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- <?php
- /**
- * @file
- * Describe default genetic views
- */
- /**
- * Implements hook_views_default_views().
- *
- * @ingroup tripal_genetic
- */
- function tripal_genetic_views_default_views() {
- $views = [];
- // User View ("Search Biological Content")
- // Remember, if you change the name/path of this view,
- // you also want to change it's description in tripal_genetic_search_biological_data_views()
- $view = tripal_genetic_defaultvalue_user_genotypes();
- $view = tripal_make_view_compatible_with_external($view);
- $views[$view->name] = $view;
- // Admin view
- $view = tripal_genetic_defaultviews_admin_genotypes();
- $view = tripal_make_view_compatible_with_external($view);
- $views[$view->name] = $view;
- return $views;
- }
- /**
- * Defines the genetic user search default view.
- *
- * @ingroup tripal_genetic
- */
- function tripal_genetic_defaultvalue_user_genotypes() {
- // As a shortcut, currently I am copying the admin view and then tweaking it
- // In thie future this should be replaced by a views export
- $view = tripal_genetic_defaultviews_admin_genotypes();
- // change some view admin stuff
- $view->name = 'tripal_genetic_user_genotypes';
- $view->human_name = 'Genotype User Search';
- $view->description = 'Allows users to search genotype data';
- $view->tag = 'tripal search';
- // Change the path
- $view->display['page_1']->display_options['path'] = 'chado/genotype';
- $view->display['page_1']->display_options['menu'] = [
- 'type' => 'normal',
- 'title' => 'Genotypes',
- 'description' => 'Genetic variations such as SNPs, MNPs and indels.',
- 'weight' => '-10',
- ];
- unset($view->display['page_1']->display_options['tab_options']);
- // Remove edit/delete node
- unset(
- $view->display['default']->display_options['fields']['delete_node'],
- $view->display['default']->display_options['fields']['edit_node'],
- $view->display['default']->display_options['fields']['nothing']
- );
- // Remove the admin action links
- unset($view->display['default']->display_options['header']['action_links_area']);
- return $view;
- }
- /**
- * Describes the default administration genetic view
- *
- * @ingroup tripal_genetic
- */
- function tripal_genetic_defaultviews_admin_genotypes() {
- $view = new view();
- $view->name = 'tripal_genetic_admin_genetics';
- $view->description = 'DO NOT DISABLE';
- $view->tag = 'tripal admin';
- $view->base_table = 'genotype';
- $view->human_name = 'Genotype Admin';
- $view->core = 7;
- $view->api_version = '3.0';
- $view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */
- /* Display: Defaults */
- $handler = $view->new_display('default', 'Defaults', 'default');
- $handler->display->display_options['title'] = 'Genotypes Observed';
- $handler->display->display_options['use_more_always'] = FALSE;
- $handler->display->display_options['access']['type'] = 'perm';
- $handler->display->display_options['cache']['type'] = 'none';
- $handler->display->display_options['query']['type'] = 'views_query';
- $handler->display->display_options['exposed_form']['type'] = 'input_required';
- $handler->display->display_options['exposed_form']['options']['submit_button'] = 'Search';
- $handler->display->display_options['exposed_form']['options']['text_input_required'] = 'Click search to see a listing of genotypes that meet the filter requirements. Use the filters to restrict this set to a more reasonable number of genotypes or to find a specific genotype.';
- $handler->display->display_options['exposed_form']['options']['text_input_required_format'] = 'full_html';
- $handler->display->display_options['pager']['type'] = 'full';
- $handler->display->display_options['pager']['options']['items_per_page'] = '25';
- $handler->display->display_options['pager']['options']['offset'] = '0';
- $handler->display->display_options['pager']['options']['id'] = '0';
- $handler->display->display_options['pager']['options']['quantity'] = '9';
- $handler->display->display_options['style_plugin'] = 'table';
- $handler->display->display_options['style_options']['grouping'] = '';
- $handler->display->display_options['style_options']['columns'] = [
- 'uniquename' => 'uniquename',
- 'name' => 'name',
- 'description' => 'description',
- ];
- $handler->display->display_options['style_options']['default'] = 'uniquename';
- $handler->display->display_options['style_options']['info'] = [
- 'uniquename' => [
- 'sortable' => 1,
- 'separator' => '',
- ],
- 'name' => [
- 'sortable' => 1,
- 'separator' => '',
- ],
- 'description' => [
- 'sortable' => 1,
- 'separator' => '',
- ],
- ];
- /* No results behavior: Global: Text area */
- $handler->display->display_options['empty']['text']['id'] = 'area';
- $handler->display->display_options['empty']['text']['table'] = 'views';
- $handler->display->display_options['empty']['text']['field'] = 'area';
- $handler->display->display_options['empty']['text']['content'] = 'No genotypes match the current criteria.';
- $handler->display->display_options['empty']['text']['format'] = '2';
- /* Field: Chado Genotype: Uniquename */
- $handler->display->display_options['fields']['uniquename']['id'] = 'uniquename';
- $handler->display->display_options['fields']['uniquename']['table'] = 'genotype';
- $handler->display->display_options['fields']['uniquename']['field'] = 'uniquename';
- /* Field: Chado Genotype: Name */
- $handler->display->display_options['fields']['name']['id'] = 'name';
- $handler->display->display_options['fields']['name']['table'] = 'genotype';
- $handler->display->display_options['fields']['name']['field'] = 'name';
- /* Field: Chado Genotype: Description */
- $handler->display->display_options['fields']['description']['id'] = 'description';
- $handler->display->display_options['fields']['description']['table'] = 'genotype';
- $handler->display->display_options['fields']['description']['field'] = 'description';
- /* Sort criterion: Chado Genotype: Id */
- $handler->display->display_options['sorts']['genotype_id']['id'] = 'genotype_id';
- $handler->display->display_options['sorts']['genotype_id']['table'] = 'genotype';
- $handler->display->display_options['sorts']['genotype_id']['field'] = 'genotype_id';
- $handler->display->display_options['sorts']['genotype_id']['order'] = 'DESC';
- /* Filter criterion: Chado Genotype: Uniquename */
- $handler->display->display_options['filters']['uniquename']['id'] = 'uniquename';
- $handler->display->display_options['filters']['uniquename']['table'] = 'genotype';
- $handler->display->display_options['filters']['uniquename']['field'] = 'uniquename';
- $handler->display->display_options['filters']['uniquename']['operator'] = 'contains';
- $handler->display->display_options['filters']['uniquename']['group'] = '0';
- $handler->display->display_options['filters']['uniquename']['exposed'] = TRUE;
- $handler->display->display_options['filters']['uniquename']['expose']['operator_id'] = 'uniquename_op';
- $handler->display->display_options['filters']['uniquename']['expose']['label'] = 'Unique Name Contains';
- $handler->display->display_options['filters']['uniquename']['expose']['operator'] = 'uniquename_op';
- $handler->display->display_options['filters']['uniquename']['expose']['identifier'] = 'uniquename';
- $handler->display->display_options['filters']['uniquename']['expose']['remember_roles'] = [
- 2 => '2',
- 1 => 0,
- 3 => 0,
- ];
- /* Filter criterion: Chado Genotype: Description */
- $handler->display->display_options['filters']['description']['id'] = 'description';
- $handler->display->display_options['filters']['description']['table'] = 'genotype';
- $handler->display->display_options['filters']['description']['field'] = 'description';
- $handler->display->display_options['filters']['description']['operator'] = 'contains';
- $handler->display->display_options['filters']['description']['group'] = '0';
- $handler->display->display_options['filters']['description']['exposed'] = TRUE;
- $handler->display->display_options['filters']['description']['expose']['operator_id'] = 'description_op';
- $handler->display->display_options['filters']['description']['expose']['label'] = 'Description Contains';
- $handler->display->display_options['filters']['description']['expose']['operator'] = 'description_op';
- $handler->display->display_options['filters']['description']['expose']['identifier'] = 'description';
- $handler->display->display_options['filters']['description']['expose']['remember_roles'] = [
- 2 => '2',
- 1 => 0,
- 3 => 0,
- ];
- /* Display: Page */
- $handler = $view->new_display('page', 'Page', 'page_1');
- $handler->display->display_options['path'] = 'admin/tripal/legacy/tripal_genetic/genotypes';
- $handler->display->display_options['menu']['type'] = 'default tab';
- $handler->display->display_options['menu']['title'] = 'Genotypes';
- $handler->display->display_options['menu']['description'] = 'A genotype is defined by a collection of features, mutations, etc.';
- $handler->display->display_options['menu']['weight'] = '-10';
- $handler->display->display_options['menu']['context'] = 0;
- $handler->display->display_options['menu']['context_only_inline'] = 0;
- $handler->display->display_options['tab_options']['weight'] = '0';
- return $view;
- }
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