  38756. feature.type_id,
  38757. feature.is_analysis,
  38758. feature.is_obsolete,
  38759. feature.timeaccessioned,
  38760. feature.timelastmodified
  38761. FROM (feature
  38762. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38763. WHERE ((cvterm.name)::text = 'symmetric_RNA_internal_loop'::text);
  38764. --
  38765. -- Name: synonymous_codon; Type: VIEW; Schema: so; Owner: -
  38766. --
  38767. CREATE VIEW synonymous_codon AS
  38768. SELECT feature.feature_id AS synonymous_codon_id,
  38769. feature.feature_id,
  38770. feature.dbxref_id,
  38771. feature.organism_id,
  38772. feature.name,
  38773. feature.uniquename,
  38774. feature.residues,
  38775. feature.seqlen,
  38776. feature.md5checksum,
  38777. feature.type_id,
  38778. feature.is_analysis,
  38779. feature.is_obsolete,
  38780. feature.timeaccessioned,
  38781. feature.timelastmodified
  38782. FROM (feature
  38783. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38784. WHERE ((cvterm.name)::text = 'synonymous_codon'::text);
  38785. --
  38786. -- Name: syntenic; Type: VIEW; Schema: so; Owner: -
  38787. --
  38788. CREATE VIEW syntenic AS
  38789. SELECT feature.feature_id AS syntenic_id,
  38790. feature.feature_id,
  38791. feature.dbxref_id,
  38792. feature.organism_id,
  38793. feature.name,
  38794. feature.uniquename,
  38795. feature.residues,
  38796. feature.seqlen,
  38797. feature.md5checksum,
  38798. feature.type_id,
  38799. feature.is_analysis,
  38800. feature.is_obsolete,
  38801. feature.timeaccessioned,
  38802. feature.timelastmodified
  38803. FROM (feature
  38804. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38805. WHERE ((cvterm.name)::text = 'syntenic'::text);
  38806. --
  38807. -- Name: syntenic_region; Type: VIEW; Schema: so; Owner: -
  38808. --
  38809. CREATE VIEW syntenic_region AS
  38810. SELECT feature.feature_id AS syntenic_region_id,
  38811. feature.feature_id,
  38812. feature.dbxref_id,
  38813. feature.organism_id,
  38814. feature.name,
  38815. feature.uniquename,
  38816. feature.residues,
  38817. feature.seqlen,
  38818. feature.md5checksum,
  38819. feature.type_id,
  38820. feature.is_analysis,
  38821. feature.is_obsolete,
  38822. feature.timeaccessioned,
  38823. feature.timelastmodified
  38824. FROM (feature
  38825. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38826. WHERE ((cvterm.name)::text = 'syntenic_region'::text);
  38827. --
  38828. -- Name: synthetic_oligo; Type: VIEW; Schema: so; Owner: -
  38829. --
  38830. CREATE VIEW synthetic_oligo AS
  38831. SELECT feature.feature_id AS synthetic_oligo_id,
  38832. feature.feature_id,
  38833. feature.dbxref_id,
  38834. feature.organism_id,
  38835. feature.name,
  38836. feature.uniquename,
  38837. feature.residues,
  38838. feature.seqlen,
  38839. feature.md5checksum,
  38840. feature.type_id,
  38841. feature.is_analysis,
  38842. feature.is_obsolete,
  38843. feature.timeaccessioned,
  38844. feature.timelastmodified
  38845. FROM (feature
  38846. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38847. WHERE (((((((((cvterm.name)::text = 'morpholino_oligo'::text) OR ((cvterm.name)::text = 'PNA_oligo'::text)) OR ((cvterm.name)::text = 'LNA_oligo'::text)) OR ((cvterm.name)::text = 'TNA_oligo'::text)) OR ((cvterm.name)::text = 'GNA_oligo'::text)) OR ((cvterm.name)::text = 'R_GNA_oligo'::text)) OR ((cvterm.name)::text = 'S_GNA_oligo'::text)) OR ((cvterm.name)::text = 'synthetic_oligo'::text));
  38848. --
  38849. -- Name: synthetic_sequence; Type: VIEW; Schema: so; Owner: -
  38850. --
  38851. CREATE VIEW synthetic_sequence AS
  38852. SELECT feature.feature_id AS synthetic_sequence_id,
  38853. feature.feature_id,
  38854. feature.dbxref_id,
  38855. feature.organism_id,
  38856. feature.name,
  38857. feature.uniquename,
  38858. feature.residues,
  38859. feature.seqlen,
  38860. feature.md5checksum,
  38861. feature.type_id,
  38862. feature.is_analysis,
  38863. feature.is_obsolete,
  38864. feature.timeaccessioned,
  38865. feature.timelastmodified
  38866. FROM (feature
  38867. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38868. WHERE ((((cvterm.name)::text = 'random_sequence'::text) OR ((cvterm.name)::text = 'designed_sequence'::text)) OR ((cvterm.name)::text = 'synthetic_sequence'::text));
  38869. --
  38870. -- Name: t3_rna_polymerase_promoter; Type: VIEW; Schema: so; Owner: -
  38871. --
  38872. CREATE VIEW t3_rna_polymerase_promoter AS
  38873. SELECT feature.feature_id AS t3_rna_polymerase_promoter_id,
  38874. feature.feature_id,
  38875. feature.dbxref_id,
  38876. feature.organism_id,
  38877. feature.name,
  38878. feature.uniquename,
  38879. feature.residues,
  38880. feature.seqlen,
  38881. feature.md5checksum,
  38882. feature.type_id,
  38883. feature.is_analysis,
  38884. feature.is_obsolete,
  38885. feature.timeaccessioned,
  38886. feature.timelastmodified
  38887. FROM (feature
  38888. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38889. WHERE ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text);
  38890. --
  38891. -- Name: t7_rna_polymerase_promoter; Type: VIEW; Schema: so; Owner: -
  38892. --
  38893. CREATE VIEW t7_rna_polymerase_promoter AS
  38894. SELECT feature.feature_id AS t7_rna_polymerase_promoter_id,
  38895. feature.feature_id,
  38896. feature.dbxref_id,
  38897. feature.organism_id,
  38898. feature.name,
  38899. feature.uniquename,
  38900. feature.residues,
  38901. feature.seqlen,
  38902. feature.md5checksum,
  38903. feature.type_id,
  38904. feature.is_analysis,
  38905. feature.is_obsolete,
  38906. feature.timeaccessioned,
  38907. feature.timelastmodified
  38908. FROM (feature
  38909. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38910. WHERE ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text);
  38911. --
  38912. -- Name: t_loop; Type: VIEW; Schema: so; Owner: -
  38913. --
  38914. CREATE VIEW t_loop AS
  38915. SELECT feature.feature_id AS t_loop_id,
  38916. feature.feature_id,
  38917. feature.dbxref_id,
  38918. feature.organism_id,
  38919. feature.name,
  38920. feature.uniquename,
  38921. feature.residues,
  38922. feature.seqlen,
  38923. feature.md5checksum,
  38924. feature.type_id,
  38925. feature.is_analysis,
  38926. feature.is_obsolete,
  38927. feature.timeaccessioned,
  38928. feature.timelastmodified
  38929. FROM (feature
  38930. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38931. WHERE ((cvterm.name)::text = 'T_loop'::text);
  38932. --
  38933. -- Name: t_to_a_transversion; Type: VIEW; Schema: so; Owner: -
  38934. --
  38935. CREATE VIEW t_to_a_transversion AS
  38936. SELECT feature.feature_id AS t_to_a_transversion_id,
  38937. feature.feature_id,
  38938. feature.dbxref_id,
  38939. feature.organism_id,
  38940. feature.name,
  38941. feature.uniquename,
  38942. feature.residues,
  38943. feature.seqlen,
  38944. feature.md5checksum,
  38945. feature.type_id,
  38946. feature.is_analysis,
  38947. feature.is_obsolete,
  38948. feature.timeaccessioned,
  38949. feature.timelastmodified
  38950. FROM (feature
  38951. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38952. WHERE ((cvterm.name)::text = 'T_to_A_transversion'::text);
  38953. --
  38954. -- Name: t_to_c_transition; Type: VIEW; Schema: so; Owner: -
  38955. --
  38956. CREATE VIEW t_to_c_transition AS
  38957. SELECT feature.feature_id AS t_to_c_transition_id,
  38958. feature.feature_id,
  38959. feature.dbxref_id,
  38960. feature.organism_id,
  38961. feature.name,
  38962. feature.uniquename,
  38963. feature.residues,
  38964. feature.seqlen,
  38965. feature.md5checksum,
  38966. feature.type_id,
  38967. feature.is_analysis,
  38968. feature.is_obsolete,
  38969. feature.timeaccessioned,
  38970. feature.timelastmodified
  38971. FROM (feature
  38972. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38973. WHERE ((cvterm.name)::text = 'T_to_C_transition'::text);
  38974. --
  38975. -- Name: t_to_g_transversion; Type: VIEW; Schema: so; Owner: -
  38976. --
  38977. CREATE VIEW t_to_g_transversion AS
  38978. SELECT feature.feature_id AS t_to_g_transversion_id,
  38979. feature.feature_id,
  38980. feature.dbxref_id,
  38981. feature.organism_id,
  38982. feature.name,
  38983. feature.uniquename,
  38984. feature.residues,
  38985. feature.seqlen,
  38986. feature.md5checksum,
  38987. feature.type_id,
  38988. feature.is_analysis,
  38989. feature.is_obsolete,
  38990. feature.timeaccessioned,
  38991. feature.timelastmodified
  38992. FROM (feature
  38993. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  38994. WHERE ((cvterm.name)::text = 'T_to_G_transversion'::text);
  38995. --
  38996. -- Name: tag; Type: VIEW; Schema: so; Owner: -
  38997. --
  38998. CREATE VIEW tag AS
  38999. SELECT feature.feature_id AS tag_id,
  39000. feature.feature_id,
  39001. feature.dbxref_id,
  39002. feature.organism_id,
  39003. feature.name,
  39004. feature.uniquename,
  39005. feature.residues,
  39006. feature.seqlen,
  39007. feature.md5checksum,
  39008. feature.type_id,
  39009. feature.is_analysis,
  39010. feature.is_obsolete,
  39011. feature.timeaccessioned,
  39012. feature.timelastmodified
  39013. FROM (feature
  39014. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39015. WHERE ((((((((((((((cvterm.name)::text = 'SAGE_tag'::text) OR ((cvterm.name)::text = 'STS'::text)) OR ((cvterm.name)::text = 'EST'::text)) OR ((cvterm.name)::text = 'engineered_tag'::text)) OR ((cvterm.name)::text = 'five_prime_EST'::text)) OR ((cvterm.name)::text = 'three_prime_EST'::text)) OR ((cvterm.name)::text = 'UST'::text)) OR ((cvterm.name)::text = 'RST'::text)) OR ((cvterm.name)::text = 'three_prime_UST'::text)) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'three_prime_RST'::text)) OR ((cvterm.name)::text = 'five_prime_RST'::text)) OR ((cvterm.name)::text = 'tag'::text));
  39016. --
  39017. -- Name: tandem; Type: VIEW; Schema: so; Owner: -
  39018. --
  39019. CREATE VIEW tandem AS
  39020. SELECT feature.feature_id AS tandem_id,
  39021. feature.feature_id,
  39022. feature.dbxref_id,
  39023. feature.organism_id,
  39024. feature.name,
  39025. feature.uniquename,
  39026. feature.residues,
  39027. feature.seqlen,
  39028. feature.md5checksum,
  39029. feature.type_id,
  39030. feature.is_analysis,
  39031. feature.is_obsolete,
  39032. feature.timeaccessioned,
  39033. feature.timelastmodified
  39034. FROM (feature
  39035. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39036. WHERE ((cvterm.name)::text = 'tandem'::text);
  39037. --
  39038. -- Name: tandem_duplication; Type: VIEW; Schema: so; Owner: -
  39039. --
  39040. CREATE VIEW tandem_duplication AS
  39041. SELECT feature.feature_id AS tandem_duplication_id,
  39042. feature.feature_id,
  39043. feature.dbxref_id,
  39044. feature.organism_id,
  39045. feature.name,
  39046. feature.uniquename,
  39047. feature.residues,
  39048. feature.seqlen,
  39049. feature.md5checksum,
  39050. feature.type_id,
  39051. feature.is_analysis,
  39052. feature.is_obsolete,
  39053. feature.timeaccessioned,
  39054. feature.timelastmodified
  39055. FROM (feature
  39056. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39057. WHERE ((((cvterm.name)::text = 'direct_tandem_duplication'::text) OR ((cvterm.name)::text = 'inverted_tandem_duplication'::text)) OR ((cvterm.name)::text = 'tandem_duplication'::text));
  39058. --
  39059. -- Name: tandem_repeat; Type: VIEW; Schema: so; Owner: -
  39060. --
  39061. CREATE VIEW tandem_repeat AS
  39062. SELECT feature.feature_id AS tandem_repeat_id,
  39063. feature.feature_id,
  39064. feature.dbxref_id,
  39065. feature.organism_id,
  39066. feature.name,
  39067. feature.uniquename,
  39068. feature.residues,
  39069. feature.seqlen,
  39070. feature.md5checksum,
  39071. feature.type_id,
  39072. feature.is_analysis,
  39073. feature.is_obsolete,
  39074. feature.timeaccessioned,
  39075. feature.timelastmodified
  39076. FROM (feature
  39077. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39078. WHERE ((((((((cvterm.name)::text = 'satellite_DNA'::text) OR ((cvterm.name)::text = 'microsatellite'::text)) OR ((cvterm.name)::text = 'minisatellite'::text)) OR ((cvterm.name)::text = 'dinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'trinucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'tetranucleotide_repeat_microsatellite_feature'::text)) OR ((cvterm.name)::text = 'tandem_repeat'::text));
  39079. --
  39080. -- Name: target_site_duplication; Type: VIEW; Schema: so; Owner: -
  39081. --
  39082. CREATE VIEW target_site_duplication AS
  39083. SELECT feature.feature_id AS target_site_duplication_id,
  39084. feature.feature_id,
  39085. feature.dbxref_id,
  39086. feature.organism_id,
  39087. feature.name,
  39088. feature.uniquename,
  39089. feature.residues,
  39090. feature.seqlen,
  39091. feature.md5checksum,
  39092. feature.type_id,
  39093. feature.is_analysis,
  39094. feature.is_obsolete,
  39095. feature.timeaccessioned,
  39096. feature.timelastmodified
  39097. FROM (feature
  39098. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39099. WHERE ((cvterm.name)::text = 'target_site_duplication'::text);
  39100. --
  39101. -- Name: targeting_vector; Type: VIEW; Schema: so; Owner: -
  39102. --
  39103. CREATE VIEW targeting_vector AS
  39104. SELECT feature.feature_id AS targeting_vector_id,
  39105. feature.feature_id,
  39106. feature.dbxref_id,
  39107. feature.organism_id,
  39108. feature.name,
  39109. feature.uniquename,
  39110. feature.residues,
  39111. feature.seqlen,
  39112. feature.md5checksum,
  39113. feature.type_id,
  39114. feature.is_analysis,
  39115. feature.is_obsolete,
  39116. feature.timeaccessioned,
  39117. feature.timelastmodified
  39118. FROM (feature
  39119. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39120. WHERE ((cvterm.name)::text = 'targeting_vector'::text);
  39121. --
  39122. -- Name: tasirna; Type: VIEW; Schema: so; Owner: -
  39123. --
  39124. CREATE VIEW tasirna AS
  39125. SELECT feature.feature_id AS tasirna_id,
  39126. feature.feature_id,
  39127. feature.dbxref_id,
  39128. feature.organism_id,
  39129. feature.name,
  39130. feature.uniquename,
  39131. feature.residues,
  39132. feature.seqlen,
  39133. feature.md5checksum,
  39134. feature.type_id,
  39135. feature.is_analysis,
  39136. feature.is_obsolete,
  39137. feature.timeaccessioned,
  39138. feature.timelastmodified
  39139. FROM (feature
  39140. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39141. WHERE ((cvterm.name)::text = 'tasiRNA'::text);
  39142. --
  39143. -- Name: tasirna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  39144. --
  39145. CREATE VIEW tasirna_primary_transcript AS
  39146. SELECT feature.feature_id AS tasirna_primary_transcript_id,
  39147. feature.feature_id,
  39148. feature.dbxref_id,
  39149. feature.organism_id,
  39150. feature.name,
  39151. feature.uniquename,
  39152. feature.residues,
  39153. feature.seqlen,
  39154. feature.md5checksum,
  39155. feature.type_id,
  39156. feature.is_analysis,
  39157. feature.is_obsolete,
  39158. feature.timeaccessioned,
  39159. feature.timelastmodified
  39160. FROM (feature
  39161. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39162. WHERE ((cvterm.name)::text = 'tasiRNA_primary_transcript'::text);
  39163. --
  39164. -- Name: tata_box; Type: VIEW; Schema: so; Owner: -
  39165. --
  39166. CREATE VIEW tata_box AS
  39167. SELECT feature.feature_id AS tata_box_id,
  39168. feature.feature_id,
  39169. feature.dbxref_id,
  39170. feature.organism_id,
  39171. feature.name,
  39172. feature.uniquename,
  39173. feature.residues,
  39174. feature.seqlen,
  39175. feature.md5checksum,
  39176. feature.type_id,
  39177. feature.is_analysis,
  39178. feature.is_obsolete,
  39179. feature.timeaccessioned,
  39180. feature.timelastmodified
  39181. FROM (feature
  39182. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39183. WHERE ((((cvterm.name)::text = 'RNA_polymerase_II_TATA_box'::text) OR ((cvterm.name)::text = 'RNA_polymerase_III_TATA_box'::text)) OR ((cvterm.name)::text = 'TATA_box'::text));
  39184. --
  39185. -- Name: telomerase_rna; Type: VIEW; Schema: so; Owner: -
  39186. --
  39187. CREATE VIEW telomerase_rna AS
  39188. SELECT feature.feature_id AS telomerase_rna_id,
  39189. feature.feature_id,
  39190. feature.dbxref_id,
  39191. feature.organism_id,
  39192. feature.name,
  39193. feature.uniquename,
  39194. feature.residues,
  39195. feature.seqlen,
  39196. feature.md5checksum,
  39197. feature.type_id,
  39198. feature.is_analysis,
  39199. feature.is_obsolete,
  39200. feature.timeaccessioned,
  39201. feature.timelastmodified
  39202. FROM (feature
  39203. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39204. WHERE ((cvterm.name)::text = 'telomerase_RNA'::text);
  39205. --
  39206. -- Name: telomerase_rna_gene; Type: VIEW; Schema: so; Owner: -
  39207. --
  39208. CREATE VIEW telomerase_rna_gene AS
  39209. SELECT feature.feature_id AS telomerase_rna_gene_id,
  39210. feature.feature_id,
  39211. feature.dbxref_id,
  39212. feature.organism_id,
  39213. feature.name,
  39214. feature.uniquename,
  39215. feature.residues,
  39216. feature.seqlen,
  39217. feature.md5checksum,
  39218. feature.type_id,
  39219. feature.is_analysis,
  39220. feature.is_obsolete,
  39221. feature.timeaccessioned,
  39222. feature.timelastmodified
  39223. FROM (feature
  39224. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39225. WHERE ((cvterm.name)::text = 'telomerase_RNA_gene'::text);
  39226. --
  39227. -- Name: telomere; Type: VIEW; Schema: so; Owner: -
  39228. --
  39229. CREATE VIEW telomere AS
  39230. SELECT feature.feature_id AS telomere_id,
  39231. feature.feature_id,
  39232. feature.dbxref_id,
  39233. feature.organism_id,
  39234. feature.name,
  39235. feature.uniquename,
  39236. feature.residues,
  39237. feature.seqlen,
  39238. feature.md5checksum,
  39239. feature.type_id,
  39240. feature.is_analysis,
  39241. feature.is_obsolete,
  39242. feature.timeaccessioned,
  39243. feature.timelastmodified
  39244. FROM (feature
  39245. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39246. WHERE ((cvterm.name)::text = 'telomere'::text);
  39247. --
  39248. -- Name: telomeric_repeat; Type: VIEW; Schema: so; Owner: -
  39249. --
  39250. CREATE VIEW telomeric_repeat AS
  39251. SELECT feature.feature_id AS telomeric_repeat_id,
  39252. feature.feature_id,
  39253. feature.dbxref_id,
  39254. feature.organism_id,
  39255. feature.name,
  39256. feature.uniquename,
  39257. feature.residues,
  39258. feature.seqlen,
  39259. feature.md5checksum,
  39260. feature.type_id,
  39261. feature.is_analysis,
  39262. feature.is_obsolete,
  39263. feature.timeaccessioned,
  39264. feature.timelastmodified
  39265. FROM (feature
  39266. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39267. WHERE ((cvterm.name)::text = 'telomeric_repeat'::text);
  39268. --
  39269. -- Name: template_region; Type: VIEW; Schema: so; Owner: -
  39270. --
  39271. CREATE VIEW template_region AS
  39272. SELECT feature.feature_id AS template_region_id,
  39273. feature.feature_id,
  39274. feature.dbxref_id,
  39275. feature.organism_id,
  39276. feature.name,
  39277. feature.uniquename,
  39278. feature.residues,
  39279. feature.seqlen,
  39280. feature.md5checksum,
  39281. feature.type_id,
  39282. feature.is_analysis,
  39283. feature.is_obsolete,
  39284. feature.timeaccessioned,
  39285. feature.timelastmodified
  39286. FROM (feature
  39287. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39288. WHERE ((cvterm.name)::text = 'template_region'::text);
  39289. --
  39290. -- Name: terminal_codon_variant; Type: VIEW; Schema: so; Owner: -
  39291. --
  39292. CREATE VIEW terminal_codon_variant AS
  39293. SELECT feature.feature_id AS terminal_codon_variant_id,
  39294. feature.feature_id,
  39295. feature.dbxref_id,
  39296. feature.organism_id,
  39297. feature.name,
  39298. feature.uniquename,
  39299. feature.residues,
  39300. feature.seqlen,
  39301. feature.md5checksum,
  39302. feature.type_id,
  39303. feature.is_analysis,
  39304. feature.is_obsolete,
  39305. feature.timeaccessioned,
  39306. feature.timelastmodified
  39307. FROM (feature
  39308. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39309. WHERE ((((((cvterm.name)::text = 'terminator_codon_variant'::text) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text));
  39310. --
  39311. -- Name: terminal_inverted_repeat; Type: VIEW; Schema: so; Owner: -
  39312. --
  39313. CREATE VIEW terminal_inverted_repeat AS
  39314. SELECT feature.feature_id AS terminal_inverted_repeat_id,
  39315. feature.feature_id,
  39316. feature.dbxref_id,
  39317. feature.organism_id,
  39318. feature.name,
  39319. feature.uniquename,
  39320. feature.residues,
  39321. feature.seqlen,
  39322. feature.md5checksum,
  39323. feature.type_id,
  39324. feature.is_analysis,
  39325. feature.is_obsolete,
  39326. feature.timeaccessioned,
  39327. feature.timelastmodified
  39328. FROM (feature
  39329. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39330. WHERE ((((cvterm.name)::text = 'five_prime_terminal_inverted_repeat'::text) OR ((cvterm.name)::text = 'three_prime_terminal_inverted_repeat'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat'::text));
  39331. --
  39332. -- Name: terminal_inverted_repeat_element; Type: VIEW; Schema: so; Owner: -
  39333. --
  39334. CREATE VIEW terminal_inverted_repeat_element AS
  39335. SELECT feature.feature_id AS terminal_inverted_repeat_element_id,
  39336. feature.feature_id,
  39337. feature.dbxref_id,
  39338. feature.organism_id,
  39339. feature.name,
  39340. feature.uniquename,
  39341. feature.residues,
  39342. feature.seqlen,
  39343. feature.md5checksum,
  39344. feature.type_id,
  39345. feature.is_analysis,
  39346. feature.is_obsolete,
  39347. feature.timeaccessioned,
  39348. feature.timelastmodified
  39349. FROM (feature
  39350. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39351. WHERE (((((cvterm.name)::text = 'MITE'::text) OR ((cvterm.name)::text = 'insertion_sequence'::text)) OR ((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat_element'::text));
  39352. --
  39353. -- Name: terminator; Type: VIEW; Schema: so; Owner: -
  39354. --
  39355. CREATE VIEW terminator AS
  39356. SELECT feature.feature_id AS terminator_id,
  39357. feature.feature_id,
  39358. feature.dbxref_id,
  39359. feature.organism_id,
  39360. feature.name,
  39361. feature.uniquename,
  39362. feature.residues,
  39363. feature.seqlen,
  39364. feature.md5checksum,
  39365. feature.type_id,
  39366. feature.is_analysis,
  39367. feature.is_obsolete,
  39368. feature.timeaccessioned,
  39369. feature.timelastmodified
  39370. FROM (feature
  39371. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39372. WHERE (((((((cvterm.name)::text = 'bacterial_terminator'::text) OR ((cvterm.name)::text = 'eukaryotic_terminator'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'terminator_of_type_2_RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'terminator'::text));
  39373. --
  39374. -- Name: terminator_codon_variant; Type: VIEW; Schema: so; Owner: -
  39375. --
  39376. CREATE VIEW terminator_codon_variant AS
  39377. SELECT feature.feature_id AS terminator_codon_variant_id,
  39378. feature.feature_id,
  39379. feature.dbxref_id,
  39380. feature.organism_id,
  39381. feature.name,
  39382. feature.uniquename,
  39383. feature.residues,
  39384. feature.seqlen,
  39385. feature.md5checksum,
  39386. feature.type_id,
  39387. feature.is_analysis,
  39388. feature.is_obsolete,
  39389. feature.timeaccessioned,
  39390. feature.timelastmodified
  39391. FROM (feature
  39392. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39393. WHERE ((((cvterm.name)::text = 'stop_retained_variant'::text) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text));
  39394. --
  39395. -- Name: terminator_of_type_2_rnapol_iii_promoter; Type: VIEW; Schema: so; Owner: -
  39396. --
  39397. CREATE VIEW terminator_of_type_2_rnapol_iii_promoter AS
  39398. SELECT feature.feature_id AS terminator_of_type_2_rnapol_iii_promoter_id,
  39399. feature.feature_id,
  39400. feature.dbxref_id,
  39401. feature.organism_id,
  39402. feature.name,
  39403. feature.uniquename,
  39404. feature.residues,
  39405. feature.seqlen,
  39406. feature.md5checksum,
  39407. feature.type_id,
  39408. feature.is_analysis,
  39409. feature.is_obsolete,
  39410. feature.timeaccessioned,
  39411. feature.timelastmodified
  39412. FROM (feature
  39413. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39414. WHERE ((cvterm.name)::text = 'terminator_of_type_2_RNApol_III_promoter'::text);
  39415. --
  39416. -- Name: tetraloop; Type: VIEW; Schema: so; Owner: -
  39417. --
  39418. CREATE VIEW tetraloop AS
  39419. SELECT feature.feature_id AS tetraloop_id,
  39420. feature.feature_id,
  39421. feature.dbxref_id,
  39422. feature.organism_id,
  39423. feature.name,
  39424. feature.uniquename,
  39425. feature.residues,
  39426. feature.seqlen,
  39427. feature.md5checksum,
  39428. feature.type_id,
  39429. feature.is_analysis,
  39430. feature.is_obsolete,
  39431. feature.timeaccessioned,
  39432. feature.timelastmodified
  39433. FROM (feature
  39434. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39435. WHERE ((cvterm.name)::text = 'tetraloop'::text);
  39436. --
  39437. -- Name: tetranuc_repeat_microsat; Type: VIEW; Schema: so; Owner: -
  39438. --
  39439. CREATE VIEW tetranuc_repeat_microsat AS
  39440. SELECT feature.feature_id AS tetranuc_repeat_microsat_id,
  39441. feature.feature_id,
  39442. feature.dbxref_id,
  39443. feature.organism_id,
  39444. feature.name,
  39445. feature.uniquename,
  39446. feature.residues,
  39447. feature.seqlen,
  39448. feature.md5checksum,
  39449. feature.type_id,
  39450. feature.is_analysis,
  39451. feature.is_obsolete,
  39452. feature.timeaccessioned,
  39453. feature.timelastmodified
  39454. FROM (feature
  39455. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39456. WHERE ((cvterm.name)::text = 'tetranucleotide_repeat_microsatellite_feature'::text);
  39457. --
  39458. -- Name: tf_binding_site; Type: VIEW; Schema: so; Owner: -
  39459. --
  39460. CREATE VIEW tf_binding_site AS
  39461. SELECT feature.feature_id AS tf_binding_site_id,
  39462. feature.feature_id,
  39463. feature.dbxref_id,
  39464. feature.organism_id,
  39465. feature.name,
  39466. feature.uniquename,
  39467. feature.residues,
  39468. feature.seqlen,
  39469. feature.md5checksum,
  39470. feature.type_id,
  39471. feature.is_analysis,
  39472. feature.is_obsolete,
  39473. feature.timeaccessioned,
  39474. feature.timelastmodified
  39475. FROM (feature
  39476. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39477. WHERE ((cvterm.name)::text = 'TF_binding_site'::text);
  39478. --
  39479. -- Name: tf_binding_site_variant; Type: VIEW; Schema: so; Owner: -
  39480. --
  39481. CREATE VIEW tf_binding_site_variant AS
  39482. SELECT feature.feature_id AS tf_binding_site_variant_id,
  39483. feature.feature_id,
  39484. feature.dbxref_id,
  39485. feature.organism_id,
  39486. feature.name,
  39487. feature.uniquename,
  39488. feature.residues,
  39489. feature.seqlen,
  39490. feature.md5checksum,
  39491. feature.type_id,
  39492. feature.is_analysis,
  39493. feature.is_obsolete,
  39494. feature.timeaccessioned,
  39495. feature.timelastmodified
  39496. FROM (feature
  39497. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39498. WHERE ((cvterm.name)::text = 'TF_binding_site_variant'::text);
  39499. --
  39500. -- Name: thr_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  39501. --
  39502. CREATE VIEW thr_trna_primary_transcript AS
  39503. SELECT feature.feature_id AS thr_trna_primary_transcript_id,
  39504. feature.feature_id,
  39505. feature.dbxref_id,
  39506. feature.organism_id,
  39507. feature.name,
  39508. feature.uniquename,
  39509. feature.residues,
  39510. feature.seqlen,
  39511. feature.md5checksum,
  39512. feature.type_id,
  39513. feature.is_analysis,
  39514. feature.is_obsolete,
  39515. feature.timeaccessioned,
  39516. feature.timelastmodified
  39517. FROM (feature
  39518. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39519. WHERE ((cvterm.name)::text = 'threonine_tRNA_primary_transcript'::text);
  39520. --
  39521. -- Name: three_methylcytidine; Type: VIEW; Schema: so; Owner: -
  39522. --
  39523. CREATE VIEW three_methylcytidine AS
  39524. SELECT feature.feature_id AS three_methylcytidine_id,
  39525. feature.feature_id,
  39526. feature.dbxref_id,
  39527. feature.organism_id,
  39528. feature.name,
  39529. feature.uniquename,
  39530. feature.residues,
  39531. feature.seqlen,
  39532. feature.md5checksum,
  39533. feature.type_id,
  39534. feature.is_analysis,
  39535. feature.is_obsolete,
  39536. feature.timeaccessioned,
  39537. feature.timelastmodified
  39538. FROM (feature
  39539. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39540. WHERE ((cvterm.name)::text = 'three_methylcytidine'::text);
  39541. --
  39542. -- Name: three_methylpseudouridine; Type: VIEW; Schema: so; Owner: -
  39543. --
  39544. CREATE VIEW three_methylpseudouridine AS
  39545. SELECT feature.feature_id AS three_methylpseudouridine_id,
  39546. feature.feature_id,
  39547. feature.dbxref_id,
  39548. feature.organism_id,
  39549. feature.name,
  39550. feature.uniquename,
  39551. feature.residues,
  39552. feature.seqlen,
  39553. feature.md5checksum,
  39554. feature.type_id,
  39555. feature.is_analysis,
  39556. feature.is_obsolete,
  39557. feature.timeaccessioned,
  39558. feature.timelastmodified
  39559. FROM (feature
  39560. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39561. WHERE ((cvterm.name)::text = 'three_methylpseudouridine'::text);
  39562. --
  39563. -- Name: three_methyluridine; Type: VIEW; Schema: so; Owner: -
  39564. --
  39565. CREATE VIEW three_methyluridine AS
  39566. SELECT feature.feature_id AS three_methyluridine_id,
  39567. feature.feature_id,
  39568. feature.dbxref_id,
  39569. feature.organism_id,
  39570. feature.name,
  39571. feature.uniquename,
  39572. feature.residues,
  39573. feature.seqlen,
  39574. feature.md5checksum,
  39575. feature.type_id,
  39576. feature.is_analysis,
  39577. feature.is_obsolete,
  39578. feature.timeaccessioned,
  39579. feature.timelastmodified
  39580. FROM (feature
  39581. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39582. WHERE ((cvterm.name)::text = 'three_methyluridine'::text);
  39583. --
  39584. -- Name: three_prime_cis_splice_site; Type: VIEW; Schema: so; Owner: -
  39585. --
  39586. CREATE VIEW three_prime_cis_splice_site AS
  39587. SELECT feature.feature_id AS three_prime_cis_splice_site_id,
  39588. feature.feature_id,
  39589. feature.dbxref_id,
  39590. feature.organism_id,
  39591. feature.name,
  39592. feature.uniquename,
  39593. feature.residues,
  39594. feature.seqlen,
  39595. feature.md5checksum,
  39596. feature.type_id,
  39597. feature.is_analysis,
  39598. feature.is_obsolete,
  39599. feature.timeaccessioned,
  39600. feature.timelastmodified
  39601. FROM (feature
  39602. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39603. WHERE ((((cvterm.name)::text = 'canonical_three_prime_splice_site'::text) OR ((cvterm.name)::text = 'non_canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'three_prime_cis_splice_site'::text));
  39604. --
  39605. -- Name: three_prime_clip; Type: VIEW; Schema: so; Owner: -
  39606. --
  39607. CREATE VIEW three_prime_clip AS
  39608. SELECT feature.feature_id AS three_prime_clip_id,
  39609. feature.feature_id,
  39610. feature.dbxref_id,
  39611. feature.organism_id,
  39612. feature.name,
  39613. feature.uniquename,
  39614. feature.residues,
  39615. feature.seqlen,
  39616. feature.md5checksum,
  39617. feature.type_id,
  39618. feature.is_analysis,
  39619. feature.is_obsolete,
  39620. feature.timeaccessioned,
  39621. feature.timelastmodified
  39622. FROM (feature
  39623. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39624. WHERE ((cvterm.name)::text = 'three_prime_clip'::text);
  39625. --
  39626. -- Name: three_prime_coding_exon; Type: VIEW; Schema: so; Owner: -
  39627. --
  39628. CREATE VIEW three_prime_coding_exon AS
  39629. SELECT feature.feature_id AS three_prime_coding_exon_id,
  39630. feature.feature_id,
  39631. feature.dbxref_id,
  39632. feature.organism_id,
  39633. feature.name,
  39634. feature.uniquename,
  39635. feature.residues,
  39636. feature.seqlen,
  39637. feature.md5checksum,
  39638. feature.type_id,
  39639. feature.is_analysis,
  39640. feature.is_obsolete,
  39641. feature.timeaccessioned,
  39642. feature.timelastmodified
  39643. FROM (feature
  39644. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39645. WHERE ((cvterm.name)::text = 'three_prime_coding_exon'::text);
  39646. --
  39647. -- Name: three_prime_coding_exon_coding_region; Type: VIEW; Schema: so; Owner: -
  39648. --
  39649. CREATE VIEW three_prime_coding_exon_coding_region AS
  39650. SELECT feature.feature_id AS three_prime_coding_exon_coding_region_id,
  39651. feature.feature_id,
  39652. feature.dbxref_id,
  39653. feature.organism_id,
  39654. feature.name,
  39655. feature.uniquename,
  39656. feature.residues,
  39657. feature.seqlen,
  39658. feature.md5checksum,
  39659. feature.type_id,
  39660. feature.is_analysis,
  39661. feature.is_obsolete,
  39662. feature.timeaccessioned,
  39663. feature.timelastmodified
  39664. FROM (feature
  39665. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39666. WHERE ((cvterm.name)::text = 'three_prime_coding_exon_coding_region'::text);
  39667. --
  39668. -- Name: three_prime_coding_exon_noncoding_region; Type: VIEW; Schema: so; Owner: -
  39669. --
  39670. CREATE VIEW three_prime_coding_exon_noncoding_region AS
  39671. SELECT feature.feature_id AS three_prime_coding_exon_noncoding_region_id,
  39672. feature.feature_id,
  39673. feature.dbxref_id,
  39674. feature.organism_id,
  39675. feature.name,
  39676. feature.uniquename,
  39677. feature.residues,
  39678. feature.seqlen,
  39679. feature.md5checksum,
  39680. feature.type_id,
  39681. feature.is_analysis,
  39682. feature.is_obsolete,
  39683. feature.timeaccessioned,
  39684. feature.timelastmodified
  39685. FROM (feature
  39686. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39687. WHERE ((cvterm.name)::text = 'three_prime_coding_exon_noncoding_region'::text);
  39688. --
  39689. -- Name: three_prime_d_heptamer; Type: VIEW; Schema: so; Owner: -
  39690. --
  39691. CREATE VIEW three_prime_d_heptamer AS
  39692. SELECT feature.feature_id AS three_prime_d_heptamer_id,
  39693. feature.feature_id,
  39694. feature.dbxref_id,
  39695. feature.organism_id,
  39696. feature.name,
  39697. feature.uniquename,
  39698. feature.residues,
  39699. feature.seqlen,
  39700. feature.md5checksum,
  39701. feature.type_id,
  39702. feature.is_analysis,
  39703. feature.is_obsolete,
  39704. feature.timeaccessioned,
  39705. feature.timelastmodified
  39706. FROM (feature
  39707. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39708. WHERE ((cvterm.name)::text = 'three_prime_D_heptamer'::text);
  39709. --
  39710. -- Name: three_prime_d_nonamer; Type: VIEW; Schema: so; Owner: -
  39711. --
  39712. CREATE VIEW three_prime_d_nonamer AS
  39713. SELECT feature.feature_id AS three_prime_d_nonamer_id,
  39714. feature.feature_id,
  39715. feature.dbxref_id,
  39716. feature.organism_id,
  39717. feature.name,
  39718. feature.uniquename,
  39719. feature.residues,
  39720. feature.seqlen,
  39721. feature.md5checksum,
  39722. feature.type_id,
  39723. feature.is_analysis,
  39724. feature.is_obsolete,
  39725. feature.timeaccessioned,
  39726. feature.timelastmodified
  39727. FROM (feature
  39728. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39729. WHERE ((cvterm.name)::text = 'three_prime_D_nonamer'::text);
  39730. --
  39731. -- Name: three_prime_d_recombination_signal_sequence; Type: VIEW; Schema: so; Owner: -
  39732. --
  39733. CREATE VIEW three_prime_d_recombination_signal_sequence AS
  39734. SELECT feature.feature_id AS three_prime_d_recombination_signal_sequence_id,
  39735. feature.feature_id,
  39736. feature.dbxref_id,
  39737. feature.organism_id,
  39738. feature.name,
  39739. feature.uniquename,
  39740. feature.residues,
  39741. feature.seqlen,
  39742. feature.md5checksum,
  39743. feature.type_id,
  39744. feature.is_analysis,
  39745. feature.is_obsolete,
  39746. feature.timeaccessioned,
  39747. feature.timelastmodified
  39748. FROM (feature
  39749. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39750. WHERE ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text);
  39751. --
  39752. -- Name: three_prime_d_spacer; Type: VIEW; Schema: so; Owner: -
  39753. --
  39754. CREATE VIEW three_prime_d_spacer AS
  39755. SELECT feature.feature_id AS three_prime_d_spacer_id,
  39756. feature.feature_id,
  39757. feature.dbxref_id,
  39758. feature.organism_id,
  39759. feature.name,
  39760. feature.uniquename,
  39761. feature.residues,
  39762. feature.seqlen,
  39763. feature.md5checksum,
  39764. feature.type_id,
  39765. feature.is_analysis,
  39766. feature.is_obsolete,
  39767. feature.timeaccessioned,
  39768. feature.timelastmodified
  39769. FROM (feature
  39770. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39771. WHERE ((cvterm.name)::text = 'three_prime_D_spacer'::text);
  39772. --
  39773. -- Name: three_prime_est; Type: VIEW; Schema: so; Owner: -
  39774. --
  39775. CREATE VIEW three_prime_est AS
  39776. SELECT feature.feature_id AS three_prime_est_id,
  39777. feature.feature_id,
  39778. feature.dbxref_id,
  39779. feature.organism_id,
  39780. feature.name,
  39781. feature.uniquename,
  39782. feature.residues,
  39783. feature.seqlen,
  39784. feature.md5checksum,
  39785. feature.type_id,
  39786. feature.is_analysis,
  39787. feature.is_obsolete,
  39788. feature.timeaccessioned,
  39789. feature.timelastmodified
  39790. FROM (feature
  39791. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39792. WHERE ((cvterm.name)::text = 'three_prime_EST'::text);
  39793. --
  39794. -- Name: three_prime_five_prime_overlap; Type: VIEW; Schema: so; Owner: -
  39795. --
  39796. CREATE VIEW three_prime_five_prime_overlap AS
  39797. SELECT feature.feature_id AS three_prime_five_prime_overlap_id,
  39798. feature.feature_id,
  39799. feature.dbxref_id,
  39800. feature.organism_id,
  39801. feature.name,
  39802. feature.uniquename,
  39803. feature.residues,
  39804. feature.seqlen,
  39805. feature.md5checksum,
  39806. feature.type_id,
  39807. feature.is_analysis,
  39808. feature.is_obsolete,
  39809. feature.timeaccessioned,
  39810. feature.timelastmodified
  39811. FROM (feature
  39812. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39813. WHERE ((cvterm.name)::text = 'three_prime_five_prime_overlap'::text);
  39814. --
  39815. -- Name: three_prime_flanking_region; Type: VIEW; Schema: so; Owner: -
  39816. --
  39817. CREATE VIEW three_prime_flanking_region AS
  39818. SELECT feature.feature_id AS three_prime_flanking_region_id,
  39819. feature.feature_id,
  39820. feature.dbxref_id,
  39821. feature.organism_id,
  39822. feature.name,
  39823. feature.uniquename,
  39824. feature.residues,
  39825. feature.seqlen,
  39826. feature.md5checksum,
  39827. feature.type_id,
  39828. feature.is_analysis,
  39829. feature.is_obsolete,
  39830. feature.timeaccessioned,
  39831. feature.timelastmodified
  39832. FROM (feature
  39833. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39834. WHERE ((cvterm.name)::text = 'three_prime_flanking_region'::text);
  39835. --
  39836. -- Name: three_prime_intron; Type: VIEW; Schema: so; Owner: -
  39837. --
  39838. CREATE VIEW three_prime_intron AS
  39839. SELECT feature.feature_id AS three_prime_intron_id,
  39840. feature.feature_id,
  39841. feature.dbxref_id,
  39842. feature.organism_id,
  39843. feature.name,
  39844. feature.uniquename,
  39845. feature.residues,
  39846. feature.seqlen,
  39847. feature.md5checksum,
  39848. feature.type_id,
  39849. feature.is_analysis,
  39850. feature.is_obsolete,
  39851. feature.timeaccessioned,
  39852. feature.timelastmodified
  39853. FROM (feature
  39854. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39855. WHERE ((cvterm.name)::text = 'three_prime_intron'::text);
  39856. --
  39857. -- Name: three_prime_ltr; Type: VIEW; Schema: so; Owner: -
  39858. --
  39859. CREATE VIEW three_prime_ltr AS
  39860. SELECT feature.feature_id AS three_prime_ltr_id,
  39861. feature.feature_id,
  39862. feature.dbxref_id,
  39863. feature.organism_id,
  39864. feature.name,
  39865. feature.uniquename,
  39866. feature.residues,
  39867. feature.seqlen,
  39868. feature.md5checksum,
  39869. feature.type_id,
  39870. feature.is_analysis,
  39871. feature.is_obsolete,
  39872. feature.timeaccessioned,
  39873. feature.timelastmodified
  39874. FROM (feature
  39875. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39876. WHERE ((cvterm.name)::text = 'three_prime_LTR'::text);
  39877. --
  39878. -- Name: three_prime_ltr_component; Type: VIEW; Schema: so; Owner: -
  39879. --
  39880. CREATE VIEW three_prime_ltr_component AS
  39881. SELECT feature.feature_id AS three_prime_ltr_component_id,
  39882. feature.feature_id,
  39883. feature.dbxref_id,
  39884. feature.organism_id,
  39885. feature.name,
  39886. feature.uniquename,
  39887. feature.residues,
  39888. feature.seqlen,
  39889. feature.md5checksum,
  39890. feature.type_id,
  39891. feature.is_analysis,
  39892. feature.is_obsolete,
  39893. feature.timeaccessioned,
  39894. feature.timelastmodified
  39895. FROM (feature
  39896. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39897. WHERE (((((cvterm.name)::text = 'R_three_prime_LTR_region'::text) OR ((cvterm.name)::text = 'U3_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'three_prime_LTR_component'::text));
  39898. --
  39899. -- Name: three_prime_noncoding_exon; Type: VIEW; Schema: so; Owner: -
  39900. --
  39901. CREATE VIEW three_prime_noncoding_exon AS
  39902. SELECT feature.feature_id AS three_prime_noncoding_exon_id,
  39903. feature.feature_id,
  39904. feature.dbxref_id,
  39905. feature.organism_id,
  39906. feature.name,
  39907. feature.uniquename,
  39908. feature.residues,
  39909. feature.seqlen,
  39910. feature.md5checksum,
  39911. feature.type_id,
  39912. feature.is_analysis,
  39913. feature.is_obsolete,
  39914. feature.timeaccessioned,
  39915. feature.timelastmodified
  39916. FROM (feature
  39917. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39918. WHERE ((cvterm.name)::text = 'three_prime_noncoding_exon'::text);
  39919. --
  39920. -- Name: three_prime_race_clone; Type: VIEW; Schema: so; Owner: -
  39921. --
  39922. CREATE VIEW three_prime_race_clone AS
  39923. SELECT feature.feature_id AS three_prime_race_clone_id,
  39924. feature.feature_id,
  39925. feature.dbxref_id,
  39926. feature.organism_id,
  39927. feature.name,
  39928. feature.uniquename,
  39929. feature.residues,
  39930. feature.seqlen,
  39931. feature.md5checksum,
  39932. feature.type_id,
  39933. feature.is_analysis,
  39934. feature.is_obsolete,
  39935. feature.timeaccessioned,
  39936. feature.timelastmodified
  39937. FROM (feature
  39938. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39939. WHERE ((cvterm.name)::text = 'three_prime_RACE_clone'::text);
  39940. --
  39941. -- Name: three_prime_recoding_site; Type: VIEW; Schema: so; Owner: -
  39942. --
  39943. CREATE VIEW three_prime_recoding_site AS
  39944. SELECT feature.feature_id AS three_prime_recoding_site_id,
  39945. feature.feature_id,
  39946. feature.dbxref_id,
  39947. feature.organism_id,
  39948. feature.name,
  39949. feature.uniquename,
  39950. feature.residues,
  39951. feature.seqlen,
  39952. feature.md5checksum,
  39953. feature.type_id,
  39954. feature.is_analysis,
  39955. feature.is_obsolete,
  39956. feature.timeaccessioned,
  39957. feature.timelastmodified
  39958. FROM (feature
  39959. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39960. WHERE ((((((cvterm.name)::text = 'three_prime_stem_loop_structure'::text) OR ((cvterm.name)::text = 'flanking_three_prime_quadruplet_recoding_signal'::text)) OR ((cvterm.name)::text = 'three_prime_repeat_recoding_signal'::text)) OR ((cvterm.name)::text = 'distant_three_prime_recoding_signal'::text)) OR ((cvterm.name)::text = 'three_prime_recoding_site'::text));
  39961. --
  39962. -- Name: three_prime_repeat_recoding_signal; Type: VIEW; Schema: so; Owner: -
  39963. --
  39964. CREATE VIEW three_prime_repeat_recoding_signal AS
  39965. SELECT feature.feature_id AS three_prime_repeat_recoding_signal_id,
  39966. feature.feature_id,
  39967. feature.dbxref_id,
  39968. feature.organism_id,
  39969. feature.name,
  39970. feature.uniquename,
  39971. feature.residues,
  39972. feature.seqlen,
  39973. feature.md5checksum,
  39974. feature.type_id,
  39975. feature.is_analysis,
  39976. feature.is_obsolete,
  39977. feature.timeaccessioned,
  39978. feature.timelastmodified
  39979. FROM (feature
  39980. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  39981. WHERE ((cvterm.name)::text = 'three_prime_repeat_recoding_signal'::text);
  39982. --
  39983. -- Name: three_prime_restriction_enzyme_junction; Type: VIEW; Schema: so; Owner: -
  39984. --
  39985. CREATE VIEW three_prime_restriction_enzyme_junction AS
  39986. SELECT feature.feature_id AS three_prime_restriction_enzyme_junction_id,
  39987. feature.feature_id,
  39988. feature.dbxref_id,
  39989. feature.organism_id,
  39990. feature.name,
  39991. feature.uniquename,
  39992. feature.residues,
  39993. feature.seqlen,
  39994. feature.md5checksum,
  39995. feature.type_id,
  39996. feature.is_analysis,
  39997. feature.is_obsolete,
  39998. feature.timeaccessioned,
  39999. feature.timelastmodified
  40000. FROM (feature
  40001. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40002. WHERE ((cvterm.name)::text = 'three_prime_restriction_enzyme_junction'::text);
  40003. --
  40004. -- Name: three_prime_rst; Type: VIEW; Schema: so; Owner: -
  40005. --
  40006. CREATE VIEW three_prime_rst AS
  40007. SELECT feature.feature_id AS three_prime_rst_id,
  40008. feature.feature_id,
  40009. feature.dbxref_id,
  40010. feature.organism_id,
  40011. feature.name,
  40012. feature.uniquename,
  40013. feature.residues,
  40014. feature.seqlen,
  40015. feature.md5checksum,
  40016. feature.type_id,
  40017. feature.is_analysis,
  40018. feature.is_obsolete,
  40019. feature.timeaccessioned,
  40020. feature.timelastmodified
  40021. FROM (feature
  40022. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40023. WHERE ((cvterm.name)::text = 'three_prime_RST'::text);
  40024. --
  40025. -- Name: three_prime_stem_loop_structure; Type: VIEW; Schema: so; Owner: -
  40026. --
  40027. CREATE VIEW three_prime_stem_loop_structure AS
  40028. SELECT feature.feature_id AS three_prime_stem_loop_structure_id,
  40029. feature.feature_id,
  40030. feature.dbxref_id,
  40031. feature.organism_id,
  40032. feature.name,
  40033. feature.uniquename,
  40034. feature.residues,
  40035. feature.seqlen,
  40036. feature.md5checksum,
  40037. feature.type_id,
  40038. feature.is_analysis,
  40039. feature.is_obsolete,
  40040. feature.timeaccessioned,
  40041. feature.timelastmodified
  40042. FROM (feature
  40043. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40044. WHERE ((cvterm.name)::text = 'three_prime_stem_loop_structure'::text);
  40045. --
  40046. -- Name: three_prime_terminal_inverted_repeat; Type: VIEW; Schema: so; Owner: -
  40047. --
  40048. CREATE VIEW three_prime_terminal_inverted_repeat AS
  40049. SELECT feature.feature_id AS three_prime_terminal_inverted_repeat_id,
  40050. feature.feature_id,
  40051. feature.dbxref_id,
  40052. feature.organism_id,
  40053. feature.name,
  40054. feature.uniquename,
  40055. feature.residues,
  40056. feature.seqlen,
  40057. feature.md5checksum,
  40058. feature.type_id,
  40059. feature.is_analysis,
  40060. feature.is_obsolete,
  40061. feature.timeaccessioned,
  40062. feature.timelastmodified
  40063. FROM (feature
  40064. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40065. WHERE ((cvterm.name)::text = 'three_prime_terminal_inverted_repeat'::text);
  40066. --
  40067. -- Name: three_prime_three_prime_overlap; Type: VIEW; Schema: so; Owner: -
  40068. --
  40069. CREATE VIEW three_prime_three_prime_overlap AS
  40070. SELECT feature.feature_id AS three_prime_three_prime_overlap_id,
  40071. feature.feature_id,
  40072. feature.dbxref_id,
  40073. feature.organism_id,
  40074. feature.name,
  40075. feature.uniquename,
  40076. feature.residues,
  40077. feature.seqlen,
  40078. feature.md5checksum,
  40079. feature.type_id,
  40080. feature.is_analysis,
  40081. feature.is_obsolete,
  40082. feature.timeaccessioned,
  40083. feature.timelastmodified
  40084. FROM (feature
  40085. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40086. WHERE ((cvterm.name)::text = 'three_prime_three_prime_overlap'::text);
  40087. --
  40088. -- Name: three_prime_ust; Type: VIEW; Schema: so; Owner: -
  40089. --
  40090. CREATE VIEW three_prime_ust AS
  40091. SELECT feature.feature_id AS three_prime_ust_id,
  40092. feature.feature_id,
  40093. feature.dbxref_id,
  40094. feature.organism_id,
  40095. feature.name,
  40096. feature.uniquename,
  40097. feature.residues,
  40098. feature.seqlen,
  40099. feature.md5checksum,
  40100. feature.type_id,
  40101. feature.is_analysis,
  40102. feature.is_obsolete,
  40103. feature.timeaccessioned,
  40104. feature.timelastmodified
  40105. FROM (feature
  40106. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40107. WHERE ((cvterm.name)::text = 'three_prime_UST'::text);
  40108. --
  40109. -- Name: three_prime_utr; Type: VIEW; Schema: so; Owner: -
  40110. --
  40111. CREATE VIEW three_prime_utr AS
  40112. SELECT feature.feature_id AS three_prime_utr_id,
  40113. feature.feature_id,
  40114. feature.dbxref_id,
  40115. feature.organism_id,
  40116. feature.name,
  40117. feature.uniquename,
  40118. feature.residues,
  40119. feature.seqlen,
  40120. feature.md5checksum,
  40121. feature.type_id,
  40122. feature.is_analysis,
  40123. feature.is_obsolete,
  40124. feature.timeaccessioned,
  40125. feature.timelastmodified
  40126. FROM (feature
  40127. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40128. WHERE ((cvterm.name)::text = 'three_prime_UTR'::text);
  40129. --
  40130. -- Name: three_prime_utr_intron; Type: VIEW; Schema: so; Owner: -
  40131. --
  40132. CREATE VIEW three_prime_utr_intron AS
  40133. SELECT feature.feature_id AS three_prime_utr_intron_id,
  40134. feature.feature_id,
  40135. feature.dbxref_id,
  40136. feature.organism_id,
  40137. feature.name,
  40138. feature.uniquename,
  40139. feature.residues,
  40140. feature.seqlen,
  40141. feature.md5checksum,
  40142. feature.type_id,
  40143. feature.is_analysis,
  40144. feature.is_obsolete,
  40145. feature.timeaccessioned,
  40146. feature.timelastmodified
  40147. FROM (feature
  40148. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40149. WHERE ((cvterm.name)::text = 'three_prime_UTR_intron'::text);
  40150. --
  40151. -- Name: three_prime_utr_variant; Type: VIEW; Schema: so; Owner: -
  40152. --
  40153. CREATE VIEW three_prime_utr_variant AS
  40154. SELECT feature.feature_id AS three_prime_utr_variant_id,
  40155. feature.feature_id,
  40156. feature.dbxref_id,
  40157. feature.organism_id,
  40158. feature.name,
  40159. feature.uniquename,
  40160. feature.residues,
  40161. feature.seqlen,
  40162. feature.md5checksum,
  40163. feature.type_id,
  40164. feature.is_analysis,
  40165. feature.is_obsolete,
  40166. feature.timeaccessioned,
  40167. feature.timelastmodified
  40168. FROM (feature
  40169. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40170. WHERE ((cvterm.name)::text = '3_prime_UTR_variant'::text);
  40171. --
  40172. -- Name: three_ten_helix; Type: VIEW; Schema: so; Owner: -
  40173. --
  40174. CREATE VIEW three_ten_helix AS
  40175. SELECT feature.feature_id AS three_ten_helix_id,
  40176. feature.feature_id,
  40177. feature.dbxref_id,
  40178. feature.organism_id,
  40179. feature.name,
  40180. feature.uniquename,
  40181. feature.residues,
  40182. feature.seqlen,
  40183. feature.md5checksum,
  40184. feature.type_id,
  40185. feature.is_analysis,
  40186. feature.is_obsolete,
  40187. feature.timeaccessioned,
  40188. feature.timelastmodified
  40189. FROM (feature
  40190. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40191. WHERE ((cvterm.name)::text = 'three_ten_helix'::text);
  40192. --
  40193. -- Name: three_three_amino_three_carboxypropyl_uridine; Type: VIEW; Schema: so; Owner: -
  40194. --
  40195. CREATE VIEW three_three_amino_three_carboxypropyl_uridine AS
  40196. SELECT feature.feature_id AS three_three_amino_three_carboxypropyl_uridine_id,
  40197. feature.feature_id,
  40198. feature.dbxref_id,
  40199. feature.organism_id,
  40200. feature.name,
  40201. feature.uniquename,
  40202. feature.residues,
  40203. feature.seqlen,
  40204. feature.md5checksum,
  40205. feature.type_id,
  40206. feature.is_analysis,
  40207. feature.is_obsolete,
  40208. feature.timeaccessioned,
  40209. feature.timelastmodified
  40210. FROM (feature
  40211. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40212. WHERE ((cvterm.name)::text = 'three_three_amino_three_carboxypropyl_uridine'::text);
  40213. --
  40214. -- Name: three_two_prime_o_dimethyluridine; Type: VIEW; Schema: so; Owner: -
  40215. --
  40216. CREATE VIEW three_two_prime_o_dimethyluridine AS
  40217. SELECT feature.feature_id AS three_two_prime_o_dimethyluridine_id,
  40218. feature.feature_id,
  40219. feature.dbxref_id,
  40220. feature.organism_id,
  40221. feature.name,
  40222. feature.uniquename,
  40223. feature.residues,
  40224. feature.seqlen,
  40225. feature.md5checksum,
  40226. feature.type_id,
  40227. feature.is_analysis,
  40228. feature.is_obsolete,
  40229. feature.timeaccessioned,
  40230. feature.timelastmodified
  40231. FROM (feature
  40232. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40233. WHERE ((cvterm.name)::text = 'three_two_prime_O_dimethyluridine'::text);
  40234. --
  40235. -- Name: threed_polypeptide_structure_variant; Type: VIEW; Schema: so; Owner: -
  40236. --
  40237. CREATE VIEW threed_polypeptide_structure_variant AS
  40238. SELECT feature.feature_id AS threed_polypeptide_structure_variant_id,
  40239. feature.feature_id,
  40240. feature.dbxref_id,
  40241. feature.organism_id,
  40242. feature.name,
  40243. feature.uniquename,
  40244. feature.residues,
  40245. feature.seqlen,
  40246. feature.md5checksum,
  40247. feature.type_id,
  40248. feature.is_analysis,
  40249. feature.is_obsolete,
  40250. feature.timeaccessioned,
  40251. feature.timelastmodified
  40252. FROM (feature
  40253. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40254. WHERE ((((cvterm.name)::text = 'complex_3D_structural_variant'::text) OR ((cvterm.name)::text = 'conformational_change_variant'::text)) OR ((cvterm.name)::text = '3D_polypeptide_structure_variant'::text));
  40255. --
  40256. -- Name: threonine; Type: VIEW; Schema: so; Owner: -
  40257. --
  40258. CREATE VIEW threonine AS
  40259. SELECT feature.feature_id AS threonine_id,
  40260. feature.feature_id,
  40261. feature.dbxref_id,
  40262. feature.organism_id,
  40263. feature.name,
  40264. feature.uniquename,
  40265. feature.residues,
  40266. feature.seqlen,
  40267. feature.md5checksum,
  40268. feature.type_id,
  40269. feature.is_analysis,
  40270. feature.is_obsolete,
  40271. feature.timeaccessioned,
  40272. feature.timelastmodified
  40273. FROM (feature
  40274. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40275. WHERE ((cvterm.name)::text = 'threonine'::text);
  40276. --
  40277. -- Name: threonyl_trna; Type: VIEW; Schema: so; Owner: -
  40278. --
  40279. CREATE VIEW threonyl_trna AS
  40280. SELECT feature.feature_id AS threonyl_trna_id,
  40281. feature.feature_id,
  40282. feature.dbxref_id,
  40283. feature.organism_id,
  40284. feature.name,
  40285. feature.uniquename,
  40286. feature.residues,
  40287. feature.seqlen,
  40288. feature.md5checksum,
  40289. feature.type_id,
  40290. feature.is_analysis,
  40291. feature.is_obsolete,
  40292. feature.timeaccessioned,
  40293. feature.timelastmodified
  40294. FROM (feature
  40295. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40296. WHERE ((cvterm.name)::text = 'threonyl_tRNA'::text);
  40297. --
  40298. -- Name: tiling_path; Type: VIEW; Schema: so; Owner: -
  40299. --
  40300. CREATE VIEW tiling_path AS
  40301. SELECT feature.feature_id AS tiling_path_id,
  40302. feature.feature_id,
  40303. feature.dbxref_id,
  40304. feature.organism_id,
  40305. feature.name,
  40306. feature.uniquename,
  40307. feature.residues,
  40308. feature.seqlen,
  40309. feature.md5checksum,
  40310. feature.type_id,
  40311. feature.is_analysis,
  40312. feature.is_obsolete,
  40313. feature.timeaccessioned,
  40314. feature.timelastmodified
  40315. FROM (feature
  40316. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40317. WHERE ((cvterm.name)::text = 'tiling_path'::text);
  40318. --
  40319. -- Name: tiling_path_clone; Type: VIEW; Schema: so; Owner: -
  40320. --
  40321. CREATE VIEW tiling_path_clone AS
  40322. SELECT feature.feature_id AS tiling_path_clone_id,
  40323. feature.feature_id,
  40324. feature.dbxref_id,
  40325. feature.organism_id,
  40326. feature.name,
  40327. feature.uniquename,
  40328. feature.residues,
  40329. feature.seqlen,
  40330. feature.md5checksum,
  40331. feature.type_id,
  40332. feature.is_analysis,
  40333. feature.is_obsolete,
  40334. feature.timeaccessioned,
  40335. feature.timelastmodified
  40336. FROM (feature
  40337. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40338. WHERE ((cvterm.name)::text = 'tiling_path_clone'::text);
  40339. --
  40340. -- Name: tiling_path_fragment; Type: VIEW; Schema: so; Owner: -
  40341. --
  40342. CREATE VIEW tiling_path_fragment AS
  40343. SELECT feature.feature_id AS tiling_path_fragment_id,
  40344. feature.feature_id,
  40345. feature.dbxref_id,
  40346. feature.organism_id,
  40347. feature.name,
  40348. feature.uniquename,
  40349. feature.residues,
  40350. feature.seqlen,
  40351. feature.md5checksum,
  40352. feature.type_id,
  40353. feature.is_analysis,
  40354. feature.is_obsolete,
  40355. feature.timeaccessioned,
  40356. feature.timelastmodified
  40357. FROM (feature
  40358. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40359. WHERE (((cvterm.name)::text = 'tiling_path_clone'::text) OR ((cvterm.name)::text = 'tiling_path_fragment'::text));
  40360. --
  40361. -- Name: tmrna; Type: VIEW; Schema: so; Owner: -
  40362. --
  40363. CREATE VIEW tmrna AS
  40364. SELECT feature.feature_id AS tmrna_id,
  40365. feature.feature_id,
  40366. feature.dbxref_id,
  40367. feature.organism_id,
  40368. feature.name,
  40369. feature.uniquename,
  40370. feature.residues,
  40371. feature.seqlen,
  40372. feature.md5checksum,
  40373. feature.type_id,
  40374. feature.is_analysis,
  40375. feature.is_obsolete,
  40376. feature.timeaccessioned,
  40377. feature.timelastmodified
  40378. FROM (feature
  40379. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40380. WHERE ((cvterm.name)::text = 'tmRNA'::text);
  40381. --
  40382. -- Name: tmrna_acceptor_piece; Type: VIEW; Schema: so; Owner: -
  40383. --
  40384. CREATE VIEW tmrna_acceptor_piece AS
  40385. SELECT feature.feature_id AS tmrna_acceptor_piece_id,
  40386. feature.feature_id,
  40387. feature.dbxref_id,
  40388. feature.organism_id,
  40389. feature.name,
  40390. feature.uniquename,
  40391. feature.residues,
  40392. feature.seqlen,
  40393. feature.md5checksum,
  40394. feature.type_id,
  40395. feature.is_analysis,
  40396. feature.is_obsolete,
  40397. feature.timeaccessioned,
  40398. feature.timelastmodified
  40399. FROM (feature
  40400. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40401. WHERE ((cvterm.name)::text = 'tmRNA_acceptor_piece'::text);
  40402. --
  40403. -- Name: tmrna_coding_piece; Type: VIEW; Schema: so; Owner: -
  40404. --
  40405. CREATE VIEW tmrna_coding_piece AS
  40406. SELECT feature.feature_id AS tmrna_coding_piece_id,
  40407. feature.feature_id,
  40408. feature.dbxref_id,
  40409. feature.organism_id,
  40410. feature.name,
  40411. feature.uniquename,
  40412. feature.residues,
  40413. feature.seqlen,
  40414. feature.md5checksum,
  40415. feature.type_id,
  40416. feature.is_analysis,
  40417. feature.is_obsolete,
  40418. feature.timeaccessioned,
  40419. feature.timelastmodified
  40420. FROM (feature
  40421. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40422. WHERE ((cvterm.name)::text = 'tmRNA_coding_piece'::text);
  40423. --
  40424. -- Name: tmrna_encoding; Type: VIEW; Schema: so; Owner: -
  40425. --
  40426. CREATE VIEW tmrna_encoding AS
  40427. SELECT feature.feature_id AS tmrna_encoding_id,
  40428. feature.feature_id,
  40429. feature.dbxref_id,
  40430. feature.organism_id,
  40431. feature.name,
  40432. feature.uniquename,
  40433. feature.residues,
  40434. feature.seqlen,
  40435. feature.md5checksum,
  40436. feature.type_id,
  40437. feature.is_analysis,
  40438. feature.is_obsolete,
  40439. feature.timeaccessioned,
  40440. feature.timelastmodified
  40441. FROM (feature
  40442. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40443. WHERE ((cvterm.name)::text = 'tmRNA_encoding'::text);
  40444. --
  40445. -- Name: tmrna_gene; Type: VIEW; Schema: so; Owner: -
  40446. --
  40447. CREATE VIEW tmrna_gene AS
  40448. SELECT feature.feature_id AS tmrna_gene_id,
  40449. feature.feature_id,
  40450. feature.dbxref_id,
  40451. feature.organism_id,
  40452. feature.name,
  40453. feature.uniquename,
  40454. feature.residues,
  40455. feature.seqlen,
  40456. feature.md5checksum,
  40457. feature.type_id,
  40458. feature.is_analysis,
  40459. feature.is_obsolete,
  40460. feature.timeaccessioned,
  40461. feature.timelastmodified
  40462. FROM (feature
  40463. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40464. WHERE ((cvterm.name)::text = 'tmRNA_gene'::text);
  40465. --
  40466. -- Name: tmrna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  40467. --
  40468. CREATE VIEW tmrna_primary_transcript AS
  40469. SELECT feature.feature_id AS tmrna_primary_transcript_id,
  40470. feature.feature_id,
  40471. feature.dbxref_id,
  40472. feature.organism_id,
  40473. feature.name,
  40474. feature.uniquename,
  40475. feature.residues,
  40476. feature.seqlen,
  40477. feature.md5checksum,
  40478. feature.type_id,
  40479. feature.is_analysis,
  40480. feature.is_obsolete,
  40481. feature.timeaccessioned,
  40482. feature.timelastmodified
  40483. FROM (feature
  40484. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40485. WHERE ((cvterm.name)::text = 'tmRNA_primary_transcript'::text);
  40486. --
  40487. -- Name: tmrna_region; Type: VIEW; Schema: so; Owner: -
  40488. --
  40489. CREATE VIEW tmrna_region AS
  40490. SELECT feature.feature_id AS tmrna_region_id,
  40491. feature.feature_id,
  40492. feature.dbxref_id,
  40493. feature.organism_id,
  40494. feature.name,
  40495. feature.uniquename,
  40496. feature.residues,
  40497. feature.seqlen,
  40498. feature.md5checksum,
  40499. feature.type_id,
  40500. feature.is_analysis,
  40501. feature.is_obsolete,
  40502. feature.timeaccessioned,
  40503. feature.timelastmodified
  40504. FROM (feature
  40505. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40506. WHERE ((((cvterm.name)::text = 'tmRNA_coding_piece'::text) OR ((cvterm.name)::text = 'tmRNA_acceptor_piece'::text)) OR ((cvterm.name)::text = 'tmRNA_region'::text));
  40507. --
  40508. -- Name: tna; Type: VIEW; Schema: so; Owner: -
  40509. --
  40510. CREATE VIEW tna AS
  40511. SELECT feature.feature_id AS tna_id,
  40512. feature.feature_id,
  40513. feature.dbxref_id,
  40514. feature.organism_id,
  40515. feature.name,
  40516. feature.uniquename,
  40517. feature.residues,
  40518. feature.seqlen,
  40519. feature.md5checksum,
  40520. feature.type_id,
  40521. feature.is_analysis,
  40522. feature.is_obsolete,
  40523. feature.timeaccessioned,
  40524. feature.timelastmodified
  40525. FROM (feature
  40526. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40527. WHERE ((cvterm.name)::text = 'TNA'::text);
  40528. --
  40529. -- Name: tna_oligo; Type: VIEW; Schema: so; Owner: -
  40530. --
  40531. CREATE VIEW tna_oligo AS
  40532. SELECT feature.feature_id AS tna_oligo_id,
  40533. feature.feature_id,
  40534. feature.dbxref_id,
  40535. feature.organism_id,
  40536. feature.name,
  40537. feature.uniquename,
  40538. feature.residues,
  40539. feature.seqlen,
  40540. feature.md5checksum,
  40541. feature.type_id,
  40542. feature.is_analysis,
  40543. feature.is_obsolete,
  40544. feature.timeaccessioned,
  40545. feature.timelastmodified
  40546. FROM (feature
  40547. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40548. WHERE ((cvterm.name)::text = 'TNA_oligo'::text);
  40549. --
  40550. -- Name: topologically_defined_region; Type: VIEW; Schema: so; Owner: -
  40551. --
  40552. CREATE VIEW topologically_defined_region AS
  40553. SELECT feature.feature_id AS topologically_defined_region_id,
  40554. feature.feature_id,
  40555. feature.dbxref_id,
  40556. feature.organism_id,
  40557. feature.name,
  40558. feature.uniquename,
  40559. feature.residues,
  40560. feature.seqlen,
  40561. feature.md5checksum,
  40562. feature.type_id,
  40563. feature.is_analysis,
  40564. feature.is_obsolete,
  40565. feature.timeaccessioned,
  40566. feature.timelastmodified
  40567. FROM (feature
  40568. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40569. WHERE (((((((((((((((((((((((((cvterm.name)::text = 'flanking_region'::text) OR ((cvterm.name)::text = 'repeat_component'::text)) OR ((cvterm.name)::text = 'transposable_element_flanking_region'::text)) OR ((cvterm.name)::text = 'five_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'three_prime_flanking_region'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon_polymeric_tract'::text)) OR ((cvterm.name)::text = 'LTR_component'::text)) OR ((cvterm.name)::text = 'repeat_fragment'::text)) OR ((cvterm.name)::text = 'transposon_fragment'::text)) OR ((cvterm.name)::text = 'U5_LTR_region'::text)) OR ((cvterm.name)::text = 'R_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_LTR_region'::text)) OR ((cvterm.name)::text = 'three_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'five_prime_LTR_component'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_three_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'R_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text)) OR ((cvterm.name)::text = 'topologically_defined_region'::text));
  40570. --
  40571. -- Name: topology_attribute; Type: VIEW; Schema: so; Owner: -
  40572. --
  40573. CREATE VIEW topology_attribute AS
  40574. SELECT feature.feature_id AS topology_attribute_id,
  40575. feature.feature_id,
  40576. feature.dbxref_id,
  40577. feature.organism_id,
  40578. feature.name,
  40579. feature.uniquename,
  40580. feature.residues,
  40581. feature.seqlen,
  40582. feature.md5checksum,
  40583. feature.type_id,
  40584. feature.is_analysis,
  40585. feature.is_obsolete,
  40586. feature.timeaccessioned,
  40587. feature.timelastmodified
  40588. FROM (feature
  40589. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40590. WHERE ((((cvterm.name)::text = 'linear'::text) OR ((cvterm.name)::text = 'circular'::text)) OR ((cvterm.name)::text = 'topology_attribute'::text));
  40591. --
  40592. -- Name: trans_splice_acceptor_site; Type: VIEW; Schema: so; Owner: -
  40593. --
  40594. CREATE VIEW trans_splice_acceptor_site AS
  40595. SELECT feature.feature_id AS trans_splice_acceptor_site_id,
  40596. feature.feature_id,
  40597. feature.dbxref_id,
  40598. feature.organism_id,
  40599. feature.name,
  40600. feature.uniquename,
  40601. feature.residues,
  40602. feature.seqlen,
  40603. feature.md5checksum,
  40604. feature.type_id,
  40605. feature.is_analysis,
  40606. feature.is_obsolete,
  40607. feature.timeaccessioned,
  40608. feature.timelastmodified
  40609. FROM (feature
  40610. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40611. WHERE ((((((((((((((cvterm.name)::text = 'SL1_acceptor_site'::text) OR ((cvterm.name)::text = 'SL2_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL3_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL4_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL5_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL6_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL7_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL8_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL9_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL10_accceptor_site'::text)) OR ((cvterm.name)::text = 'SL11_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL12_acceptor_site'::text)) OR ((cvterm.name)::text = 'trans_splice_acceptor_site'::text));
  40612. --
  40613. -- Name: trans_splice_donor_site; Type: VIEW; Schema: so; Owner: -
  40614. --
  40615. CREATE VIEW trans_splice_donor_site AS
  40616. SELECT feature.feature_id AS trans_splice_donor_site_id,
  40617. feature.feature_id,
  40618. feature.dbxref_id,
  40619. feature.organism_id,
  40620. feature.name,
  40621. feature.uniquename,
  40622. feature.residues,
  40623. feature.seqlen,
  40624. feature.md5checksum,
  40625. feature.type_id,
  40626. feature.is_analysis,
  40627. feature.is_obsolete,
  40628. feature.timeaccessioned,
  40629. feature.timelastmodified
  40630. FROM (feature
  40631. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40632. WHERE ((cvterm.name)::text = 'trans_splice_donor_site'::text);
  40633. --
  40634. -- Name: trans_splice_junction; Type: VIEW; Schema: so; Owner: -
  40635. --
  40636. CREATE VIEW trans_splice_junction AS
  40637. SELECT feature.feature_id AS trans_splice_junction_id,
  40638. feature.feature_id,
  40639. feature.dbxref_id,
  40640. feature.organism_id,
  40641. feature.name,
  40642. feature.uniquename,
  40643. feature.residues,
  40644. feature.seqlen,
  40645. feature.md5checksum,
  40646. feature.type_id,
  40647. feature.is_analysis,
  40648. feature.is_obsolete,
  40649. feature.timeaccessioned,
  40650. feature.timelastmodified
  40651. FROM (feature
  40652. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40653. WHERE ((cvterm.name)::text = 'trans_splice_junction'::text);
  40654. --
  40655. -- Name: trans_splice_site; Type: VIEW; Schema: so; Owner: -
  40656. --
  40657. CREATE VIEW trans_splice_site AS
  40658. SELECT feature.feature_id AS trans_splice_site_id,
  40659. feature.feature_id,
  40660. feature.dbxref_id,
  40661. feature.organism_id,
  40662. feature.name,
  40663. feature.uniquename,
  40664. feature.residues,
  40665. feature.seqlen,
  40666. feature.md5checksum,
  40667. feature.type_id,
  40668. feature.is_analysis,
  40669. feature.is_obsolete,
  40670. feature.timeaccessioned,
  40671. feature.timelastmodified
  40672. FROM (feature
  40673. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40674. WHERE ((((((((((((((((cvterm.name)::text = 'trans_splice_acceptor_site'::text) OR ((cvterm.name)::text = 'trans_splice_donor_site'::text)) OR ((cvterm.name)::text = 'SL1_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL2_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL3_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL4_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL5_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL6_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL7_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL8_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL9_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL10_accceptor_site'::text)) OR ((cvterm.name)::text = 'SL11_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL12_acceptor_site'::text)) OR ((cvterm.name)::text = 'trans_splice_site'::text));
  40675. --
  40676. -- Name: trans_spliced; Type: VIEW; Schema: so; Owner: -
  40677. --
  40678. CREATE VIEW trans_spliced AS
  40679. SELECT feature.feature_id AS trans_spliced_id,
  40680. feature.feature_id,
  40681. feature.dbxref_id,
  40682. feature.organism_id,
  40683. feature.name,
  40684. feature.uniquename,
  40685. feature.residues,
  40686. feature.seqlen,
  40687. feature.md5checksum,
  40688. feature.type_id,
  40689. feature.is_analysis,
  40690. feature.is_obsolete,
  40691. feature.timeaccessioned,
  40692. feature.timelastmodified
  40693. FROM (feature
  40694. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40695. WHERE ((cvterm.name)::text = 'trans_spliced'::text);
  40696. --
  40697. -- Name: trans_spliced_mrna; Type: VIEW; Schema: so; Owner: -
  40698. --
  40699. CREATE VIEW trans_spliced_mrna AS
  40700. SELECT feature.feature_id AS trans_spliced_mrna_id,
  40701. feature.feature_id,
  40702. feature.dbxref_id,
  40703. feature.organism_id,
  40704. feature.name,
  40705. feature.uniquename,
  40706. feature.residues,
  40707. feature.seqlen,
  40708. feature.md5checksum,
  40709. feature.type_id,
  40710. feature.is_analysis,
  40711. feature.is_obsolete,
  40712. feature.timeaccessioned,
  40713. feature.timelastmodified
  40714. FROM (feature
  40715. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40716. WHERE ((cvterm.name)::text = 'trans_spliced_mRNA'::text);
  40717. --
  40718. -- Name: trans_spliced_transcript; Type: VIEW; Schema: so; Owner: -
  40719. --
  40720. CREATE VIEW trans_spliced_transcript AS
  40721. SELECT feature.feature_id AS trans_spliced_transcript_id,
  40722. feature.feature_id,
  40723. feature.dbxref_id,
  40724. feature.organism_id,
  40725. feature.name,
  40726. feature.uniquename,
  40727. feature.residues,
  40728. feature.seqlen,
  40729. feature.md5checksum,
  40730. feature.type_id,
  40731. feature.is_analysis,
  40732. feature.is_obsolete,
  40733. feature.timeaccessioned,
  40734. feature.timelastmodified
  40735. FROM (feature
  40736. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40737. WHERE (((cvterm.name)::text = 'trans_spliced_mRNA'::text) OR ((cvterm.name)::text = 'trans_spliced_transcript'::text));
  40738. --
  40739. -- Name: transcribed_cluster; Type: VIEW; Schema: so; Owner: -
  40740. --
  40741. CREATE VIEW transcribed_cluster AS
  40742. SELECT feature.feature_id AS transcribed_cluster_id,
  40743. feature.feature_id,
  40744. feature.dbxref_id,
  40745. feature.organism_id,
  40746. feature.name,
  40747. feature.uniquename,
  40748. feature.residues,
  40749. feature.seqlen,
  40750. feature.md5checksum,
  40751. feature.type_id,
  40752. feature.is_analysis,
  40753. feature.is_obsolete,
  40754. feature.timeaccessioned,
  40755. feature.timelastmodified
  40756. FROM (feature
  40757. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40758. WHERE (((cvterm.name)::text = 'unigene_cluster'::text) OR ((cvterm.name)::text = 'transcribed_cluster'::text));
  40759. --
  40760. -- Name: transcribed_fragment; Type: VIEW; Schema: so; Owner: -
  40761. --
  40762. CREATE VIEW transcribed_fragment AS
  40763. SELECT feature.feature_id AS transcribed_fragment_id,
  40764. feature.feature_id,
  40765. feature.dbxref_id,
  40766. feature.organism_id,
  40767. feature.name,
  40768. feature.uniquename,
  40769. feature.residues,
  40770. feature.seqlen,
  40771. feature.md5checksum,
  40772. feature.type_id,
  40773. feature.is_analysis,
  40774. feature.is_obsolete,
  40775. feature.timeaccessioned,
  40776. feature.timelastmodified
  40777. FROM (feature
  40778. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40779. WHERE ((cvterm.name)::text = 'transcribed_fragment'::text);
  40780. --
  40781. -- Name: transcribed_spacer_region; Type: VIEW; Schema: so; Owner: -
  40782. --
  40783. CREATE VIEW transcribed_spacer_region AS
  40784. SELECT feature.feature_id AS transcribed_spacer_region_id,
  40785. feature.feature_id,
  40786. feature.dbxref_id,
  40787. feature.organism_id,
  40788. feature.name,
  40789. feature.uniquename,
  40790. feature.residues,
  40791. feature.seqlen,
  40792. feature.md5checksum,
  40793. feature.type_id,
  40794. feature.is_analysis,
  40795. feature.is_obsolete,
  40796. feature.timeaccessioned,
  40797. feature.timelastmodified
  40798. FROM (feature
  40799. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40800. WHERE ((((cvterm.name)::text = 'internal_transcribed_spacer_region'::text) OR ((cvterm.name)::text = 'external_transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'transcribed_spacer_region'::text));
  40801. --
  40802. -- Name: transcript; Type: VIEW; Schema: so; Owner: -
  40803. --
  40804. CREATE VIEW transcript AS
  40805. SELECT feature.feature_id AS transcript_id,
  40806. feature.feature_id,
  40807. feature.dbxref_id,
  40808. feature.organism_id,
  40809. feature.name,
  40810. feature.uniquename,
  40811. feature.residues,
  40812. feature.seqlen,
  40813. feature.md5checksum,
  40814. feature.type_id,
  40815. feature.is_analysis,
  40816. feature.is_obsolete,
  40817. feature.timeaccessioned,
  40818. feature.timelastmodified
  40819. FROM (feature
  40820. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40821. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'polycistronic_transcript'::text) OR ((cvterm.name)::text = 'transcript_with_translational_frameshift'::text)) OR ((cvterm.name)::text = 'primary_transcript'::text)) OR ((cvterm.name)::text = 'mature_transcript'::text)) OR ((cvterm.name)::text = 'transcript_bound_by_nucleic_acid'::text)) OR ((cvterm.name)::text = 'transcript_bound_by_protein'::text)) OR ((cvterm.name)::text = 'enzymatic_RNA'::text)) OR ((cvterm.name)::text = 'trans_spliced_transcript'::text)) OR ((cvterm.name)::text = 'monocistronic_transcript'::text)) OR ((cvterm.name)::text = 'aberrant_processed_transcript'::text)) OR ((cvterm.name)::text = 'edited_transcript'::text)) OR ((cvterm.name)::text = 'processed_transcript'::text)) OR ((cvterm.name)::text = 'alternatively_spliced_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'protein_coding_primary_transcript'::text)) OR ((cvterm.name)::text = 'nc_primary_transcript'::text)) OR ((cvterm.name)::text = 'polycistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'monocistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'mini_exon_donor_RNA'::text)) OR ((cvterm.name)::text = 'antisense_primary_transcript'::text)) OR ((cvterm.name)::text = 'capped_primary_transcript'::text)) OR ((cvterm.name)::text = 'pre_edited_mRNA'::text)) OR ((cvterm.name)::text = 'scRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tmRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'SRP_RNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'miRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tasiRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_small_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_large_subunit_primary_transcript'::text)) OR ((cvterm.name)::text = 'alanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'arginine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'asparagine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'aspartic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'cysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glycine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'histidine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'isoleucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'leucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'lysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methionine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'phenylalanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'proline_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'serine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'threonine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tryptophan_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tyrosine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'valine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'pyrrolysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'selenocysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'U14_snoRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'stRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'dicistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'mRNA'::text)) OR ((cvterm.name)::text = 'ncRNA'::text)) OR ((cvterm.name)::text = 'mRNA_with_frameshift'::text)) OR ((cvterm.name)::text = 'monocistronic_mRNA'::text)) OR ((cvterm.name)::text = 'polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'exemplar_mRNA'::text)) OR ((cvterm.name)::text = 'capped_mRNA'::text)) OR ((cvterm.name)::text = 'polyadenylated_mRNA'::text)) OR ((cvterm.name)::text = 'trans_spliced_mRNA'::text)) OR ((cvterm.name)::text = 'edited_mRNA'::text)) OR ((cvterm.name)::text = 'consensus_mRNA'::text)) OR ((cvterm.name)::text = 'recoded_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_plus_2_frameshift'::text)) OR ((cvterm.name)::text = 'mRNA_with_minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'dicistronic_mRNA'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'mRNA_recoded_by_codon_redefinition'::text)) OR ((cvterm.name)::text = 'scRNA'::text)) OR ((cvterm.name)::text = 'rRNA'::text)) OR ((cvterm.name)::text = 'tRNA'::text)) OR ((cvterm.name)::text = 'snRNA'::text)) OR ((cvterm.name)::text = 'snoRNA'::text)) OR ((cvterm.name)::text = 'small_regulatory_ncRNA'::text)) OR ((cvterm.name)::text = 'RNase_MRP_RNA'::text)) OR ((cvterm.name)::text = 'RNase_P_RNA'::text)) OR ((cvterm.name)::text = 'telomerase_RNA'::text)) OR ((cvterm.name)::text = 'vault_RNA'::text)) OR ((cvterm.name)::text = 'Y_RNA'::text)) OR ((cvterm.name)::text = 'rasiRNA'::text)) OR ((cvterm.name)::text = 'SRP_RNA'::text)) OR ((cvterm.name)::text = 'guide_RNA'::text)) OR ((cvterm.name)::text = 'antisense_RNA'::text)) OR ((cvterm.name)::text = 'siRNA'::text)) OR ((cvterm.name)::text = 'stRNA'::text)) OR ((cvterm.name)::text = 'class_II_RNA'::text)) OR ((cvterm.name)::text = 'class_I_RNA'::text)) OR ((cvterm.name)::text = 'piRNA'::text)) OR ((cvterm.name)::text = 'lincRNA'::text)) OR ((cvterm.name)::text = 'tasiRNA'::text)) OR ((cvterm.name)::text = 'rRNA_cleavage_RNA'::text)) OR ((cvterm.name)::text = 'small_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'large_subunit_rRNA'::text)) OR ((cvterm.name)::text = 'rRNA_18S'::text)) OR ((cvterm.name)::text = 'rRNA_16S'::text)) OR ((cvterm.name)::text = 'rRNA_5_8S'::text)) OR ((cvterm.name)::text = 'rRNA_5S'::text)) OR ((cvterm.name)::text = 'rRNA_28S'::text)) OR ((cvterm.name)::text = 'rRNA_23S'::text)) OR ((cvterm.name)::text = 'rRNA_25S'::text)) OR ((cvterm.name)::text = 'rRNA_21S'::text)) OR ((cvterm.name)::text = 'alanyl_tRNA'::text)) OR ((cvterm.name)::text = 'asparaginyl_tRNA'::text)) OR ((cvterm.name)::text = 'aspartyl_tRNA'::text)) OR ((cvterm.name)::text = 'cysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutaminyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutamyl_tRNA'::text)) OR ((cvterm.name)::text = 'glycyl_tRNA'::text)) OR ((cvterm.name)::text = 'histidyl_tRNA'::text)) OR ((cvterm.name)::text = 'isoleucyl_tRNA'::text)) OR ((cvterm.name)::text = 'leucyl_tRNA'::text)) OR ((cvterm.name)::text = 'lysyl_tRNA'::text)) OR ((cvterm.name)::text = 'methionyl_tRNA'::text)) OR ((cvterm.name)::text = 'phenylalanyl_tRNA'::text)) OR ((cvterm.name)::text = 'prolyl_tRNA'::text)) OR ((cvterm.name)::text = 'seryl_tRNA'::text)) OR ((cvterm.name)::text = 'threonyl_tRNA'::text)) OR ((cvterm.name)::text = 'tryptophanyl_tRNA'::text)) OR ((cvterm.name)::text = 'tyrosyl_tRNA'::text)) OR ((cvterm.name)::text = 'valyl_tRNA'::text)) OR ((cvterm.name)::text = 'pyrrolysyl_tRNA'::text)) OR ((cvterm.name)::text = 'arginyl_tRNA'::text)) OR ((cvterm.name)::text = 'selenocysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'U1_snRNA'::text)) OR ((cvterm.name)::text = 'U2_snRNA'::text)) OR ((cvterm.name)::text = 'U4_snRNA'::text)) OR ((cvterm.name)::text = 'U4atac_snRNA'::text)) OR ((cvterm.name)::text = 'U5_snRNA'::text)) OR ((cvterm.name)::text = 'U6_snRNA'::text)) OR ((cvterm.name)::text = 'U6atac_snRNA'::text)) OR ((cvterm.name)::text = 'U11_snRNA'::text)) OR ((cvterm.name)::text = 'U12_snRNA'::text)) OR ((cvterm.name)::text = 'C_D_box_snoRNA'::text)) OR ((cvterm.name)::text = 'H_ACA_box_snoRNA'::text)) OR ((cvterm.name)::text = 'U14_snoRNA'::text)) OR ((cvterm.name)::text = 'U3_snoRNA'::text)) OR ((cvterm.name)::text = 'methylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'pseudouridylation_guide_snoRNA'::text)) OR ((cvterm.name)::text = 'miRNA'::text)) OR ((cvterm.name)::text = 'RNA_6S'::text)) OR ((cvterm.name)::text = 'CsrB_RsmB_RNA'::text)) OR ((cvterm.name)::text = 'DsrA_RNA'::text)) OR ((cvterm.name)::text = 'OxyS_RNA'::text)) OR ((cvterm.name)::text = 'RprA_RNA'::text)) OR ((cvterm.name)::text = 'RRE_RNA'::text)) OR ((cvterm.name)::text = 'spot_42_RNA'::text)) OR ((cvterm.name)::text = 'tmRNA'::text)) OR ((cvterm.name)::text = 'GcvB_RNA'::text)) OR ((cvterm.name)::text = 'MicF_RNA'::text)) OR ((cvterm.name)::text = 'ribozyme'::text)) OR ((cvterm.name)::text = 'trans_spliced_mRNA'::text)) OR ((cvterm.name)::text = 'monocistronic_primary_transcript'::text)) OR ((cvterm.name)::text = 'monocistronic_mRNA'::text)) OR ((cvterm.name)::text = 'edited_transcript_by_A_to_I_substitution'::text)) OR ((cvterm.name)::text = 'edited_mRNA'::text)) OR ((cvterm.name)::text = 'transcript'::text));
  40822. --
  40823. -- Name: transcript_attribute; Type: VIEW; Schema: so; Owner: -
  40824. --
  40825. CREATE VIEW transcript_attribute AS
  40826. SELECT feature.feature_id AS transcript_attribute_id,
  40827. feature.feature_id,
  40828. feature.dbxref_id,
  40829. feature.organism_id,
  40830. feature.name,
  40831. feature.uniquename,
  40832. feature.residues,
  40833. feature.seqlen,
  40834. feature.md5checksum,
  40835. feature.type_id,
  40836. feature.is_analysis,
  40837. feature.is_obsolete,
  40838. feature.timeaccessioned,
  40839. feature.timelastmodified
  40840. FROM (feature
  40841. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40842. WHERE (((((((((((((((((((((((cvterm.name)::text = 'edited'::text) OR ((cvterm.name)::text = 'capped'::text)) OR ((cvterm.name)::text = 'mRNA_attribute'::text)) OR ((cvterm.name)::text = 'trans_spliced'::text)) OR ((cvterm.name)::text = 'alternatively_spliced'::text)) OR ((cvterm.name)::text = 'monocistronic'::text)) OR ((cvterm.name)::text = 'polycistronic'::text)) OR ((cvterm.name)::text = 'polyadenylated'::text)) OR ((cvterm.name)::text = 'exemplar'::text)) OR ((cvterm.name)::text = 'frameshift'::text)) OR ((cvterm.name)::text = 'recoded'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_framshift'::text)) OR ((cvterm.name)::text = 'codon_redefined'::text)) OR ((cvterm.name)::text = 'recoded_by_translational_bypass'::text)) OR ((cvterm.name)::text = 'translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'minus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'plus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'dicistronic'::text)) OR ((cvterm.name)::text = 'transcript_attribute'::text));
  40843. --
  40844. -- Name: transcript_bound_by_nucleic_acid; Type: VIEW; Schema: so; Owner: -
  40845. --
  40846. CREATE VIEW transcript_bound_by_nucleic_acid AS
  40847. SELECT feature.feature_id AS transcript_bound_by_nucleic_acid_id,
  40848. feature.feature_id,
  40849. feature.dbxref_id,
  40850. feature.organism_id,
  40851. feature.name,
  40852. feature.uniquename,
  40853. feature.residues,
  40854. feature.seqlen,
  40855. feature.md5checksum,
  40856. feature.type_id,
  40857. feature.is_analysis,
  40858. feature.is_obsolete,
  40859. feature.timeaccessioned,
  40860. feature.timelastmodified
  40861. FROM (feature
  40862. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40863. WHERE ((cvterm.name)::text = 'transcript_bound_by_nucleic_acid'::text);
  40864. --
  40865. -- Name: transcript_bound_by_protein; Type: VIEW; Schema: so; Owner: -
  40866. --
  40867. CREATE VIEW transcript_bound_by_protein AS
  40868. SELECT feature.feature_id AS transcript_bound_by_protein_id,
  40869. feature.feature_id,
  40870. feature.dbxref_id,
  40871. feature.organism_id,
  40872. feature.name,
  40873. feature.uniquename,
  40874. feature.residues,
  40875. feature.seqlen,
  40876. feature.md5checksum,
  40877. feature.type_id,
  40878. feature.is_analysis,
  40879. feature.is_obsolete,
  40880. feature.timeaccessioned,
  40881. feature.timelastmodified
  40882. FROM (feature
  40883. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40884. WHERE ((cvterm.name)::text = 'transcript_bound_by_protein'::text);
  40885. --
  40886. -- Name: transcript_function_variant; Type: VIEW; Schema: so; Owner: -
  40887. --
  40888. CREATE VIEW transcript_function_variant AS
  40889. SELECT feature.feature_id AS transcript_function_variant_id,
  40890. feature.feature_id,
  40891. feature.dbxref_id,
  40892. feature.organism_id,
  40893. feature.name,
  40894. feature.uniquename,
  40895. feature.residues,
  40896. feature.seqlen,
  40897. feature.md5checksum,
  40898. feature.type_id,
  40899. feature.is_analysis,
  40900. feature.is_obsolete,
  40901. feature.timeaccessioned,
  40902. feature.timelastmodified
  40903. FROM (feature
  40904. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40905. WHERE (((((((((((((((((cvterm.name)::text = 'level_of_transcript_variant'::text) OR ((cvterm.name)::text = 'transcript_processing_variant'::text)) OR ((cvterm.name)::text = 'transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'transcription_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcript_level_variant'::text)) OR ((cvterm.name)::text = 'increased_transcript_level_variant'::text)) OR ((cvterm.name)::text = 'editing_variant'::text)) OR ((cvterm.name)::text = 'polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'increased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'decreased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'increased_transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'rate_of_transcription_variant'::text)) OR ((cvterm.name)::text = 'increased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'transcript_function_variant'::text));
  40906. --
  40907. -- Name: transcript_processing_variant; Type: VIEW; Schema: so; Owner: -
  40908. --
  40909. CREATE VIEW transcript_processing_variant AS
  40910. SELECT feature.feature_id AS transcript_processing_variant_id,
  40911. feature.feature_id,
  40912. feature.dbxref_id,
  40913. feature.organism_id,
  40914. feature.name,
  40915. feature.uniquename,
  40916. feature.residues,
  40917. feature.seqlen,
  40918. feature.md5checksum,
  40919. feature.type_id,
  40920. feature.is_analysis,
  40921. feature.is_obsolete,
  40922. feature.timeaccessioned,
  40923. feature.timelastmodified
  40924. FROM (feature
  40925. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40926. WHERE ((((((cvterm.name)::text = 'editing_variant'::text) OR ((cvterm.name)::text = 'polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'increased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'decreased_polyadenylation_variant'::text)) OR ((cvterm.name)::text = 'transcript_processing_variant'::text));
  40927. --
  40928. -- Name: transcript_region; Type: VIEW; Schema: so; Owner: -
  40929. --
  40930. CREATE VIEW transcript_region AS
  40931. SELECT feature.feature_id AS transcript_region_id,
  40932. feature.feature_id,
  40933. feature.dbxref_id,
  40934. feature.organism_id,
  40935. feature.name,
  40936. feature.uniquename,
  40937. feature.residues,
  40938. feature.seqlen,
  40939. feature.md5checksum,
  40940. feature.type_id,
  40941. feature.is_analysis,
  40942. feature.is_obsolete,
  40943. feature.timeaccessioned,
  40944. feature.timelastmodified
  40945. FROM (feature
  40946. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40947. WHERE ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'exon'::text) OR ((cvterm.name)::text = 'edited_transcript_feature'::text)) OR ((cvterm.name)::text = 'mature_transcript_region'::text)) OR ((cvterm.name)::text = 'primary_transcript_region'::text)) OR ((cvterm.name)::text = 'exon_region'::text)) OR ((cvterm.name)::text = 'anchor_binding_site'::text)) OR ((cvterm.name)::text = 'coding_exon'::text)) OR ((cvterm.name)::text = 'noncoding_exon'::text)) OR ((cvterm.name)::text = 'interior_exon'::text)) OR ((cvterm.name)::text = 'exon_of_single_exon_gene'::text)) OR ((cvterm.name)::text = 'interior_coding_exon'::text)) OR ((cvterm.name)::text = 'five_prime_coding_exon'::text)) OR ((cvterm.name)::text = 'three_prime_coding_exon'::text)) OR ((cvterm.name)::text = 'three_prime_noncoding_exon'::text)) OR ((cvterm.name)::text = 'five_prime_noncoding_exon'::text)) OR ((cvterm.name)::text = 'pre_edited_region'::text)) OR ((cvterm.name)::text = 'editing_block'::text)) OR ((cvterm.name)::text = 'editing_domain'::text)) OR ((cvterm.name)::text = 'unedited_region'::text)) OR ((cvterm.name)::text = 'mRNA_region'::text)) OR ((cvterm.name)::text = 'tmRNA_region'::text)) OR ((cvterm.name)::text = 'guide_RNA_region'::text)) OR ((cvterm.name)::text = 'tRNA_region'::text)) OR ((cvterm.name)::text = 'riboswitch'::text)) OR ((cvterm.name)::text = 'ribosome_entry_site'::text)) OR ((cvterm.name)::text = 'UTR'::text)) OR ((cvterm.name)::text = 'CDS'::text)) OR ((cvterm.name)::text = 'five_prime_open_reading_frame'::text)) OR ((cvterm.name)::text = 'UTR_region'::text)) OR ((cvterm.name)::text = 'CDS_region'::text)) OR ((cvterm.name)::text = 'translational_frameshift'::text)) OR ((cvterm.name)::text = 'recoding_stimulatory_region'::text)) OR ((cvterm.name)::text = 'internal_ribosome_entry_site'::text)) OR ((cvterm.name)::text = 'Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'kozak_sequence'::text)) OR ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'five_prime_UTR'::text)) OR ((cvterm.name)::text = 'three_prime_UTR'::text)) OR ((cvterm.name)::text = 'internal_UTR'::text)) OR ((cvterm.name)::text = 'untranslated_region_polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'edited_CDS'::text)) OR ((cvterm.name)::text = 'CDS_fragment'::text)) OR ((cvterm.name)::text = 'CDS_independently_known'::text)) OR ((cvterm.name)::text = 'CDS_predicted'::text)) OR ((cvterm.name)::text = 'orphan_CDS'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_sequence_similarity_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_domain_match_data'::text)) OR ((cvterm.name)::text = 'CDS_supported_by_EST_or_cDNA_data'::text)) OR ((cvterm.name)::text = 'upstream_AUG_codon'::text)) OR ((cvterm.name)::text = 'AU_rich_element'::text)) OR ((cvterm.name)::text = 'Bruno_response_element'::text)) OR ((cvterm.name)::text = 'iron_responsive_element'::text)) OR ((cvterm.name)::text = 'coding_start'::text)) OR ((cvterm.name)::text = 'coding_end'::text)) OR ((cvterm.name)::text = 'codon'::text)) OR ((cvterm.name)::text = 'recoded_codon'::text)) OR ((cvterm.name)::text = 'start_codon'::text)) OR ((cvterm.name)::text = 'stop_codon'::text)) OR ((cvterm.name)::text = 'stop_codon_read_through'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_pyrrolysine'::text)) OR ((cvterm.name)::text = 'stop_codon_redefined_as_selenocysteine'::text)) OR ((cvterm.name)::text = 'non_canonical_start_codon'::text)) OR ((cvterm.name)::text = 'four_bp_start_codon'::text)) OR ((cvterm.name)::text = 'CTG_start_codon'::text)) OR ((cvterm.name)::text = 'plus_1_translational_frameshift'::text)) OR ((cvterm.name)::text = 'plus_2_translational_frameshift'::text)) OR ((cvterm.name)::text = 'internal_Shine_Dalgarno_sequence'::text)) OR ((cvterm.name)::text = 'SECIS_element'::text)) OR ((cvterm.name)::text = 'three_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'five_prime_recoding_site'::text)) OR ((cvterm.name)::text = 'stop_codon_signal'::text)) OR ((cvterm.name)::text = 'three_prime_stem_loop_structure'::text)) OR ((cvterm.name)::text = 'flanking_three_prime_quadruplet_recoding_signal'::text)) OR ((cvterm.name)::text = 'three_prime_repeat_recoding_signal'::text)) OR ((cvterm.name)::text = 'distant_three_prime_recoding_signal'::text)) OR ((cvterm.name)::text = 'UAG_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UAA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'UGA_stop_codon_signal'::text)) OR ((cvterm.name)::text = 'tmRNA_coding_piece'::text)) OR ((cvterm.name)::text = 'tmRNA_acceptor_piece'::text)) OR ((cvterm.name)::text = 'anchor_region'::text)) OR ((cvterm.name)::text = 'template_region'::text)) OR ((cvterm.name)::text = 'anticodon_loop'::text)) OR ((cvterm.name)::text = 'anticodon'::text)) OR ((cvterm.name)::text = 'CCA_tail'::text)) OR ((cvterm.name)::text = 'DHU_loop'::text)) OR ((cvterm.name)::text = 'T_loop'::text)) OR ((cvterm.name)::text = 'splice_site'::text)) OR ((cvterm.name)::text = 'intron'::text)) OR ((cvterm.name)::text = 'clip'::text)) OR ((cvterm.name)::text = 'TSS'::text)) OR ((cvterm.name)::text = 'transcription_end_site'::text)) OR ((cvterm.name)::text = 'spliced_leader_RNA'::text)) OR ((cvterm.name)::text = 'rRNA_primary_transcript_region'::text)) OR ((cvterm.name)::text = 'spliceosomal_intron_region'::text)) OR ((cvterm.name)::text = 'intron_domain'::text)) OR ((cvterm.name)::text = 'miRNA_primary_transcript_region'::text)) OR ((cvterm.name)::text = 'outron'::text)) OR ((cvterm.name)::text = 'cis_splice_site'::text)) OR ((cvterm.name)::text = 'trans_splice_site'::text)) OR ((cvterm.name)::text = 'cryptic_splice_site'::text)) OR ((cvterm.name)::text = 'five_prime_cis_splice_site'::text)) OR ((cvterm.name)::text = 'three_prime_cis_splice_site'::text)) OR ((cvterm.name)::text = 'recursive_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_five_prime_splice_site'::text)) OR ((cvterm.name)::text = 'canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'non_canonical_three_prime_splice_site'::text)) OR ((cvterm.name)::text = 'trans_splice_acceptor_site'::text)) OR ((cvterm.name)::text = 'trans_splice_donor_site'::text)) OR ((cvterm.name)::text = 'SL1_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL2_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL3_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL4_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL5_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL6_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL7_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL8_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL9_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL10_accceptor_site'::text)) OR ((cvterm.name)::text = 'SL11_acceptor_site'::text)) OR ((cvterm.name)::text = 'SL12_acceptor_site'::text)) OR ((cvterm.name)::text = 'five_prime_intron'::text)) OR ((cvterm.name)::text = 'interior_intron'::text)) OR ((cvterm.name)::text = 'three_prime_intron'::text)) OR ((cvterm.name)::text = 'twintron'::text)) OR ((cvterm.name)::text = 'UTR_intron'::text)) OR ((cvterm.name)::text = 'autocatalytically_spliced_intron'::text)) OR ((cvterm.name)::text = 'spliceosomal_intron'::text)) OR ((cvterm.name)::text = 'mobile_intron'::text)) OR ((cvterm.name)::text = 'endonuclease_spliced_intron'::text)) OR ((cvterm.name)::text = 'five_prime_UTR_intron'::text)) OR ((cvterm.name)::text = 'three_prime_UTR_intron'::text)) OR ((cvterm.name)::text = 'group_I_intron'::text)) OR ((cvterm.name)::text = 'group_II_intron'::text)) OR ((cvterm.name)::text = 'group_III_intron'::text)) OR ((cvterm.name)::text = 'group_IIA_intron'::text)) OR ((cvterm.name)::text = 'group_IIB_intron'::text)) OR ((cvterm.name)::text = 'U2_intron'::text)) OR ((cvterm.name)::text = 'U12_intron'::text)) OR ((cvterm.name)::text = 'archaeal_intron'::text)) OR ((cvterm.name)::text = 'tRNA_intron'::text)) OR ((cvterm.name)::text = 'five_prime_clip'::text)) OR ((cvterm.name)::text = 'three_prime_clip'::text)) OR ((cvterm.name)::text = 'major_TSS'::text)) OR ((cvterm.name)::text = 'minor_TSS'::text)) OR ((cvterm.name)::text = 'transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'internal_transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'external_transcribed_spacer_region'::text)) OR ((cvterm.name)::text = 'intronic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'branch_site'::text)) OR ((cvterm.name)::text = 'polypyrimidine_tract'::text)) OR ((cvterm.name)::text = 'internal_guide_sequence'::text)) OR ((cvterm.name)::text = 'mirtron'::text)) OR ((cvterm.name)::text = 'pre_miRNA'::text)) OR ((cvterm.name)::text = 'miRNA_stem'::text)) OR ((cvterm.name)::text = 'miRNA_loop'::text)) OR ((cvterm.name)::text = 'miRNA_antiguide'::text)) OR ((cvterm.name)::text = 'noncoding_region_of_exon'::text)) OR ((cvterm.name)::text = 'coding_region_of_exon'::text)) OR ((cvterm.name)::text = 'three_prime_coding_exon_noncoding_region'::text)) OR ((cvterm.name)::text = 'five_prime_coding_exon_noncoding_region'::text)) OR ((cvterm.name)::text = 'five_prime_coding_exon_coding_region'::text)) OR ((cvterm.name)::text = 'three_prime_coding_exon_coding_region'::text)) OR ((cvterm.name)::text = 'transcript_region'::text));
  40948. --
  40949. -- Name: transcript_secondary_structure_variant; Type: VIEW; Schema: so; Owner: -
  40950. --
  40951. CREATE VIEW transcript_secondary_structure_variant AS
  40952. SELECT feature.feature_id AS transcript_secondary_structure_variant_id,
  40953. feature.feature_id,
  40954. feature.dbxref_id,
  40955. feature.organism_id,
  40956. feature.name,
  40957. feature.uniquename,
  40958. feature.residues,
  40959. feature.seqlen,
  40960. feature.md5checksum,
  40961. feature.type_id,
  40962. feature.is_analysis,
  40963. feature.is_obsolete,
  40964. feature.timeaccessioned,
  40965. feature.timelastmodified
  40966. FROM (feature
  40967. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40968. WHERE (((cvterm.name)::text = 'compensatory_transcript_secondary_structure_variant'::text) OR ((cvterm.name)::text = 'transcript_secondary_structure_variant'::text));
  40969. --
  40970. -- Name: transcript_stability_variant; Type: VIEW; Schema: so; Owner: -
  40971. --
  40972. CREATE VIEW transcript_stability_variant AS
  40973. SELECT feature.feature_id AS transcript_stability_variant_id,
  40974. feature.feature_id,
  40975. feature.dbxref_id,
  40976. feature.organism_id,
  40977. feature.name,
  40978. feature.uniquename,
  40979. feature.residues,
  40980. feature.seqlen,
  40981. feature.md5checksum,
  40982. feature.type_id,
  40983. feature.is_analysis,
  40984. feature.is_obsolete,
  40985. feature.timeaccessioned,
  40986. feature.timelastmodified
  40987. FROM (feature
  40988. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  40989. WHERE ((((cvterm.name)::text = 'decreased_transcript_stability_variant'::text) OR ((cvterm.name)::text = 'increased_transcript_stability_variant'::text)) OR ((cvterm.name)::text = 'transcript_stability_variant'::text));
  40990. --
  40991. -- Name: transcript_variant; Type: VIEW; Schema: so; Owner: -
  40992. --
  40993. CREATE VIEW transcript_variant AS
  40994. SELECT feature.feature_id AS transcript_variant_id,
  40995. feature.feature_id,
  40996. feature.dbxref_id,
  40997. feature.organism_id,
  40998. feature.name,
  40999. feature.uniquename,
  41000. feature.residues,
  41001. feature.seqlen,
  41002. feature.md5checksum,
  41003. feature.type_id,
  41004. feature.is_analysis,
  41005. feature.is_obsolete,
  41006. feature.timeaccessioned,
  41007. feature.timelastmodified
  41008. FROM (feature
  41009. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41010. WHERE (((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'complex_change_in_transcript'::text) OR ((cvterm.name)::text = 'transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'nc_transcript_variant'::text)) OR ((cvterm.name)::text = 'NMD_transcript_variant'::text)) OR ((cvterm.name)::text = 'UTR_variant'::text)) OR ((cvterm.name)::text = 'intron_variant'::text)) OR ((cvterm.name)::text = 'exon_variant'::text)) OR ((cvterm.name)::text = 'compensatory_transcript_secondary_structure_variant'::text)) OR ((cvterm.name)::text = 'mature_miRNA_variant'::text)) OR ((cvterm.name)::text = '5_prime_UTR_variant'::text)) OR ((cvterm.name)::text = '3_prime_UTR_variant'::text)) OR ((cvterm.name)::text = 'splice_site_variant'::text)) OR ((cvterm.name)::text = 'splice_acceptor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_variant'::text)) OR ((cvterm.name)::text = 'splice_donor_5th_base_variant'::text)) OR ((cvterm.name)::text = 'coding_sequence_variant'::text)) OR ((cvterm.name)::text = 'non_coding_exon_variant'::text)) OR ((cvterm.name)::text = 'codon_variant'::text)) OR ((cvterm.name)::text = 'frameshift_variant'::text)) OR ((cvterm.name)::text = 'inframe_variant'::text)) OR ((cvterm.name)::text = 'initiator_codon_change'::text)) OR ((cvterm.name)::text = 'non_synonymous_codon'::text)) OR ((cvterm.name)::text = 'synonymous_codon'::text)) OR ((cvterm.name)::text = 'terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_gained'::text)) OR ((cvterm.name)::text = 'missense_codon'::text)) OR ((cvterm.name)::text = 'conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'non_conservative_missense_codon'::text)) OR ((cvterm.name)::text = 'terminator_codon_variant'::text)) OR ((cvterm.name)::text = 'incomplete_terminal_codon_variant'::text)) OR ((cvterm.name)::text = 'stop_retained_variant'::text)) OR ((cvterm.name)::text = 'stop_lost'::text)) OR ((cvterm.name)::text = 'frame_restoring_variant'::text)) OR ((cvterm.name)::text = 'minus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'minus_2_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_1_frameshift_variant'::text)) OR ((cvterm.name)::text = 'plus_2_frameshift variant'::text)) OR ((cvterm.name)::text = 'inframe_codon_gain'::text)) OR ((cvterm.name)::text = 'inframe_codon_loss'::text)) OR ((cvterm.name)::text = 'transcript_variant'::text));
  41011. --
  41012. -- Name: transcript_with_translational_frameshift; Type: VIEW; Schema: so; Owner: -
  41013. --
  41014. CREATE VIEW transcript_with_translational_frameshift AS
  41015. SELECT feature.feature_id AS transcript_with_translational_frameshift_id,
  41016. feature.feature_id,
  41017. feature.dbxref_id,
  41018. feature.organism_id,
  41019. feature.name,
  41020. feature.uniquename,
  41021. feature.residues,
  41022. feature.seqlen,
  41023. feature.md5checksum,
  41024. feature.type_id,
  41025. feature.is_analysis,
  41026. feature.is_obsolete,
  41027. feature.timeaccessioned,
  41028. feature.timelastmodified
  41029. FROM (feature
  41030. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41031. WHERE ((cvterm.name)::text = 'transcript_with_translational_frameshift'::text);
  41032. --
  41033. -- Name: transcription_end_site; Type: VIEW; Schema: so; Owner: -
  41034. --
  41035. CREATE VIEW transcription_end_site AS
  41036. SELECT feature.feature_id AS transcription_end_site_id,
  41037. feature.feature_id,
  41038. feature.dbxref_id,
  41039. feature.organism_id,
  41040. feature.name,
  41041. feature.uniquename,
  41042. feature.residues,
  41043. feature.seqlen,
  41044. feature.md5checksum,
  41045. feature.type_id,
  41046. feature.is_analysis,
  41047. feature.is_obsolete,
  41048. feature.timeaccessioned,
  41049. feature.timelastmodified
  41050. FROM (feature
  41051. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41052. WHERE ((cvterm.name)::text = 'transcription_end_site'::text);
  41053. --
  41054. -- Name: transcription_regulatory_region; Type: VIEW; Schema: so; Owner: -
  41055. --
  41056. CREATE VIEW transcription_regulatory_region AS
  41057. SELECT feature.feature_id AS transcription_regulatory_region_id,
  41058. feature.feature_id,
  41059. feature.dbxref_id,
  41060. feature.organism_id,
  41061. feature.name,
  41062. feature.uniquename,
  41063. feature.residues,
  41064. feature.seqlen,
  41065. feature.md5checksum,
  41066. feature.type_id,
  41067. feature.is_analysis,
  41068. feature.is_obsolete,
  41069. feature.timeaccessioned,
  41070. feature.timelastmodified
  41071. FROM (feature
  41072. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41073. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'terminator'::text) OR ((cvterm.name)::text = 'TF_binding_site'::text)) OR ((cvterm.name)::text = 'polyA_signal_sequence'::text)) OR ((cvterm.name)::text = 'gene_group_regulatory_region'::text)) OR ((cvterm.name)::text = 'transcriptional_cis_regulatory_region'::text)) OR ((cvterm.name)::text = 'splicing_regulatory_region'::text)) OR ((cvterm.name)::text = 'cis_regulatory_frameshift_element'::text)) OR ((cvterm.name)::text = 'intronic_regulatory_region'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text)) OR ((cvterm.name)::text = 'eukaryotic_terminator'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'terminator_of_type_2_RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'operator'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_terminator'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'rho_dependent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'rho_independent_bacterial_terminator'::text)) OR ((cvterm.name)::text = 'promoter'::text)) OR ((cvterm.name)::text = 'insulator'::text)) OR ((cvterm.name)::text = 'CRM'::text)) OR ((cvterm.name)::text = 'promoter_targeting_sequence'::text)) OR ((cvterm.name)::text = 'ISRE'::text)) OR ((cvterm.name)::text = 'bidirectional_promoter'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_I_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'Phage_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_core_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'locus_control_region'::text)) OR ((cvterm.name)::text = 'enhancer'::text)) OR ((cvterm.name)::text = 'silencer'::text)) OR ((cvterm.name)::text = 'enhancer_bound_by_factor'::text)) OR ((cvterm.name)::text = 'shadow_enhancer'::text)) OR ((cvterm.name)::text = 'splice_enhancer'::text)) OR ((cvterm.name)::text = 'intronic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'exonic_splice_enhancer'::text)) OR ((cvterm.name)::text = 'transcription_regulatory_region'::text));
  41074. --
  41075. -- Name: transcription_variant; Type: VIEW; Schema: so; Owner: -
  41076. --
  41077. CREATE VIEW transcription_variant AS
  41078. SELECT feature.feature_id AS transcription_variant_id,
  41079. feature.feature_id,
  41080. feature.dbxref_id,
  41081. feature.organism_id,
  41082. feature.name,
  41083. feature.uniquename,
  41084. feature.residues,
  41085. feature.seqlen,
  41086. feature.md5checksum,
  41087. feature.type_id,
  41088. feature.is_analysis,
  41089. feature.is_obsolete,
  41090. feature.timeaccessioned,
  41091. feature.timelastmodified
  41092. FROM (feature
  41093. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41094. WHERE (((((cvterm.name)::text = 'rate_of_transcription_variant'::text) OR ((cvterm.name)::text = 'increased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'decreased_transcription_rate_variant'::text)) OR ((cvterm.name)::text = 'transcription_variant'::text));
  41095. --
  41096. -- Name: transcriptional_cis_regulatory_region; Type: VIEW; Schema: so; Owner: -
  41097. --
  41098. CREATE VIEW transcriptional_cis_regulatory_region AS
  41099. SELECT feature.feature_id AS transcriptional_cis_regulatory_region_id,
  41100. feature.feature_id,
  41101. feature.dbxref_id,
  41102. feature.organism_id,
  41103. feature.name,
  41104. feature.uniquename,
  41105. feature.residues,
  41106. feature.seqlen,
  41107. feature.md5checksum,
  41108. feature.type_id,
  41109. feature.is_analysis,
  41110. feature.is_obsolete,
  41111. feature.timeaccessioned,
  41112. feature.timelastmodified
  41113. FROM (feature
  41114. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41115. WHERE ((((((((((((((((((((((((((((cvterm.name)::text = 'promoter'::text) OR ((cvterm.name)::text = 'insulator'::text)) OR ((cvterm.name)::text = 'CRM'::text)) OR ((cvterm.name)::text = 'promoter_targeting_sequence'::text)) OR ((cvterm.name)::text = 'ISRE'::text)) OR ((cvterm.name)::text = 'bidirectional_promoter'::text)) OR ((cvterm.name)::text = 'RNA_polymerase_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_I_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter'::text)) OR ((cvterm.name)::text = 'Phage_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'RNApol_II_core_promoter'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_1'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_2'::text)) OR ((cvterm.name)::text = 'RNApol_III_promoter_type_3'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma_70'::text)) OR ((cvterm.name)::text = 'bacterial_RNApol_promoter_sigma54'::text)) OR ((cvterm.name)::text = 'SP6_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T3_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'T7_RNA_Polymerase_Promoter'::text)) OR ((cvterm.name)::text = 'locus_control_region'::text)) OR ((cvterm.name)::text = 'enhancer'::text)) OR ((cvterm.name)::text = 'silencer'::text)) OR ((cvterm.name)::text = 'enhancer_bound_by_factor'::text)) OR ((cvterm.name)::text = 'shadow_enhancer'::text)) OR ((cvterm.name)::text = 'transcriptional_cis_regulatory_region'::text));
  41116. --
  41117. -- Name: transcriptionally_constitutive; Type: VIEW; Schema: so; Owner: -
  41118. --
  41119. CREATE VIEW transcriptionally_constitutive AS
  41120. SELECT feature.feature_id AS transcriptionally_constitutive_id,
  41121. feature.feature_id,
  41122. feature.dbxref_id,
  41123. feature.organism_id,
  41124. feature.name,
  41125. feature.uniquename,
  41126. feature.residues,
  41127. feature.seqlen,
  41128. feature.md5checksum,
  41129. feature.type_id,
  41130. feature.is_analysis,
  41131. feature.is_obsolete,
  41132. feature.timeaccessioned,
  41133. feature.timelastmodified
  41134. FROM (feature
  41135. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41136. WHERE ((cvterm.name)::text = 'transcriptionally_constitutive'::text);
  41137. --
  41138. -- Name: transcriptionally_induced; Type: VIEW; Schema: so; Owner: -
  41139. --
  41140. CREATE VIEW transcriptionally_induced AS
  41141. SELECT feature.feature_id AS transcriptionally_induced_id,
  41142. feature.feature_id,
  41143. feature.dbxref_id,
  41144. feature.organism_id,
  41145. feature.name,
  41146. feature.uniquename,
  41147. feature.residues,
  41148. feature.seqlen,
  41149. feature.md5checksum,
  41150. feature.type_id,
  41151. feature.is_analysis,
  41152. feature.is_obsolete,
  41153. feature.timeaccessioned,
  41154. feature.timelastmodified
  41155. FROM (feature
  41156. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41157. WHERE (((cvterm.name)::text = 'positively_autoregulated'::text) OR ((cvterm.name)::text = 'transcriptionally_induced'::text));
  41158. --
  41159. -- Name: transcriptionally_regulated; Type: VIEW; Schema: so; Owner: -
  41160. --
  41161. CREATE VIEW transcriptionally_regulated AS
  41162. SELECT feature.feature_id AS transcriptionally_regulated_id,
  41163. feature.feature_id,
  41164. feature.dbxref_id,
  41165. feature.organism_id,
  41166. feature.name,
  41167. feature.uniquename,
  41168. feature.residues,
  41169. feature.seqlen,
  41170. feature.md5checksum,
  41171. feature.type_id,
  41172. feature.is_analysis,
  41173. feature.is_obsolete,
  41174. feature.timeaccessioned,
  41175. feature.timelastmodified
  41176. FROM (feature
  41177. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41178. WHERE (((((((((((((((((cvterm.name)::text = 'transcriptionally_constitutive'::text) OR ((cvterm.name)::text = 'transcriptionally_induced'::text)) OR ((cvterm.name)::text = 'transcriptionally_repressed'::text)) OR ((cvterm.name)::text = 'autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'silenced'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'negatively_autoregulated'::text)) OR ((cvterm.name)::text = 'positively_autoregulated'::text)) OR ((cvterm.name)::text = 'transcriptionally_regulated'::text));
  41179. --
  41180. -- Name: transcriptionally_repressed; Type: VIEW; Schema: so; Owner: -
  41181. --
  41182. CREATE VIEW transcriptionally_repressed AS
  41183. SELECT feature.feature_id AS transcriptionally_repressed_id,
  41184. feature.feature_id,
  41185. feature.dbxref_id,
  41186. feature.organism_id,
  41187. feature.name,
  41188. feature.uniquename,
  41189. feature.residues,
  41190. feature.seqlen,
  41191. feature.md5checksum,
  41192. feature.type_id,
  41193. feature.is_analysis,
  41194. feature.is_obsolete,
  41195. feature.timeaccessioned,
  41196. feature.timelastmodified
  41197. FROM (feature
  41198. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41199. WHERE ((((((((((cvterm.name)::text = 'negatively_autoregulated'::text) OR ((cvterm.name)::text = 'silenced'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_RNA_interference'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_modification'::text)) OR ((cvterm.name)::text = 'silenced_by_DNA_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_methylation'::text)) OR ((cvterm.name)::text = 'silenced_by_histone_deacetylation'::text)) OR ((cvterm.name)::text = 'transcriptionally_repressed'::text));
  41200. --
  41201. -- Name: transgene; Type: VIEW; Schema: so; Owner: -
  41202. --
  41203. CREATE VIEW transgene AS
  41204. SELECT feature.feature_id AS transgene_id,
  41205. feature.feature_id,
  41206. feature.dbxref_id,
  41207. feature.organism_id,
  41208. feature.name,
  41209. feature.uniquename,
  41210. feature.residues,
  41211. feature.seqlen,
  41212. feature.md5checksum,
  41213. feature.type_id,
  41214. feature.is_analysis,
  41215. feature.is_obsolete,
  41216. feature.timeaccessioned,
  41217. feature.timelastmodified
  41218. FROM (feature
  41219. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41220. WHERE (((cvterm.name)::text = 'floxed_gene'::text) OR ((cvterm.name)::text = 'transgene'::text));
  41221. --
  41222. -- Name: transgenic; Type: VIEW; Schema: so; Owner: -
  41223. --
  41224. CREATE VIEW transgenic AS
  41225. SELECT feature.feature_id AS transgenic_id,
  41226. feature.feature_id,
  41227. feature.dbxref_id,
  41228. feature.organism_id,
  41229. feature.name,
  41230. feature.uniquename,
  41231. feature.residues,
  41232. feature.seqlen,
  41233. feature.md5checksum,
  41234. feature.type_id,
  41235. feature.is_analysis,
  41236. feature.is_obsolete,
  41237. feature.timeaccessioned,
  41238. feature.timelastmodified
  41239. FROM (feature
  41240. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41241. WHERE ((cvterm.name)::text = 'transgenic'::text);
  41242. --
  41243. -- Name: transgenic_insertion; Type: VIEW; Schema: so; Owner: -
  41244. --
  41245. CREATE VIEW transgenic_insertion AS
  41246. SELECT feature.feature_id AS transgenic_insertion_id,
  41247. feature.feature_id,
  41248. feature.dbxref_id,
  41249. feature.organism_id,
  41250. feature.name,
  41251. feature.uniquename,
  41252. feature.residues,
  41253. feature.seqlen,
  41254. feature.md5checksum,
  41255. feature.type_id,
  41256. feature.is_analysis,
  41257. feature.is_obsolete,
  41258. feature.timeaccessioned,
  41259. feature.timelastmodified
  41260. FROM (feature
  41261. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41262. WHERE ((cvterm.name)::text = 'transgenic_insertion'::text);
  41263. --
  41264. -- Name: transgenic_transposable_element; Type: VIEW; Schema: so; Owner: -
  41265. --
  41266. CREATE VIEW transgenic_transposable_element AS
  41267. SELECT feature.feature_id AS transgenic_transposable_element_id,
  41268. feature.feature_id,
  41269. feature.dbxref_id,
  41270. feature.organism_id,
  41271. feature.name,
  41272. feature.uniquename,
  41273. feature.residues,
  41274. feature.seqlen,
  41275. feature.md5checksum,
  41276. feature.type_id,
  41277. feature.is_analysis,
  41278. feature.is_obsolete,
  41279. feature.timeaccessioned,
  41280. feature.timelastmodified
  41281. FROM (feature
  41282. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41283. WHERE ((cvterm.name)::text = 'transgenic_transposable_element'::text);
  41284. --
  41285. -- Name: transit_peptide; Type: VIEW; Schema: so; Owner: -
  41286. --
  41287. CREATE VIEW transit_peptide AS
  41288. SELECT feature.feature_id AS transit_peptide_id,
  41289. feature.feature_id,
  41290. feature.dbxref_id,
  41291. feature.organism_id,
  41292. feature.name,
  41293. feature.uniquename,
  41294. feature.residues,
  41295. feature.seqlen,
  41296. feature.md5checksum,
  41297. feature.type_id,
  41298. feature.is_analysis,
  41299. feature.is_obsolete,
  41300. feature.timeaccessioned,
  41301. feature.timelastmodified
  41302. FROM (feature
  41303. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41304. WHERE ((cvterm.name)::text = 'transit_peptide'::text);
  41305. --
  41306. -- Name: transition; Type: VIEW; Schema: so; Owner: -
  41307. --
  41308. CREATE VIEW transition AS
  41309. SELECT feature.feature_id AS transition_id,
  41310. feature.feature_id,
  41311. feature.dbxref_id,
  41312. feature.organism_id,
  41313. feature.name,
  41314. feature.uniquename,
  41315. feature.residues,
  41316. feature.seqlen,
  41317. feature.md5checksum,
  41318. feature.type_id,
  41319. feature.is_analysis,
  41320. feature.is_obsolete,
  41321. feature.timeaccessioned,
  41322. feature.timelastmodified
  41323. FROM (feature
  41324. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41325. WHERE (((((((((cvterm.name)::text = 'pyrimidine_transition'::text) OR ((cvterm.name)::text = 'purine_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition'::text)) OR ((cvterm.name)::text = 'T_to_C_transition'::text)) OR ((cvterm.name)::text = 'C_to_T_transition_at_pCpG_site'::text)) OR ((cvterm.name)::text = 'A_to_G_transition'::text)) OR ((cvterm.name)::text = 'G_to_A_transition'::text)) OR ((cvterm.name)::text = 'transition'::text));
  41326. --
  41327. -- Name: translated_nucleotide_match; Type: VIEW; Schema: so; Owner: -
  41328. --
  41329. CREATE VIEW translated_nucleotide_match AS
  41330. SELECT feature.feature_id AS translated_nucleotide_match_id,
  41331. feature.feature_id,
  41332. feature.dbxref_id,
  41333. feature.organism_id,
  41334. feature.name,
  41335. feature.uniquename,
  41336. feature.residues,
  41337. feature.seqlen,
  41338. feature.md5checksum,
  41339. feature.type_id,
  41340. feature.is_analysis,
  41341. feature.is_obsolete,
  41342. feature.timeaccessioned,
  41343. feature.timelastmodified
  41344. FROM (feature
  41345. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41346. WHERE ((cvterm.name)::text = 'translated_nucleotide_match'::text);
  41347. --
  41348. -- Name: translation_regulatory_region; Type: VIEW; Schema: so; Owner: -
  41349. --
  41350. CREATE VIEW translation_regulatory_region AS
  41351. SELECT feature.feature_id AS translation_regulatory_region_id,
  41352. feature.feature_id,
  41353. feature.dbxref_id,
  41354. feature.organism_id,
  41355. feature.name,
  41356. feature.uniquename,
  41357. feature.residues,
  41358. feature.seqlen,
  41359. feature.md5checksum,
  41360. feature.type_id,
  41361. feature.is_analysis,
  41362. feature.is_obsolete,
  41363. feature.timeaccessioned,
  41364. feature.timelastmodified
  41365. FROM (feature
  41366. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41367. WHERE (((cvterm.name)::text = 'attenuator'::text) OR ((cvterm.name)::text = 'translation_regulatory_region'::text));
  41368. --
  41369. -- Name: translational_frameshift; Type: VIEW; Schema: so; Owner: -
  41370. --
  41371. CREATE VIEW translational_frameshift AS
  41372. SELECT feature.feature_id AS translational_frameshift_id,
  41373. feature.feature_id,
  41374. feature.dbxref_id,
  41375. feature.organism_id,
  41376. feature.name,
  41377. feature.uniquename,
  41378. feature.residues,
  41379. feature.seqlen,
  41380. feature.md5checksum,
  41381. feature.type_id,
  41382. feature.is_analysis,
  41383. feature.is_obsolete,
  41384. feature.timeaccessioned,
  41385. feature.timelastmodified
  41386. FROM (feature
  41387. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41388. WHERE ((((cvterm.name)::text = 'plus_1_translational_frameshift'::text) OR ((cvterm.name)::text = 'plus_2_translational_frameshift'::text)) OR ((cvterm.name)::text = 'translational_frameshift'::text));
  41389. --
  41390. -- Name: translational_product_function_variant; Type: VIEW; Schema: so; Owner: -
  41391. --
  41392. CREATE VIEW translational_product_function_variant AS
  41393. SELECT feature.feature_id AS translational_product_function_variant_id,
  41394. feature.feature_id,
  41395. feature.dbxref_id,
  41396. feature.organism_id,
  41397. feature.name,
  41398. feature.uniquename,
  41399. feature.residues,
  41400. feature.seqlen,
  41401. feature.md5checksum,
  41402. feature.type_id,
  41403. feature.is_analysis,
  41404. feature.is_obsolete,
  41405. feature.timeaccessioned,
  41406. feature.timelastmodified
  41407. FROM (feature
  41408. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41409. WHERE (((((((((((((cvterm.name)::text = 'translational_product_level_variant'::text) OR ((cvterm.name)::text = 'polypeptide_function_variant'::text)) OR ((cvterm.name)::text = 'decreased_translational_product_level'::text)) OR ((cvterm.name)::text = 'increased_translational_product_level'::text)) OR ((cvterm.name)::text = 'polypeptide_gain_of_function_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_localization_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_loss_of_function_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_post_translational_processing_variant'::text)) OR ((cvterm.name)::text = 'inactive_ligand_binding_site'::text)) OR ((cvterm.name)::text = 'polypeptide_partial_loss_of_function'::text)) OR ((cvterm.name)::text = 'inactive_catalytic_site'::text)) OR ((cvterm.name)::text = 'translational_product_function_variant'::text));
  41410. --
  41411. -- Name: translational_product_level_variant; Type: VIEW; Schema: so; Owner: -
  41412. --
  41413. CREATE VIEW translational_product_level_variant AS
  41414. SELECT feature.feature_id AS translational_product_level_variant_id,
  41415. feature.feature_id,
  41416. feature.dbxref_id,
  41417. feature.organism_id,
  41418. feature.name,
  41419. feature.uniquename,
  41420. feature.residues,
  41421. feature.seqlen,
  41422. feature.md5checksum,
  41423. feature.type_id,
  41424. feature.is_analysis,
  41425. feature.is_obsolete,
  41426. feature.timeaccessioned,
  41427. feature.timelastmodified
  41428. FROM (feature
  41429. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41430. WHERE ((((cvterm.name)::text = 'decreased_translational_product_level'::text) OR ((cvterm.name)::text = 'increased_translational_product_level'::text)) OR ((cvterm.name)::text = 'translational_product_level_variant'::text));
  41431. --
  41432. -- Name: translational_product_structure_variant; Type: VIEW; Schema: so; Owner: -
  41433. --
  41434. CREATE VIEW translational_product_structure_variant AS
  41435. SELECT feature.feature_id AS translational_product_structure_variant_id,
  41436. feature.feature_id,
  41437. feature.dbxref_id,
  41438. feature.organism_id,
  41439. feature.name,
  41440. feature.uniquename,
  41441. feature.residues,
  41442. feature.seqlen,
  41443. feature.md5checksum,
  41444. feature.type_id,
  41445. feature.is_analysis,
  41446. feature.is_obsolete,
  41447. feature.timeaccessioned,
  41448. feature.timelastmodified
  41449. FROM (feature
  41450. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41451. WHERE (((((((((((((((((((((cvterm.name)::text = '3D_polypeptide_structure_variant'::text) OR ((cvterm.name)::text = 'complex_change_of_translational_product_variant'::text)) OR ((cvterm.name)::text = 'polypeptide_sequence_variant'::text)) OR ((cvterm.name)::text = 'complex_3D_structural_variant'::text)) OR ((cvterm.name)::text = 'conformational_change_variant'::text)) OR ((cvterm.name)::text = 'amino_acid_deletion'::text)) OR ((cvterm.name)::text = 'amino_acid_insertion'::text)) OR ((cvterm.name)::text = 'amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide'::text)) OR ((cvterm.name)::text = 'polypeptide_fusion'::text)) OR ((cvterm.name)::text = 'polypeptide_truncation'::text)) OR ((cvterm.name)::text = 'conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'non_conservative_amino_acid_substitution'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_C_terminal'::text)) OR ((cvterm.name)::text = 'elongated_in_frame_polypeptide_N_terminal_elongation'::text)) OR ((cvterm.name)::text = 'elongated_out_of_frame_polypeptide_N_terminal'::text)) OR ((cvterm.name)::text = 'translational_product_structure_variant'::text));
  41452. --
  41453. -- Name: translationally_frameshifted; Type: VIEW; Schema: so; Owner: -
  41454. --
  41455. CREATE VIEW translationally_frameshifted AS
  41456. SELECT feature.feature_id AS translationally_frameshifted_id,
  41457. feature.feature_id,
  41458. feature.dbxref_id,
  41459. feature.organism_id,
  41460. feature.name,
  41461. feature.uniquename,
  41462. feature.residues,
  41463. feature.seqlen,
  41464. feature.md5checksum,
  41465. feature.type_id,
  41466. feature.is_analysis,
  41467. feature.is_obsolete,
  41468. feature.timeaccessioned,
  41469. feature.timelastmodified
  41470. FROM (feature
  41471. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41472. WHERE ((((cvterm.name)::text = 'minus_1_translationally_frameshifted'::text) OR ((cvterm.name)::text = 'plus_1_translationally_frameshifted'::text)) OR ((cvterm.name)::text = 'translationally_frameshifted'::text));
  41473. --
  41474. -- Name: translationally_regulated; Type: VIEW; Schema: so; Owner: -
  41475. --
  41476. CREATE VIEW translationally_regulated AS
  41477. SELECT feature.feature_id AS translationally_regulated_id,
  41478. feature.feature_id,
  41479. feature.dbxref_id,
  41480. feature.organism_id,
  41481. feature.name,
  41482. feature.uniquename,
  41483. feature.residues,
  41484. feature.seqlen,
  41485. feature.md5checksum,
  41486. feature.type_id,
  41487. feature.is_analysis,
  41488. feature.is_obsolete,
  41489. feature.timeaccessioned,
  41490. feature.timelastmodified
  41491. FROM (feature
  41492. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41493. WHERE ((cvterm.name)::text = 'translationally_regulated'::text);
  41494. --
  41495. -- Name: translationally_regulated_gene; Type: VIEW; Schema: so; Owner: -
  41496. --
  41497. CREATE VIEW translationally_regulated_gene AS
  41498. SELECT feature.feature_id AS translationally_regulated_gene_id,
  41499. feature.feature_id,
  41500. feature.dbxref_id,
  41501. feature.organism_id,
  41502. feature.name,
  41503. feature.uniquename,
  41504. feature.residues,
  41505. feature.seqlen,
  41506. feature.md5checksum,
  41507. feature.type_id,
  41508. feature.is_analysis,
  41509. feature.is_obsolete,
  41510. feature.timeaccessioned,
  41511. feature.timelastmodified
  41512. FROM (feature
  41513. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41514. WHERE ((cvterm.name)::text = 'translationally_regulated_gene'::text);
  41515. --
  41516. -- Name: translocation; Type: VIEW; Schema: so; Owner: -
  41517. --
  41518. CREATE VIEW translocation AS
  41519. SELECT feature.feature_id AS translocation_id,
  41520. feature.feature_id,
  41521. feature.dbxref_id,
  41522. feature.organism_id,
  41523. feature.name,
  41524. feature.uniquename,
  41525. feature.residues,
  41526. feature.seqlen,
  41527. feature.md5checksum,
  41528. feature.type_id,
  41529. feature.is_analysis,
  41530. feature.is_obsolete,
  41531. feature.timeaccessioned,
  41532. feature.timelastmodified
  41533. FROM (feature
  41534. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41535. WHERE ((cvterm.name)::text = 'translocation'::text);
  41536. --
  41537. -- Name: translocation_breakpoint; Type: VIEW; Schema: so; Owner: -
  41538. --
  41539. CREATE VIEW translocation_breakpoint AS
  41540. SELECT feature.feature_id AS translocation_breakpoint_id,
  41541. feature.feature_id,
  41542. feature.dbxref_id,
  41543. feature.organism_id,
  41544. feature.name,
  41545. feature.uniquename,
  41546. feature.residues,
  41547. feature.seqlen,
  41548. feature.md5checksum,
  41549. feature.type_id,
  41550. feature.is_analysis,
  41551. feature.is_obsolete,
  41552. feature.timeaccessioned,
  41553. feature.timelastmodified
  41554. FROM (feature
  41555. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41556. WHERE ((cvterm.name)::text = 'translocation_breakpoint'::text);
  41557. --
  41558. -- Name: translocation_element; Type: VIEW; Schema: so; Owner: -
  41559. --
  41560. CREATE VIEW translocation_element AS
  41561. SELECT feature.feature_id AS translocation_element_id,
  41562. feature.feature_id,
  41563. feature.dbxref_id,
  41564. feature.organism_id,
  41565. feature.name,
  41566. feature.uniquename,
  41567. feature.residues,
  41568. feature.seqlen,
  41569. feature.md5checksum,
  41570. feature.type_id,
  41571. feature.is_analysis,
  41572. feature.is_obsolete,
  41573. feature.timeaccessioned,
  41574. feature.timelastmodified
  41575. FROM (feature
  41576. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41577. WHERE ((cvterm.name)::text = 'translocation_element'::text);
  41578. --
  41579. -- Name: translocaton_attribute; Type: VIEW; Schema: so; Owner: -
  41580. --
  41581. CREATE VIEW translocaton_attribute AS
  41582. SELECT feature.feature_id AS translocaton_attribute_id,
  41583. feature.feature_id,
  41584. feature.dbxref_id,
  41585. feature.organism_id,
  41586. feature.name,
  41587. feature.uniquename,
  41588. feature.residues,
  41589. feature.seqlen,
  41590. feature.md5checksum,
  41591. feature.type_id,
  41592. feature.is_analysis,
  41593. feature.is_obsolete,
  41594. feature.timeaccessioned,
  41595. feature.timelastmodified
  41596. FROM (feature
  41597. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41598. WHERE ((((cvterm.name)::text = 'reciprocal'::text) OR ((cvterm.name)::text = 'insertional'::text)) OR ((cvterm.name)::text = 'translocaton_attribute'::text));
  41599. --
  41600. -- Name: transmembrane_polypeptide_region; Type: VIEW; Schema: so; Owner: -
  41601. --
  41602. CREATE VIEW transmembrane_polypeptide_region AS
  41603. SELECT feature.feature_id AS transmembrane_polypeptide_region_id,
  41604. feature.feature_id,
  41605. feature.dbxref_id,
  41606. feature.organism_id,
  41607. feature.name,
  41608. feature.uniquename,
  41609. feature.residues,
  41610. feature.seqlen,
  41611. feature.md5checksum,
  41612. feature.type_id,
  41613. feature.is_analysis,
  41614. feature.is_obsolete,
  41615. feature.timeaccessioned,
  41616. feature.timelastmodified
  41617. FROM (feature
  41618. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41619. WHERE ((cvterm.name)::text = 'transmembrane_polypeptide_region'::text);
  41620. --
  41621. -- Name: transposable_element; Type: VIEW; Schema: so; Owner: -
  41622. --
  41623. CREATE VIEW transposable_element AS
  41624. SELECT feature.feature_id AS transposable_element_id,
  41625. feature.feature_id,
  41626. feature.dbxref_id,
  41627. feature.organism_id,
  41628. feature.name,
  41629. feature.uniquename,
  41630. feature.residues,
  41631. feature.seqlen,
  41632. feature.md5checksum,
  41633. feature.type_id,
  41634. feature.is_analysis,
  41635. feature.is_obsolete,
  41636. feature.timeaccessioned,
  41637. feature.timelastmodified
  41638. FROM (feature
  41639. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41640. WHERE (((((((((((((((((((((((cvterm.name)::text = 'retrotransposon'::text) OR ((cvterm.name)::text = 'DNA_transposon'::text)) OR ((cvterm.name)::text = 'foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'transgenic_transposable_element'::text)) OR ((cvterm.name)::text = 'natural_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_transposable_element'::text)) OR ((cvterm.name)::text = 'nested_transposon'::text)) OR ((cvterm.name)::text = 'LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'non_LTR_retrotransposon'::text)) OR ((cvterm.name)::text = 'LINE_element'::text)) OR ((cvterm.name)::text = 'SINE_element'::text)) OR ((cvterm.name)::text = 'terminal_inverted_repeat_element'::text)) OR ((cvterm.name)::text = 'foldback_element'::text)) OR ((cvterm.name)::text = 'conjugative_transposon'::text)) OR ((cvterm.name)::text = 'helitron'::text)) OR ((cvterm.name)::text = 'p_element'::text)) OR ((cvterm.name)::text = 'MITE'::text)) OR ((cvterm.name)::text = 'insertion_sequence'::text)) OR ((cvterm.name)::text = 'polinton'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'engineered_foreign_transposable_element'::text)) OR ((cvterm.name)::text = 'transposable_element'::text));
  41641. --
  41642. -- Name: transposable_element_flanking_region; Type: VIEW; Schema: so; Owner: -
  41643. --
  41644. CREATE VIEW transposable_element_flanking_region AS
  41645. SELECT feature.feature_id AS transposable_element_flanking_region_id,
  41646. feature.feature_id,
  41647. feature.dbxref_id,
  41648. feature.organism_id,
  41649. feature.name,
  41650. feature.uniquename,
  41651. feature.residues,
  41652. feature.seqlen,
  41653. feature.md5checksum,
  41654. feature.type_id,
  41655. feature.is_analysis,
  41656. feature.is_obsolete,
  41657. feature.timeaccessioned,
  41658. feature.timelastmodified
  41659. FROM (feature
  41660. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41661. WHERE ((cvterm.name)::text = 'transposable_element_flanking_region'::text);
  41662. --
  41663. -- Name: transposable_element_gene; Type: VIEW; Schema: so; Owner: -
  41664. --
  41665. CREATE VIEW transposable_element_gene AS
  41666. SELECT feature.feature_id AS transposable_element_gene_id,
  41667. feature.feature_id,
  41668. feature.dbxref_id,
  41669. feature.organism_id,
  41670. feature.name,
  41671. feature.uniquename,
  41672. feature.residues,
  41673. feature.seqlen,
  41674. feature.md5checksum,
  41675. feature.type_id,
  41676. feature.is_analysis,
  41677. feature.is_obsolete,
  41678. feature.timeaccessioned,
  41679. feature.timelastmodified
  41680. FROM (feature
  41681. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41682. WHERE (((cvterm.name)::text = 'engineered_foreign_transposable_element_gene'::text) OR ((cvterm.name)::text = 'transposable_element_gene'::text));
  41683. --
  41684. -- Name: transposable_element_insertion_site; Type: VIEW; Schema: so; Owner: -
  41685. --
  41686. CREATE VIEW transposable_element_insertion_site AS
  41687. SELECT feature.feature_id AS transposable_element_insertion_site_id,
  41688. feature.feature_id,
  41689. feature.dbxref_id,
  41690. feature.organism_id,
  41691. feature.name,
  41692. feature.uniquename,
  41693. feature.residues,
  41694. feature.seqlen,
  41695. feature.md5checksum,
  41696. feature.type_id,
  41697. feature.is_analysis,
  41698. feature.is_obsolete,
  41699. feature.timeaccessioned,
  41700. feature.timelastmodified
  41701. FROM (feature
  41702. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41703. WHERE ((cvterm.name)::text = 'transposable_element_insertion_site'::text);
  41704. --
  41705. -- Name: transposon_fragment; Type: VIEW; Schema: so; Owner: -
  41706. --
  41707. CREATE VIEW transposon_fragment AS
  41708. SELECT feature.feature_id AS transposon_fragment_id,
  41709. feature.feature_id,
  41710. feature.dbxref_id,
  41711. feature.organism_id,
  41712. feature.name,
  41713. feature.uniquename,
  41714. feature.residues,
  41715. feature.seqlen,
  41716. feature.md5checksum,
  41717. feature.type_id,
  41718. feature.is_analysis,
  41719. feature.is_obsolete,
  41720. feature.timeaccessioned,
  41721. feature.timelastmodified
  41722. FROM (feature
  41723. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41724. WHERE ((cvterm.name)::text = 'transposon_fragment'::text);
  41725. --
  41726. -- Name: transversion; Type: VIEW; Schema: so; Owner: -
  41727. --
  41728. CREATE VIEW transversion AS
  41729. SELECT feature.feature_id AS transversion_id,
  41730. feature.feature_id,
  41731. feature.dbxref_id,
  41732. feature.organism_id,
  41733. feature.name,
  41734. feature.uniquename,
  41735. feature.residues,
  41736. feature.seqlen,
  41737. feature.md5checksum,
  41738. feature.type_id,
  41739. feature.is_analysis,
  41740. feature.is_obsolete,
  41741. feature.timeaccessioned,
  41742. feature.timelastmodified
  41743. FROM (feature
  41744. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41745. WHERE ((((((((((((cvterm.name)::text = 'pyrimidine_to_purine_transversion'::text) OR ((cvterm.name)::text = 'purine_to_pyrimidine_transversion'::text)) OR ((cvterm.name)::text = 'C_to_A_transversion'::text)) OR ((cvterm.name)::text = 'C_to_G_transversion'::text)) OR ((cvterm.name)::text = 'T_to_A_transversion'::text)) OR ((cvterm.name)::text = 'T_to_G_transversion'::text)) OR ((cvterm.name)::text = 'A_to_C_transversion'::text)) OR ((cvterm.name)::text = 'A_to_T_transversion'::text)) OR ((cvterm.name)::text = 'G_to_C_transversion'::text)) OR ((cvterm.name)::text = 'G_to_T_transversion'::text)) OR ((cvterm.name)::text = 'transversion'::text));
  41746. --
  41747. -- Name: trinuc_repeat_microsat; Type: VIEW; Schema: so; Owner: -
  41748. --
  41749. CREATE VIEW trinuc_repeat_microsat AS
  41750. SELECT feature.feature_id AS trinuc_repeat_microsat_id,
  41751. feature.feature_id,
  41752. feature.dbxref_id,
  41753. feature.organism_id,
  41754. feature.name,
  41755. feature.uniquename,
  41756. feature.residues,
  41757. feature.seqlen,
  41758. feature.md5checksum,
  41759. feature.type_id,
  41760. feature.is_analysis,
  41761. feature.is_obsolete,
  41762. feature.timeaccessioned,
  41763. feature.timelastmodified
  41764. FROM (feature
  41765. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41766. WHERE ((cvterm.name)::text = 'trinucleotide_repeat_microsatellite_feature'::text);
  41767. --
  41768. -- Name: trna; Type: VIEW; Schema: so; Owner: -
  41769. --
  41770. CREATE VIEW trna AS
  41771. SELECT feature.feature_id AS trna_id,
  41772. feature.feature_id,
  41773. feature.dbxref_id,
  41774. feature.organism_id,
  41775. feature.name,
  41776. feature.uniquename,
  41777. feature.residues,
  41778. feature.seqlen,
  41779. feature.md5checksum,
  41780. feature.type_id,
  41781. feature.is_analysis,
  41782. feature.is_obsolete,
  41783. feature.timeaccessioned,
  41784. feature.timelastmodified
  41785. FROM (feature
  41786. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41787. WHERE ((((((((((((((((((((((((cvterm.name)::text = 'alanyl_tRNA'::text) OR ((cvterm.name)::text = 'asparaginyl_tRNA'::text)) OR ((cvterm.name)::text = 'aspartyl_tRNA'::text)) OR ((cvterm.name)::text = 'cysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutaminyl_tRNA'::text)) OR ((cvterm.name)::text = 'glutamyl_tRNA'::text)) OR ((cvterm.name)::text = 'glycyl_tRNA'::text)) OR ((cvterm.name)::text = 'histidyl_tRNA'::text)) OR ((cvterm.name)::text = 'isoleucyl_tRNA'::text)) OR ((cvterm.name)::text = 'leucyl_tRNA'::text)) OR ((cvterm.name)::text = 'lysyl_tRNA'::text)) OR ((cvterm.name)::text = 'methionyl_tRNA'::text)) OR ((cvterm.name)::text = 'phenylalanyl_tRNA'::text)) OR ((cvterm.name)::text = 'prolyl_tRNA'::text)) OR ((cvterm.name)::text = 'seryl_tRNA'::text)) OR ((cvterm.name)::text = 'threonyl_tRNA'::text)) OR ((cvterm.name)::text = 'tryptophanyl_tRNA'::text)) OR ((cvterm.name)::text = 'tyrosyl_tRNA'::text)) OR ((cvterm.name)::text = 'valyl_tRNA'::text)) OR ((cvterm.name)::text = 'pyrrolysyl_tRNA'::text)) OR ((cvterm.name)::text = 'arginyl_tRNA'::text)) OR ((cvterm.name)::text = 'selenocysteinyl_tRNA'::text)) OR ((cvterm.name)::text = 'tRNA'::text));
  41788. --
  41789. -- Name: trna_encoding; Type: VIEW; Schema: so; Owner: -
  41790. --
  41791. CREATE VIEW trna_encoding AS
  41792. SELECT feature.feature_id AS trna_encoding_id,
  41793. feature.feature_id,
  41794. feature.dbxref_id,
  41795. feature.organism_id,
  41796. feature.name,
  41797. feature.uniquename,
  41798. feature.residues,
  41799. feature.seqlen,
  41800. feature.md5checksum,
  41801. feature.type_id,
  41802. feature.is_analysis,
  41803. feature.is_obsolete,
  41804. feature.timeaccessioned,
  41805. feature.timelastmodified
  41806. FROM (feature
  41807. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41808. WHERE ((cvterm.name)::text = 'tRNA_encoding'::text);
  41809. --
  41810. -- Name: trna_gene; Type: VIEW; Schema: so; Owner: -
  41811. --
  41812. CREATE VIEW trna_gene AS
  41813. SELECT feature.feature_id AS trna_gene_id,
  41814. feature.feature_id,
  41815. feature.dbxref_id,
  41816. feature.organism_id,
  41817. feature.name,
  41818. feature.uniquename,
  41819. feature.residues,
  41820. feature.seqlen,
  41821. feature.md5checksum,
  41822. feature.type_id,
  41823. feature.is_analysis,
  41824. feature.is_obsolete,
  41825. feature.timeaccessioned,
  41826. feature.timelastmodified
  41827. FROM (feature
  41828. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41829. WHERE ((cvterm.name)::text = 'tRNA_gene'::text);
  41830. --
  41831. -- Name: trna_intron; Type: VIEW; Schema: so; Owner: -
  41832. --
  41833. CREATE VIEW trna_intron AS
  41834. SELECT feature.feature_id AS trna_intron_id,
  41835. feature.feature_id,
  41836. feature.dbxref_id,
  41837. feature.organism_id,
  41838. feature.name,
  41839. feature.uniquename,
  41840. feature.residues,
  41841. feature.seqlen,
  41842. feature.md5checksum,
  41843. feature.type_id,
  41844. feature.is_analysis,
  41845. feature.is_obsolete,
  41846. feature.timeaccessioned,
  41847. feature.timelastmodified
  41848. FROM (feature
  41849. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41850. WHERE ((cvterm.name)::text = 'tRNA_intron'::text);
  41851. --
  41852. -- Name: trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  41853. --
  41854. CREATE VIEW trna_primary_transcript AS
  41855. SELECT feature.feature_id AS trna_primary_transcript_id,
  41856. feature.feature_id,
  41857. feature.dbxref_id,
  41858. feature.organism_id,
  41859. feature.name,
  41860. feature.uniquename,
  41861. feature.residues,
  41862. feature.seqlen,
  41863. feature.md5checksum,
  41864. feature.type_id,
  41865. feature.is_analysis,
  41866. feature.is_obsolete,
  41867. feature.timeaccessioned,
  41868. feature.timelastmodified
  41869. FROM (feature
  41870. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41871. WHERE ((((((((((((((((((((((((cvterm.name)::text = 'alanine_tRNA_primary_transcript'::text) OR ((cvterm.name)::text = 'arginine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'asparagine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'aspartic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'cysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamic_acid_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glutamine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'glycine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'histidine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'isoleucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'leucine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'lysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'methionine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'phenylalanine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'proline_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'serine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'threonine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tryptophan_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tyrosine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'valine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'pyrrolysine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'selenocysteine_tRNA_primary_transcript'::text)) OR ((cvterm.name)::text = 'tRNA_primary_transcript'::text));
  41872. --
  41873. -- Name: trna_region; Type: VIEW; Schema: so; Owner: -
  41874. --
  41875. CREATE VIEW trna_region AS
  41876. SELECT feature.feature_id AS trna_region_id,
  41877. feature.feature_id,
  41878. feature.dbxref_id,
  41879. feature.organism_id,
  41880. feature.name,
  41881. feature.uniquename,
  41882. feature.residues,
  41883. feature.seqlen,
  41884. feature.md5checksum,
  41885. feature.type_id,
  41886. feature.is_analysis,
  41887. feature.is_obsolete,
  41888. feature.timeaccessioned,
  41889. feature.timelastmodified
  41890. FROM (feature
  41891. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41892. WHERE (((((((cvterm.name)::text = 'anticodon_loop'::text) OR ((cvterm.name)::text = 'anticodon'::text)) OR ((cvterm.name)::text = 'CCA_tail'::text)) OR ((cvterm.name)::text = 'DHU_loop'::text)) OR ((cvterm.name)::text = 'T_loop'::text)) OR ((cvterm.name)::text = 'tRNA_region'::text));
  41893. --
  41894. -- Name: try_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  41895. --
  41896. CREATE VIEW try_trna_primary_transcript AS
  41897. SELECT feature.feature_id AS try_trna_primary_transcript_id,
  41898. feature.feature_id,
  41899. feature.dbxref_id,
  41900. feature.organism_id,
  41901. feature.name,
  41902. feature.uniquename,
  41903. feature.residues,
  41904. feature.seqlen,
  41905. feature.md5checksum,
  41906. feature.type_id,
  41907. feature.is_analysis,
  41908. feature.is_obsolete,
  41909. feature.timeaccessioned,
  41910. feature.timelastmodified
  41911. FROM (feature
  41912. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41913. WHERE ((cvterm.name)::text = 'tryptophan_tRNA_primary_transcript'::text);
  41914. --
  41915. -- Name: tryptophan; Type: VIEW; Schema: so; Owner: -
  41916. --
  41917. CREATE VIEW tryptophan AS
  41918. SELECT feature.feature_id AS tryptophan_id,
  41919. feature.feature_id,
  41920. feature.dbxref_id,
  41921. feature.organism_id,
  41922. feature.name,
  41923. feature.uniquename,
  41924. feature.residues,
  41925. feature.seqlen,
  41926. feature.md5checksum,
  41927. feature.type_id,
  41928. feature.is_analysis,
  41929. feature.is_obsolete,
  41930. feature.timeaccessioned,
  41931. feature.timelastmodified
  41932. FROM (feature
  41933. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41934. WHERE ((cvterm.name)::text = 'tryptophan'::text);
  41935. --
  41936. -- Name: tryptophanyl_trna; Type: VIEW; Schema: so; Owner: -
  41937. --
  41938. CREATE VIEW tryptophanyl_trna AS
  41939. SELECT feature.feature_id AS tryptophanyl_trna_id,
  41940. feature.feature_id,
  41941. feature.dbxref_id,
  41942. feature.organism_id,
  41943. feature.name,
  41944. feature.uniquename,
  41945. feature.residues,
  41946. feature.seqlen,
  41947. feature.md5checksum,
  41948. feature.type_id,
  41949. feature.is_analysis,
  41950. feature.is_obsolete,
  41951. feature.timeaccessioned,
  41952. feature.timelastmodified
  41953. FROM (feature
  41954. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41955. WHERE ((cvterm.name)::text = 'tryptophanyl_tRNA'::text);
  41956. --
  41957. -- Name: tss; Type: VIEW; Schema: so; Owner: -
  41958. --
  41959. CREATE VIEW tss AS
  41960. SELECT feature.feature_id AS tss_id,
  41961. feature.feature_id,
  41962. feature.dbxref_id,
  41963. feature.organism_id,
  41964. feature.name,
  41965. feature.uniquename,
  41966. feature.residues,
  41967. feature.seqlen,
  41968. feature.md5checksum,
  41969. feature.type_id,
  41970. feature.is_analysis,
  41971. feature.is_obsolete,
  41972. feature.timeaccessioned,
  41973. feature.timelastmodified
  41974. FROM (feature
  41975. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41976. WHERE ((((cvterm.name)::text = 'major_TSS'::text) OR ((cvterm.name)::text = 'minor_TSS'::text)) OR ((cvterm.name)::text = 'TSS'::text));
  41977. --
  41978. -- Name: tss_region; Type: VIEW; Schema: so; Owner: -
  41979. --
  41980. CREATE VIEW tss_region AS
  41981. SELECT feature.feature_id AS tss_region_id,
  41982. feature.feature_id,
  41983. feature.dbxref_id,
  41984. feature.organism_id,
  41985. feature.name,
  41986. feature.uniquename,
  41987. feature.residues,
  41988. feature.seqlen,
  41989. feature.md5checksum,
  41990. feature.type_id,
  41991. feature.is_analysis,
  41992. feature.is_obsolete,
  41993. feature.timeaccessioned,
  41994. feature.timelastmodified
  41995. FROM (feature
  41996. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  41997. WHERE ((cvterm.name)::text = 'TSS_region'::text);
  41998. --
  41999. -- Name: twintron; Type: VIEW; Schema: so; Owner: -
  42000. --
  42001. CREATE VIEW twintron AS
  42002. SELECT feature.feature_id AS twintron_id,
  42003. feature.feature_id,
  42004. feature.dbxref_id,
  42005. feature.organism_id,
  42006. feature.name,
  42007. feature.uniquename,
  42008. feature.residues,
  42009. feature.seqlen,
  42010. feature.md5checksum,
  42011. feature.type_id,
  42012. feature.is_analysis,
  42013. feature.is_obsolete,
  42014. feature.timeaccessioned,
  42015. feature.timelastmodified
  42016. FROM (feature
  42017. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42018. WHERE ((cvterm.name)::text = 'twintron'::text);
  42019. --
  42020. -- Name: two_methyladenosine; Type: VIEW; Schema: so; Owner: -
  42021. --
  42022. CREATE VIEW two_methyladenosine AS
  42023. SELECT feature.feature_id AS two_methyladenosine_id,
  42024. feature.feature_id,
  42025. feature.dbxref_id,
  42026. feature.organism_id,
  42027. feature.name,
  42028. feature.uniquename,
  42029. feature.residues,
  42030. feature.seqlen,
  42031. feature.md5checksum,
  42032. feature.type_id,
  42033. feature.is_analysis,
  42034. feature.is_obsolete,
  42035. feature.timeaccessioned,
  42036. feature.timelastmodified
  42037. FROM (feature
  42038. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42039. WHERE ((cvterm.name)::text = 'two_methyladenosine'::text);
  42040. --
  42041. -- Name: two_methylthio_n6_cis_hydroxyisopentenyl_adenosine; Type: VIEW; Schema: so; Owner: -
  42042. --
  42043. CREATE VIEW two_methylthio_n6_cis_hydroxyisopentenyl_adenosine AS
  42044. SELECT feature.feature_id AS two_methylthio_n6_cis_hydroxyisopentenyl_adenosine_id,
  42045. feature.feature_id,
  42046. feature.dbxref_id,
  42047. feature.organism_id,
  42048. feature.name,
  42049. feature.uniquename,
  42050. feature.residues,
  42051. feature.seqlen,
  42052. feature.md5checksum,
  42053. feature.type_id,
  42054. feature.is_analysis,
  42055. feature.is_obsolete,
  42056. feature.timeaccessioned,
  42057. feature.timelastmodified
  42058. FROM (feature
  42059. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42060. WHERE ((cvterm.name)::text = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine'::text);
  42061. --
  42062. -- Name: two_methylthio_n6_hydroxynorvalyl_carbamoyladenosine; Type: VIEW; Schema: so; Owner: -
  42063. --
  42064. CREATE VIEW two_methylthio_n6_hydroxynorvalyl_carbamoyladenosine AS
  42065. SELECT feature.feature_id AS two_methylthio_n6_hydroxynorvalyl_carbamoyladenosine_id,
  42066. feature.feature_id,
  42067. feature.dbxref_id,
  42068. feature.organism_id,
  42069. feature.name,
  42070. feature.uniquename,
  42071. feature.residues,
  42072. feature.seqlen,
  42073. feature.md5checksum,
  42074. feature.type_id,
  42075. feature.is_analysis,
  42076. feature.is_obsolete,
  42077. feature.timeaccessioned,
  42078. feature.timelastmodified
  42079. FROM (feature
  42080. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42081. WHERE ((cvterm.name)::text = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine'::text);
  42082. --
  42083. -- Name: two_methylthio_n6_isopentenyladenosine; Type: VIEW; Schema: so; Owner: -
  42084. --
  42085. CREATE VIEW two_methylthio_n6_isopentenyladenosine AS
  42086. SELECT feature.feature_id AS two_methylthio_n6_isopentenyladenosine_id,
  42087. feature.feature_id,
  42088. feature.dbxref_id,
  42089. feature.organism_id,
  42090. feature.name,
  42091. feature.uniquename,
  42092. feature.residues,
  42093. feature.seqlen,
  42094. feature.md5checksum,
  42095. feature.type_id,
  42096. feature.is_analysis,
  42097. feature.is_obsolete,
  42098. feature.timeaccessioned,
  42099. feature.timelastmodified
  42100. FROM (feature
  42101. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42102. WHERE ((cvterm.name)::text = 'two_methylthio_N6_isopentenyladenosine'::text);
  42103. --
  42104. -- Name: two_methylthio_n6_methyladenosine; Type: VIEW; Schema: so; Owner: -
  42105. --
  42106. CREATE VIEW two_methylthio_n6_methyladenosine AS
  42107. SELECT feature.feature_id AS two_methylthio_n6_methyladenosine_id,
  42108. feature.feature_id,
  42109. feature.dbxref_id,
  42110. feature.organism_id,
  42111. feature.name,
  42112. feature.uniquename,
  42113. feature.residues,
  42114. feature.seqlen,
  42115. feature.md5checksum,
  42116. feature.type_id,
  42117. feature.is_analysis,
  42118. feature.is_obsolete,
  42119. feature.timeaccessioned,
  42120. feature.timelastmodified
  42121. FROM (feature
  42122. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42123. WHERE ((cvterm.name)::text = 'two_methylthio_N6_methyladenosine'::text);
  42124. --
  42125. -- Name: two_methylthio_n6_threonyl_carbamoyladenosine; Type: VIEW; Schema: so; Owner: -
  42126. --
  42127. CREATE VIEW two_methylthio_n6_threonyl_carbamoyladenosine AS
  42128. SELECT feature.feature_id AS two_methylthio_n6_threonyl_carbamoyladenosine_id,
  42129. feature.feature_id,
  42130. feature.dbxref_id,
  42131. feature.organism_id,
  42132. feature.name,
  42133. feature.uniquename,
  42134. feature.residues,
  42135. feature.seqlen,
  42136. feature.md5checksum,
  42137. feature.type_id,
  42138. feature.is_analysis,
  42139. feature.is_obsolete,
  42140. feature.timeaccessioned,
  42141. feature.timelastmodified
  42142. FROM (feature
  42143. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42144. WHERE ((cvterm.name)::text = 'two_methylthio_N6_threonyl_carbamoyladenosine'::text);
  42145. --
  42146. -- Name: two_prime_o_methyladenosine; Type: VIEW; Schema: so; Owner: -
  42147. --
  42148. CREATE VIEW two_prime_o_methyladenosine AS
  42149. SELECT feature.feature_id AS two_prime_o_methyladenosine_id,
  42150. feature.feature_id,
  42151. feature.dbxref_id,
  42152. feature.organism_id,
  42153. feature.name,
  42154. feature.uniquename,
  42155. feature.residues,
  42156. feature.seqlen,
  42157. feature.md5checksum,
  42158. feature.type_id,
  42159. feature.is_analysis,
  42160. feature.is_obsolete,
  42161. feature.timeaccessioned,
  42162. feature.timelastmodified
  42163. FROM (feature
  42164. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42165. WHERE ((cvterm.name)::text = 'two_prime_O_methyladenosine'::text);
  42166. --
  42167. -- Name: two_prime_o_methylcytidine; Type: VIEW; Schema: so; Owner: -
  42168. --
  42169. CREATE VIEW two_prime_o_methylcytidine AS
  42170. SELECT feature.feature_id AS two_prime_o_methylcytidine_id,
  42171. feature.feature_id,
  42172. feature.dbxref_id,
  42173. feature.organism_id,
  42174. feature.name,
  42175. feature.uniquename,
  42176. feature.residues,
  42177. feature.seqlen,
  42178. feature.md5checksum,
  42179. feature.type_id,
  42180. feature.is_analysis,
  42181. feature.is_obsolete,
  42182. feature.timeaccessioned,
  42183. feature.timelastmodified
  42184. FROM (feature
  42185. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42186. WHERE ((cvterm.name)::text = 'two_prime_O_methylcytidine'::text);
  42187. --
  42188. -- Name: two_prime_o_methylguanosine; Type: VIEW; Schema: so; Owner: -
  42189. --
  42190. CREATE VIEW two_prime_o_methylguanosine AS
  42191. SELECT feature.feature_id AS two_prime_o_methylguanosine_id,
  42192. feature.feature_id,
  42193. feature.dbxref_id,
  42194. feature.organism_id,
  42195. feature.name,
  42196. feature.uniquename,
  42197. feature.residues,
  42198. feature.seqlen,
  42199. feature.md5checksum,
  42200. feature.type_id,
  42201. feature.is_analysis,
  42202. feature.is_obsolete,
  42203. feature.timeaccessioned,
  42204. feature.timelastmodified
  42205. FROM (feature
  42206. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42207. WHERE ((cvterm.name)::text = 'two_prime_O_methylguanosine'::text);
  42208. --
  42209. -- Name: two_prime_o_methylinosine; Type: VIEW; Schema: so; Owner: -
  42210. --
  42211. CREATE VIEW two_prime_o_methylinosine AS
  42212. SELECT feature.feature_id AS two_prime_o_methylinosine_id,
  42213. feature.feature_id,
  42214. feature.dbxref_id,
  42215. feature.organism_id,
  42216. feature.name,
  42217. feature.uniquename,
  42218. feature.residues,
  42219. feature.seqlen,
  42220. feature.md5checksum,
  42221. feature.type_id,
  42222. feature.is_analysis,
  42223. feature.is_obsolete,
  42224. feature.timeaccessioned,
  42225. feature.timelastmodified
  42226. FROM (feature
  42227. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42228. WHERE ((cvterm.name)::text = 'two_prime_O_methylinosine'::text);
  42229. --
  42230. -- Name: two_prime_o_methylpseudouridine; Type: VIEW; Schema: so; Owner: -
  42231. --
  42232. CREATE VIEW two_prime_o_methylpseudouridine AS
  42233. SELECT feature.feature_id AS two_prime_o_methylpseudouridine_id,
  42234. feature.feature_id,
  42235. feature.dbxref_id,
  42236. feature.organism_id,
  42237. feature.name,
  42238. feature.uniquename,
  42239. feature.residues,
  42240. feature.seqlen,
  42241. feature.md5checksum,
  42242. feature.type_id,
  42243. feature.is_analysis,
  42244. feature.is_obsolete,
  42245. feature.timeaccessioned,
  42246. feature.timelastmodified
  42247. FROM (feature
  42248. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42249. WHERE ((cvterm.name)::text = 'two_prime_O_methylpseudouridine'::text);
  42250. --
  42251. -- Name: two_prime_o_methyluridine; Type: VIEW; Schema: so; Owner: -
  42252. --
  42253. CREATE VIEW two_prime_o_methyluridine AS
  42254. SELECT feature.feature_id AS two_prime_o_methyluridine_id,
  42255. feature.feature_id,
  42256. feature.dbxref_id,
  42257. feature.organism_id,
  42258. feature.name,
  42259. feature.uniquename,
  42260. feature.residues,
  42261. feature.seqlen,
  42262. feature.md5checksum,
  42263. feature.type_id,
  42264. feature.is_analysis,
  42265. feature.is_obsolete,
  42266. feature.timeaccessioned,
  42267. feature.timelastmodified
  42268. FROM (feature
  42269. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42270. WHERE ((cvterm.name)::text = 'two_prime_O_methyluridine'::text);
  42271. --
  42272. -- Name: two_prime_o_riboa_phosphate; Type: VIEW; Schema: so; Owner: -
  42273. --
  42274. CREATE VIEW two_prime_o_riboa_phosphate AS
  42275. SELECT feature.feature_id AS two_prime_o_riboa_phosphate_id,
  42276. feature.feature_id,
  42277. feature.dbxref_id,
  42278. feature.organism_id,
  42279. feature.name,
  42280. feature.uniquename,
  42281. feature.residues,
  42282. feature.seqlen,
  42283. feature.md5checksum,
  42284. feature.type_id,
  42285. feature.is_analysis,
  42286. feature.is_obsolete,
  42287. feature.timeaccessioned,
  42288. feature.timelastmodified
  42289. FROM (feature
  42290. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42291. WHERE ((cvterm.name)::text = 'two_prime_O_ribosyladenosine_phosphate'::text);
  42292. --
  42293. -- Name: two_prime_o_ribosylguanosine_phosphate; Type: VIEW; Schema: so; Owner: -
  42294. --
  42295. CREATE VIEW two_prime_o_ribosylguanosine_phosphate AS
  42296. SELECT feature.feature_id AS two_prime_o_ribosylguanosine_phosphate_id,
  42297. feature.feature_id,
  42298. feature.dbxref_id,
  42299. feature.organism_id,
  42300. feature.name,
  42301. feature.uniquename,
  42302. feature.residues,
  42303. feature.seqlen,
  42304. feature.md5checksum,
  42305. feature.type_id,
  42306. feature.is_analysis,
  42307. feature.is_obsolete,
  42308. feature.timeaccessioned,
  42309. feature.timelastmodified
  42310. FROM (feature
  42311. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42312. WHERE ((cvterm.name)::text = 'two_prime_O_ribosylguanosine_phosphate'::text);
  42313. --
  42314. -- Name: two_thio_two_prime_o_methyluridine; Type: VIEW; Schema: so; Owner: -
  42315. --
  42316. CREATE VIEW two_thio_two_prime_o_methyluridine AS
  42317. SELECT feature.feature_id AS two_thio_two_prime_o_methyluridine_id,
  42318. feature.feature_id,
  42319. feature.dbxref_id,
  42320. feature.organism_id,
  42321. feature.name,
  42322. feature.uniquename,
  42323. feature.residues,
  42324. feature.seqlen,
  42325. feature.md5checksum,
  42326. feature.type_id,
  42327. feature.is_analysis,
  42328. feature.is_obsolete,
  42329. feature.timeaccessioned,
  42330. feature.timelastmodified
  42331. FROM (feature
  42332. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42333. WHERE ((cvterm.name)::text = 'two_thio_two_prime_O_methyluridine'::text);
  42334. --
  42335. -- Name: two_thiocytidine; Type: VIEW; Schema: so; Owner: -
  42336. --
  42337. CREATE VIEW two_thiocytidine AS
  42338. SELECT feature.feature_id AS two_thiocytidine_id,
  42339. feature.feature_id,
  42340. feature.dbxref_id,
  42341. feature.organism_id,
  42342. feature.name,
  42343. feature.uniquename,
  42344. feature.residues,
  42345. feature.seqlen,
  42346. feature.md5checksum,
  42347. feature.type_id,
  42348. feature.is_analysis,
  42349. feature.is_obsolete,
  42350. feature.timeaccessioned,
  42351. feature.timelastmodified
  42352. FROM (feature
  42353. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42354. WHERE ((cvterm.name)::text = 'two_thiocytidine'::text);
  42355. --
  42356. -- Name: two_thiouridine; Type: VIEW; Schema: so; Owner: -
  42357. --
  42358. CREATE VIEW two_thiouridine AS
  42359. SELECT feature.feature_id AS two_thiouridine_id,
  42360. feature.feature_id,
  42361. feature.dbxref_id,
  42362. feature.organism_id,
  42363. feature.name,
  42364. feature.uniquename,
  42365. feature.residues,
  42366. feature.seqlen,
  42367. feature.md5checksum,
  42368. feature.type_id,
  42369. feature.is_analysis,
  42370. feature.is_obsolete,
  42371. feature.timeaccessioned,
  42372. feature.timelastmodified
  42373. FROM (feature
  42374. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42375. WHERE ((cvterm.name)::text = 'two_thiouridine'::text);
  42376. --
  42377. -- Name: twokb_upstream_variant; Type: VIEW; Schema: so; Owner: -
  42378. --
  42379. CREATE VIEW twokb_upstream_variant AS
  42380. SELECT feature.feature_id AS twokb_upstream_variant_id,
  42381. feature.feature_id,
  42382. feature.dbxref_id,
  42383. feature.organism_id,
  42384. feature.name,
  42385. feature.uniquename,
  42386. feature.residues,
  42387. feature.seqlen,
  42388. feature.md5checksum,
  42389. feature.type_id,
  42390. feature.is_analysis,
  42391. feature.is_obsolete,
  42392. feature.timeaccessioned,
  42393. feature.timelastmodified
  42394. FROM (feature
  42395. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42396. WHERE ((cvterm.name)::text = '2KB_upstream_variant'::text);
  42397. --
  42398. -- Name: tyrosine; Type: VIEW; Schema: so; Owner: -
  42399. --
  42400. CREATE VIEW tyrosine AS
  42401. SELECT feature.feature_id AS tyrosine_id,
  42402. feature.feature_id,
  42403. feature.dbxref_id,
  42404. feature.organism_id,
  42405. feature.name,
  42406. feature.uniquename,
  42407. feature.residues,
  42408. feature.seqlen,
  42409. feature.md5checksum,
  42410. feature.type_id,
  42411. feature.is_analysis,
  42412. feature.is_obsolete,
  42413. feature.timeaccessioned,
  42414. feature.timelastmodified
  42415. FROM (feature
  42416. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42417. WHERE ((cvterm.name)::text = 'tyrosine'::text);
  42418. --
  42419. -- Name: tyrosine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  42420. --
  42421. CREATE VIEW tyrosine_trna_primary_transcript AS
  42422. SELECT feature.feature_id AS tyrosine_trna_primary_transcript_id,
  42423. feature.feature_id,
  42424. feature.dbxref_id,
  42425. feature.organism_id,
  42426. feature.name,
  42427. feature.uniquename,
  42428. feature.residues,
  42429. feature.seqlen,
  42430. feature.md5checksum,
  42431. feature.type_id,
  42432. feature.is_analysis,
  42433. feature.is_obsolete,
  42434. feature.timeaccessioned,
  42435. feature.timelastmodified
  42436. FROM (feature
  42437. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42438. WHERE ((cvterm.name)::text = 'tyrosine_tRNA_primary_transcript'::text);
  42439. --
  42440. -- Name: tyrosyl_trna; Type: VIEW; Schema: so; Owner: -
  42441. --
  42442. CREATE VIEW tyrosyl_trna AS
  42443. SELECT feature.feature_id AS tyrosyl_trna_id,
  42444. feature.feature_id,
  42445. feature.dbxref_id,
  42446. feature.organism_id,
  42447. feature.name,
  42448. feature.uniquename,
  42449. feature.residues,
  42450. feature.seqlen,
  42451. feature.md5checksum,
  42452. feature.type_id,
  42453. feature.is_analysis,
  42454. feature.is_obsolete,
  42455. feature.timeaccessioned,
  42456. feature.timelastmodified
  42457. FROM (feature
  42458. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42459. WHERE ((cvterm.name)::text = 'tyrosyl_tRNA'::text);
  42460. --
  42461. -- Name: u11_snrna; Type: VIEW; Schema: so; Owner: -
  42462. --
  42463. CREATE VIEW u11_snrna AS
  42464. SELECT feature.feature_id AS u11_snrna_id,
  42465. feature.feature_id,
  42466. feature.dbxref_id,
  42467. feature.organism_id,
  42468. feature.name,
  42469. feature.uniquename,
  42470. feature.residues,
  42471. feature.seqlen,
  42472. feature.md5checksum,
  42473. feature.type_id,
  42474. feature.is_analysis,
  42475. feature.is_obsolete,
  42476. feature.timeaccessioned,
  42477. feature.timelastmodified
  42478. FROM (feature
  42479. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42480. WHERE ((cvterm.name)::text = 'U11_snRNA'::text);
  42481. --
  42482. -- Name: u12_intron; Type: VIEW; Schema: so; Owner: -
  42483. --
  42484. CREATE VIEW u12_intron AS
  42485. SELECT feature.feature_id AS u12_intron_id,
  42486. feature.feature_id,
  42487. feature.dbxref_id,
  42488. feature.organism_id,
  42489. feature.name,
  42490. feature.uniquename,
  42491. feature.residues,
  42492. feature.seqlen,
  42493. feature.md5checksum,
  42494. feature.type_id,
  42495. feature.is_analysis,
  42496. feature.is_obsolete,
  42497. feature.timeaccessioned,
  42498. feature.timelastmodified
  42499. FROM (feature
  42500. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42501. WHERE ((cvterm.name)::text = 'U12_intron'::text);
  42502. --
  42503. -- Name: u12_snrna; Type: VIEW; Schema: so; Owner: -
  42504. --
  42505. CREATE VIEW u12_snrna AS
  42506. SELECT feature.feature_id AS u12_snrna_id,
  42507. feature.feature_id,
  42508. feature.dbxref_id,
  42509. feature.organism_id,
  42510. feature.name,
  42511. feature.uniquename,
  42512. feature.residues,
  42513. feature.seqlen,
  42514. feature.md5checksum,
  42515. feature.type_id,
  42516. feature.is_analysis,
  42517. feature.is_obsolete,
  42518. feature.timeaccessioned,
  42519. feature.timelastmodified
  42520. FROM (feature
  42521. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42522. WHERE ((cvterm.name)::text = 'U12_snRNA'::text);
  42523. --
  42524. -- Name: u14_snorna; Type: VIEW; Schema: so; Owner: -
  42525. --
  42526. CREATE VIEW u14_snorna AS
  42527. SELECT feature.feature_id AS u14_snorna_id,
  42528. feature.feature_id,
  42529. feature.dbxref_id,
  42530. feature.organism_id,
  42531. feature.name,
  42532. feature.uniquename,
  42533. feature.residues,
  42534. feature.seqlen,
  42535. feature.md5checksum,
  42536. feature.type_id,
  42537. feature.is_analysis,
  42538. feature.is_obsolete,
  42539. feature.timeaccessioned,
  42540. feature.timelastmodified
  42541. FROM (feature
  42542. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42543. WHERE ((cvterm.name)::text = 'U14_snoRNA'::text);
  42544. --
  42545. -- Name: u14_snorna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  42546. --
  42547. CREATE VIEW u14_snorna_primary_transcript AS
  42548. SELECT feature.feature_id AS u14_snorna_primary_transcript_id,
  42549. feature.feature_id,
  42550. feature.dbxref_id,
  42551. feature.organism_id,
  42552. feature.name,
  42553. feature.uniquename,
  42554. feature.residues,
  42555. feature.seqlen,
  42556. feature.md5checksum,
  42557. feature.type_id,
  42558. feature.is_analysis,
  42559. feature.is_obsolete,
  42560. feature.timeaccessioned,
  42561. feature.timelastmodified
  42562. FROM (feature
  42563. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42564. WHERE ((cvterm.name)::text = 'U14_snoRNA_primary_transcript'::text);
  42565. --
  42566. -- Name: u1_snrna; Type: VIEW; Schema: so; Owner: -
  42567. --
  42568. CREATE VIEW u1_snrna AS
  42569. SELECT feature.feature_id AS u1_snrna_id,
  42570. feature.feature_id,
  42571. feature.dbxref_id,
  42572. feature.organism_id,
  42573. feature.name,
  42574. feature.uniquename,
  42575. feature.residues,
  42576. feature.seqlen,
  42577. feature.md5checksum,
  42578. feature.type_id,
  42579. feature.is_analysis,
  42580. feature.is_obsolete,
  42581. feature.timeaccessioned,
  42582. feature.timelastmodified
  42583. FROM (feature
  42584. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42585. WHERE ((cvterm.name)::text = 'U1_snRNA'::text);
  42586. --
  42587. -- Name: u2_intron; Type: VIEW; Schema: so; Owner: -
  42588. --
  42589. CREATE VIEW u2_intron AS
  42590. SELECT feature.feature_id AS u2_intron_id,
  42591. feature.feature_id,
  42592. feature.dbxref_id,
  42593. feature.organism_id,
  42594. feature.name,
  42595. feature.uniquename,
  42596. feature.residues,
  42597. feature.seqlen,
  42598. feature.md5checksum,
  42599. feature.type_id,
  42600. feature.is_analysis,
  42601. feature.is_obsolete,
  42602. feature.timeaccessioned,
  42603. feature.timelastmodified
  42604. FROM (feature
  42605. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42606. WHERE ((cvterm.name)::text = 'U2_intron'::text);
  42607. --
  42608. -- Name: u2_snrna; Type: VIEW; Schema: so; Owner: -
  42609. --
  42610. CREATE VIEW u2_snrna AS
  42611. SELECT feature.feature_id AS u2_snrna_id,
  42612. feature.feature_id,
  42613. feature.dbxref_id,
  42614. feature.organism_id,
  42615. feature.name,
  42616. feature.uniquename,
  42617. feature.residues,
  42618. feature.seqlen,
  42619. feature.md5checksum,
  42620. feature.type_id,
  42621. feature.is_analysis,
  42622. feature.is_obsolete,
  42623. feature.timeaccessioned,
  42624. feature.timelastmodified
  42625. FROM (feature
  42626. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42627. WHERE ((cvterm.name)::text = 'U2_snRNA'::text);
  42628. --
  42629. -- Name: u3_five_prime_ltr_region; Type: VIEW; Schema: so; Owner: -
  42630. --
  42631. CREATE VIEW u3_five_prime_ltr_region AS
  42632. SELECT feature.feature_id AS u3_five_prime_ltr_region_id,
  42633. feature.feature_id,
  42634. feature.dbxref_id,
  42635. feature.organism_id,
  42636. feature.name,
  42637. feature.uniquename,
  42638. feature.residues,
  42639. feature.seqlen,
  42640. feature.md5checksum,
  42641. feature.type_id,
  42642. feature.is_analysis,
  42643. feature.is_obsolete,
  42644. feature.timeaccessioned,
  42645. feature.timelastmodified
  42646. FROM (feature
  42647. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42648. WHERE ((cvterm.name)::text = 'U3_five_prime_LTR_region'::text);
  42649. --
  42650. -- Name: u3_ltr_region; Type: VIEW; Schema: so; Owner: -
  42651. --
  42652. CREATE VIEW u3_ltr_region AS
  42653. SELECT feature.feature_id AS u3_ltr_region_id,
  42654. feature.feature_id,
  42655. feature.dbxref_id,
  42656. feature.organism_id,
  42657. feature.name,
  42658. feature.uniquename,
  42659. feature.residues,
  42660. feature.seqlen,
  42661. feature.md5checksum,
  42662. feature.type_id,
  42663. feature.is_analysis,
  42664. feature.is_obsolete,
  42665. feature.timeaccessioned,
  42666. feature.timelastmodified
  42667. FROM (feature
  42668. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42669. WHERE (((cvterm.name)::text = 'U3_five_prime_LTR_region'::text) OR ((cvterm.name)::text = 'U3_LTR_region'::text));
  42670. --
  42671. -- Name: u3_snorna; Type: VIEW; Schema: so; Owner: -
  42672. --
  42673. CREATE VIEW u3_snorna AS
  42674. SELECT feature.feature_id AS u3_snorna_id,
  42675. feature.feature_id,
  42676. feature.dbxref_id,
  42677. feature.organism_id,
  42678. feature.name,
  42679. feature.uniquename,
  42680. feature.residues,
  42681. feature.seqlen,
  42682. feature.md5checksum,
  42683. feature.type_id,
  42684. feature.is_analysis,
  42685. feature.is_obsolete,
  42686. feature.timeaccessioned,
  42687. feature.timelastmodified
  42688. FROM (feature
  42689. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42690. WHERE ((cvterm.name)::text = 'U3_snoRNA'::text);
  42691. --
  42692. -- Name: u3_three_prime_ltr_region; Type: VIEW; Schema: so; Owner: -
  42693. --
  42694. CREATE VIEW u3_three_prime_ltr_region AS
  42695. SELECT feature.feature_id AS u3_three_prime_ltr_region_id,
  42696. feature.feature_id,
  42697. feature.dbxref_id,
  42698. feature.organism_id,
  42699. feature.name,
  42700. feature.uniquename,
  42701. feature.residues,
  42702. feature.seqlen,
  42703. feature.md5checksum,
  42704. feature.type_id,
  42705. feature.is_analysis,
  42706. feature.is_obsolete,
  42707. feature.timeaccessioned,
  42708. feature.timelastmodified
  42709. FROM (feature
  42710. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42711. WHERE ((cvterm.name)::text = 'U3_three_prime_LTR_region'::text);
  42712. --
  42713. -- Name: u4_snrna; Type: VIEW; Schema: so; Owner: -
  42714. --
  42715. CREATE VIEW u4_snrna AS
  42716. SELECT feature.feature_id AS u4_snrna_id,
  42717. feature.feature_id,
  42718. feature.dbxref_id,
  42719. feature.organism_id,
  42720. feature.name,
  42721. feature.uniquename,
  42722. feature.residues,
  42723. feature.seqlen,
  42724. feature.md5checksum,
  42725. feature.type_id,
  42726. feature.is_analysis,
  42727. feature.is_obsolete,
  42728. feature.timeaccessioned,
  42729. feature.timelastmodified
  42730. FROM (feature
  42731. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42732. WHERE ((cvterm.name)::text = 'U4_snRNA'::text);
  42733. --
  42734. -- Name: u4atac_snrna; Type: VIEW; Schema: so; Owner: -
  42735. --
  42736. CREATE VIEW u4atac_snrna AS
  42737. SELECT feature.feature_id AS u4atac_snrna_id,
  42738. feature.feature_id,
  42739. feature.dbxref_id,
  42740. feature.organism_id,
  42741. feature.name,
  42742. feature.uniquename,
  42743. feature.residues,
  42744. feature.seqlen,
  42745. feature.md5checksum,
  42746. feature.type_id,
  42747. feature.is_analysis,
  42748. feature.is_obsolete,
  42749. feature.timeaccessioned,
  42750. feature.timelastmodified
  42751. FROM (feature
  42752. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42753. WHERE ((cvterm.name)::text = 'U4atac_snRNA'::text);
  42754. --
  42755. -- Name: u5_five_prime_ltr_region; Type: VIEW; Schema: so; Owner: -
  42756. --
  42757. CREATE VIEW u5_five_prime_ltr_region AS
  42758. SELECT feature.feature_id AS u5_five_prime_ltr_region_id,
  42759. feature.feature_id,
  42760. feature.dbxref_id,
  42761. feature.organism_id,
  42762. feature.name,
  42763. feature.uniquename,
  42764. feature.residues,
  42765. feature.seqlen,
  42766. feature.md5checksum,
  42767. feature.type_id,
  42768. feature.is_analysis,
  42769. feature.is_obsolete,
  42770. feature.timeaccessioned,
  42771. feature.timelastmodified
  42772. FROM (feature
  42773. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42774. WHERE ((cvterm.name)::text = 'U5_five_prime_LTR_region'::text);
  42775. --
  42776. -- Name: u5_ltr_region; Type: VIEW; Schema: so; Owner: -
  42777. --
  42778. CREATE VIEW u5_ltr_region AS
  42779. SELECT feature.feature_id AS u5_ltr_region_id,
  42780. feature.feature_id,
  42781. feature.dbxref_id,
  42782. feature.organism_id,
  42783. feature.name,
  42784. feature.uniquename,
  42785. feature.residues,
  42786. feature.seqlen,
  42787. feature.md5checksum,
  42788. feature.type_id,
  42789. feature.is_analysis,
  42790. feature.is_obsolete,
  42791. feature.timeaccessioned,
  42792. feature.timelastmodified
  42793. FROM (feature
  42794. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42795. WHERE (((cvterm.name)::text = 'U5_five_prime_LTR_region'::text) OR ((cvterm.name)::text = 'U5_LTR_region'::text));
  42796. --
  42797. -- Name: u5_snrna; Type: VIEW; Schema: so; Owner: -
  42798. --
  42799. CREATE VIEW u5_snrna AS
  42800. SELECT feature.feature_id AS u5_snrna_id,
  42801. feature.feature_id,
  42802. feature.dbxref_id,
  42803. feature.organism_id,
  42804. feature.name,
  42805. feature.uniquename,
  42806. feature.residues,
  42807. feature.seqlen,
  42808. feature.md5checksum,
  42809. feature.type_id,
  42810. feature.is_analysis,
  42811. feature.is_obsolete,
  42812. feature.timeaccessioned,
  42813. feature.timelastmodified
  42814. FROM (feature
  42815. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42816. WHERE ((cvterm.name)::text = 'U5_snRNA'::text);
  42817. --
  42818. -- Name: u5_three_prime_ltr_region; Type: VIEW; Schema: so; Owner: -
  42819. --
  42820. CREATE VIEW u5_three_prime_ltr_region AS
  42821. SELECT feature.feature_id AS u5_three_prime_ltr_region_id,
  42822. feature.feature_id,
  42823. feature.dbxref_id,
  42824. feature.organism_id,
  42825. feature.name,
  42826. feature.uniquename,
  42827. feature.residues,
  42828. feature.seqlen,
  42829. feature.md5checksum,
  42830. feature.type_id,
  42831. feature.is_analysis,
  42832. feature.is_obsolete,
  42833. feature.timeaccessioned,
  42834. feature.timelastmodified
  42835. FROM (feature
  42836. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42837. WHERE ((cvterm.name)::text = 'U5_three_prime_LTR_region'::text);
  42838. --
  42839. -- Name: u6_snrna; Type: VIEW; Schema: so; Owner: -
  42840. --
  42841. CREATE VIEW u6_snrna AS
  42842. SELECT feature.feature_id AS u6_snrna_id,
  42843. feature.feature_id,
  42844. feature.dbxref_id,
  42845. feature.organism_id,
  42846. feature.name,
  42847. feature.uniquename,
  42848. feature.residues,
  42849. feature.seqlen,
  42850. feature.md5checksum,
  42851. feature.type_id,
  42852. feature.is_analysis,
  42853. feature.is_obsolete,
  42854. feature.timeaccessioned,
  42855. feature.timelastmodified
  42856. FROM (feature
  42857. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42858. WHERE ((cvterm.name)::text = 'U6_snRNA'::text);
  42859. --
  42860. -- Name: u6atac_snrna; Type: VIEW; Schema: so; Owner: -
  42861. --
  42862. CREATE VIEW u6atac_snrna AS
  42863. SELECT feature.feature_id AS u6atac_snrna_id,
  42864. feature.feature_id,
  42865. feature.dbxref_id,
  42866. feature.organism_id,
  42867. feature.name,
  42868. feature.uniquename,
  42869. feature.residues,
  42870. feature.seqlen,
  42871. feature.md5checksum,
  42872. feature.type_id,
  42873. feature.is_analysis,
  42874. feature.is_obsolete,
  42875. feature.timeaccessioned,
  42876. feature.timelastmodified
  42877. FROM (feature
  42878. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42879. WHERE ((cvterm.name)::text = 'U6atac_snRNA'::text);
  42880. --
  42881. -- Name: u_box; Type: VIEW; Schema: so; Owner: -
  42882. --
  42883. CREATE VIEW u_box AS
  42884. SELECT feature.feature_id AS u_box_id,
  42885. feature.feature_id,
  42886. feature.dbxref_id,
  42887. feature.organism_id,
  42888. feature.name,
  42889. feature.uniquename,
  42890. feature.residues,
  42891. feature.seqlen,
  42892. feature.md5checksum,
  42893. feature.type_id,
  42894. feature.is_analysis,
  42895. feature.is_obsolete,
  42896. feature.timeaccessioned,
  42897. feature.timelastmodified
  42898. FROM (feature
  42899. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42900. WHERE ((cvterm.name)::text = 'U_box'::text);
  42901. --
  42902. -- Name: uaa_stop_codon_signal; Type: VIEW; Schema: so; Owner: -
  42903. --
  42904. CREATE VIEW uaa_stop_codon_signal AS
  42905. SELECT feature.feature_id AS uaa_stop_codon_signal_id,
  42906. feature.feature_id,
  42907. feature.dbxref_id,
  42908. feature.organism_id,
  42909. feature.name,
  42910. feature.uniquename,
  42911. feature.residues,
  42912. feature.seqlen,
  42913. feature.md5checksum,
  42914. feature.type_id,
  42915. feature.is_analysis,
  42916. feature.is_obsolete,
  42917. feature.timeaccessioned,
  42918. feature.timelastmodified
  42919. FROM (feature
  42920. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42921. WHERE ((cvterm.name)::text = 'UAA_stop_codon_signal'::text);
  42922. --
  42923. -- Name: uag_stop_codon_signal; Type: VIEW; Schema: so; Owner: -
  42924. --
  42925. CREATE VIEW uag_stop_codon_signal AS
  42926. SELECT feature.feature_id AS uag_stop_codon_signal_id,
  42927. feature.feature_id,
  42928. feature.dbxref_id,
  42929. feature.organism_id,
  42930. feature.name,
  42931. feature.uniquename,
  42932. feature.residues,
  42933. feature.seqlen,
  42934. feature.md5checksum,
  42935. feature.type_id,
  42936. feature.is_analysis,
  42937. feature.is_obsolete,
  42938. feature.timeaccessioned,
  42939. feature.timelastmodified
  42940. FROM (feature
  42941. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42942. WHERE ((cvterm.name)::text = 'UAG_stop_codon_signal'::text);
  42943. --
  42944. -- Name: uga_stop_codon_signal; Type: VIEW; Schema: so; Owner: -
  42945. --
  42946. CREATE VIEW uga_stop_codon_signal AS
  42947. SELECT feature.feature_id AS uga_stop_codon_signal_id,
  42948. feature.feature_id,
  42949. feature.dbxref_id,
  42950. feature.organism_id,
  42951. feature.name,
  42952. feature.uniquename,
  42953. feature.residues,
  42954. feature.seqlen,
  42955. feature.md5checksum,
  42956. feature.type_id,
  42957. feature.is_analysis,
  42958. feature.is_obsolete,
  42959. feature.timeaccessioned,
  42960. feature.timelastmodified
  42961. FROM (feature
  42962. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42963. WHERE ((cvterm.name)::text = 'UGA_stop_codon_signal'::text);
  42964. --
  42965. -- Name: ultracontig; Type: VIEW; Schema: so; Owner: -
  42966. --
  42967. CREATE VIEW ultracontig AS
  42968. SELECT feature.feature_id AS ultracontig_id,
  42969. feature.feature_id,
  42970. feature.dbxref_id,
  42971. feature.organism_id,
  42972. feature.name,
  42973. feature.uniquename,
  42974. feature.residues,
  42975. feature.seqlen,
  42976. feature.md5checksum,
  42977. feature.type_id,
  42978. feature.is_analysis,
  42979. feature.is_obsolete,
  42980. feature.timeaccessioned,
  42981. feature.timelastmodified
  42982. FROM (feature
  42983. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  42984. WHERE ((cvterm.name)::text = 'ultracontig'::text);
  42985. --
  42986. -- Name: uncharacterised_chromosomal_mutation; Type: VIEW; Schema: so; Owner: -
  42987. --
  42988. CREATE VIEW uncharacterised_chromosomal_mutation AS
  42989. SELECT feature.feature_id AS uncharacterised_chromosomal_mutation_id,
  42990. feature.feature_id,
  42991. feature.dbxref_id,
  42992. feature.organism_id,
  42993. feature.name,
  42994. feature.uniquename,
  42995. feature.residues,
  42996. feature.seqlen,
  42997. feature.md5checksum,
  42998. feature.type_id,
  42999. feature.is_analysis,
  43000. feature.is_obsolete,
  43001. feature.timeaccessioned,
  43002. feature.timelastmodified
  43003. FROM (feature
  43004. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43005. WHERE (((cvterm.name)::text = 'partially_characterised_chromosomal_mutation'::text) OR ((cvterm.name)::text = 'uncharacterised_chromosomal_mutation'::text));
  43006. --
  43007. -- Name: undermodified_hydroxywybutosine; Type: VIEW; Schema: so; Owner: -
  43008. --
  43009. CREATE VIEW undermodified_hydroxywybutosine AS
  43010. SELECT feature.feature_id AS undermodified_hydroxywybutosine_id,
  43011. feature.feature_id,
  43012. feature.dbxref_id,
  43013. feature.organism_id,
  43014. feature.name,
  43015. feature.uniquename,
  43016. feature.residues,
  43017. feature.seqlen,
  43018. feature.md5checksum,
  43019. feature.type_id,
  43020. feature.is_analysis,
  43021. feature.is_obsolete,
  43022. feature.timeaccessioned,
  43023. feature.timelastmodified
  43024. FROM (feature
  43025. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43026. WHERE ((cvterm.name)::text = 'undermodified_hydroxywybutosine'::text);
  43027. --
  43028. -- Name: unedited_region; Type: VIEW; Schema: so; Owner: -
  43029. --
  43030. CREATE VIEW unedited_region AS
  43031. SELECT feature.feature_id AS unedited_region_id,
  43032. feature.feature_id,
  43033. feature.dbxref_id,
  43034. feature.organism_id,
  43035. feature.name,
  43036. feature.uniquename,
  43037. feature.residues,
  43038. feature.seqlen,
  43039. feature.md5checksum,
  43040. feature.type_id,
  43041. feature.is_analysis,
  43042. feature.is_obsolete,
  43043. feature.timeaccessioned,
  43044. feature.timelastmodified
  43045. FROM (feature
  43046. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43047. WHERE ((cvterm.name)::text = 'unedited_region'::text);
  43048. --
  43049. -- Name: unigene_cluster; Type: VIEW; Schema: so; Owner: -
  43050. --
  43051. CREATE VIEW unigene_cluster AS
  43052. SELECT feature.feature_id AS unigene_cluster_id,
  43053. feature.feature_id,
  43054. feature.dbxref_id,
  43055. feature.organism_id,
  43056. feature.name,
  43057. feature.uniquename,
  43058. feature.residues,
  43059. feature.seqlen,
  43060. feature.md5checksum,
  43061. feature.type_id,
  43062. feature.is_analysis,
  43063. feature.is_obsolete,
  43064. feature.timeaccessioned,
  43065. feature.timelastmodified
  43066. FROM (feature
  43067. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43068. WHERE ((cvterm.name)::text = 'unigene_cluster'::text);
  43069. --
  43070. -- Name: uninvert_insert_dup; Type: VIEW; Schema: so; Owner: -
  43071. --
  43072. CREATE VIEW uninvert_insert_dup AS
  43073. SELECT feature.feature_id AS uninvert_insert_dup_id,
  43074. feature.feature_id,
  43075. feature.dbxref_id,
  43076. feature.organism_id,
  43077. feature.name,
  43078. feature.uniquename,
  43079. feature.residues,
  43080. feature.seqlen,
  43081. feature.md5checksum,
  43082. feature.type_id,
  43083. feature.is_analysis,
  43084. feature.is_obsolete,
  43085. feature.timeaccessioned,
  43086. feature.timelastmodified
  43087. FROM (feature
  43088. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43089. WHERE ((cvterm.name)::text = 'uninverted_insertional_duplication'::text);
  43090. --
  43091. -- Name: uninvert_inter_transposition; Type: VIEW; Schema: so; Owner: -
  43092. --
  43093. CREATE VIEW uninvert_inter_transposition AS
  43094. SELECT feature.feature_id AS uninvert_inter_transposition_id,
  43095. feature.feature_id,
  43096. feature.dbxref_id,
  43097. feature.organism_id,
  43098. feature.name,
  43099. feature.uniquename,
  43100. feature.residues,
  43101. feature.seqlen,
  43102. feature.md5checksum,
  43103. feature.type_id,
  43104. feature.is_analysis,
  43105. feature.is_obsolete,
  43106. feature.timeaccessioned,
  43107. feature.timelastmodified
  43108. FROM (feature
  43109. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43110. WHERE ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text);
  43111. --
  43112. -- Name: uninvert_intra_transposition; Type: VIEW; Schema: so; Owner: -
  43113. --
  43114. CREATE VIEW uninvert_intra_transposition AS
  43115. SELECT feature.feature_id AS uninvert_intra_transposition_id,
  43116. feature.feature_id,
  43117. feature.dbxref_id,
  43118. feature.organism_id,
  43119. feature.name,
  43120. feature.uniquename,
  43121. feature.residues,
  43122. feature.seqlen,
  43123. feature.md5checksum,
  43124. feature.type_id,
  43125. feature.is_analysis,
  43126. feature.is_obsolete,
  43127. feature.timeaccessioned,
  43128. feature.timelastmodified
  43129. FROM (feature
  43130. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43131. WHERE ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text);
  43132. --
  43133. -- Name: unique_variant; Type: VIEW; Schema: so; Owner: -
  43134. --
  43135. CREATE VIEW unique_variant AS
  43136. SELECT feature.feature_id AS unique_variant_id,
  43137. feature.feature_id,
  43138. feature.dbxref_id,
  43139. feature.organism_id,
  43140. feature.name,
  43141. feature.uniquename,
  43142. feature.residues,
  43143. feature.seqlen,
  43144. feature.md5checksum,
  43145. feature.type_id,
  43146. feature.is_analysis,
  43147. feature.is_obsolete,
  43148. feature.timeaccessioned,
  43149. feature.timelastmodified
  43150. FROM (feature
  43151. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43152. WHERE ((cvterm.name)::text = 'unique_variant'::text);
  43153. --
  43154. -- Name: unitary_pseudogene; Type: VIEW; Schema: so; Owner: -
  43155. --
  43156. CREATE VIEW unitary_pseudogene AS
  43157. SELECT feature.feature_id AS unitary_pseudogene_id,
  43158. feature.feature_id,
  43159. feature.dbxref_id,
  43160. feature.organism_id,
  43161. feature.name,
  43162. feature.uniquename,
  43163. feature.residues,
  43164. feature.seqlen,
  43165. feature.md5checksum,
  43166. feature.type_id,
  43167. feature.is_analysis,
  43168. feature.is_obsolete,
  43169. feature.timeaccessioned,
  43170. feature.timelastmodified
  43171. FROM (feature
  43172. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43173. WHERE ((cvterm.name)::text = 'unitary_pseudogene'::text);
  43174. --
  43175. -- Name: unorient_insert_dup; Type: VIEW; Schema: so; Owner: -
  43176. --
  43177. CREATE VIEW unorient_insert_dup AS
  43178. SELECT feature.feature_id AS unorient_insert_dup_id,
  43179. feature.feature_id,
  43180. feature.dbxref_id,
  43181. feature.organism_id,
  43182. feature.name,
  43183. feature.uniquename,
  43184. feature.residues,
  43185. feature.seqlen,
  43186. feature.md5checksum,
  43187. feature.type_id,
  43188. feature.is_analysis,
  43189. feature.is_obsolete,
  43190. feature.timeaccessioned,
  43191. feature.timelastmodified
  43192. FROM (feature
  43193. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43194. WHERE ((cvterm.name)::text = 'unoriented_insertional_duplication'::text);
  43195. --
  43196. -- Name: unoriented_interchromosomal_transposition; Type: VIEW; Schema: so; Owner: -
  43197. --
  43198. CREATE VIEW unoriented_interchromosomal_transposition AS
  43199. SELECT feature.feature_id AS unoriented_interchromosomal_transposition_id,
  43200. feature.feature_id,
  43201. feature.dbxref_id,
  43202. feature.organism_id,
  43203. feature.name,
  43204. feature.uniquename,
  43205. feature.residues,
  43206. feature.seqlen,
  43207. feature.md5checksum,
  43208. feature.type_id,
  43209. feature.is_analysis,
  43210. feature.is_obsolete,
  43211. feature.timeaccessioned,
  43212. feature.timelastmodified
  43213. FROM (feature
  43214. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43215. WHERE ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text);
  43216. --
  43217. -- Name: unoriented_intrachromosomal_transposition; Type: VIEW; Schema: so; Owner: -
  43218. --
  43219. CREATE VIEW unoriented_intrachromosomal_transposition AS
  43220. SELECT feature.feature_id AS unoriented_intrachromosomal_transposition_id,
  43221. feature.feature_id,
  43222. feature.dbxref_id,
  43223. feature.organism_id,
  43224. feature.name,
  43225. feature.uniquename,
  43226. feature.residues,
  43227. feature.seqlen,
  43228. feature.md5checksum,
  43229. feature.type_id,
  43230. feature.is_analysis,
  43231. feature.is_obsolete,
  43232. feature.timeaccessioned,
  43233. feature.timelastmodified
  43234. FROM (feature
  43235. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43236. WHERE ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text);
  43237. --
  43238. -- Name: untranslated_region_polycistronic_mrna; Type: VIEW; Schema: so; Owner: -
  43239. --
  43240. CREATE VIEW untranslated_region_polycistronic_mrna AS
  43241. SELECT feature.feature_id AS untranslated_region_polycistronic_mrna_id,
  43242. feature.feature_id,
  43243. feature.dbxref_id,
  43244. feature.organism_id,
  43245. feature.name,
  43246. feature.uniquename,
  43247. feature.residues,
  43248. feature.seqlen,
  43249. feature.md5checksum,
  43250. feature.type_id,
  43251. feature.is_analysis,
  43252. feature.is_obsolete,
  43253. feature.timeaccessioned,
  43254. feature.timelastmodified
  43255. FROM (feature
  43256. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43257. WHERE ((cvterm.name)::text = 'untranslated_region_polycistronic_mRNA'::text);
  43258. --
  43259. -- Name: upd; Type: VIEW; Schema: so; Owner: -
  43260. --
  43261. CREATE VIEW upd AS
  43262. SELECT feature.feature_id AS upd_id,
  43263. feature.feature_id,
  43264. feature.dbxref_id,
  43265. feature.organism_id,
  43266. feature.name,
  43267. feature.uniquename,
  43268. feature.residues,
  43269. feature.seqlen,
  43270. feature.md5checksum,
  43271. feature.type_id,
  43272. feature.is_analysis,
  43273. feature.is_obsolete,
  43274. feature.timeaccessioned,
  43275. feature.timelastmodified
  43276. FROM (feature
  43277. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43278. WHERE ((((cvterm.name)::text = 'maternal_uniparental_disomy'::text) OR ((cvterm.name)::text = 'paternal_uniparental_disomy'::text)) OR ((cvterm.name)::text = 'UPD'::text));
  43279. --
  43280. -- Name: upstream_aug_codon; Type: VIEW; Schema: so; Owner: -
  43281. --
  43282. CREATE VIEW upstream_aug_codon AS
  43283. SELECT feature.feature_id AS upstream_aug_codon_id,
  43284. feature.feature_id,
  43285. feature.dbxref_id,
  43286. feature.organism_id,
  43287. feature.name,
  43288. feature.uniquename,
  43289. feature.residues,
  43290. feature.seqlen,
  43291. feature.md5checksum,
  43292. feature.type_id,
  43293. feature.is_analysis,
  43294. feature.is_obsolete,
  43295. feature.timeaccessioned,
  43296. feature.timelastmodified
  43297. FROM (feature
  43298. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43299. WHERE ((cvterm.name)::text = 'upstream_AUG_codon'::text);
  43300. --
  43301. -- Name: upstream_gene_variant; Type: VIEW; Schema: so; Owner: -
  43302. --
  43303. CREATE VIEW upstream_gene_variant AS
  43304. SELECT feature.feature_id AS upstream_gene_variant_id,
  43305. feature.feature_id,
  43306. feature.dbxref_id,
  43307. feature.organism_id,
  43308. feature.name,
  43309. feature.uniquename,
  43310. feature.residues,
  43311. feature.seqlen,
  43312. feature.md5checksum,
  43313. feature.type_id,
  43314. feature.is_analysis,
  43315. feature.is_obsolete,
  43316. feature.timeaccessioned,
  43317. feature.timelastmodified
  43318. FROM (feature
  43319. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43320. WHERE ((((cvterm.name)::text = '5KB_upstream_variant'::text) OR ((cvterm.name)::text = '2KB_upstream_variant'::text)) OR ((cvterm.name)::text = 'upstream_gene_variant'::text));
  43321. --
  43322. -- Name: uridine_five_oxyacetic_acid; Type: VIEW; Schema: so; Owner: -
  43323. --
  43324. CREATE VIEW uridine_five_oxyacetic_acid AS
  43325. SELECT feature.feature_id AS uridine_five_oxyacetic_acid_id,
  43326. feature.feature_id,
  43327. feature.dbxref_id,
  43328. feature.organism_id,
  43329. feature.name,
  43330. feature.uniquename,
  43331. feature.residues,
  43332. feature.seqlen,
  43333. feature.md5checksum,
  43334. feature.type_id,
  43335. feature.is_analysis,
  43336. feature.is_obsolete,
  43337. feature.timeaccessioned,
  43338. feature.timelastmodified
  43339. FROM (feature
  43340. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43341. WHERE ((cvterm.name)::text = 'uridine_five_oxyacetic_acid'::text);
  43342. --
  43343. -- Name: uridine_five_oxyacetic_acid_methyl_ester; Type: VIEW; Schema: so; Owner: -
  43344. --
  43345. CREATE VIEW uridine_five_oxyacetic_acid_methyl_ester AS
  43346. SELECT feature.feature_id AS uridine_five_oxyacetic_acid_methyl_ester_id,
  43347. feature.feature_id,
  43348. feature.dbxref_id,
  43349. feature.organism_id,
  43350. feature.name,
  43351. feature.uniquename,
  43352. feature.residues,
  43353. feature.seqlen,
  43354. feature.md5checksum,
  43355. feature.type_id,
  43356. feature.is_analysis,
  43357. feature.is_obsolete,
  43358. feature.timeaccessioned,
  43359. feature.timelastmodified
  43360. FROM (feature
  43361. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43362. WHERE ((cvterm.name)::text = 'uridine_five_oxyacetic_acid_methyl_ester'::text);
  43363. --
  43364. -- Name: ust; Type: VIEW; Schema: so; Owner: -
  43365. --
  43366. CREATE VIEW ust AS
  43367. SELECT feature.feature_id AS ust_id,
  43368. feature.feature_id,
  43369. feature.dbxref_id,
  43370. feature.organism_id,
  43371. feature.name,
  43372. feature.uniquename,
  43373. feature.residues,
  43374. feature.seqlen,
  43375. feature.md5checksum,
  43376. feature.type_id,
  43377. feature.is_analysis,
  43378. feature.is_obsolete,
  43379. feature.timeaccessioned,
  43380. feature.timelastmodified
  43381. FROM (feature
  43382. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43383. WHERE ((((cvterm.name)::text = 'three_prime_UST'::text) OR ((cvterm.name)::text = 'five_prime_UST'::text)) OR ((cvterm.name)::text = 'UST'::text));
  43384. --
  43385. -- Name: ust_match; Type: VIEW; Schema: so; Owner: -
  43386. --
  43387. CREATE VIEW ust_match AS
  43388. SELECT feature.feature_id AS ust_match_id,
  43389. feature.feature_id,
  43390. feature.dbxref_id,
  43391. feature.organism_id,
  43392. feature.name,
  43393. feature.uniquename,
  43394. feature.residues,
  43395. feature.seqlen,
  43396. feature.md5checksum,
  43397. feature.type_id,
  43398. feature.is_analysis,
  43399. feature.is_obsolete,
  43400. feature.timeaccessioned,
  43401. feature.timelastmodified
  43402. FROM (feature
  43403. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43404. WHERE ((cvterm.name)::text = 'UST_match'::text);
  43405. --
  43406. -- Name: utr; Type: VIEW; Schema: so; Owner: -
  43407. --
  43408. CREATE VIEW utr AS
  43409. SELECT feature.feature_id AS utr_id,
  43410. feature.feature_id,
  43411. feature.dbxref_id,
  43412. feature.organism_id,
  43413. feature.name,
  43414. feature.uniquename,
  43415. feature.residues,
  43416. feature.seqlen,
  43417. feature.md5checksum,
  43418. feature.type_id,
  43419. feature.is_analysis,
  43420. feature.is_obsolete,
  43421. feature.timeaccessioned,
  43422. feature.timelastmodified
  43423. FROM (feature
  43424. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43425. WHERE ((((((cvterm.name)::text = 'five_prime_UTR'::text) OR ((cvterm.name)::text = 'three_prime_UTR'::text)) OR ((cvterm.name)::text = 'internal_UTR'::text)) OR ((cvterm.name)::text = 'untranslated_region_polycistronic_mRNA'::text)) OR ((cvterm.name)::text = 'UTR'::text));
  43426. --
  43427. -- Name: utr_intron; Type: VIEW; Schema: so; Owner: -
  43428. --
  43429. CREATE VIEW utr_intron AS
  43430. SELECT feature.feature_id AS utr_intron_id,
  43431. feature.feature_id,
  43432. feature.dbxref_id,
  43433. feature.organism_id,
  43434. feature.name,
  43435. feature.uniquename,
  43436. feature.residues,
  43437. feature.seqlen,
  43438. feature.md5checksum,
  43439. feature.type_id,
  43440. feature.is_analysis,
  43441. feature.is_obsolete,
  43442. feature.timeaccessioned,
  43443. feature.timelastmodified
  43444. FROM (feature
  43445. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43446. WHERE ((((cvterm.name)::text = 'five_prime_UTR_intron'::text) OR ((cvterm.name)::text = 'three_prime_UTR_intron'::text)) OR ((cvterm.name)::text = 'UTR_intron'::text));
  43447. --
  43448. -- Name: utr_region; Type: VIEW; Schema: so; Owner: -
  43449. --
  43450. CREATE VIEW utr_region AS
  43451. SELECT feature.feature_id AS utr_region_id,
  43452. feature.feature_id,
  43453. feature.dbxref_id,
  43454. feature.organism_id,
  43455. feature.name,
  43456. feature.uniquename,
  43457. feature.residues,
  43458. feature.seqlen,
  43459. feature.md5checksum,
  43460. feature.type_id,
  43461. feature.is_analysis,
  43462. feature.is_obsolete,
  43463. feature.timeaccessioned,
  43464. feature.timelastmodified
  43465. FROM (feature
  43466. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43467. WHERE ((((((cvterm.name)::text = 'upstream_AUG_codon'::text) OR ((cvterm.name)::text = 'AU_rich_element'::text)) OR ((cvterm.name)::text = 'Bruno_response_element'::text)) OR ((cvterm.name)::text = 'iron_responsive_element'::text)) OR ((cvterm.name)::text = 'UTR_region'::text));
  43468. --
  43469. -- Name: utr_variant; Type: VIEW; Schema: so; Owner: -
  43470. --
  43471. CREATE VIEW utr_variant AS
  43472. SELECT feature.feature_id AS utr_variant_id,
  43473. feature.feature_id,
  43474. feature.dbxref_id,
  43475. feature.organism_id,
  43476. feature.name,
  43477. feature.uniquename,
  43478. feature.residues,
  43479. feature.seqlen,
  43480. feature.md5checksum,
  43481. feature.type_id,
  43482. feature.is_analysis,
  43483. feature.is_obsolete,
  43484. feature.timeaccessioned,
  43485. feature.timelastmodified
  43486. FROM (feature
  43487. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43488. WHERE ((((cvterm.name)::text = '5_prime_UTR_variant'::text) OR ((cvterm.name)::text = '3_prime_UTR_variant'::text)) OR ((cvterm.name)::text = 'UTR_variant'::text));
  43489. --
  43490. -- Name: v_cluster; Type: VIEW; Schema: so; Owner: -
  43491. --
  43492. CREATE VIEW v_cluster AS
  43493. SELECT feature.feature_id AS v_cluster_id,
  43494. feature.feature_id,
  43495. feature.dbxref_id,
  43496. feature.organism_id,
  43497. feature.name,
  43498. feature.uniquename,
  43499. feature.residues,
  43500. feature.seqlen,
  43501. feature.md5checksum,
  43502. feature.type_id,
  43503. feature.is_analysis,
  43504. feature.is_obsolete,
  43505. feature.timeaccessioned,
  43506. feature.timelastmodified
  43507. FROM (feature
  43508. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43509. WHERE ((cvterm.name)::text = 'V_cluster'::text);
  43510. --
  43511. -- Name: v_d_dj_c_cluster; Type: VIEW; Schema: so; Owner: -
  43512. --
  43513. CREATE VIEW v_d_dj_c_cluster AS
  43514. SELECT feature.feature_id AS v_d_dj_c_cluster_id,
  43515. feature.feature_id,
  43516. feature.dbxref_id,
  43517. feature.organism_id,
  43518. feature.name,
  43519. feature.uniquename,
  43520. feature.residues,
  43521. feature.seqlen,
  43522. feature.md5checksum,
  43523. feature.type_id,
  43524. feature.is_analysis,
  43525. feature.is_obsolete,
  43526. feature.timeaccessioned,
  43527. feature.timelastmodified
  43528. FROM (feature
  43529. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43530. WHERE ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text);
  43531. --
  43532. -- Name: v_d_dj_cluster; Type: VIEW; Schema: so; Owner: -
  43533. --
  43534. CREATE VIEW v_d_dj_cluster AS
  43535. SELECT feature.feature_id AS v_d_dj_cluster_id,
  43536. feature.feature_id,
  43537. feature.dbxref_id,
  43538. feature.organism_id,
  43539. feature.name,
  43540. feature.uniquename,
  43541. feature.residues,
  43542. feature.seqlen,
  43543. feature.md5checksum,
  43544. feature.type_id,
  43545. feature.is_analysis,
  43546. feature.is_obsolete,
  43547. feature.timeaccessioned,
  43548. feature.timelastmodified
  43549. FROM (feature
  43550. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43551. WHERE ((cvterm.name)::text = 'V_D_DJ_cluster'::text);
  43552. --
  43553. -- Name: v_d_dj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
  43554. --
  43555. CREATE VIEW v_d_dj_j_c_cluster AS
  43556. SELECT feature.feature_id AS v_d_dj_j_c_cluster_id,
  43557. feature.feature_id,
  43558. feature.dbxref_id,
  43559. feature.organism_id,
  43560. feature.name,
  43561. feature.uniquename,
  43562. feature.residues,
  43563. feature.seqlen,
  43564. feature.md5checksum,
  43565. feature.type_id,
  43566. feature.is_analysis,
  43567. feature.is_obsolete,
  43568. feature.timeaccessioned,
  43569. feature.timelastmodified
  43570. FROM (feature
  43571. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43572. WHERE ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text);
  43573. --
  43574. -- Name: v_d_dj_j_cluster; Type: VIEW; Schema: so; Owner: -
  43575. --
  43576. CREATE VIEW v_d_dj_j_cluster AS
  43577. SELECT feature.feature_id AS v_d_dj_j_cluster_id,
  43578. feature.feature_id,
  43579. feature.dbxref_id,
  43580. feature.organism_id,
  43581. feature.name,
  43582. feature.uniquename,
  43583. feature.residues,
  43584. feature.seqlen,
  43585. feature.md5checksum,
  43586. feature.type_id,
  43587. feature.is_analysis,
  43588. feature.is_obsolete,
  43589. feature.timeaccessioned,
  43590. feature.timelastmodified
  43591. FROM (feature
  43592. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43593. WHERE ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text);
  43594. --
  43595. -- Name: v_d_j_c_cluster; Type: VIEW; Schema: so; Owner: -
  43596. --
  43597. CREATE VIEW v_d_j_c_cluster AS
  43598. SELECT feature.feature_id AS v_d_j_c_cluster_id,
  43599. feature.feature_id,
  43600. feature.dbxref_id,
  43601. feature.organism_id,
  43602. feature.name,
  43603. feature.uniquename,
  43604. feature.residues,
  43605. feature.seqlen,
  43606. feature.md5checksum,
  43607. feature.type_id,
  43608. feature.is_analysis,
  43609. feature.is_obsolete,
  43610. feature.timeaccessioned,
  43611. feature.timelastmodified
  43612. FROM (feature
  43613. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43614. WHERE ((cvterm.name)::text = 'V_D_J_C_cluster'::text);
  43615. --
  43616. -- Name: v_d_j_cluster; Type: VIEW; Schema: so; Owner: -
  43617. --
  43618. CREATE VIEW v_d_j_cluster AS
  43619. SELECT feature.feature_id AS v_d_j_cluster_id,
  43620. feature.feature_id,
  43621. feature.dbxref_id,
  43622. feature.organism_id,
  43623. feature.name,
  43624. feature.uniquename,
  43625. feature.residues,
  43626. feature.seqlen,
  43627. feature.md5checksum,
  43628. feature.type_id,
  43629. feature.is_analysis,
  43630. feature.is_obsolete,
  43631. feature.timeaccessioned,
  43632. feature.timelastmodified
  43633. FROM (feature
  43634. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43635. WHERE ((cvterm.name)::text = 'V_D_J_cluster'::text);
  43636. --
  43637. -- Name: v_dj_c_cluster; Type: VIEW; Schema: so; Owner: -
  43638. --
  43639. CREATE VIEW v_dj_c_cluster AS
  43640. SELECT feature.feature_id AS v_dj_c_cluster_id,
  43641. feature.feature_id,
  43642. feature.dbxref_id,
  43643. feature.organism_id,
  43644. feature.name,
  43645. feature.uniquename,
  43646. feature.residues,
  43647. feature.seqlen,
  43648. feature.md5checksum,
  43649. feature.type_id,
  43650. feature.is_analysis,
  43651. feature.is_obsolete,
  43652. feature.timeaccessioned,
  43653. feature.timelastmodified
  43654. FROM (feature
  43655. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43656. WHERE ((cvterm.name)::text = 'V_DJ_C_cluster'::text);
  43657. --
  43658. -- Name: v_dj_cluster; Type: VIEW; Schema: so; Owner: -
  43659. --
  43660. CREATE VIEW v_dj_cluster AS
  43661. SELECT feature.feature_id AS v_dj_cluster_id,
  43662. feature.feature_id,
  43663. feature.dbxref_id,
  43664. feature.organism_id,
  43665. feature.name,
  43666. feature.uniquename,
  43667. feature.residues,
  43668. feature.seqlen,
  43669. feature.md5checksum,
  43670. feature.type_id,
  43671. feature.is_analysis,
  43672. feature.is_obsolete,
  43673. feature.timeaccessioned,
  43674. feature.timelastmodified
  43675. FROM (feature
  43676. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43677. WHERE ((cvterm.name)::text = 'V_DJ_cluster'::text);
  43678. --
  43679. -- Name: v_dj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
  43680. --
  43681. CREATE VIEW v_dj_j_c_cluster AS
  43682. SELECT feature.feature_id AS v_dj_j_c_cluster_id,
  43683. feature.feature_id,
  43684. feature.dbxref_id,
  43685. feature.organism_id,
  43686. feature.name,
  43687. feature.uniquename,
  43688. feature.residues,
  43689. feature.seqlen,
  43690. feature.md5checksum,
  43691. feature.type_id,
  43692. feature.is_analysis,
  43693. feature.is_obsolete,
  43694. feature.timeaccessioned,
  43695. feature.timelastmodified
  43696. FROM (feature
  43697. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43698. WHERE ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text);
  43699. --
  43700. -- Name: v_dj_j_cluster; Type: VIEW; Schema: so; Owner: -
  43701. --
  43702. CREATE VIEW v_dj_j_cluster AS
  43703. SELECT feature.feature_id AS v_dj_j_cluster_id,
  43704. feature.feature_id,
  43705. feature.dbxref_id,
  43706. feature.organism_id,
  43707. feature.name,
  43708. feature.uniquename,
  43709. feature.residues,
  43710. feature.seqlen,
  43711. feature.md5checksum,
  43712. feature.type_id,
  43713. feature.is_analysis,
  43714. feature.is_obsolete,
  43715. feature.timeaccessioned,
  43716. feature.timelastmodified
  43717. FROM (feature
  43718. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43719. WHERE ((cvterm.name)::text = 'V_DJ_J_cluster'::text);
  43720. --
  43721. -- Name: v_gene; Type: VIEW; Schema: so; Owner: -
  43722. --
  43723. CREATE VIEW v_gene AS
  43724. SELECT feature.feature_id AS v_gene_id,
  43725. feature.feature_id,
  43726. feature.dbxref_id,
  43727. feature.organism_id,
  43728. feature.name,
  43729. feature.uniquename,
  43730. feature.residues,
  43731. feature.seqlen,
  43732. feature.md5checksum,
  43733. feature.type_id,
  43734. feature.is_analysis,
  43735. feature.is_obsolete,
  43736. feature.timeaccessioned,
  43737. feature.timelastmodified
  43738. FROM (feature
  43739. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43740. WHERE ((cvterm.name)::text = 'V_gene'::text);
  43741. --
  43742. -- Name: v_gene_recombination_feature; Type: VIEW; Schema: so; Owner: -
  43743. --
  43744. CREATE VIEW v_gene_recombination_feature AS
  43745. SELECT feature.feature_id AS v_gene_recombination_feature_id,
  43746. feature.feature_id,
  43747. feature.dbxref_id,
  43748. feature.organism_id,
  43749. feature.name,
  43750. feature.uniquename,
  43751. feature.residues,
  43752. feature.seqlen,
  43753. feature.md5checksum,
  43754. feature.type_id,
  43755. feature.is_analysis,
  43756. feature.is_obsolete,
  43757. feature.timeaccessioned,
  43758. feature.timelastmodified
  43759. FROM (feature
  43760. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43761. WHERE ((cvterm.name)::text = 'V_gene_recombination_feature'::text);
  43762. --
  43763. -- Name: v_heptamer; Type: VIEW; Schema: so; Owner: -
  43764. --
  43765. CREATE VIEW v_heptamer AS
  43766. SELECT feature.feature_id AS v_heptamer_id,
  43767. feature.feature_id,
  43768. feature.dbxref_id,
  43769. feature.organism_id,
  43770. feature.name,
  43771. feature.uniquename,
  43772. feature.residues,
  43773. feature.seqlen,
  43774. feature.md5checksum,
  43775. feature.type_id,
  43776. feature.is_analysis,
  43777. feature.is_obsolete,
  43778. feature.timeaccessioned,
  43779. feature.timelastmodified
  43780. FROM (feature
  43781. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43782. WHERE ((cvterm.name)::text = 'V_heptamer'::text);
  43783. --
  43784. -- Name: v_j_c_cluster; Type: VIEW; Schema: so; Owner: -
  43785. --
  43786. CREATE VIEW v_j_c_cluster AS
  43787. SELECT feature.feature_id AS v_j_c_cluster_id,
  43788. feature.feature_id,
  43789. feature.dbxref_id,
  43790. feature.organism_id,
  43791. feature.name,
  43792. feature.uniquename,
  43793. feature.residues,
  43794. feature.seqlen,
  43795. feature.md5checksum,
  43796. feature.type_id,
  43797. feature.is_analysis,
  43798. feature.is_obsolete,
  43799. feature.timeaccessioned,
  43800. feature.timelastmodified
  43801. FROM (feature
  43802. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43803. WHERE ((cvterm.name)::text = 'V_J_C_cluster'::text);
  43804. --
  43805. -- Name: v_j_cluster; Type: VIEW; Schema: so; Owner: -
  43806. --
  43807. CREATE VIEW v_j_cluster AS
  43808. SELECT feature.feature_id AS v_j_cluster_id,
  43809. feature.feature_id,
  43810. feature.dbxref_id,
  43811. feature.organism_id,
  43812. feature.name,
  43813. feature.uniquename,
  43814. feature.residues,
  43815. feature.seqlen,
  43816. feature.md5checksum,
  43817. feature.type_id,
  43818. feature.is_analysis,
  43819. feature.is_obsolete,
  43820. feature.timeaccessioned,
  43821. feature.timelastmodified
  43822. FROM (feature
  43823. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43824. WHERE ((cvterm.name)::text = 'V_J_cluster'::text);
  43825. --
  43826. -- Name: v_nonamer; Type: VIEW; Schema: so; Owner: -
  43827. --
  43828. CREATE VIEW v_nonamer AS
  43829. SELECT feature.feature_id AS v_nonamer_id,
  43830. feature.feature_id,
  43831. feature.dbxref_id,
  43832. feature.organism_id,
  43833. feature.name,
  43834. feature.uniquename,
  43835. feature.residues,
  43836. feature.seqlen,
  43837. feature.md5checksum,
  43838. feature.type_id,
  43839. feature.is_analysis,
  43840. feature.is_obsolete,
  43841. feature.timeaccessioned,
  43842. feature.timelastmodified
  43843. FROM (feature
  43844. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43845. WHERE ((cvterm.name)::text = 'V_nonamer'::text);
  43846. --
  43847. -- Name: v_spacer; Type: VIEW; Schema: so; Owner: -
  43848. --
  43849. CREATE VIEW v_spacer AS
  43850. SELECT feature.feature_id AS v_spacer_id,
  43851. feature.feature_id,
  43852. feature.dbxref_id,
  43853. feature.organism_id,
  43854. feature.name,
  43855. feature.uniquename,
  43856. feature.residues,
  43857. feature.seqlen,
  43858. feature.md5checksum,
  43859. feature.type_id,
  43860. feature.is_analysis,
  43861. feature.is_obsolete,
  43862. feature.timeaccessioned,
  43863. feature.timelastmodified
  43864. FROM (feature
  43865. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43866. WHERE ((cvterm.name)::text = 'V_spacer'::text);
  43867. --
  43868. -- Name: v_vdj_c_cluster; Type: VIEW; Schema: so; Owner: -
  43869. --
  43870. CREATE VIEW v_vdj_c_cluster AS
  43871. SELECT feature.feature_id AS v_vdj_c_cluster_id,
  43872. feature.feature_id,
  43873. feature.dbxref_id,
  43874. feature.organism_id,
  43875. feature.name,
  43876. feature.uniquename,
  43877. feature.residues,
  43878. feature.seqlen,
  43879. feature.md5checksum,
  43880. feature.type_id,
  43881. feature.is_analysis,
  43882. feature.is_obsolete,
  43883. feature.timeaccessioned,
  43884. feature.timelastmodified
  43885. FROM (feature
  43886. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43887. WHERE ((cvterm.name)::text = 'V_VDJ_C_cluster'::text);
  43888. --
  43889. -- Name: v_vdj_cluster; Type: VIEW; Schema: so; Owner: -
  43890. --
  43891. CREATE VIEW v_vdj_cluster AS
  43892. SELECT feature.feature_id AS v_vdj_cluster_id,
  43893. feature.feature_id,
  43894. feature.dbxref_id,
  43895. feature.organism_id,
  43896. feature.name,
  43897. feature.uniquename,
  43898. feature.residues,
  43899. feature.seqlen,
  43900. feature.md5checksum,
  43901. feature.type_id,
  43902. feature.is_analysis,
  43903. feature.is_obsolete,
  43904. feature.timeaccessioned,
  43905. feature.timelastmodified
  43906. FROM (feature
  43907. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43908. WHERE ((cvterm.name)::text = 'V_VDJ_cluster'::text);
  43909. --
  43910. -- Name: v_vdj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
  43911. --
  43912. CREATE VIEW v_vdj_j_c_cluster AS
  43913. SELECT feature.feature_id AS v_vdj_j_c_cluster_id,
  43914. feature.feature_id,
  43915. feature.dbxref_id,
  43916. feature.organism_id,
  43917. feature.name,
  43918. feature.uniquename,
  43919. feature.residues,
  43920. feature.seqlen,
  43921. feature.md5checksum,
  43922. feature.type_id,
  43923. feature.is_analysis,
  43924. feature.is_obsolete,
  43925. feature.timeaccessioned,
  43926. feature.timelastmodified
  43927. FROM (feature
  43928. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43929. WHERE ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text);
  43930. --
  43931. -- Name: v_vdj_j_cluster; Type: VIEW; Schema: so; Owner: -
  43932. --
  43933. CREATE VIEW v_vdj_j_cluster AS
  43934. SELECT feature.feature_id AS v_vdj_j_cluster_id,
  43935. feature.feature_id,
  43936. feature.dbxref_id,
  43937. feature.organism_id,
  43938. feature.name,
  43939. feature.uniquename,
  43940. feature.residues,
  43941. feature.seqlen,
  43942. feature.md5checksum,
  43943. feature.type_id,
  43944. feature.is_analysis,
  43945. feature.is_obsolete,
  43946. feature.timeaccessioned,
  43947. feature.timelastmodified
  43948. FROM (feature
  43949. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43950. WHERE ((cvterm.name)::text = 'V_VDJ_J_cluster'::text);
  43951. --
  43952. -- Name: v_vj_c_cluster; Type: VIEW; Schema: so; Owner: -
  43953. --
  43954. CREATE VIEW v_vj_c_cluster AS
  43955. SELECT feature.feature_id AS v_vj_c_cluster_id,
  43956. feature.feature_id,
  43957. feature.dbxref_id,
  43958. feature.organism_id,
  43959. feature.name,
  43960. feature.uniquename,
  43961. feature.residues,
  43962. feature.seqlen,
  43963. feature.md5checksum,
  43964. feature.type_id,
  43965. feature.is_analysis,
  43966. feature.is_obsolete,
  43967. feature.timeaccessioned,
  43968. feature.timelastmodified
  43969. FROM (feature
  43970. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43971. WHERE ((cvterm.name)::text = 'V_VJ_C_cluster'::text);
  43972. --
  43973. -- Name: v_vj_cluster; Type: VIEW; Schema: so; Owner: -
  43974. --
  43975. CREATE VIEW v_vj_cluster AS
  43976. SELECT feature.feature_id AS v_vj_cluster_id,
  43977. feature.feature_id,
  43978. feature.dbxref_id,
  43979. feature.organism_id,
  43980. feature.name,
  43981. feature.uniquename,
  43982. feature.residues,
  43983. feature.seqlen,
  43984. feature.md5checksum,
  43985. feature.type_id,
  43986. feature.is_analysis,
  43987. feature.is_obsolete,
  43988. feature.timeaccessioned,
  43989. feature.timelastmodified
  43990. FROM (feature
  43991. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  43992. WHERE ((cvterm.name)::text = 'V_VJ_cluster'::text);
  43993. --
  43994. -- Name: v_vj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
  43995. --
  43996. CREATE VIEW v_vj_j_c_cluster AS
  43997. SELECT feature.feature_id AS v_vj_j_c_cluster_id,
  43998. feature.feature_id,
  43999. feature.dbxref_id,
  44000. feature.organism_id,
  44001. feature.name,
  44002. feature.uniquename,
  44003. feature.residues,
  44004. feature.seqlen,
  44005. feature.md5checksum,
  44006. feature.type_id,
  44007. feature.is_analysis,
  44008. feature.is_obsolete,
  44009. feature.timeaccessioned,
  44010. feature.timelastmodified
  44011. FROM (feature
  44012. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44013. WHERE ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text);
  44014. --
  44015. -- Name: v_vj_j_cluster; Type: VIEW; Schema: so; Owner: -
  44016. --
  44017. CREATE VIEW v_vj_j_cluster AS
  44018. SELECT feature.feature_id AS v_vj_j_cluster_id,
  44019. feature.feature_id,
  44020. feature.dbxref_id,
  44021. feature.organism_id,
  44022. feature.name,
  44023. feature.uniquename,
  44024. feature.residues,
  44025. feature.seqlen,
  44026. feature.md5checksum,
  44027. feature.type_id,
  44028. feature.is_analysis,
  44029. feature.is_obsolete,
  44030. feature.timeaccessioned,
  44031. feature.timelastmodified
  44032. FROM (feature
  44033. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44034. WHERE ((cvterm.name)::text = 'V_VJ_J_cluster'::text);
  44035. --
  44036. -- Name: validated; Type: VIEW; Schema: so; Owner: -
  44037. --
  44038. CREATE VIEW validated AS
  44039. SELECT feature.feature_id AS validated_id,
  44040. feature.feature_id,
  44041. feature.dbxref_id,
  44042. feature.organism_id,
  44043. feature.name,
  44044. feature.uniquename,
  44045. feature.residues,
  44046. feature.seqlen,
  44047. feature.md5checksum,
  44048. feature.type_id,
  44049. feature.is_analysis,
  44050. feature.is_obsolete,
  44051. feature.timeaccessioned,
  44052. feature.timelastmodified
  44053. FROM (feature
  44054. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44055. WHERE (((cvterm.name)::text = 'experimentally_determined'::text) OR ((cvterm.name)::text = 'validated'::text));
  44056. --
  44057. -- Name: validated_cdna_clone; Type: VIEW; Schema: so; Owner: -
  44058. --
  44059. CREATE VIEW validated_cdna_clone AS
  44060. SELECT feature.feature_id AS validated_cdna_clone_id,
  44061. feature.feature_id,
  44062. feature.dbxref_id,
  44063. feature.organism_id,
  44064. feature.name,
  44065. feature.uniquename,
  44066. feature.residues,
  44067. feature.seqlen,
  44068. feature.md5checksum,
  44069. feature.type_id,
  44070. feature.is_analysis,
  44071. feature.is_obsolete,
  44072. feature.timeaccessioned,
  44073. feature.timelastmodified
  44074. FROM (feature
  44075. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44076. WHERE ((cvterm.name)::text = 'validated_cDNA_clone'::text);
  44077. --
  44078. -- Name: valine; Type: VIEW; Schema: so; Owner: -
  44079. --
  44080. CREATE VIEW valine AS
  44081. SELECT feature.feature_id AS valine_id,
  44082. feature.feature_id,
  44083. feature.dbxref_id,
  44084. feature.organism_id,
  44085. feature.name,
  44086. feature.uniquename,
  44087. feature.residues,
  44088. feature.seqlen,
  44089. feature.md5checksum,
  44090. feature.type_id,
  44091. feature.is_analysis,
  44092. feature.is_obsolete,
  44093. feature.timeaccessioned,
  44094. feature.timelastmodified
  44095. FROM (feature
  44096. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44097. WHERE ((cvterm.name)::text = 'valine'::text);
  44098. --
  44099. -- Name: valine_trna_primary_transcript; Type: VIEW; Schema: so; Owner: -
  44100. --
  44101. CREATE VIEW valine_trna_primary_transcript AS
  44102. SELECT feature.feature_id AS valine_trna_primary_transcript_id,
  44103. feature.feature_id,
  44104. feature.dbxref_id,
  44105. feature.organism_id,
  44106. feature.name,
  44107. feature.uniquename,
  44108. feature.residues,
  44109. feature.seqlen,
  44110. feature.md5checksum,
  44111. feature.type_id,
  44112. feature.is_analysis,
  44113. feature.is_obsolete,
  44114. feature.timeaccessioned,
  44115. feature.timelastmodified
  44116. FROM (feature
  44117. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44118. WHERE ((cvterm.name)::text = 'valine_tRNA_primary_transcript'::text);
  44119. --
  44120. -- Name: valyl_trna; Type: VIEW; Schema: so; Owner: -
  44121. --
  44122. CREATE VIEW valyl_trna AS
  44123. SELECT feature.feature_id AS valyl_trna_id,
  44124. feature.feature_id,
  44125. feature.dbxref_id,
  44126. feature.organism_id,
  44127. feature.name,
  44128. feature.uniquename,
  44129. feature.residues,
  44130. feature.seqlen,
  44131. feature.md5checksum,
  44132. feature.type_id,
  44133. feature.is_analysis,
  44134. feature.is_obsolete,
  44135. feature.timeaccessioned,
  44136. feature.timelastmodified
  44137. FROM (feature
  44138. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44139. WHERE ((cvterm.name)::text = 'valyl_tRNA'::text);
  44140. --
  44141. -- Name: variant_collection; Type: VIEW; Schema: so; Owner: -
  44142. --
  44143. CREATE VIEW variant_collection AS
  44144. SELECT feature.feature_id AS variant_collection_id,
  44145. feature.feature_id,
  44146. feature.dbxref_id,
  44147. feature.organism_id,
  44148. feature.name,
  44149. feature.uniquename,
  44150. feature.residues,
  44151. feature.seqlen,
  44152. feature.md5checksum,
  44153. feature.type_id,
  44154. feature.is_analysis,
  44155. feature.is_obsolete,
  44156. feature.timeaccessioned,
  44157. feature.timelastmodified
  44158. FROM (feature
  44159. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44160. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'chromosome_variation'::text) OR ((cvterm.name)::text = 'allele'::text)) OR ((cvterm.name)::text = 'haplotype'::text)) OR ((cvterm.name)::text = 'genotype'::text)) OR ((cvterm.name)::text = 'diplotype'::text)) OR ((cvterm.name)::text = 'assortment_derived_variation'::text)) OR ((cvterm.name)::text = 'chromosome_number_variation'::text)) OR ((cvterm.name)::text = 'chromosome_structure_variation'::text)) OR ((cvterm.name)::text = 'assortment_derived_duplication'::text)) OR ((cvterm.name)::text = 'assortment_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'assortment_derived_deficiency'::text)) OR ((cvterm.name)::text = 'assortment_derived_aneuploid'::text)) OR ((cvterm.name)::text = 'aneuploid'::text)) OR ((cvterm.name)::text = 'polyploid'::text)) OR ((cvterm.name)::text = 'hyperploid'::text)) OR ((cvterm.name)::text = 'hypoploid'::text)) OR ((cvterm.name)::text = 'autopolyploid'::text)) OR ((cvterm.name)::text = 'allopolyploid'::text)) OR ((cvterm.name)::text = 'free_chromosome_arm'::text)) OR ((cvterm.name)::text = 'chromosomal_transposition'::text)) OR ((cvterm.name)::text = 'aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'intrachromosomal_mutation'::text)) OR ((cvterm.name)::text = 'interchromosomal_mutation'::text)) OR ((cvterm.name)::text = 'chromosomal_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome'::text)) OR ((cvterm.name)::text = 'autosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'complex_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'uncharacterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_aneuploid_chromosome'::text)) OR ((cvterm.name)::text = 'chromosomal_deletion'::text)) OR ((cvterm.name)::text = 'chromosomal_inversion'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'ring_chromosome'::text)) OR ((cvterm.name)::text = 'chromosome_fission'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_deficiency'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'pericentric_inversion'::text)) OR ((cvterm.name)::text = 'paracentric_inversion'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_inversion'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_ring_chromosome'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'translocation_element'::text)) OR ((cvterm.name)::text = 'Robertsonian_fusion'::text)) OR ((cvterm.name)::text = 'reciprocal_chromosomal_translocation'::text)) OR ((cvterm.name)::text = 'deficient_translocation'::text)) OR ((cvterm.name)::text = 'inversion_cum_translocation'::text)) OR ((cvterm.name)::text = 'cyclic_translocation'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'deficient_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_interchromosomal_transposition'::text)) OR ((cvterm.name)::text = 'interchromosomal_duplication'::text)) OR ((cvterm.name)::text = 'intrachromosomal_duplication'::text)) OR ((cvterm.name)::text = 'free_duplication'::text)) OR ((cvterm.name)::text = 'insertional_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_deficiency_plus_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_bipartite_duplication'::text)) OR ((cvterm.name)::text = 'inversion_derived_duplication_plus_aneuploid'::text)) OR ((cvterm.name)::text = 'intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'bipartite_duplication'::text)) OR ((cvterm.name)::text = 'deficient_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'inverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'uninverted_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'unoriented_intrachromosomal_transposition'::text)) OR ((cvterm.name)::text = 'free_ring_duplication'::text)) OR ((cvterm.name)::text = 'uninverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'inverted_insertional_duplication'::text)) OR ((cvterm.name)::text = 'unoriented_insertional_duplication'::text)) OR ((cvterm.name)::text = 'compound_chromosome_arm'::text)) OR ((cvterm.name)::text = 'homo_compound_chromosome'::text)) OR ((cvterm.name)::text = 'hetero_compound_chromosome'::text)) OR ((cvterm.name)::text = 'dexstrosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'laevosynaptic_chromosome'::text)) OR ((cvterm.name)::text = 'partially_characterised_chromosomal_mutation'::text)) OR ((cvterm.name)::text = 'polymorphic_sequence_variant'::text)) OR ((cvterm.name)::text = 'variant_collection'::text));
  44161. --
  44162. -- Name: variant_frequency; Type: VIEW; Schema: so; Owner: -
  44163. --
  44164. CREATE VIEW variant_frequency AS
  44165. SELECT feature.feature_id AS variant_frequency_id,
  44166. feature.feature_id,
  44167. feature.dbxref_id,
  44168. feature.organism_id,
  44169. feature.name,
  44170. feature.uniquename,
  44171. feature.residues,
  44172. feature.seqlen,
  44173. feature.md5checksum,
  44174. feature.type_id,
  44175. feature.is_analysis,
  44176. feature.is_obsolete,
  44177. feature.timeaccessioned,
  44178. feature.timelastmodified
  44179. FROM (feature
  44180. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44181. WHERE (((((((cvterm.name)::text = 'unique_variant'::text) OR ((cvterm.name)::text = 'rare_variant'::text)) OR ((cvterm.name)::text = 'polymorphic_variant'::text)) OR ((cvterm.name)::text = 'common_variant'::text)) OR ((cvterm.name)::text = 'fixed_variant'::text)) OR ((cvterm.name)::text = 'variant_frequency'::text));
  44182. --
  44183. -- Name: variant_genome; Type: VIEW; Schema: so; Owner: -
  44184. --
  44185. CREATE VIEW variant_genome AS
  44186. SELECT feature.feature_id AS variant_genome_id,
  44187. feature.feature_id,
  44188. feature.dbxref_id,
  44189. feature.organism_id,
  44190. feature.name,
  44191. feature.uniquename,
  44192. feature.residues,
  44193. feature.seqlen,
  44194. feature.md5checksum,
  44195. feature.type_id,
  44196. feature.is_analysis,
  44197. feature.is_obsolete,
  44198. feature.timeaccessioned,
  44199. feature.timelastmodified
  44200. FROM (feature
  44201. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44202. WHERE (((cvterm.name)::text = 'chromosomally_aberrant_genome'::text) OR ((cvterm.name)::text = 'variant_genome'::text));
  44203. --
  44204. -- Name: variant_origin; Type: VIEW; Schema: so; Owner: -
  44205. --
  44206. CREATE VIEW variant_origin AS
  44207. SELECT feature.feature_id AS variant_origin_id,
  44208. feature.feature_id,
  44209. feature.dbxref_id,
  44210. feature.organism_id,
  44211. feature.name,
  44212. feature.uniquename,
  44213. feature.residues,
  44214. feature.seqlen,
  44215. feature.md5checksum,
  44216. feature.type_id,
  44217. feature.is_analysis,
  44218. feature.is_obsolete,
  44219. feature.timeaccessioned,
  44220. feature.timelastmodified
  44221. FROM (feature
  44222. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44223. WHERE (((((((((cvterm.name)::text = 'maternal_variant'::text) OR ((cvterm.name)::text = 'paternal_variant'::text)) OR ((cvterm.name)::text = 'somatic_variant'::text)) OR ((cvterm.name)::text = 'germline_variant'::text)) OR ((cvterm.name)::text = 'pedigree_specific_variant'::text)) OR ((cvterm.name)::text = 'population_specific_variant'::text)) OR ((cvterm.name)::text = 'de_novo_variant'::text)) OR ((cvterm.name)::text = 'variant_origin'::text));
  44224. --
  44225. -- Name: variant_phenotype; Type: VIEW; Schema: so; Owner: -
  44226. --
  44227. CREATE VIEW variant_phenotype AS
  44228. SELECT feature.feature_id AS variant_phenotype_id,
  44229. feature.feature_id,
  44230. feature.dbxref_id,
  44231. feature.organism_id,
  44232. feature.name,
  44233. feature.uniquename,
  44234. feature.residues,
  44235. feature.seqlen,
  44236. feature.md5checksum,
  44237. feature.type_id,
  44238. feature.is_analysis,
  44239. feature.is_obsolete,
  44240. feature.timeaccessioned,
  44241. feature.timelastmodified
  44242. FROM (feature
  44243. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44244. WHERE (((((((cvterm.name)::text = 'benign_variant'::text) OR ((cvterm.name)::text = 'disease_associated_variant'::text)) OR ((cvterm.name)::text = 'disease_causing_variant'::text)) OR ((cvterm.name)::text = 'lethal_variant'::text)) OR ((cvterm.name)::text = 'quantitative_variant'::text)) OR ((cvterm.name)::text = 'variant_phenotype'::text));
  44245. --
  44246. -- Name: variant_quality; Type: VIEW; Schema: so; Owner: -
  44247. --
  44248. CREATE VIEW variant_quality AS
  44249. SELECT feature.feature_id AS variant_quality_id,
  44250. feature.feature_id,
  44251. feature.dbxref_id,
  44252. feature.organism_id,
  44253. feature.name,
  44254. feature.uniquename,
  44255. feature.residues,
  44256. feature.seqlen,
  44257. feature.md5checksum,
  44258. feature.type_id,
  44259. feature.is_analysis,
  44260. feature.is_obsolete,
  44261. feature.timeaccessioned,
  44262. feature.timelastmodified
  44263. FROM (feature
  44264. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44265. WHERE ((((((((((((((((((((((cvterm.name)::text = 'variant_origin'::text) OR ((cvterm.name)::text = 'variant_frequency'::text)) OR ((cvterm.name)::text = 'variant_phenotype'::text)) OR ((cvterm.name)::text = 'maternal_variant'::text)) OR ((cvterm.name)::text = 'paternal_variant'::text)) OR ((cvterm.name)::text = 'somatic_variant'::text)) OR ((cvterm.name)::text = 'germline_variant'::text)) OR ((cvterm.name)::text = 'pedigree_specific_variant'::text)) OR ((cvterm.name)::text = 'population_specific_variant'::text)) OR ((cvterm.name)::text = 'de_novo_variant'::text)) OR ((cvterm.name)::text = 'unique_variant'::text)) OR ((cvterm.name)::text = 'rare_variant'::text)) OR ((cvterm.name)::text = 'polymorphic_variant'::text)) OR ((cvterm.name)::text = 'common_variant'::text)) OR ((cvterm.name)::text = 'fixed_variant'::text)) OR ((cvterm.name)::text = 'benign_variant'::text)) OR ((cvterm.name)::text = 'disease_associated_variant'::text)) OR ((cvterm.name)::text = 'disease_causing_variant'::text)) OR ((cvterm.name)::text = 'lethal_variant'::text)) OR ((cvterm.name)::text = 'quantitative_variant'::text)) OR ((cvterm.name)::text = 'variant_quality'::text));
  44266. --
  44267. -- Name: vault_rna; Type: VIEW; Schema: so; Owner: -
  44268. --
  44269. CREATE VIEW vault_rna AS
  44270. SELECT feature.feature_id AS vault_rna_id,
  44271. feature.feature_id,
  44272. feature.dbxref_id,
  44273. feature.organism_id,
  44274. feature.name,
  44275. feature.uniquename,
  44276. feature.residues,
  44277. feature.seqlen,
  44278. feature.md5checksum,
  44279. feature.type_id,
  44280. feature.is_analysis,
  44281. feature.is_obsolete,
  44282. feature.timeaccessioned,
  44283. feature.timelastmodified
  44284. FROM (feature
  44285. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44286. WHERE ((cvterm.name)::text = 'vault_RNA'::text);
  44287. --
  44288. -- Name: vd_gene; Type: VIEW; Schema: so; Owner: -
  44289. --
  44290. CREATE VIEW vd_gene AS
  44291. SELECT feature.feature_id AS vd_gene_id,
  44292. feature.feature_id,
  44293. feature.dbxref_id,
  44294. feature.organism_id,
  44295. feature.name,
  44296. feature.uniquename,
  44297. feature.residues,
  44298. feature.seqlen,
  44299. feature.md5checksum,
  44300. feature.type_id,
  44301. feature.is_analysis,
  44302. feature.is_obsolete,
  44303. feature.timeaccessioned,
  44304. feature.timelastmodified
  44305. FROM (feature
  44306. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44307. WHERE ((cvterm.name)::text = 'VD_gene'::text);
  44308. --
  44309. -- Name: vdj_c_cluster; Type: VIEW; Schema: so; Owner: -
  44310. --
  44311. CREATE VIEW vdj_c_cluster AS
  44312. SELECT feature.feature_id AS vdj_c_cluster_id,
  44313. feature.feature_id,
  44314. feature.dbxref_id,
  44315. feature.organism_id,
  44316. feature.name,
  44317. feature.uniquename,
  44318. feature.residues,
  44319. feature.seqlen,
  44320. feature.md5checksum,
  44321. feature.type_id,
  44322. feature.is_analysis,
  44323. feature.is_obsolete,
  44324. feature.timeaccessioned,
  44325. feature.timelastmodified
  44326. FROM (feature
  44327. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44328. WHERE ((cvterm.name)::text = 'VDJ_C_cluster'::text);
  44329. --
  44330. -- Name: vdj_gene; Type: VIEW; Schema: so; Owner: -
  44331. --
  44332. CREATE VIEW vdj_gene AS
  44333. SELECT feature.feature_id AS vdj_gene_id,
  44334. feature.feature_id,
  44335. feature.dbxref_id,
  44336. feature.organism_id,
  44337. feature.name,
  44338. feature.uniquename,
  44339. feature.residues,
  44340. feature.seqlen,
  44341. feature.md5checksum,
  44342. feature.type_id,
  44343. feature.is_analysis,
  44344. feature.is_obsolete,
  44345. feature.timeaccessioned,
  44346. feature.timelastmodified
  44347. FROM (feature
  44348. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44349. WHERE ((cvterm.name)::text = 'VDJ_gene'::text);
  44350. --
  44351. -- Name: vdj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
  44352. --
  44353. CREATE VIEW vdj_j_c_cluster AS
  44354. SELECT feature.feature_id AS vdj_j_c_cluster_id,
  44355. feature.feature_id,
  44356. feature.dbxref_id,
  44357. feature.organism_id,
  44358. feature.name,
  44359. feature.uniquename,
  44360. feature.residues,
  44361. feature.seqlen,
  44362. feature.md5checksum,
  44363. feature.type_id,
  44364. feature.is_analysis,
  44365. feature.is_obsolete,
  44366. feature.timeaccessioned,
  44367. feature.timelastmodified
  44368. FROM (feature
  44369. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44370. WHERE ((cvterm.name)::text = 'VDJ_J_C_cluster'::text);
  44371. --
  44372. -- Name: vdj_j_cluster; Type: VIEW; Schema: so; Owner: -
  44373. --
  44374. CREATE VIEW vdj_j_cluster AS
  44375. SELECT feature.feature_id AS vdj_j_cluster_id,
  44376. feature.feature_id,
  44377. feature.dbxref_id,
  44378. feature.organism_id,
  44379. feature.name,
  44380. feature.uniquename,
  44381. feature.residues,
  44382. feature.seqlen,
  44383. feature.md5checksum,
  44384. feature.type_id,
  44385. feature.is_analysis,
  44386. feature.is_obsolete,
  44387. feature.timeaccessioned,
  44388. feature.timelastmodified
  44389. FROM (feature
  44390. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44391. WHERE ((cvterm.name)::text = 'VDJ_J_cluster'::text);
  44392. --
  44393. -- Name: vector_replicon; Type: VIEW; Schema: so; Owner: -
  44394. --
  44395. CREATE VIEW vector_replicon AS
  44396. SELECT feature.feature_id AS vector_replicon_id,
  44397. feature.feature_id,
  44398. feature.dbxref_id,
  44399. feature.organism_id,
  44400. feature.name,
  44401. feature.uniquename,
  44402. feature.residues,
  44403. feature.seqlen,
  44404. feature.md5checksum,
  44405. feature.type_id,
  44406. feature.is_analysis,
  44407. feature.is_obsolete,
  44408. feature.timeaccessioned,
  44409. feature.timelastmodified
  44410. FROM (feature
  44411. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44412. WHERE (((((((((((cvterm.name)::text = 'YAC'::text) OR ((cvterm.name)::text = 'BAC'::text)) OR ((cvterm.name)::text = 'PAC'::text)) OR ((cvterm.name)::text = 'cosmid'::text)) OR ((cvterm.name)::text = 'phagemid'::text)) OR ((cvterm.name)::text = 'fosmid'::text)) OR ((cvterm.name)::text = 'lambda_vector'::text)) OR ((cvterm.name)::text = 'plasmid_vector'::text)) OR ((cvterm.name)::text = 'targeting_vector'::text)) OR ((cvterm.name)::text = 'vector_replicon'::text));
  44413. --
  44414. -- Name: vertebrate_ig_t_cell_receptor_rearranged_gene_cluster; Type: VIEW; Schema: so; Owner: -
  44415. --
  44416. CREATE VIEW vertebrate_ig_t_cell_receptor_rearranged_gene_cluster AS
  44417. SELECT feature.feature_id AS vertebrate_ig_t_cell_receptor_rearranged_gene_cluster_id,
  44418. feature.feature_id,
  44419. feature.dbxref_id,
  44420. feature.organism_id,
  44421. feature.name,
  44422. feature.uniquename,
  44423. feature.residues,
  44424. feature.seqlen,
  44425. feature.md5checksum,
  44426. feature.type_id,
  44427. feature.is_analysis,
  44428. feature.is_obsolete,
  44429. feature.timeaccessioned,
  44430. feature.timelastmodified
  44431. FROM (feature
  44432. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44433. WHERE (((((((((((((((((((((((((((((((((cvterm.name)::text = 'DJ_J_cluster'::text) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text));
  44434. --
  44435. -- Name: vertebrate_immune_system_gene_recombination_feature; Type: VIEW; Schema: so; Owner: -
  44436. --
  44437. CREATE VIEW vertebrate_immune_system_gene_recombination_feature AS
  44438. SELECT feature.feature_id AS vertebrate_immune_system_gene_recombination_feature_id,
  44439. feature.feature_id,
  44440. feature.dbxref_id,
  44441. feature.organism_id,
  44442. feature.name,
  44443. feature.uniquename,
  44444. feature.residues,
  44445. feature.seqlen,
  44446. feature.md5checksum,
  44447. feature.type_id,
  44448. feature.is_analysis,
  44449. feature.is_obsolete,
  44450. feature.timeaccessioned,
  44451. feature.timelastmodified
  44452. FROM (feature
  44453. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44454. WHERE (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text)) OR ((cvterm.name)::text = 'D_gene'::text)) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'three_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'VD_gene'::text)) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_DJ_J_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_D_J_cluster'::text)) OR ((cvterm.name)::text = 'DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'VDJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_C_cluster'::text)) OR ((cvterm.name)::text = 'V_DJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VDJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'V_VJ_J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_feature'::text));
  44455. --
  44456. -- Name: vertebrate_immune_system_gene_recombination_signal_feature; Type: VIEW; Schema: so; Owner: -
  44457. --
  44458. CREATE VIEW vertebrate_immune_system_gene_recombination_signal_feature AS
  44459. SELECT feature.feature_id AS vertebrate_immune_system_gene_recombination_signal_feature_id,
  44460. feature.feature_id,
  44461. feature.dbxref_id,
  44462. feature.organism_id,
  44463. feature.name,
  44464. feature.uniquename,
  44465. feature.residues,
  44466. feature.seqlen,
  44467. feature.md5checksum,
  44468. feature.type_id,
  44469. feature.is_analysis,
  44470. feature.is_obsolete,
  44471. feature.timeaccessioned,
  44472. feature.timelastmodified
  44473. FROM (feature
  44474. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44475. WHERE (((((((((((((((((cvterm.name)::text = 'J_gene_recombination_feature'::text) OR ((cvterm.name)::text = 'D_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'V_gene_recombination_feature'::text)) OR ((cvterm.name)::text = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene'::text)) OR ((cvterm.name)::text = 'five_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_recombination_signal_sequence'::text)) OR ((cvterm.name)::text = 'three_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_heptamer'::text)) OR ((cvterm.name)::text = 'J_heptamer'::text)) OR ((cvterm.name)::text = 'V_heptamer'::text)) OR ((cvterm.name)::text = 'three_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'five_prime_D_nonamer'::text)) OR ((cvterm.name)::text = 'J_nonamer'::text)) OR ((cvterm.name)::text = 'V_nonamer'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_signal_feature'::text));
  44476. --
  44477. -- Name: vertebrate_immune_system_gene_recombination_spacer; Type: VIEW; Schema: so; Owner: -
  44478. --
  44479. CREATE VIEW vertebrate_immune_system_gene_recombination_spacer AS
  44480. SELECT feature.feature_id AS vertebrate_immune_system_gene_recombination_spacer_id,
  44481. feature.feature_id,
  44482. feature.dbxref_id,
  44483. feature.organism_id,
  44484. feature.name,
  44485. feature.uniquename,
  44486. feature.residues,
  44487. feature.seqlen,
  44488. feature.md5checksum,
  44489. feature.type_id,
  44490. feature.is_analysis,
  44491. feature.is_obsolete,
  44492. feature.timeaccessioned,
  44493. feature.timelastmodified
  44494. FROM (feature
  44495. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44496. WHERE ((((((cvterm.name)::text = 'three_prime_D_spacer'::text) OR ((cvterm.name)::text = 'five_prime_D_spacer'::text)) OR ((cvterm.name)::text = 'J_spacer'::text)) OR ((cvterm.name)::text = 'V_spacer'::text)) OR ((cvterm.name)::text = 'vertebrate_immune_system_gene_recombination_spacer'::text));
  44497. --
  44498. -- Name: vertebrate_immunoglobulin_t_cell_receptor_gene_cluster; Type: VIEW; Schema: so; Owner: -
  44499. --
  44500. CREATE VIEW vertebrate_immunoglobulin_t_cell_receptor_gene_cluster AS
  44501. SELECT feature.feature_id AS vertebrate_immunoglobulin_t_cell_receptor_gene_cluster_id,
  44502. feature.feature_id,
  44503. feature.dbxref_id,
  44504. feature.organism_id,
  44505. feature.name,
  44506. feature.uniquename,
  44507. feature.residues,
  44508. feature.seqlen,
  44509. feature.md5checksum,
  44510. feature.type_id,
  44511. feature.is_analysis,
  44512. feature.is_obsolete,
  44513. feature.timeaccessioned,
  44514. feature.timelastmodified
  44515. FROM (feature
  44516. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44517. WHERE (((((((((((cvterm.name)::text = 'D_J_C_cluster'::text) OR ((cvterm.name)::text = 'J_C_cluster'::text)) OR ((cvterm.name)::text = 'J_cluster'::text)) OR ((cvterm.name)::text = 'V_cluster'::text)) OR ((cvterm.name)::text = 'V_J_cluster'::text)) OR ((cvterm.name)::text = 'V_J_C_cluster'::text)) OR ((cvterm.name)::text = 'C_cluster'::text)) OR ((cvterm.name)::text = 'D_cluster'::text)) OR ((cvterm.name)::text = 'D_J_cluster'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster'::text));
  44518. --
  44519. -- Name: vertebrate_immunoglobulin_t_cell_receptor_rearranged_segment; Type: VIEW; Schema: so; Owner: -
  44520. --
  44521. CREATE VIEW vertebrate_immunoglobulin_t_cell_receptor_rearranged_segment AS
  44522. SELECT feature.feature_id AS vertebrate_immunoglobulin_t_cell_receptor_rearranged_segment_id,
  44523. feature.feature_id,
  44524. feature.dbxref_id,
  44525. feature.organism_id,
  44526. feature.name,
  44527. feature.uniquename,
  44528. feature.residues,
  44529. feature.seqlen,
  44530. feature.md5checksum,
  44531. feature.type_id,
  44532. feature.is_analysis,
  44533. feature.is_obsolete,
  44534. feature.timeaccessioned,
  44535. feature.timelastmodified
  44536. FROM (feature
  44537. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44538. WHERE ((((((cvterm.name)::text = 'VD_gene'::text) OR ((cvterm.name)::text = 'DJ_gene'::text)) OR ((cvterm.name)::text = 'VDJ_gene'::text)) OR ((cvterm.name)::text = 'VJ_gene'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment'::text));
  44539. --
  44540. -- Name: vertebrate_immunoglobulin_t_cell_receptor_segment; Type: VIEW; Schema: so; Owner: -
  44541. --
  44542. CREATE VIEW vertebrate_immunoglobulin_t_cell_receptor_segment AS
  44543. SELECT feature.feature_id AS vertebrate_immunoglobulin_t_cell_receptor_segment_id,
  44544. feature.feature_id,
  44545. feature.dbxref_id,
  44546. feature.organism_id,
  44547. feature.name,
  44548. feature.uniquename,
  44549. feature.residues,
  44550. feature.seqlen,
  44551. feature.md5checksum,
  44552. feature.type_id,
  44553. feature.is_analysis,
  44554. feature.is_obsolete,
  44555. feature.timeaccessioned,
  44556. feature.timelastmodified
  44557. FROM (feature
  44558. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44559. WHERE ((((((cvterm.name)::text = 'D_gene'::text) OR ((cvterm.name)::text = 'V_gene'::text)) OR ((cvterm.name)::text = 'J_gene'::text)) OR ((cvterm.name)::text = 'C_gene'::text)) OR ((cvterm.name)::text = 'vertebrate_immunoglobulin_T_cell_receptor_segment'::text));
  44560. --
  44561. -- Name: viral_sequence; Type: VIEW; Schema: so; Owner: -
  44562. --
  44563. CREATE VIEW viral_sequence AS
  44564. SELECT feature.feature_id AS viral_sequence_id,
  44565. feature.feature_id,
  44566. feature.dbxref_id,
  44567. feature.organism_id,
  44568. feature.name,
  44569. feature.uniquename,
  44570. feature.residues,
  44571. feature.seqlen,
  44572. feature.md5checksum,
  44573. feature.type_id,
  44574. feature.is_analysis,
  44575. feature.is_obsolete,
  44576. feature.timeaccessioned,
  44577. feature.timelastmodified
  44578. FROM (feature
  44579. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44580. WHERE (((((((((cvterm.name)::text = 'phage_sequence'::text) OR ((cvterm.name)::text = 'ds_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ds_DNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ss_RNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'negative_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'positive_sense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'ambisense_ssRNA_viral_sequence'::text)) OR ((cvterm.name)::text = 'viral_sequence'::text));
  44581. --
  44582. -- Name: virtual_sequence; Type: VIEW; Schema: so; Owner: -
  44583. --
  44584. CREATE VIEW virtual_sequence AS
  44585. SELECT feature.feature_id AS virtual_sequence_id,
  44586. feature.feature_id,
  44587. feature.dbxref_id,
  44588. feature.organism_id,
  44589. feature.name,
  44590. feature.uniquename,
  44591. feature.residues,
  44592. feature.seqlen,
  44593. feature.md5checksum,
  44594. feature.type_id,
  44595. feature.is_analysis,
  44596. feature.is_obsolete,
  44597. feature.timeaccessioned,
  44598. feature.timelastmodified
  44599. FROM (feature
  44600. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44601. WHERE ((cvterm.name)::text = 'virtual_sequence'::text);
  44602. --
  44603. -- Name: vj_c_cluster; Type: VIEW; Schema: so; Owner: -
  44604. --
  44605. CREATE VIEW vj_c_cluster AS
  44606. SELECT feature.feature_id AS vj_c_cluster_id,
  44607. feature.feature_id,
  44608. feature.dbxref_id,
  44609. feature.organism_id,
  44610. feature.name,
  44611. feature.uniquename,
  44612. feature.residues,
  44613. feature.seqlen,
  44614. feature.md5checksum,
  44615. feature.type_id,
  44616. feature.is_analysis,
  44617. feature.is_obsolete,
  44618. feature.timeaccessioned,
  44619. feature.timelastmodified
  44620. FROM (feature
  44621. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44622. WHERE ((cvterm.name)::text = 'VJ_C_cluster'::text);
  44623. --
  44624. -- Name: vj_gene; Type: VIEW; Schema: so; Owner: -
  44625. --
  44626. CREATE VIEW vj_gene AS
  44627. SELECT feature.feature_id AS vj_gene_id,
  44628. feature.feature_id,
  44629. feature.dbxref_id,
  44630. feature.organism_id,
  44631. feature.name,
  44632. feature.uniquename,
  44633. feature.residues,
  44634. feature.seqlen,
  44635. feature.md5checksum,
  44636. feature.type_id,
  44637. feature.is_analysis,
  44638. feature.is_obsolete,
  44639. feature.timeaccessioned,
  44640. feature.timelastmodified
  44641. FROM (feature
  44642. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44643. WHERE ((cvterm.name)::text = 'VJ_gene'::text);
  44644. --
  44645. -- Name: vj_j_c_cluster; Type: VIEW; Schema: so; Owner: -
  44646. --
  44647. CREATE VIEW vj_j_c_cluster AS
  44648. SELECT feature.feature_id AS vj_j_c_cluster_id,
  44649. feature.feature_id,
  44650. feature.dbxref_id,
  44651. feature.organism_id,
  44652. feature.name,
  44653. feature.uniquename,
  44654. feature.residues,
  44655. feature.seqlen,
  44656. feature.md5checksum,
  44657. feature.type_id,
  44658. feature.is_analysis,
  44659. feature.is_obsolete,
  44660. feature.timeaccessioned,
  44661. feature.timelastmodified
  44662. FROM (feature
  44663. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44664. WHERE ((cvterm.name)::text = 'VJ_J_C_cluster'::text);
  44665. --
  44666. -- Name: vj_j_cluster; Type: VIEW; Schema: so; Owner: -
  44667. --
  44668. CREATE VIEW vj_j_cluster AS
  44669. SELECT feature.feature_id AS vj_j_cluster_id,
  44670. feature.feature_id,
  44671. feature.dbxref_id,
  44672. feature.organism_id,
  44673. feature.name,
  44674. feature.uniquename,
  44675. feature.residues,
  44676. feature.seqlen,
  44677. feature.md5checksum,
  44678. feature.type_id,
  44679. feature.is_analysis,
  44680. feature.is_obsolete,
  44681. feature.timeaccessioned,
  44682. feature.timelastmodified
  44683. FROM (feature
  44684. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44685. WHERE ((cvterm.name)::text = 'VJ_J_cluster'::text);
  44686. --
  44687. -- Name: wc_base_pair; Type: VIEW; Schema: so; Owner: -
  44688. --
  44689. CREATE VIEW wc_base_pair AS
  44690. SELECT feature.feature_id AS wc_base_pair_id,
  44691. feature.feature_id,
  44692. feature.dbxref_id,
  44693. feature.organism_id,
  44694. feature.name,
  44695. feature.uniquename,
  44696. feature.residues,
  44697. feature.seqlen,
  44698. feature.md5checksum,
  44699. feature.type_id,
  44700. feature.is_analysis,
  44701. feature.is_obsolete,
  44702. feature.timeaccessioned,
  44703. feature.timelastmodified
  44704. FROM (feature
  44705. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44706. WHERE ((cvterm.name)::text = 'WC_base_pair'::text);
  44707. --
  44708. -- Name: whole_genome_sequence_status; Type: VIEW; Schema: so; Owner: -
  44709. --
  44710. CREATE VIEW whole_genome_sequence_status AS
  44711. SELECT feature.feature_id AS whole_genome_sequence_status_id,
  44712. feature.feature_id,
  44713. feature.dbxref_id,
  44714. feature.organism_id,
  44715. feature.name,
  44716. feature.uniquename,
  44717. feature.residues,
  44718. feature.seqlen,
  44719. feature.md5checksum,
  44720. feature.type_id,
  44721. feature.is_analysis,
  44722. feature.is_obsolete,
  44723. feature.timeaccessioned,
  44724. feature.timelastmodified
  44725. FROM (feature
  44726. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44727. WHERE ((((((((cvterm.name)::text = 'standard_draft'::text) OR ((cvterm.name)::text = 'high_quality_draft'::text)) OR ((cvterm.name)::text = 'improved_high_quality_draft'::text)) OR ((cvterm.name)::text = 'annotation_directed_improved_draft'::text)) OR ((cvterm.name)::text = 'noncontiguous_finished'::text)) OR ((cvterm.name)::text = 'finished_genome'::text)) OR ((cvterm.name)::text = 'whole_genome_sequence_status'::text));
  44728. --
  44729. -- Name: wild_type; Type: VIEW; Schema: so; Owner: -
  44730. --
  44731. CREATE VIEW wild_type AS
  44732. SELECT feature.feature_id AS wild_type_id,
  44733. feature.feature_id,
  44734. feature.dbxref_id,
  44735. feature.organism_id,
  44736. feature.name,
  44737. feature.uniquename,
  44738. feature.residues,
  44739. feature.seqlen,
  44740. feature.md5checksum,
  44741. feature.type_id,
  44742. feature.is_analysis,
  44743. feature.is_obsolete,
  44744. feature.timeaccessioned,
  44745. feature.timelastmodified
  44746. FROM (feature
  44747. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44748. WHERE ((cvterm.name)::text = 'wild_type'::text);
  44749. --
  44750. -- Name: wild_type_rescue_gene; Type: VIEW; Schema: so; Owner: -
  44751. --
  44752. CREATE VIEW wild_type_rescue_gene AS
  44753. SELECT feature.feature_id AS wild_type_rescue_gene_id,
  44754. feature.feature_id,
  44755. feature.dbxref_id,
  44756. feature.organism_id,
  44757. feature.name,
  44758. feature.uniquename,
  44759. feature.residues,
  44760. feature.seqlen,
  44761. feature.md5checksum,
  44762. feature.type_id,
  44763. feature.is_analysis,
  44764. feature.is_obsolete,
  44765. feature.timeaccessioned,
  44766. feature.timelastmodified
  44767. FROM (feature
  44768. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44769. WHERE ((cvterm.name)::text = 'wild_type_rescue_gene'::text);
  44770. --
  44771. -- Name: wobble_base_pair; Type: VIEW; Schema: so; Owner: -
  44772. --
  44773. CREATE VIEW wobble_base_pair AS
  44774. SELECT feature.feature_id AS wobble_base_pair_id,
  44775. feature.feature_id,
  44776. feature.dbxref_id,
  44777. feature.organism_id,
  44778. feature.name,
  44779. feature.uniquename,
  44780. feature.residues,
  44781. feature.seqlen,
  44782. feature.md5checksum,
  44783. feature.type_id,
  44784. feature.is_analysis,
  44785. feature.is_obsolete,
  44786. feature.timeaccessioned,
  44787. feature.timelastmodified
  44788. FROM (feature
  44789. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44790. WHERE ((cvterm.name)::text = 'wobble_base_pair'::text);
  44791. --
  44792. -- Name: wybutosine; Type: VIEW; Schema: so; Owner: -
  44793. --
  44794. CREATE VIEW wybutosine AS
  44795. SELECT feature.feature_id AS wybutosine_id,
  44796. feature.feature_id,
  44797. feature.dbxref_id,
  44798. feature.organism_id,
  44799. feature.name,
  44800. feature.uniquename,
  44801. feature.residues,
  44802. feature.seqlen,
  44803. feature.md5checksum,
  44804. feature.type_id,
  44805. feature.is_analysis,
  44806. feature.is_obsolete,
  44807. feature.timeaccessioned,
  44808. feature.timelastmodified
  44809. FROM (feature
  44810. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44811. WHERE ((cvterm.name)::text = 'wybutosine'::text);
  44812. --
  44813. -- Name: wyosine; Type: VIEW; Schema: so; Owner: -
  44814. --
  44815. CREATE VIEW wyosine AS
  44816. SELECT feature.feature_id AS wyosine_id,
  44817. feature.feature_id,
  44818. feature.dbxref_id,
  44819. feature.organism_id,
  44820. feature.name,
  44821. feature.uniquename,
  44822. feature.residues,
  44823. feature.seqlen,
  44824. feature.md5checksum,
  44825. feature.type_id,
  44826. feature.is_analysis,
  44827. feature.is_obsolete,
  44828. feature.timeaccessioned,
  44829. feature.timelastmodified
  44830. FROM (feature
  44831. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44832. WHERE ((cvterm.name)::text = 'wyosine'::text);
  44833. --
  44834. -- Name: x_element; Type: VIEW; Schema: so; Owner: -
  44835. --
  44836. CREATE VIEW x_element AS
  44837. SELECT feature.feature_id AS x_element_id,
  44838. feature.feature_id,
  44839. feature.dbxref_id,
  44840. feature.organism_id,
  44841. feature.name,
  44842. feature.uniquename,
  44843. feature.residues,
  44844. feature.seqlen,
  44845. feature.md5checksum,
  44846. feature.type_id,
  44847. feature.is_analysis,
  44848. feature.is_obsolete,
  44849. feature.timeaccessioned,
  44850. feature.timelastmodified
  44851. FROM (feature
  44852. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44853. WHERE ((cvterm.name)::text = 'X_element'::text);
  44854. --
  44855. -- Name: x_element_combinatorial_repeat; Type: VIEW; Schema: so; Owner: -
  44856. --
  44857. CREATE VIEW x_element_combinatorial_repeat AS
  44858. SELECT feature.feature_id AS x_element_combinatorial_repeat_id,
  44859. feature.feature_id,
  44860. feature.dbxref_id,
  44861. feature.organism_id,
  44862. feature.name,
  44863. feature.uniquename,
  44864. feature.residues,
  44865. feature.seqlen,
  44866. feature.md5checksum,
  44867. feature.type_id,
  44868. feature.is_analysis,
  44869. feature.is_obsolete,
  44870. feature.timeaccessioned,
  44871. feature.timelastmodified
  44872. FROM (feature
  44873. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44874. WHERE ((cvterm.name)::text = 'X_element_combinatorial_repeat'::text);
  44875. --
  44876. -- Name: y_prime_element; Type: VIEW; Schema: so; Owner: -
  44877. --
  44878. CREATE VIEW y_prime_element AS
  44879. SELECT feature.feature_id AS y_prime_element_id,
  44880. feature.feature_id,
  44881. feature.dbxref_id,
  44882. feature.organism_id,
  44883. feature.name,
  44884. feature.uniquename,
  44885. feature.residues,
  44886. feature.seqlen,
  44887. feature.md5checksum,
  44888. feature.type_id,
  44889. feature.is_analysis,
  44890. feature.is_obsolete,
  44891. feature.timeaccessioned,
  44892. feature.timelastmodified
  44893. FROM (feature
  44894. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44895. WHERE ((cvterm.name)::text = 'Y_prime_element'::text);
  44896. --
  44897. -- Name: y_rna; Type: VIEW; Schema: so; Owner: -
  44898. --
  44899. CREATE VIEW y_rna AS
  44900. SELECT feature.feature_id AS y_rna_id,
  44901. feature.feature_id,
  44902. feature.dbxref_id,
  44903. feature.organism_id,
  44904. feature.name,
  44905. feature.uniquename,
  44906. feature.residues,
  44907. feature.seqlen,
  44908. feature.md5checksum,
  44909. feature.type_id,
  44910. feature.is_analysis,
  44911. feature.is_obsolete,
  44912. feature.timeaccessioned,
  44913. feature.timelastmodified
  44914. FROM (feature
  44915. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44916. WHERE ((cvterm.name)::text = 'Y_RNA'::text);
  44917. --
  44918. -- Name: yac; Type: VIEW; Schema: so; Owner: -
  44919. --
  44920. CREATE VIEW yac AS
  44921. SELECT feature.feature_id AS yac_id,
  44922. feature.feature_id,
  44923. feature.dbxref_id,
  44924. feature.organism_id,
  44925. feature.name,
  44926. feature.uniquename,
  44927. feature.residues,
  44928. feature.seqlen,
  44929. feature.md5checksum,
  44930. feature.type_id,
  44931. feature.is_analysis,
  44932. feature.is_obsolete,
  44933. feature.timeaccessioned,
  44934. feature.timelastmodified
  44935. FROM (feature
  44936. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44937. WHERE ((cvterm.name)::text = 'YAC'::text);
  44938. --
  44939. -- Name: yac_end; Type: VIEW; Schema: so; Owner: -
  44940. --
  44941. CREATE VIEW yac_end AS
  44942. SELECT feature.feature_id AS yac_end_id,
  44943. feature.feature_id,
  44944. feature.dbxref_id,
  44945. feature.organism_id,
  44946. feature.name,
  44947. feature.uniquename,
  44948. feature.residues,
  44949. feature.seqlen,
  44950. feature.md5checksum,
  44951. feature.type_id,
  44952. feature.is_analysis,
  44953. feature.is_obsolete,
  44954. feature.timeaccessioned,
  44955. feature.timelastmodified
  44956. FROM (feature
  44957. JOIN cvterm ON ((feature.type_id = cvterm.cvterm_id)))
  44958. WHERE ((cvterm.name)::text = 'YAC_end'::text);
  44959. SET search_path = public, pg_catalog;
  44960. --
  44961. -- Name: cv_root; Type: VIEW; Schema: public; Owner: -
  44962. --
  44963. CREATE VIEW cv_root AS
  44964. SELECT cvterm.cv_id,
  44965. cvterm.cvterm_id AS root_cvterm_id
  44966. FROM cvterm
  44967. WHERE ((NOT (cvterm.cvterm_id IN ( SELECT cvterm_relationship.subject_id
  44968. FROM cvterm_relationship))) AND (cvterm.is_obsolete = 0));
  44969. --
  44970. -- Name: VIEW cv_root; Type: COMMENT; Schema: public; Owner: -
  44971. --
  44972. COMMENT ON VIEW cv_root IS 'the roots of a cv are the set of terms
  44973. which have no parents (terms that are not the subject of a
  44974. relation). Most cvs will have a single root, some may have >1. All
  44975. will have at least 1';
  44976. --
  44977. -- Name: stats_paths_to_root; Type: VIEW; Schema: public; Owner: -
  44978. --
  44979. CREATE VIEW stats_paths_to_root AS
  44980. SELECT cvtermpath.subject_id AS cvterm_id,
  44981. count(DISTINCT cvtermpath.cvtermpath_id) AS total_paths,
  44982. avg(cvtermpath.pathdistance) AS avg_distance,
  44983. min(cvtermpath.pathdistance) AS min_distance,
  44984. max(cvtermpath.pathdistance) AS max_distance
  44985. FROM (cvtermpath
  44986. JOIN cv_root ON ((cvtermpath.object_id = cv_root.root_cvterm_id)))
  44987. GROUP BY cvtermpath.subject_id;
  44988. --
  44989. -- Name: VIEW stats_paths_to_root; Type: COMMENT; Schema: public; Owner: -
  44990. --
  44991. COMMENT ON VIEW stats_paths_to_root IS 'per-cvterm statistics on its
  44992. placement in the DAG relative to the root. There may be multiple paths
  44993. from any term to the root. This gives the total number of paths, and
  44994. the average minimum and maximum distances. Here distance is defined by
  44995. cvtermpath.pathdistance';
  44996. --
  44997. -- Name: INDEX cvterm_c1; Type: COMMENT; Schema: public; Owner: -
  44998. --
  44999. COMMENT ON INDEX cvterm_c1 IS 'A name can mean different things in
  45000. different contexts; for example "chromosome" in SO and GO. A name
  45001. should be unique within an ontology or cv. A name may exist twice in a
  45002. cv, in both obsolete and non-obsolete forms - these will be for
  45003. different cvterms with different OBO identifiers; so GO documentation
  45004. for more details on obsoletion. Note that occasionally multiple
  45005. obsolete terms with the same name will exist in the same cv. If this
  45006. is a possibility for the ontology under consideration (e.g. GO) then the
  45007. ID should be appended to the name to ensure uniqueness.';
  45008. --
  45009. -- Name: INDEX cvterm_c2; Type: COMMENT; Schema: public; Owner: -
  45010. --
  45011. COMMENT ON INDEX cvterm_c2 IS 'The OBO identifier is globally unique.';
  45012. COMMENT ON INDEX featureprop_c1 IS 'For any one feature, multivalued
  45013. property-value pairs must be differentiated by rank.';
  45014. --
  45015. -- gmod_materialized_view_tool.pl --create_view --view_name all_feature_names --table_name public.all_feature_names --refresh_time daily --column_def "feature_id bigint,name varchar(255),organism_id bigint,searchable_name tsvector" --sql_query "SELECT feature_id, CAST(substring(uniquename FROM 0 FOR 255) AS varchar(255)) AS name, organism_id, to_tsvector('english', CAST(substring(uniquename FROM 0 FOR 255) AS varchar(255))) AS searchable_name FROM feature UNION SELECT feature_id, name, organism_id, to_tsvector('english', name) AS searchable_name FROM feature WHERE name IS NOT NULL UNION SELECT fs.feature_id, s.name, f.organism_id, to_tsvector('english', s.name) AS searchable_name FROM feature_synonym fs, synonym s, feature f WHERE fs.synonym_id = s.synonym_id AND fs.feature_id = f.feature_id UNION SELECT fp.feature_id, CAST(substring(fp.value FROM 0 FOR 255) AS varchar(255)) AS name, f.organism_id, to_tsvector('english',CAST(substring(fp.value FROM 0 FOR 255) AS varchar(255))) AS searchable_name FROM featureprop fp, feature f WHERE f.feature_id = fp.feature_id UNION SELECT fd.feature_id, d.accession, f.organism_id,to_tsvector('english',d.accession) AS searchable_name FROM feature_dbxref fd, dbxref d,feature f WHERE fd.dbxref_id = d.dbxref_id AND fd.feature_id = f.feature_id" --index_fields "feature_id,name" --special_index "CREATE INDEX searchable_all_feature_names_idx ON all_feature_names USING gin(searchable_name)" --yes
  45016. --
  45017. CREATE OR REPLACE VIEW all_feature_names (
  45018. feature_id,
  45019. name,
  45020. organism_id
  45021. ) AS
  45022. SELECT feature_id,CAST(substring(uniquename from 0 for 255) as varchar(255)) as name,organism_id FROM feature
  45023. UNION
  45024. SELECT feature_id, name, organism_id FROM feature where name is not null
  45025. UNION
  45026. SELECT fs.feature_id,s.name,f.organism_id FROM feature_synonym fs, synonym s, feature f
  45027. WHERE fs.synonym_id = s.synonym_id AND fs.feature_id = f.feature_id
  45028. UNION
  45029. SELECT fp.feature_id, CAST(substring(fp.value from 0 for 255) as varchar(255)) as name,f.organism_id FROM featureprop fp, feature f
  45030. WHERE f.feature_id = fp.feature_id
  45031. UNION
  45032. SELECT fd.feature_id, d.accession, f.organism_id FROM feature_dbxref fd, dbxref d,feature f
  45033. WHERE fd.dbxref_id = d.dbxref_id AND fd.feature_id = f.feature_id;
  45034. --
  45035. -- Name: common_ancestor_cvterm; Type: VIEW; Schema: public; Owner: -
  45036. --
  45037. CREATE VIEW common_ancestor_cvterm AS
  45038. SELECT p1.subject_id AS cvterm1_id,
  45039. p2.subject_id AS cvterm2_id,
  45040. p1.object_id AS ancestor_cvterm_id,
  45041. p1.pathdistance AS pathdistance1,
  45042. p2.pathdistance AS pathdistance2,
  45043. (p1.pathdistance + p2.pathdistance) AS total_pathdistance
  45044. FROM cvtermpath p1,
  45045. cvtermpath p2
  45046. WHERE (p1.object_id = p2.object_id);
  45047. --
  45048. -- Name: VIEW common_ancestor_cvterm; Type: COMMENT; Schema: public; Owner: -
  45049. --
  45050. COMMENT ON VIEW common_ancestor_cvterm IS 'The common ancestor of any
  45051. two terms is the intersection of both terms ancestors. Two terms can
  45052. have multiple common ancestors. Use total_pathdistance to get the
  45053. least common ancestor';
  45054. --
  45055. -- Name: common_descendant_cvterm; Type: VIEW; Schema: public; Owner: -
  45056. --
  45057. CREATE VIEW common_descendant_cvterm AS
  45058. SELECT p1.object_id AS cvterm1_id,
  45059. p2.object_id AS cvterm2_id,
  45060. p1.subject_id AS ancestor_cvterm_id,
  45061. p1.pathdistance AS pathdistance1,
  45062. p2.pathdistance AS pathdistance2,
  45063. (p1.pathdistance + p2.pathdistance) AS total_pathdistance
  45064. FROM cvtermpath p1,
  45065. cvtermpath p2
  45066. WHERE (p1.subject_id = p2.subject_id);
  45067. --
  45068. -- Name: VIEW common_descendant_cvterm; Type: COMMENT; Schema: public; Owner: -
  45069. --
  45070. COMMENT ON VIEW common_descendant_cvterm IS 'The common descendant of
  45071. any two terms is the intersection of both terms descendants. Two terms
  45072. can have multiple common descendants. Use total_pathdistance to get
  45073. the least common ancestor';
  45074. --
  45075. -- Name: cv_cvterm_count; Type: VIEW; Schema: public; Owner: -
  45076. --
  45077. CREATE VIEW cv_cvterm_count AS
  45078. SELECT cv.name,
  45079. count(*) AS num_terms_excl_obs
  45080. FROM (cv
  45081. JOIN cvterm USING (cv_id))
  45082. WHERE (cvterm.is_obsolete = 0)
  45083. GROUP BY cv.name;
  45084. --
  45085. -- Name: VIEW cv_cvterm_count; Type: COMMENT; Schema: public; Owner: -
  45086. --
  45087. COMMENT ON VIEW cv_cvterm_count IS 'per-cv terms counts (excludes obsoletes)';
  45088. --
  45089. -- Name: cv_cvterm_count_with_obs; Type: VIEW; Schema: public; Owner: -
  45090. --
  45091. CREATE VIEW cv_cvterm_count_with_obs AS
  45092. SELECT cv.name,
  45093. count(*) AS num_terms_incl_obs
  45094. FROM (cv
  45095. JOIN cvterm USING (cv_id))
  45096. GROUP BY cv.name;
  45097. --
  45098. -- Name: VIEW cv_cvterm_count_with_obs; Type: COMMENT; Schema: public; Owner: -
  45099. --
  45100. COMMENT ON VIEW cv_cvterm_count_with_obs IS 'per-cv terms counts (includes obsoletes)';
  45101. --
  45102. -- Name: cv_leaf; Type: VIEW; Schema: public; Owner: -
  45103. --
  45104. CREATE VIEW cv_leaf AS
  45105. SELECT cvterm.cv_id,
  45106. cvterm.cvterm_id
  45107. FROM cvterm
  45108. WHERE (NOT (cvterm.cvterm_id IN ( SELECT cvterm_relationship.object_id
  45109. FROM cvterm_relationship)));
  45110. --
  45111. -- Name: VIEW cv_leaf; Type: COMMENT; Schema: public; Owner: -
  45112. --
  45113. COMMENT ON VIEW cv_leaf IS 'the leaves of a cv are the set of terms
  45114. which have no children (terms that are not the object of a
  45115. relation). All cvs will have at least 1 leaf';
  45116. --
  45117. -- Name: cv_link_count; Type: VIEW; Schema: public; Owner: -
  45118. --
  45119. CREATE VIEW cv_link_count AS
  45120. SELECT cv.name AS cv_name,
  45121. relation.name AS relation_name,
  45122. relation_cv.name AS relation_cv_name,
  45123. count(*) AS num_links
  45124. FROM ((((cv
  45125. JOIN cvterm ON ((cvterm.cv_id = cv.cv_id)))
  45126. JOIN cvterm_relationship ON ((cvterm.cvterm_id = cvterm_relationship.subject_id)))
  45127. JOIN cvterm relation ON ((cvterm_relationship.type_id = relation.cvterm_id)))
  45128. JOIN cv relation_cv ON ((relation.cv_id = relation_cv.cv_id)))
  45129. GROUP BY cv.name, relation.name, relation_cv.name;
  45130. --
  45131. -- Name: VIEW cv_link_count; Type: COMMENT; Schema: public; Owner: -
  45132. --
  45133. COMMENT ON VIEW cv_link_count IS 'per-cv summary of number of
  45134. links (cvterm_relationships) broken down by
  45135. relationship_type. num_links is the total # of links of the specified
  45136. type in which the subject_id of the link is in the named cv';
  45137. --
  45138. -- Name: cv_path_count; Type: VIEW; Schema: public; Owner: -
  45139. --
  45140. CREATE VIEW cv_path_count AS
  45141. SELECT cv.name AS cv_name,
  45142. relation.name AS relation_name,
  45143. relation_cv.name AS relation_cv_name,
  45144. count(*) AS num_paths
  45145. FROM ((((cv
  45146. JOIN cvterm ON ((cvterm.cv_id = cv.cv_id)))
  45147. JOIN cvtermpath ON ((cvterm.cvterm_id = cvtermpath.subject_id)))
  45148. JOIN cvterm relation ON ((cvtermpath.type_id = relation.cvterm_id)))
  45149. JOIN cv relation_cv ON ((relation.cv_id = relation_cv.cv_id)))
  45150. GROUP BY cv.name, relation.name, relation_cv.name;
  45151. --
  45152. -- Name: VIEW cv_path_count; Type: COMMENT; Schema: public; Owner: -
  45153. --
  45154. COMMENT ON VIEW cv_path_count IS 'per-cv summary of number of
  45155. paths (cvtermpaths) broken down by relationship_type. num_paths is the
  45156. total # of paths of the specified type in which the subject_id of the
  45157. path is in the named cv. See also: cv_distinct_relations';
  45158. --
  45159. -- Name: db_dbxref_count; Type: VIEW; Schema: public; Owner: -
  45160. --
  45161. CREATE VIEW db_dbxref_count AS
  45162. SELECT db.name,
  45163. count(*) AS num_dbxrefs
  45164. FROM (db
  45165. JOIN dbxref USING (db_id))
  45166. GROUP BY db.name;
  45167. --
  45168. -- Name: VIEW db_dbxref_count; Type: COMMENT; Schema: public; Owner: -
  45169. --
  45170. COMMENT ON VIEW db_dbxref_count IS 'per-db dbxref counts';
  45171. --
  45172. -- Name: dfeatureloc; Type: VIEW; Schema: public; Owner: -
  45173. --
  45174. CREATE VIEW dfeatureloc AS
  45175. SELECT featureloc.featureloc_id,
  45176. featureloc.feature_id,
  45177. featureloc.srcfeature_id,
  45178. featureloc.fmin AS nbeg,
  45179. featureloc.is_fmin_partial AS is_nbeg_partial,
  45180. featureloc.fmax AS nend,
  45181. featureloc.is_fmax_partial AS is_nend_partial,
  45182. featureloc.strand,
  45183. featureloc.phase,
  45184. featureloc.residue_info,
  45185. featureloc.locgroup,
  45186. featureloc.rank
  45187. FROM featureloc
  45188. WHERE ((featureloc.strand < 0) OR (featureloc.phase < 0))
  45189. UNION
  45190. SELECT featureloc.featureloc_id,
  45191. featureloc.feature_id,
  45192. featureloc.srcfeature_id,
  45193. featureloc.fmax AS nbeg,
  45194. featureloc.is_fmax_partial AS is_nbeg_partial,
  45195. featureloc.fmin AS nend,
  45196. featureloc.is_fmin_partial AS is_nend_partial,
  45197. featureloc.strand,
  45198. featureloc.phase,
  45199. featureloc.residue_info,
  45200. featureloc.locgroup,
  45201. featureloc.rank
  45202. FROM featureloc
  45203. WHERE (((featureloc.strand IS NULL) OR (featureloc.strand >= 0)) OR (featureloc.phase >= 0));
  45204. --
  45205. -- Name: feature_contains; Type: VIEW; Schema: public; Owner: -
  45206. --
  45207. CREATE VIEW feature_contains AS
  45208. SELECT x.feature_id AS subject_id,
  45209. y.feature_id AS object_id
  45210. FROM featureloc x,
  45211. featureloc y
  45212. WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((y.fmin >= x.fmin) AND (y.fmin <= x.fmax)));
  45213. --
  45214. -- Name: VIEW feature_contains; Type: COMMENT; Schema: public; Owner: -
  45215. --
  45216. COMMENT ON VIEW feature_contains IS 'subject intervals contains (or is
  45217. same as) object interval. transitive,reflexive';
  45218. --
  45219. -- Name: feature_difference; Type: VIEW; Schema: public; Owner: -
  45220. --
  45221. CREATE VIEW feature_difference AS
  45222. SELECT x.feature_id AS subject_id,
  45223. y.feature_id AS object_id,
  45224. x.strand AS srcfeature_id,
  45225. x.srcfeature_id AS fmin,
  45226. x.fmin AS fmax,
  45227. y.fmin AS strand
  45228. FROM featureloc x,
  45229. featureloc y
  45230. WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((x.fmin < y.fmin) AND (x.fmax >= y.fmax)))
  45231. UNION
  45232. SELECT x.feature_id AS subject_id,
  45233. y.feature_id AS object_id,
  45234. x.strand AS srcfeature_id,
  45235. x.srcfeature_id AS fmin,
  45236. y.fmax,
  45237. x.fmax AS strand
  45238. FROM featureloc x,
  45239. featureloc y
  45240. WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((x.fmax > y.fmax) AND (x.fmin <= y.fmin)));
  45241. --
  45242. -- Name: VIEW feature_difference; Type: COMMENT; Schema: public; Owner: -
  45243. --
  45244. COMMENT ON VIEW feature_difference IS 'size of gap between two features. must be abutting or disjoint';
  45245. --
  45246. -- Name: feature_disjoint; Type: VIEW; Schema: public; Owner: -
  45247. --
  45248. CREATE VIEW feature_disjoint AS
  45249. SELECT x.feature_id AS subject_id,
  45250. y.feature_id AS object_id
  45251. FROM featureloc x,
  45252. featureloc y
  45253. WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((x.fmax < y.fmin) AND (x.fmin > y.fmax)));
  45254. --
  45255. -- Name: VIEW feature_disjoint; Type: COMMENT; Schema: public; Owner: -
  45256. --
  45257. COMMENT ON VIEW feature_disjoint IS 'featurelocs do not meet. symmetric';
  45258. --
  45259. -- Name: feature_distance; Type: VIEW; Schema: public; Owner: -
  45260. --
  45261. CREATE VIEW feature_distance AS
  45262. SELECT x.feature_id AS subject_id,
  45263. y.feature_id AS object_id,
  45264. x.srcfeature_id,
  45265. x.strand AS subject_strand,
  45266. y.strand AS object_strand,
  45267. CASE
  45268. WHEN (x.fmax <= y.fmin) THEN (x.fmax - y.fmin)
  45269. ELSE (y.fmax - x.fmin)
  45270. END AS distance
  45271. FROM featureloc x,
  45272. featureloc y
  45273. WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((x.fmax <= y.fmin) OR (x.fmin >= y.fmax)));
  45274. --
  45275. -- Name: feature_intersection; Type: VIEW; Schema: public; Owner: -
  45276. --
  45277. CREATE VIEW feature_intersection AS
  45278. SELECT x.feature_id AS subject_id,
  45279. y.feature_id AS object_id,
  45280. x.srcfeature_id,
  45281. x.strand AS subject_strand,
  45282. y.strand AS object_strand,
  45283. CASE
  45284. WHEN (x.fmin < y.fmin) THEN y.fmin
  45285. ELSE x.fmin
  45286. END AS fmin,
  45287. CASE
  45288. WHEN (x.fmax > y.fmax) THEN y.fmax
  45289. ELSE x.fmax
  45290. END AS fmax
  45291. FROM featureloc x,
  45292. featureloc y
  45293. WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((x.fmax >= y.fmin) AND (x.fmin <= y.fmax)));
  45294. --
  45295. -- Name: VIEW feature_intersection; Type: COMMENT; Schema: public; Owner: -
  45296. --
  45297. COMMENT ON VIEW feature_intersection IS 'set-intersection on interval defined by featureloc. featurelocs must meet';
  45298. --
  45299. -- Name: feature_meets; Type: VIEW; Schema: public; Owner: -
  45300. --
  45301. CREATE VIEW feature_meets AS
  45302. SELECT x.feature_id AS subject_id,
  45303. y.feature_id AS object_id
  45304. FROM featureloc x,
  45305. featureloc y
  45306. WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((x.fmax >= y.fmin) AND (x.fmin <= y.fmax)));
  45307. --
  45308. -- Name: VIEW feature_meets; Type: COMMENT; Schema: public; Owner: -
  45309. --
  45310. COMMENT ON VIEW feature_meets IS 'intervals have at least one
  45311. interbase point in common (ie overlap OR abut). symmetric,reflexive';
  45312. --
  45313. -- Name: feature_meets_on_same_strand; Type: VIEW; Schema: public; Owner: -
  45314. --
  45315. CREATE VIEW feature_meets_on_same_strand AS
  45316. SELECT x.feature_id AS subject_id,
  45317. y.feature_id AS object_id
  45318. FROM featureloc x,
  45319. featureloc y
  45320. WHERE (((x.srcfeature_id = y.srcfeature_id) AND (x.strand = y.strand)) AND ((x.fmax >= y.fmin) AND (x.fmin <= y.fmax)));
  45321. --
  45322. -- Name: VIEW feature_meets_on_same_strand; Type: COMMENT; Schema: public; Owner: -
  45323. --
  45324. COMMENT ON VIEW feature_meets_on_same_strand IS 'as feature_meets, but
  45325. featurelocs must be on the same strand. symmetric,reflexive';
  45326. --
  45327. -- Name: featureset_meets; Type: VIEW; Schema: public; Owner: -
  45328. --
  45329. CREATE VIEW featureset_meets AS
  45330. SELECT x.object_id AS subject_id,
  45331. y.object_id
  45332. FROM ((feature_meets r
  45333. JOIN feature_relationship x ON ((r.subject_id = x.subject_id)))
  45334. JOIN feature_relationship y ON ((r.object_id = y.subject_id)));
  45335. --
  45336. -- Name: feature_union; Type: VIEW; Schema: public; Owner: -
  45337. --
  45338. CREATE VIEW feature_union AS
  45339. SELECT x.feature_id AS subject_id,
  45340. y.feature_id AS object_id,
  45341. x.srcfeature_id,
  45342. x.strand AS subject_strand,
  45343. y.strand AS object_strand,
  45344. CASE
  45345. WHEN (x.fmin < y.fmin) THEN x.fmin
  45346. ELSE y.fmin
  45347. END AS fmin,
  45348. CASE
  45349. WHEN (x.fmax > y.fmax) THEN x.fmax
  45350. ELSE y.fmax
  45351. END AS fmax
  45352. FROM featureloc x,
  45353. featureloc y
  45354. WHERE ((x.srcfeature_id = y.srcfeature_id) AND ((x.fmax >= y.fmin) AND (x.fmin <= y.fmax)));
  45355. --
  45356. -- Name: VIEW feature_union; Type: COMMENT; Schema: public; Owner: -
  45357. --
  45358. COMMENT ON VIEW feature_union IS 'set-union on interval defined by featureloc. featurelocs must meet';
  45359. --
  45360. -- Name: f_type; Type: VIEW; Schema: public; Owner: -
  45361. --
  45362. CREATE VIEW f_type AS
  45363. SELECT f.feature_id,
  45364. f.name,
  45365. f.dbxref_id,
  45366. c.name AS type,
  45367. f.residues,
  45368. f.seqlen,
  45369. f.md5checksum,
  45370. f.type_id,
  45371. f.timeaccessioned,
  45372. f.timelastmodified
  45373. FROM feature f,
  45374. cvterm c
  45375. WHERE (f.type_id = c.cvterm_id);
  45376. --
  45377. -- Name: f_loc; Type: VIEW; Schema: public; Owner: -
  45378. --
  45379. CREATE VIEW f_loc AS
  45380. SELECT f.feature_id,
  45381. f.name,
  45382. f.dbxref_id,
  45383. fl.nbeg,
  45384. fl.nend,
  45385. fl.strand
  45386. FROM dfeatureloc fl,
  45387. f_type f
  45388. WHERE (f.feature_id = fl.feature_id);
  45389. --
  45390. -- Name: fnr_type; Type: VIEW; Schema: public; Owner: -
  45391. --
  45392. CREATE VIEW fnr_type AS
  45393. SELECT f.feature_id,
  45394. f.name,
  45395. f.dbxref_id,
  45396. c.name AS type,
  45397. f.residues,
  45398. f.seqlen,
  45399. f.md5checksum,
  45400. f.type_id,
  45401. f.timeaccessioned,
  45402. f.timelastmodified
  45403. FROM (feature f
  45404. LEFT JOIN analysisfeature af ON ((f.feature_id = af.feature_id))),
  45405. cvterm c
  45406. WHERE ((f.type_id = c.cvterm_id) AND (af.feature_id IS NULL));
  45407. --
  45408. -- Name: fp_key; Type: VIEW; Schema: public; Owner: -
  45409. --
  45410. CREATE VIEW fp_key AS
  45411. SELECT fp.feature_id,
  45412. c.name AS pkey,
  45413. fp.value
  45414. FROM featureprop fp,
  45415. cvterm c
  45416. WHERE (fp.featureprop_id = c.cvterm_id);
  45417. --
  45418. -- Name: gff3view; Type: VIEW; Schema: public; Owner: -
  45419. --
  45420. CREATE VIEW gff3view AS
  45421. SELECT f.feature_id,
  45422. sf.name AS ref,
  45423. COALESCE(gffdbx.accession, '.'::character varying(255)) AS source,
  45424. cv.name AS type,
  45425. (fl.fmin + 1) AS fstart,
  45426. fl.fmax AS fend,
  45427. COALESCE((af.significance)::text, '.'::text) AS score,
  45428. CASE
  45429. WHEN (fl.strand = (-1)) THEN '-'::text
  45430. WHEN (fl.strand = 1) THEN '+'::text
  45431. ELSE '.'::text
  45432. END AS strand,
  45433. COALESCE((fl.phase)::text, '.'::text) AS phase,
  45434. f.seqlen,
  45435. f.name,
  45436. f.organism_id
  45437. FROM (((((feature f
  45438. LEFT JOIN featureloc fl ON ((f.feature_id = fl.feature_id)))
  45439. LEFT JOIN feature sf ON ((fl.srcfeature_id = sf.feature_id)))
  45440. LEFT JOIN ( SELECT fd.feature_id,
  45441. d.accession
  45442. FROM ((feature_dbxref fd
  45443. JOIN dbxref d USING (dbxref_id))
  45444. JOIN db USING (db_id))
  45445. WHERE ((db.name)::text = 'GFF_source'::text)) gffdbx ON ((f.feature_id = gffdbx.feature_id)))
  45446. LEFT JOIN cvterm cv ON ((f.type_id = cv.cvterm_id)))
  45447. LEFT JOIN analysisfeature af ON ((f.feature_id = af.feature_id)));
  45448. --
  45449. -- Name: intron_combined_view; Type: VIEW; Schema: public; Owner: -
  45450. --
  45451. CREATE VIEW intron_combined_view AS
  45452. SELECT x1.feature_id AS exon1_id,
  45453. x2.feature_id AS exon2_id,
  45454. CASE
  45455. WHEN (l1.strand = (-1)) THEN l2.fmax
  45456. ELSE l1.fmax
  45457. END AS fmin,
  45458. CASE
  45459. WHEN (l1.strand = (-1)) THEN l1.fmin
  45460. ELSE l2.fmin
  45461. END AS fmax,
  45462. l1.strand,
  45463. l1.srcfeature_id,
  45464. r1.rank AS intron_rank,
  45465. r1.object_id AS transcript_id
  45466. FROM ((((((cvterm
  45467. JOIN feature x1 ON ((x1.type_id = cvterm.cvterm_id)))
  45468. JOIN feature_relationship r1 ON ((x1.feature_id = r1.subject_id)))
  45469. JOIN featureloc l1 ON ((x1.feature_id = l1.feature_id)))
  45470. JOIN feature x2 ON ((x2.type_id = cvterm.cvterm_id)))
  45471. JOIN feature_relationship r2 ON ((x2.feature_id = r2.subject_id)))
  45472. JOIN featureloc l2 ON ((x2.feature_id = l2.feature_id)))
  45473. WHERE ((((((((cvterm.name)::text = 'exon'::text) AND ((r2.rank - r1.rank) = 1)) AND (r1.object_id = r2.object_id)) AND (l1.strand = l2.strand)) AND (l1.srcfeature_id = l2.srcfeature_id)) AND (l1.locgroup = 0)) AND (l2.locgroup = 0));
  45474. --
  45475. -- Name: intronloc_view; Type: VIEW; Schema: public; Owner: -
  45476. --
  45477. CREATE VIEW intronloc_view AS
  45478. SELECT DISTINCT intron_combined_view.exon1_id,
  45479. intron_combined_view.exon2_id,
  45480. intron_combined_view.fmin,
  45481. intron_combined_view.fmax,
  45482. intron_combined_view.strand,
  45483. intron_combined_view.srcfeature_id
  45484. FROM intron_combined_view;
  45485. --
  45486. -- Name: type_feature_count; Type: VIEW; Schema: public; Owner: -
  45487. --
  45488. CREATE VIEW type_feature_count AS
  45489. SELECT t.name AS type,
  45490. count(*) AS num_features
  45491. FROM (cvterm t
  45492. JOIN feature ON ((feature.type_id = t.cvterm_id)))
  45493. GROUP BY t.name;
  45494. --
  45495. -- Name: VIEW type_feature_count; Type: COMMENT; Schema: public; Owner: -
  45496. --
  45497. COMMENT ON VIEW type_feature_count IS 'per-feature-type feature counts';
  45498. --
  45499. -- Name: gffatts; Type: VIEW; Schema: public; Owner: -
  45500. --
  45501. CREATE VIEW gffatts AS
  45502. SELECT fs.feature_id,
  45503. 'Ontology_term'::text AS type,
  45504. s.name AS attribute
  45505. FROM cvterm s,
  45506. feature_cvterm fs
  45507. WHERE (fs.cvterm_id = s.cvterm_id)
  45508. UNION ALL
  45509. SELECT fs.feature_id,
  45510. 'Dbxref'::text AS type,
  45511. (((d.name)::text || ':'::text) || (s.accession)::text) AS attribute
  45512. FROM dbxref s,
  45513. feature_dbxref fs,
  45514. db d
  45515. WHERE ((fs.dbxref_id = s.dbxref_id) AND (s.db_id = d.db_id))
  45516. UNION ALL
  45517. SELECT fs.feature_id,
  45518. 'Alias'::text AS type,
  45519. s.name AS attribute
  45520. FROM synonym s,
  45521. feature_synonym fs
  45522. WHERE (fs.synonym_id = s.synonym_id)
  45523. UNION ALL
  45524. SELECT fp.feature_id,
  45525. cv.name AS type,
  45526. fp.value AS attribute
  45527. FROM featureprop fp,
  45528. cvterm cv
  45529. WHERE (fp.type_id = cv.cvterm_id)
  45530. UNION ALL
  45531. SELECT fs.feature_id,
  45532. 'pub'::text AS type,
  45533. (((s.series_name)::text || ':'::text) || s.title) AS attribute
  45534. FROM pub s,
  45535. feature_pub fs
  45536. WHERE (fs.pub_id = s.pub_id);
  45537. --
  45538. -- Name: gff3atts; Type: VIEW; Schema: public; Owner: -
  45539. --
  45540. CREATE VIEW gff3atts AS
  45541. SELECT fs.feature_id,
  45542. 'Ontology_term'::text AS type,
  45543. CASE
  45544. WHEN ((db.name)::text ~~ '%Gene Ontology%'::text) THEN (('GO:'::text || (dbx.accession)::text))::character varying
  45545. WHEN ((db.name)::text ~~ 'Sequence Ontology%'::text) THEN (('SO:'::text || (dbx.accession)::text))::character varying
  45546. ELSE ((((db.name)::text || ':'::text) || (dbx.accession)::text))::character varying
  45547. END AS attribute
  45548. FROM cvterm s,
  45549. dbxref dbx,
  45550. feature_cvterm fs,
  45551. db
  45552. WHERE (((fs.cvterm_id = s.cvterm_id) AND (s.dbxref_id = dbx.dbxref_id)) AND (db.db_id = dbx.db_id))
  45553. UNION ALL
  45554. SELECT fs.feature_id,
  45555. 'Dbxref'::text AS type,
  45556. (((d.name)::text || ':'::text) || (s.accession)::text) AS attribute
  45557. FROM dbxref s,
  45558. feature_dbxref fs,
  45559. db d
  45560. WHERE (((fs.dbxref_id = s.dbxref_id) AND (s.db_id = d.db_id)) AND ((d.name)::text <> 'GFF_source'::text))
  45561. UNION ALL
  45562. SELECT f.feature_id,
  45563. 'Alias'::text AS type,
  45564. s.name AS attribute
  45565. FROM synonym s,
  45566. feature_synonym fs,
  45567. feature f
  45568. WHERE ((((fs.synonym_id = s.synonym_id) AND (f.feature_id = fs.feature_id)) AND ((f.name)::text <> (s.name)::text)) AND (f.uniquename <> (s.name)::text))
  45569. UNION ALL
  45570. SELECT fp.feature_id,
  45571. cv.name AS type,
  45572. fp.value AS attribute
  45573. FROM featureprop fp,
  45574. cvterm cv
  45575. WHERE (fp.type_id = cv.cvterm_id)
  45576. UNION ALL
  45577. SELECT fs.feature_id,
  45578. 'pub'::text AS type,
  45579. (((s.series_name)::text || ':'::text) || s.title) AS attribute
  45580. FROM pub s,
  45581. feature_pub fs
  45582. WHERE (fs.pub_id = s.pub_id)
  45583. UNION ALL
  45584. SELECT fr.subject_id AS feature_id,
  45585. 'Parent'::text AS type,
  45586. parent.uniquename AS attribute
  45587. FROM feature_relationship fr,
  45588. feature parent
  45589. WHERE ((fr.object_id = parent.feature_id) AND (fr.type_id = ( SELECT cvterm.cvterm_id
  45590. FROM cvterm
  45591. WHERE (((cvterm.name)::text = 'part_of'::text) AND (cvterm.cv_id IN ( SELECT cv.cv_id
  45592. FROM cv
  45593. WHERE ((cv.name)::text = 'relationship'::text)))))))
  45594. UNION ALL
  45595. SELECT fr.subject_id AS feature_id,
  45596. 'Derives_from'::text AS type,
  45597. parent.uniquename AS attribute
  45598. FROM feature_relationship fr,
  45599. feature parent
  45600. WHERE ((fr.object_id = parent.feature_id) AND (fr.type_id = ( SELECT cvterm.cvterm_id
  45601. FROM cvterm
  45602. WHERE (((cvterm.name)::text = 'derives_from'::text) AND (cvterm.cv_id IN ( SELECT cv.cv_id
  45603. FROM cv
  45604. WHERE ((cv.name)::text = 'relationship'::text)))))))
  45605. UNION ALL
  45606. SELECT fl.feature_id,
  45607. 'Target'::text AS type,
  45608. (((((((target.name)::text || ' '::text) || (fl.fmin + 1)) || ' '::text) || fl.fmax) || ' '::text) || fl.strand) AS attribute
  45609. FROM featureloc fl,
  45610. feature target
  45611. WHERE ((fl.srcfeature_id = target.feature_id) AND (fl.rank <> 0))
  45612. UNION ALL
  45613. SELECT feature.feature_id,
  45614. 'ID'::text AS type,
  45615. feature.uniquename AS attribute
  45616. FROM feature
  45617. WHERE (NOT (feature.type_id IN ( SELECT cvterm.cvterm_id
  45618. FROM cvterm
  45619. WHERE ((cvterm.name)::text = 'CDS'::text))))
  45620. UNION ALL
  45621. SELECT feature.feature_id,
  45622. 'chado_feature_id'::text AS type,
  45623. (feature.feature_id)::character varying AS attribute
  45624. FROM feature
  45625. UNION ALL
  45626. SELECT feature.feature_id,
  45627. 'Name'::text AS type,
  45628. feature.name AS attribute
  45629. FROM feature;
  45630. CREATE OR REPLACE VIEW common_descendant_cvterm AS
  45631. SELECT
  45632. p1.object_id AS cvterm1_id,
  45633. p2.object_id AS cvterm2_id,
  45634. p1.subject_id AS ancestor_cvterm_id,
  45635. p1.pathdistance AS pathdistance1,
  45636. p2.pathdistance AS pathdistance2,
  45637. p1.pathdistance + p2.pathdistance
  45638. AS total_pathdistance
  45639. FROM
  45640. cvtermpath AS p1,
  45641. cvtermpath AS p2
  45642. WHERE
  45643. p1.subject_id = p2.subject_id;
  45644. --
  45645. -- Name: gfffeatureatts(integer); Type: FUNCTION; Schema: public; Owner: chado
  45646. --
  45647. CREATE FUNCTION gfffeatureatts(integer) RETURNS SETOF gffatts
  45648. LANGUAGE sql
  45649. AS $_$
  45650. SELECT feature_id, 'Ontology_term' AS type, s.name AS attribute
  45651. FROM cvterm s, feature_cvterm fs
  45652. WHERE fs.feature_id= $1 AND fs.cvterm_id = s.cvterm_id
  45653. UNION
  45654. SELECT feature_id, 'Dbxref' AS type, d.name || ':' || s.accession AS attribute
  45655. FROM dbxref s, feature_dbxref fs, db d
  45656. WHERE fs.feature_id= $1 AND fs.dbxref_id = s.dbxref_id AND s.db_id = d.db_id
  45657. UNION
  45658. SELECT feature_id, 'Alias' AS type, s.name AS attribute
  45659. FROM synonym s, feature_synonym fs
  45660. WHERE fs.feature_id= $1 AND fs.synonym_id = s.synonym_id
  45661. UNION
  45662. SELECT fp.feature_id,cv.name,fp.value
  45663. FROM featureprop fp, cvterm cv
  45664. WHERE fp.feature_id= $1 AND fp.type_id = cv.cvterm_id
  45665. UNION
  45666. SELECT feature_id, 'pub' AS type, s.series_name || ':' || s.title AS attribute
  45667. FROM pub s, feature_pub fs
  45668. WHERE fs.feature_id= $1 AND fs.pub_id = s.pub_id
  45669. $_$;
  45670. create index feature_relationship_idx1b on feature_relationship (object_id, subject_id, type_id);
  45671. create index featureloc_idx1b on featureloc (feature_id, fmin, fmax);
  45672. create index feature_idx1b on feature (feature_id, dbxref_id) where dbxref_id is not null;