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- $view = new view; $view->name = 'feature_search_view'; $view->description = 'Feature Search view'; $view->tag = ''; $view->view_php = ''; $view->base_table = 'feature_for_search'; $view->is_cacheable = FALSE; $view->api_version = 2; $view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */ $handler = $view->new_display('default', 'Defaults', 'default'); $handler->override_option('fields', array( 'counter' => array( 'label' => '#', 'alter' => array( 'alter_text' => 0, 'text' => '', 'make_link' => 0, 'path' => '', 'link_class' => '', 'alt' => '', 'prefix' => '', 'suffix' => '', 'target' => '', 'help' => '', 'trim' => 0, 'max_length' => '', 'word_boundary' => 1, 'ellipsis' => 1, 'html' => 0, 'strip_tags' => 0, ), 'empty' => '', 'hide_empty' => 0, 'empty_zero' => 0, 'counter_start' => '1', 'exclude' => 0, 'id' => 'counter', 'table' => 'views', 'field' => 'counter', 'relationship' => 'none', ), 'feature_id' => array( 'label' => 'feature ID', 'alter' => array( 'alter_text' => 0, 'text' => '', 'make_link' => 0, 'path' => '', 'link_class' => '', 'alt' => '', 'prefix' => '', 'suffix' => '', 'target' => '', 'help' => '', 'trim' => 0, 'max_length' => '', 'word_boundary' => 1, 'ellipsis' => 1, 'html' => 0, 'strip_tags' => 0, ), 'empty' => '', 'hide_empty' => 0, 'empty_zero' => 0, 'exclude' => 1, 'id' => 'feature_id', 'table' => 'feature_for_search', 'field' => 'feature_id', 'relationship' => 'none', ), 'feature_name' => array( 'label' => 'Sequence', 'alter' => array( 'alter_text' => 0, 'text' => '', 'make_link' => 1, 'path' => 'ID[feature_id]', 'link_class' => '', 'alt' => '', 'prefix' => '', 'suffix' => '', 'target' => '', 'help' => '', 'trim' => 0, 'max_length' => '', 'word_boundary' => 1, 'ellipsis' => 1, 'html' => 0, 'strip_tags' => 0, ), 'empty' => '', 'hide_empty' => 0, 'empty_zero' => 0, 'exclude' => 0, 'id' => 'feature_name', 'table' => 'feature_for_search', 'field' => 'feature_name', 'override' => array( 'button' => 'Override', ), 'relationship' => 'none', ), 'organism_common_name' => array( 'label' => 'Organism', 'alter' => array( 'alter_text' => 0, 'text' => '', 'make_link' => 0, 'path' => '', 'link_class' => '', 'alt' => '', 'prefix' => '', 'suffix' => '', 'target' => '', 'help' => '', 'trim' => 0, 'max_length' => '', 'word_boundary' => 1, 'ellipsis' => 1, 'html' => 0, 'strip_tags' => 0, ), 'empty' => '', 'hide_empty' => 0, 'empty_zero' => 0, 'exclude' => 0, 'id' => 'organism_common_name', 'table' => 'feature_for_search', 'field' => 'organism_common_name', 'relationship' => 'none', ), 'feature_seqlen' => array( 'label' => 'Length', 'alter' => array( 'alter_text' => 1, 'text' => '[feature_seqlen] bp', 'make_link' => 0, 'path' => '', 'link_class' => '', 'alt' => '', 'prefix' => '', 'suffix' => '', 'target' => '', 'help' => '', 'trim' => 0, 'max_length' => '', 'word_boundary' => 1, 'ellipsis' => 1, 'html' => 0, 'strip_tags' => 0, ), 'empty' => '', 'hide_empty' => 0, 'empty_zero' => 0, 'exclude' => 0, 'id' => 'feature_seqlen', 'table' => 'feature_for_search', 'field' => 'feature_seqlen', 'relationship' => 'none', ), 'feature_type' => array( 'label' => 'Type', 'alter' => array( 'alter_text' => 0, 'text' => '', 'make_link' => 0, 'path' => '', 'link_class' => '', 'alt' => '', 'prefix' => '', 'suffix' => '', 'target' => '', 'help' => '', 'trim' => 0, 'max_length' => '', 'word_boundary' => 1, 'ellipsis' => 1, 'html' => 0, 'strip_tags' => 0, ), 'empty' => '', 'hide_empty' => 0, 'empty_zero' => 0, 'exclude' => 0, 'id' => 'feature_type', 'table' => 'feature_for_search', 'field' => 'feature_type', 'relationship' => 'none', ), 'go_term' => array( 'label' => 'GO Term', 'alter' => array( 'alter_text' => 0, 'text' => '', 'make_link' => 0, 'path' => '', 'link_class' => '', 'alt' => '', 'prefix' => '', 'suffix' => '', 'target' => '', 'help' => '', 'trim' => 0, 'max_length' => '', 'word_boundary' => 1, 'ellipsis' => 1, 'html' => 0, 'strip_tags' => 0, ), 'empty' => '', 'hide_empty' => 0, 'empty_zero' => 0, 'exclude' => 0, 'id' => 'go_term', 'table' => 'feature_for_search', 'field' => 'go_term', 'relationship' => 'none', ), 'blast_value' => array( 'label' => 'Blast', 'alter' => array( 'alter_text' => 0, 'text' => '', 'make_link' => 0, 'path' => '', 'link_class' => '', 'alt' => '', 'prefix' => '', 'suffix' => '', 'target' => '', 'help' => '', 'trim' => 1, 'max_length' => '200', 'word_boundary' => 0, 'ellipsis' => 1, 'html' => 0, 'strip_tags' => 0, ), 'empty' => '', 'hide_empty' => 0, 'empty_zero' => 0, 'exclude' => 1, 'id' => 'blast_value', 'table' => 'feature_for_search', 'field' => 'blast_value', 'relationship' => 'none', ), 'kegg_value' => array( 'label' => 'KEGG', 'alter' => array( 'alter_text' => 0, 'text' => '', 'make_link' => 0, 'path' => '', 'link_class' => '', 'alt' => '', 'prefix' => '', 'suffix' => '', 'target' => '', 'help' => '', 'trim' => 1, 'max_length' => '200', 'word_boundary' => 0, 'ellipsis' => 1, 'html' => 0, 'strip_tags' => 0, ), 'empty' => '', 'hide_empty' => 0, 'empty_zero' => 0, 'exclude' => 1, 'id' => 'kegg_value', 'table' => 'feature_for_search', 'field' => 'kegg_value', 'relationship' => 'none', ), 'interpro_value' => array( 'label' => 'Interpro', 'alter' => array( 'alter_text' => 0, 'text' => '', 'make_link' => 0, 'path' => '', 'link_class' => '', 'alt' => '', 'prefix' => '', 'suffix' => '', 'target' => '', 'help' => '', 'trim' => 1, 'max_length' => '200', 'word_boundary' => 1, 'ellipsis' => 1, 'html' => 0, 'strip_tags' => 0, ), 'empty' => '', 'hide_empty' => 0, 'empty_zero' => 0, 'exclude' => 1, 'id' => 'interpro_value', 'table' => 'feature_for_search', 'field' => 'interpro_value', 'relationship' => 'none', ), )); $handler->override_option('arguments', array( 'null' => array( 'default_action' => 'default', 'style_plugin' => 'default_summary', 'style_options' => array(), 'wildcard' => 'all', 'wildcard_substitution' => 'All', 'title' => '', 'breadcrumb' => '', 'default_argument_type' => 'fixed', 'default_argument' => '', 'validate_type' => 'php', 'validate_fail' => 'empty', 'must_not_be' => 0, 'id' => 'null', 'table' => 'views', 'field' => 'null', 'validate_user_argument_type' => 'uid', 'validate_user_roles' => array( '2' => 0, '3' => 0, '5' => 0, '7' => 0, '6' => 0, ), 'relationship' => 'none', 'default_options_div_prefix' => '', 'default_argument_fixed' => '', 'default_argument_user' => 0, 'default_argument_php' => '', 'validate_argument_node_type' => array( 'iframe' => 0, 'news' => 0, 'chado_analysis' => 0, 'chado_feature' => 0, 'chado_library' => 0, 'chado_organism' => 0, 'chado_stock' => 0, 'calendar_event' => 0, 'page' => 0, 'story' => 0, ), 'validate_argument_node_access' => 0, 'validate_argument_nid_type' => 'nid', 'validate_argument_vocabulary' => array( '18' => 0, '14' => 0, '15' => 0, '16' => 0, '17' => 0, '9' => 0, '10' => 0, '11' => 0, '12' => 0, '13' => 0, '5' => 0, '6' => 0, '7' => 0, '8' => 0, ), 'validate_argument_type' => 'tid', 'validate_argument_transform' => 0, 'validate_user_restrict_roles' => 0, 'validate_argument_php' => 'if (count($view->exposed_input)) { return TRUE; }', ), )); $handler->override_option('filters', array( 'feature_name' => array( 'operator' => 'contains', 'value' => '', 'group' => '0', 'exposed' => TRUE, 'expose' => array( 'use_operator' => 1, 'operator' => 'feature_name_op', 'identifier' => 'feature_name', 'label' => 'sequence name', 'optional' => 1, 'remember' => 0, ), 'case' => 0, 'id' => 'feature_name', 'table' => 'feature_for_search', 'field' => 'feature_name', 'relationship' => 'none', ), 'feature_seqlen' => array( 'operator' => '=', 'value' => '', 'group' => '0', 'exposed' => TRUE, 'expose' => array( 'use_operator' => 1, 'operator' => 'feature_seqlen_op', 'identifier' => 'feature_seqlen', 'label' => 'sequence length (bp)', 'optional' => 1, 'remember' => 0, ), 'case' => 1, 'id' => 'feature_seqlen', 'table' => 'feature_for_search', 'field' => 'feature_seqlen', 'relationship' => 'none', ), 'feature_type' => array( 'operator' => '=', 'value' => '', 'group' => '0', 'exposed' => TRUE, 'expose' => array( 'use_operator' => 0, 'operator' => 'feature_type_op', 'identifier' => 'feature_type', 'label' => 'type of sequence', 'optional' => 1, 'remember' => 0, ), 'case' => 1, 'id' => 'feature_type', 'table' => 'feature_for_search', 'field' => 'feature_type', 'relationship' => 'none', ), 'go_term' => array( 'operator' => '=', 'value' => '', 'group' => '0', 'exposed' => TRUE, 'expose' => array( 'use_operator' => 1, 'operator' => 'go_term_op', 'identifier' => 'go_term', 'label' => 'GO term', 'optional' => 1, 'remember' => 0, ), 'case' => 1, 'id' => 'go_term', 'table' => 'feature_for_search', 'field' => 'go_term', 'relationship' => 'none', ), 'organism_common_name' => array( 'operator' => '=', 'value' => '', 'group' => '0', 'exposed' => TRUE, 'expose' => array( 'use_operator' => 0, 'operator' => 'organism_common_name_op', 'identifier' => 'organism_common_name', 'label' => 'organism', 'optional' => 1, 'remember' => 0, ), 'case' => 0, 'id' => 'organism_common_name', 'table' => 'feature_for_search', 'field' => 'organism_common_name', 'relationship' => 'none', ), 'unigene' => array( 'operator' => '=', 'value' => 'Cicer arietinum unigene v1', 'group' => '0', 'exposed' => TRUE, 'expose' => array( 'use_operator' => 0, 'operator' => 'unigene_op', 'identifier' => 'unigene', 'label' => 'belongs to unigene', 'optional' => 1, 'remember' => 0, ), 'case' => 0, 'id' => 'unigene', 'table' => 'feature_for_search', 'field' => 'unigene', 'relationship' => 'none', ), 'interpro_value' => array( 'operator' => 'contains', 'value' => '', 'group' => '0', 'exposed' => TRUE, 'expose' => array( 'use_operator' => 1, 'operator' => 'interpro_value_op', 'identifier' => 'interpro_value', 'label' => 'interpro description', 'optional' => 1, 'remember' => 0, ), 'case' => 0, 'id' => 'interpro_value', 'table' => 'feature_for_search', 'field' => 'interpro_value', 'relationship' => 'none', ), 'blast_value' => array( 'operator' => 'contains', 'value' => '', 'group' => '0', 'exposed' => TRUE, 'expose' => array( 'use_operator' => 1, 'operator' => 'blast_value_op', 'identifier' => 'blast_value', 'label' => 'blast description', 'optional' => 1, 'remember' => 0, ), 'case' => 0, 'id' => 'blast_value', 'table' => 'feature_for_search', 'field' => 'blast_value', 'relationship' => 'none', ), 'kegg_value' => array( 'operator' => 'contains', 'value' => '', 'group' => '0', 'exposed' => TRUE, 'expose' => array( 'use_operator' => 1, 'operator' => 'kegg_value_op', 'identifier' => 'kegg_value', 'label' => 'kegg description', 'optional' => 1, 'remember' => 0, ), 'case' => 0, 'id' => 'kegg_value', 'table' => 'feature_for_search', 'field' => 'kegg_value', 'relationship' => 'none', ), )); $handler->override_option('access', array( 'type' => 'none', )); $handler->override_option('cache', array( 'type' => 'none', )); $handler->override_option('css_class', 'tripal-search-feature'); $handler->override_option('empty', 'exposed_input)) { drupal_set_message("Your search returns no results. Please adjust your search criteria and try again."); } '); $handler->override_option('empty_format', '1'); $handler->override_option('use_pager', '1'); $handler->override_option('style_plugin', 'table'); $handler = $view->new_display('page', 'Page', 'page_1'); $handler->override_option('empty_format', '3'); $handler->override_option('path', 'featureforsearch'); $handler->override_option('menu', array( 'type' => 'normal', 'title' => 'Feature For Search', 'description' => 'Advanced Search for EST and unigenes', 'weight' => '0', 'name' => 'primary-links', )); $handler->override_option('tab_options', array( 'type' => 'none', 'title' => '', 'description' => '', 'weight' => 0, 'name' => 'navigation', ));
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