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- <?php
- $node = $variables['node'];
- $phylotree = $node->phylotree;
- if ($phylotree->analysis_id) {
- // the $headers array is an array of fields to use as the colum headers.
- // additional documentation can be found here
- // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
- $header = [
- 'Name',
- 'Description',
- [
- 'data' => 'Metadata',
- 'width' => '50%',
- ],
- ];
- // the $rows array contains an array of rows where each row is an array
- // of values for each column of the table in that row. Additional documentation
- // can be found here:
- // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
- $rows = [];
- $analysis = $phylotree->analysis_id;
- if ($analysis) {
- $analysis = chado_expand_var($analysis, 'field', 'analysis.description');
- // Source row
- $source = '';
- if ($analysis->sourceuri) {
- $source = "<a href=\"$analysis->sourceuri\">$analysis->sourcename</a>";
- }
- else {
- $source = $analysis->sourcename;
- }
- if ($analysis->sourceversion) {
- $source = " (" . $analysis->sourceversion . ")";
- }
- $software = $analysis->program;
- if ($analysis->programversion != 'n/a') {
- $software .= " (" . $analysis->programversion . ")";
- }
- if ($analysis->algorithm) {
- $software .= ". " . $analysis->algorithm;
- }
- $date = preg_replace("/^(\d+-\d+-\d+) .*/", "$1", $analysis->timeexecuted);
- $metadata = "
- <dl class=\"tripal-dl\">
- <dt>Method</dt> <dd>: $software</dd>
- <dt>Source</dt> <dd>: $source</dd>
- <dt>Date</dt> <dd>: $date</dd>
- </dl>
- ";
- $analysis_name = $analysis->name;
- if (property_exists($analysis, 'nid')) {
- $analysis_name = l($analysis_name, "node/" . $analysis->nid);
- }
- $rows[] = [$analysis_name, $analysis->description, $metadata];
- }
- // the $table array contains the headers and rows array as well as other
- // options for controlling the display of the table. Additional
- // documentation can be found here:
- // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
- $table = [
- 'header' => $header,
- 'rows' => $rows,
- 'attributes' => [
- 'id' => 'tripal_phylogeny-table-analysis',
- 'class' => 'tripal-data-table',
- ],
- 'sticky' => FALSE,
- 'caption' => '',
- 'colgroups' => [],
- 'empty' => t('This tree is not associated with an analysis'),
- ];
- print theme_table($table);
- }
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