tripal_views.views.inc 27 KB

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  1. <?php
  2. include('views/handlers/views_handler_join_chado_through_linking.inc');
  3. include('views/handlers/views_handler_join_chado_aggregator.inc');
  4. include('tripal_views.api.inc');
  5. /**
  6. * @defgroup views Views Integration
  7. * @{
  8. * Provide rules for formatting and composition of fields
  9. * @}
  10. */
  11. /**
  12. * @defgroup views_field_handlers Views Field Handlers
  13. * @{
  14. * Provide rules for formatting and composition of fields
  15. * @}
  16. * @ingroup views
  17. */
  18. /**
  19. * @defgroup views_filter_handlers Views Filter Handlers
  20. * @{
  21. * Provide the ability to filter based on specified data
  22. * @}
  23. * @ingroup views
  24. */
  25. /**
  26. * @defgroup views_sort_handlers Views Sort Handlers
  27. * @{
  28. * Provide methods describing how specific data should be sorted
  29. * @}
  30. * @ingroup views
  31. */
  32. /**
  33. * @defgroup views_argument_handlers Views Arguement Handlers
  34. * @{
  35. * Provide the ability to filter pased on arguments in the path of the view
  36. * @}
  37. * @ingroup views
  38. */
  39. /**
  40. * Implements hook_views_handlers()
  41. *
  42. * Purpose: Register all custom handlers with views
  43. * where a handler describes either "the type of field",
  44. * "how a field should be filtered", "how a field should be sorted"
  45. *
  46. * @return
  47. * An array of handler definitions
  48. *
  49. * @ingroup tripal_views
  50. */
  51. function tripal_views_views_handlers() {
  52. return array(
  53. 'info' => array(
  54. 'path' => drupal_get_path('module', 'tripal_views') . '/views/handlers',
  55. ),
  56. 'handlers' => array(
  57. // Custom Chado Handlers
  58. 'chado_views_handler_field_aggregate' => array(
  59. 'parent' => 'chado_views_handler_field',
  60. ),
  61. 'views_handler_filter_chado_select_string' => array(
  62. 'parent' => 'views_handler_filter_string',
  63. ),
  64. 'views_handler_filter_chado_select_cvterm_name' => array(
  65. 'parent' => 'views_handler_filter_string',
  66. ),
  67. // Join Handlers
  68. 'views_handler_join_chado_aggregator' => array(
  69. 'parent' => 'views_join',
  70. ),
  71. 'views_handler_join_chado_through_linking' => array(
  72. 'parent' => 'views_join',
  73. ),
  74. // Other Custom Handlers
  75. 'views_handler_filter_no_results' => array(
  76. 'parent' => 'views_handler_filter'
  77. ),
  78. // Old Handlers
  79. 'views_handler_field_node_optional' => array(
  80. 'parent' => 'views_handler_field_node',
  81. ),
  82. 'views_handler_field_cvterm_name' => array(
  83. 'parent' => 'views_handler_field',
  84. ),
  85. 'views_handler_field_chado_tf_boolean' => array(
  86. 'parent' => 'views_handler_field_boolean',
  87. ),
  88. 'views_handler_field_chado_count' => array(
  89. 'parent' => 'views_handler_field',
  90. ),
  91. 'views_handler_filter_chado_boolean' => array(
  92. 'parent' => 'views_handler_filter_boolean_operator',
  93. ),
  94. 'views_handler_field_chado_rel_by_type' => array(
  95. 'parent' => 'views_handler_field_prerender_list',
  96. ),
  97. 'views_handler_field_dbxref_accession_link' => array(
  98. 'parent' => 'views_handler_field',
  99. ),
  100. 'views_handler_field_readable_date' => array(
  101. 'parent' => 'views_handler_field',
  102. ),
  103. // Wrappers for Default Views Handlers-----
  104. // Field Handlers
  105. 'chado_views_handler_field' => array(
  106. 'parent' => 'views_handler_field'
  107. ),
  108. 'chado_views_handler_field_boolean' => array(
  109. 'parent' => 'views_handler_field_boolean'
  110. ),
  111. 'chado_views_handler_field_counter' => array(
  112. 'parent' => 'views_handler_field_counter'
  113. ),
  114. 'chado_views_handler_field_custom' => array(
  115. 'parent' => 'views_handler_field_custom'
  116. ),
  117. 'chado_views_handler_field_date' => array(
  118. 'parent' => 'views_handler_field_date'
  119. ),
  120. 'chado_views_handler_field_markup' => array(
  121. 'parent' => 'views_handler_field_markup'
  122. ),
  123. 'chado_views_handler_field_math' => array(
  124. 'parent' => 'views_handler_field_math'
  125. ),
  126. 'chado_views_handler_field_numeric' => array(
  127. 'parent' => 'views_handler_field_numeric'
  128. ),
  129. // Filter Handlers
  130. 'chado_views_handler_filter_string' => array(
  131. 'parent' => 'views_handler_filter_string',
  132. ),
  133. 'chado_views_handler_filter_boolean_operator_string' => array(
  134. 'parent' => 'views_handler_filter_boolean_operator_string',
  135. ),
  136. 'chado_views_handler_filter_boolean_operator' => array(
  137. 'parent' => 'views_handler_filter_boolean_operator',
  138. ),
  139. 'chado_views_handler_filter_date' => array(
  140. 'parent' => 'views_handler_filter_date',
  141. ),
  142. 'chado_views_handler_filter_equality' => array(
  143. 'parent' => 'views_handler_filter_equality',
  144. ),
  145. 'chado_views_handler_filter_float' => array(
  146. 'parent' => 'views_handler_filter_float',
  147. ),
  148. 'chado_views_handler_filter_numeric' => array(
  149. 'parent' => 'views_handler_filter_numeric',
  150. ),
  151. 'views_handler_filter_file_upload' => array(
  152. 'parent' => 'views_handler_filter',
  153. ),
  154. // Sort Handlers
  155. 'chado_views_handler_sort' => array(
  156. 'parent' => 'views_handler_sort'
  157. ),
  158. 'chado_views_handler_sort_date' => array(
  159. 'parent' => 'views_handler_sort_date'
  160. ),
  161. 'chado_views_handler_sort_formula' => array(
  162. 'parent' => 'views_handler_sort_formula'
  163. ),
  164. 'chado_views_handler_sort_menu_hierarchy' => array(
  165. 'parent' => 'views_handler_sort_menu_hierarchy'
  166. ),
  167. 'chado_views_handler_sort_random' => array(
  168. 'parent' => 'views_handler_sort_random'
  169. ),
  170. ),
  171. );
  172. }
  173. /**
  174. * Implements hook_views_pre_render
  175. *
  176. * Purpose: Intercepts the view after the query has been executed
  177. * All the results are stored in $view->result
  178. * Looking up the NID here ensures the query is only executed once
  179. * for all stocks in the table.
  180. *
  181. * @todo add if !<chado/drupal same db> around NID portion
  182. *
  183. * @ingroup tripal_views
  184. */
  185. function tripal_views_views_pre_render (&$view) {
  186. //Add Node IDs in to every table that needs them
  187. // @see file: tripal_views.views.inc
  188. tripal_views_add_node_ids_to_view ($view);
  189. // We need to unset the exposed_input for the view so we can repopulate that
  190. // variable. This is necessary if we're using the file_upload_combo
  191. // custom form element which adds the file_path variable to the $_GET after the
  192. // view has populated the $view->exposed_input variable
  193. unset($view->exposed_input);
  194. $query = $view->get_exposed_input(); // retrieves elements in $_GET array
  195. // we want to add to the bottom of the views the form for downloading
  196. // results in other formats (e.g. Excel, FASTA, CSV, etc.). The Views Data
  197. // Export module provides small images at the bottom, but we want to provide
  198. // a more intutitive interface for getting different file formats
  199. $form = drupal_get_form('tripal_views_data_export_download_form',$view,$display_id,$args);
  200. $view->attachment_after = $form;
  201. }
  202. /**
  203. * Adds nid fields to all pertinent view results
  204. *
  205. * Purpose: To add basetable_nid fields to all result arrays of a view
  206. * only if the basetable_nid field is added. This function will only be
  207. * called if chado/drupal are not in the same database (ie: only if
  208. * a join between the base and node table isn't possible.
  209. *
  210. * Note: Supports adding Node IDs to analysis, feature, library, organism, stock
  211. *
  212. * @param $view
  213. * the view object passed to hook_views_pre_render
  214. *
  215. * @return the views object with nids added to the result array
  216. *
  217. * @ingroup tripal_views
  218. */
  219. function tripal_views_add_node_ids_to_view (&$view) {
  220. //-----Analysis----------------------------------------------
  221. if (!empty($view->field['analysis_nid'])) {
  222. // retrieve the analysis_id for each record in the views current page
  223. $analysis_ids = array();
  224. foreach ($view->result as $row_num => $row) {
  225. if (!empty($row->analysis_id)) {
  226. //we're looking at analysis id field already in table
  227. $analysis_ids[$row_num] = $row->analysis_id;
  228. } else {
  229. //we're looking at analysis id added by field handler
  230. $analysis_ids[$row_num] = $row->analysis_analysis_id;
  231. }
  232. }
  233. $unique_analysis_ids = array_filter($analysis_ids);
  234. $unique_analysis_ids = array_unique($unique_analysis_ids);
  235. if (!empty($unique_analysis_ids)) {
  236. // Using the list of analysis_ids from the view
  237. // lookup the NIDs from drupal
  238. // and add that to the results of the view
  239. $sql = "SELECT nid, analysis_id FROM {chado_analysis} WHERE analysis_id IN (".implode(',',$unique_analysis_ids).")";
  240. $resource = db_query($sql);
  241. while ($r = db_fetch_object($resource)) {
  242. $keys = array_keys($analysis_ids, $r->analysis_id);
  243. foreach ($keys as $k) {
  244. $view->result[$k]->analysis_nid = $r->nid;
  245. }
  246. }
  247. } // if there are any analysis'
  248. } //end of case for analysis NID
  249. //-----Feature-----------------------------------------------
  250. if (!empty($view->field['feature_nid'])) {
  251. // retrieve the feature_id for each record in the views current page
  252. $feature_ids = array();
  253. foreach ($view->result as $row_num => $row) {
  254. if (!empty($row->feature_id)) {
  255. //we're looking at feature id field already in table
  256. $feature_ids[$row_num] = $row->feature_id;
  257. } else {
  258. //we're looking at feature id added by field handler
  259. $feature_ids[$row_num] = $row->feature_feature_id;
  260. }
  261. }
  262. $unique_feature_ids = array_filter($feature_ids);
  263. $unique_feature_ids = array_unique($unique_feature_ids);
  264. if (!empty($unique_feature_ids)) {
  265. // Using the list of feature_ids from the view
  266. // lookup the NIDs from drupal
  267. // and add that to the results of the view
  268. $sql = "SELECT nid, feature_id FROM {chado_feature} WHERE feature_id IN (".implode(',',$unique_feature_ids).")";
  269. $resource = db_query($sql);
  270. while ($r = db_fetch_object($resource)) {
  271. $keys = array_keys($feature_ids, $r->feature_id);
  272. foreach ($keys as $k) {
  273. $view->result[$k]->feature_nid = $r->nid;
  274. }
  275. }
  276. } // if there are any features
  277. } //end of case for feature NID
  278. //-----Library-----------------------------------------------
  279. if (!empty($view->field['library_nid'])) {
  280. // retrieve the library_id for each record in the views current page
  281. $library_ids = array();
  282. foreach ($view->result as $row_num => $row) {
  283. if (!empty($row->library_id)) {
  284. //we're looking at library id field already in table
  285. $library_ids[$row_num] = $row->library_id;
  286. } else {
  287. //we're looking at library id added by field handler
  288. $library_ids[$row_num] = $row->library_library_id;
  289. }
  290. }
  291. $unique_library_ids = array_filter($library_ids);
  292. $unique_library_ids = array_unique($unique_library_ids);
  293. if (!empty($unique_library_ids)) {
  294. // Using the list of library_ids from the view
  295. // lookup the NIDs from drupal
  296. // and add that to the results of the view
  297. $sql = "SELECT nid, library_id FROM {chado_library} WHERE library_id IN (".implode(',',$unique_library_ids).")";
  298. $resource = db_query($sql);
  299. while ($r = db_fetch_object($resource)) {
  300. $keys = array_keys($library_ids, $r->library_id);
  301. foreach ($keys as $k) {
  302. $view->result[$k]->library_nid = $r->nid;
  303. }
  304. }
  305. } // if there are libraries
  306. } //end of case for library NID
  307. //-----Organism----------------------------------------------
  308. if (!empty($view->field['organism_nid'])) {
  309. // retrieve the organism_id for each record in the views current page
  310. $organism_ids = array();
  311. foreach ($view->result as $row_num => $row) {
  312. if (!empty($row->organism_id)) {
  313. //we're looking at organism id field already in table
  314. $organism_ids[$row_num] = $row->organism_id;
  315. } else {
  316. //we're looking at organism id added by field handler
  317. $organism_ids[$row_num] = $row->organism_organism_id;
  318. }
  319. }
  320. $unique_organism_ids = array_filter($organism_ids);
  321. $unique_organism_ids = array_unique($unique_organism_ids);
  322. if (!empty($unique_organism_ids)) {
  323. // Using the list of organism_ids from the view
  324. // lookup the NIDs from drupal
  325. // and add that to the results of the view
  326. $sql = "SELECT nid, organism_id FROM {chado_organism} WHERE organism_id IN (".implode(',',$unique_organism_ids).")";
  327. $resource = db_query($sql);
  328. while ($r = db_fetch_object($resource)) {
  329. $keys = array_keys($organism_ids, $r->organism_id);
  330. foreach ($keys as $k) {
  331. $view->result[$k]->organism_nid = $r->nid;
  332. }
  333. }
  334. } // if there are organisms
  335. } //end of case for organism NID
  336. //-----Stock-------------------------------------------------
  337. if (!empty($view->field['stock_nid'])) {
  338. // retrieve the stock_id for each record in the views current page
  339. $stock_ids = array();
  340. foreach ($view->result as $row_num => $row) {
  341. if (!empty($row->stock_id)) {
  342. //we're looking at stock id field already in table
  343. $stock_ids[$row_num] = $row->stock_id;
  344. } else {
  345. //we're looking at stock id added by field handler
  346. $stock_ids[$row_num] = $row->stock_stock_id;
  347. }
  348. }
  349. $unique_stock_ids = array_filter($stock_ids);
  350. $unique_stock_ids = array_unique($unique_stock_ids);
  351. if (!empty($unique_stock_ids)) {
  352. // Using the list of stock_ids from the view
  353. // lookup the NIDs from drupal
  354. // and add that to the results of the view
  355. $sql = "SELECT nid, stock_id FROM {chado_stock} WHERE stock_id IN (".implode(',',$unique_stock_ids).")";
  356. $resource = db_query($sql);
  357. while ($r = db_fetch_object($resource)) {
  358. $keys = array_keys($stock_ids, $r->stock_id);
  359. foreach ($keys as $k) {
  360. $view->result[$k]->stock_nid = $r->nid;
  361. }
  362. }
  363. } //if there are stocks
  364. } //end of case for stock NID
  365. return $view;
  366. }
  367. /**
  368. * Generates a dynamic data array for Views
  369. *
  370. * Purpose: This function is a hook used by the Views module. It populates and
  371. * returns a data array that specifies for the Views module the base table,
  372. * the tables it joins with and handlers. The data array is populated
  373. * using the data stored in the tripal_views tables.
  374. *
  375. * @return a data array formatted for the Views module
  376. *
  377. * @ingroup tripal_views
  378. */
  379. function tripal_views_views_data(){
  380. // Define Global Fields
  381. // Filter handler that lets the admin say:
  382. // "Show no results until they enter search parameters"
  383. $data['views']['search_results'] = array(
  384. 'title' => t('Search Results'),
  385. 'help' => t('Delay results until Apply/Search is clicked by the user.'),
  386. 'filter' => array(
  387. 'handler' => 'views_handler_filter_no_results',
  388. ),
  389. );
  390. // Add Tripal views Integration
  391. // Basically, use tripal_views record to generate the views $data array
  392. $tvi_query = db_query('SELECT * FROM {tripal_views}');
  393. while($tvi_row = db_fetch_object($tvi_query)){
  394. // check to see if this is the lightest (drupal-style) priority setup for this table
  395. // if not then don't use this definition
  396. $lightest_priority_setup = tripal_views_is_lightest_priority_setup($tvi_row->setup_id, $tvi_row->table_name);
  397. if (!$lightest_priority_setup) {
  398. continue;
  399. }
  400. // ids we'll use for queries
  401. $setup_id = $tvi_row->setup_id;
  402. $mview_id = $tvi_row->mview_id;
  403. // holds the base table name and fields
  404. $base_table = '';
  405. $base_fields = array();
  406. $type_prefix = '';
  407. // indicated whether the current table is a base table or not
  408. $is_base_table = $tvi_row->base_table;
  409. // populate the base table name and fields. If an $mview_id is given
  410. // then get the materialized view info, otherwise get the Chado table info
  411. if($mview_id){
  412. $type_prefix = 'MView';
  413. // get the base table name from the materialized view
  414. $sql = "SELECT name, mv_specs FROM {tripal_mviews} WHERE mview_id = %d";
  415. $mview_table = db_fetch_object(db_query($sql,$mview_id));
  416. $base_table = $mview_table->name;
  417. // get the columns in this materialized view. They are separated by commas
  418. // where the first word is the column name and the rest is the type
  419. $columns = explode(",",$mview_table->mv_specs);
  420. foreach ($columns as $column){
  421. $column = trim($column); // trim trailing and leading spaces
  422. preg_match("/^(.*?)\ (.*?)$/",$column,$matches);
  423. $column_name = $matches[1];
  424. $column_type = $matches[2];
  425. $base_fields[$column_name] = array(
  426. 'column_name' => $column_name,
  427. 'type' => $column_type,
  428. );
  429. }
  430. // get the field name and descriptions
  431. $sql = "SELECT * FROM {tripal_views_field} WHERE setup_id=%d";
  432. $query = db_query($sql, $setup_id);
  433. while ($field = db_fetch_object($query)) {
  434. $base_fields[$field->column_name]['name'] = $field->name;
  435. $base_fields[$field->column_name]['help'] = $field->description;
  436. }
  437. }
  438. else {
  439. $type_prefix = 'Chado';
  440. $base_table = $tvi_row->table_name;
  441. // The chado table could be a regular Chado table or a custom table
  442. // in the chado database. Therefore we'll check both
  443. $table_desc = module_invoke_all('chado_'.$base_table.'_schema');
  444. if(!$table_desc){
  445. $table_desc = tripal_get_chado_custom_schema($base_table);
  446. }
  447. $fields = $table_desc['fields'];
  448. foreach($fields as $column => $attrs){
  449. $base_fields[$column] = array(
  450. 'column_name' => $column,
  451. 'type' => $attrs['type'],
  452. );
  453. }
  454. // get the field name and descriptions
  455. $sql = "SELECT * FROM {tripal_views_field} WHERE setup_id=%d";
  456. $query = db_query($sql, $setup_id);
  457. while ($field = db_fetch_object($query)) {
  458. $base_fields[$field->column_name]['name'] = $field->name;
  459. $base_fields[$field->column_name]['help'] = $field->description;
  460. }
  461. }
  462. // Setup the base table info in the data array
  463. $data[$base_table]['table']['group'] = t("$type_prefix $tvi_row->name");
  464. if ($is_base_table) {
  465. $data[$base_table]['table']['base'] = array(
  466. 'group' => "$type_prefix $tvi_row->name",
  467. 'title' => "$type_prefix $tvi_row->name",
  468. 'help' => $tvi_row->comment,
  469. );
  470. } else {
  471. $data[$base_table]['table'] = array(
  472. 'group' => "$type_prefix $tvi_row->name",
  473. 'title' => "$type_prefix $tvi_row->name",
  474. 'help' => $tvi_row->comment,
  475. );
  476. }
  477. // first add the fields
  478. foreach ($base_fields as $column_name => $base_field){
  479. $data[$base_table][$column_name] = array(
  480. 'title' => t($base_field['name']),
  481. 'help' => t($base_field['help']),
  482. 'field' => array(
  483. 'click sortable' => TRUE,
  484. ),
  485. );
  486. // now add the handlers
  487. $sql = "SELECT * FROM {tripal_views_handlers} WHERE setup_id = %d AND column_name = '%s'";
  488. $handlers = db_query($sql,$setup_id,$column_name);
  489. while($handler = db_fetch_object($handlers)){
  490. $data[$base_table][$column_name][$handler->handler_type]['handler'] = $handler->handler_name;
  491. };
  492. }
  493. // now add the joins
  494. $sql = "SELECT * FROM {tripal_views_join} WHERE setup_id = %d";
  495. $joins = db_query($sql,$setup_id);
  496. while($join = db_fetch_object($joins)){
  497. $left_table = $join->left_table;
  498. $left_field = $join->left_field;
  499. $base_field = $join->base_field;
  500. $handler = $join->handler;
  501. // add join entry
  502. $data[$base_table]['table']['join'][$left_table] = array(
  503. 'left_field' => $left_field,
  504. 'field' => $base_field,
  505. );
  506. if ($handler) {
  507. $data[$base_table]['table']['join'][$left_table]['handler'] = $handler;
  508. }
  509. // check to see if the join table is one that correlates with Drupal nodes
  510. // if so, there will be a chado_<table_name> table in the Drupal database
  511. // if there is, then we need to add the linking join information
  512. if(db_table_exists("chado_$left_table")){
  513. // join the mview to the linker table
  514. $data[$base_table]['table']['join']["chado_$left_table"] = array(
  515. 'left_field' => $left_field,
  516. 'field' => $base_field,
  517. );
  518. }
  519. }
  520. }
  521. return $data;
  522. }
  523. /**
  524. *
  525. * @ingroup tripal_views
  526. */
  527. function tripal_views_views_data_alter(&$data) {
  528. $tvi_query = db_query('SELECT * FROM {tripal_views}');
  529. // iterate through the views that we manage
  530. while($tvi_row = db_fetch_object($tvi_query)){
  531. //ids we'll use for queries
  532. $mview_id = $tvi_row->mview_id;
  533. $setup_id = $tvi_row->setup_id;
  534. // iterate through the columns and alter the existing data array for
  535. // joins to other tables
  536. $sql = "SELECT * FROM {tripal_views_join} WHERE setup_id = %d";
  537. $joins = db_query($sql,$setup_id);
  538. while($join = db_fetch_object($joins)){
  539. $left_table = $join->left_table;
  540. $left_field = $join->left_field;
  541. $base_field = $join->base_field;
  542. $base_table = $join->base_table;
  543. // add the recipricol join entries for each column
  544. if(array_key_exists($left_table,$data)){
  545. $data[$left_table]['table']['join'][$base_table] = array(
  546. 'left_field' => $base_field,
  547. 'field' => $left_field,
  548. );
  549. }
  550. // check to see if this table is one that correlates with Drupal nodes
  551. // if so, there will be a chado_<table_name> table in the Drupal database
  552. // if there is, then we need to add the linking join information. We did
  553. // this step in the hook_views_data function above, but now we need
  554. // to add the reciprical joins
  555. if(db_table_exists("chado_$left_table")){
  556. // join the linker table to the mview
  557. if(array_key_exists("chado_$left_table",$data)){
  558. $data["chado_$left_table"]['table']['join'][$base_table] = array(
  559. 'left_field' => $base_field,
  560. 'field' => $left_field,
  561. );
  562. // Join the node table to the view by way of the chado linker table
  563. $data['node']['table']['join'][$base_table] = array(
  564. 'left_table' => "chado_$left_table",
  565. 'left_field' => 'nid',
  566. 'field' => 'nid',
  567. );
  568. }
  569. }
  570. }
  571. }
  572. return $data;
  573. }
  574. /**
  575. * Implementation of hook_views_plugins().
  576. */
  577. function tripal_views_views_plugins() {
  578. $tc_path = drupal_get_path('module', 'tripal_views');
  579. $style_defaults = array(
  580. 'path' => $tc_path . '/views_data_export/plugins',
  581. 'parent' => 'views_data_export',
  582. 'theme' => 'views_data_export',
  583. 'theme path' => $tc_path . '/views_data_export/theme',
  584. 'theme file' => 'tripal_views_data_export.theme.inc',
  585. 'uses row plugin' => FALSE,
  586. 'uses fields' => TRUE,
  587. 'uses options' => TRUE,
  588. 'type' => 'data_export',
  589. );
  590. // add FASTA format as a new style for the existing views_export_data Display
  591. return array(
  592. 'style' => array(
  593. 'views_data_export_fasta' => array(
  594. 'title' => t('FASTA file'),
  595. 'help' => t('Display results in FASTA format. All fields in results are on the definition line while the feature.residues field must be present .'),
  596. 'handler' => 'tripal_views_plugin_style_export_fasta',
  597. // Views Data Export element that will be used to set additional headers when serving the feed.
  598. 'export headers' => array('Content-type: text/plain; charset=utf-8'),
  599. // Views Data Export element mostly used for creating some additional classes and template names.
  600. 'export feed type' => 'fasta',
  601. 'export feed text' => 'FASTA',
  602. 'export feed file' => '%view.fna',
  603. 'export feed icon' => $tc_path . '/views_data_export/images/fasta.png',
  604. 'additional themes' => array(
  605. 'views_data_export_fasta_header' => 'style',
  606. 'views_data_export_fasta_body' => 'style',
  607. 'views_data_export_fasta_footer' => 'style',
  608. ),
  609. 'additional themes base' => 'views_data_export_fasta',
  610. ) + $style_defaults,
  611. ),
  612. );
  613. }
  614. /**
  615. * Implementation of hook_views_pre_view().
  616. */
  617. function tripal_views_views_pre_view(&$view,&$display_id,&$args){
  618. // merge the $_GET and $_POST into the $_GET. This is because
  619. // Views and Views Data Export modules only uses the $_GET variable but
  620. // file uploads require $_POST. We need to make sure these two modules
  621. // have access to everything needed for this view to work properlys
  622. $_GET = array_merge($_GET, $_POST);
  623. }
  624. /**
  625. * Implementation of hook_views_pre_build().
  626. */
  627. /*function tripal_views_views_pre_render(&$view, &$display_id, &$args){
  628. // we want to add to the bottom of the views the form for downloading
  629. // results in other formats (e.g. Excel, FASTA, CSV, etc.). The Views Data
  630. // Export module provides small images at the bottom, but we want to provide
  631. // a more intutitive interface for getting different file formats
  632. $form = drupal_get_form('tripal_views_data_export_download_form',$view,$display_id,$args);
  633. $view->attachment_after = $form;
  634. }*/
  635. /**
  636. *
  637. */
  638. function tripal_views_data_export_download_form(&$form_state, $view,$display_id,$args){
  639. $form = array();
  640. $urls = array();
  641. // get any export_data_export displays
  642. $displays = $view->display;
  643. $options = array();
  644. $default = '';
  645. foreach($displays as $name => $display){
  646. if(preg_match("/^views_data_export/",$name)){
  647. // set the first item as default
  648. if(!$default){
  649. $default = $display->id;
  650. }
  651. $path = $display->display_options['path'];
  652. $urls[$display->id]['path'] = $path;
  653. $urls[$display->id]['query'] = $query;
  654. // add the new item to the options array
  655. $options[$display->id] = $display->display_title;
  656. }
  657. }
  658. // only generate the form if we have views_data_export displays attached
  659. // to this view
  660. if(count($options) > 0){
  661. $form_state['storage']['urls'] = $urls;
  662. $form['#cache'] = TRUE;
  663. // we want the form to redirect to a new window
  664. $form['#attributes']['target'] = "_blank";
  665. // now build the form elements
  666. $form['downloads'] = array(
  667. '#type' => 'fieldset',
  668. '#title' => 'Download Results',
  669. '#collapsible' => TRUE,
  670. '#collapsed' => FALSE
  671. );
  672. $form['downloads']['file_type'] = array(
  673. '#title' => t('File format'),
  674. '#type' => 'radios',
  675. '#options' => $options,
  676. '#required' => TRUE,
  677. '#default_value' => $default,
  678. '#description' => t('Please select a file format to download'),
  679. );
  680. $form['downloads']['submit'] = array(
  681. '#value' => t('Download Results'),
  682. '#type' => 'submit',
  683. );
  684. }
  685. return $form;
  686. }
  687. /**
  688. *
  689. */
  690. function tripal_views_data_export_download_form_submit($form, &$form_state){
  691. $urls = $form_state['storage']['urls'];
  692. $display_id = $form_state['values']['file_type'];
  693. drupal_goto($urls[$display_id]['path'],$urls[$display_id]['query']);
  694. }