zhxd2/tripal @ cebc3dfb332a9d1a0d045a7eb57c7b17b63a6875

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Lacey Sanderson cebc3dfb33 Issue #2567053: Added a chado_query_alter hook to allow complete control over the query.		%!s(int64=9) %!d(string=hai) anos
docs	8a898014b8 Renamed branch from 7.x-1.x to 7.x-2.x. Also merged bug fixes from 6.x-1.x	%!s(int64=11) %!d(string=hai) anos
tripal_analysis	1bf62fee22 Issue #2567053: Added tripal_get_schema_name() function and hooks to allow changing of the chado schema name. Furthermore, I cleaned up all hard-coding of the chado schema name that I could find.	%!s(int64=9) %!d(string=hai) anos
tripal_bulk_loader	afe432ddb1 Issue #2312817: Bulk loader Fields table grouped by row	%!s(int64=9) %!d(string=hai) anos
tripal_contact	bb0d7c55c9 Issue #2567053: Removed hard-coding of chado from .install files	%!s(int64=9) %!d(string=hai) anos
tripal_core	cebc3dfb33 Issue #2567053: Added a chado_query_alter hook to allow complete control over the query.	%!s(int64=9) %!d(string=hai) anos
tripal_cv	cee9402ff6 small fixes	%!s(int64=9) %!d(string=hai) anos
tripal_db	772ede09ca Fixed typo in API includes	%!s(int64=9) %!d(string=hai) anos
tripal_example	3e42625d8b Fixed bug with node permissions	%!s(int64=9) %!d(string=hai) anos
tripal_feature	3e42625d8b Fixed bug with node permissions	%!s(int64=9) %!d(string=hai) anos
tripal_featuremap	bb0d7c55c9 Issue #2567053: Removed hard-coding of chado from .install files	%!s(int64=9) %!d(string=hai) anos
tripal_genetic	772ede09ca Fixed typo in API includes	%!s(int64=9) %!d(string=hai) anos
tripal_library	1bf62fee22 Issue #2567053: Added tripal_get_schema_name() function and hooks to allow changing of the chado schema name. Furthermore, I cleaned up all hard-coding of the chado schema name that I could find.	%!s(int64=9) %!d(string=hai) anos
tripal_natural_diversity	772ede09ca Fixed typo in API includes	%!s(int64=9) %!d(string=hai) anos
tripal_organism	3e42625d8b Fixed bug with node permissions	%!s(int64=9) %!d(string=hai) anos
tripal_phenotype	772ede09ca Fixed typo in API includes	%!s(int64=9) %!d(string=hai) anos
tripal_project	bb0d7c55c9 Issue #2567053: Removed hard-coding of chado from .install files	%!s(int64=9) %!d(string=hai) anos
tripal_pub	1bf62fee22 Issue #2567053: Added tripal_get_schema_name() function and hooks to allow changing of the chado schema name. Furthermore, I cleaned up all hard-coding of the chado schema name that I could find.	%!s(int64=9) %!d(string=hai) anos
tripal_stock	bb0d7c55c9 Issue #2567053: Removed hard-coding of chado from .install files	%!s(int64=9) %!d(string=hai) anos
tripal_views	1bf62fee22 Issue #2567053: Added tripal_get_schema_name() function and hooks to allow changing of the chado schema name. Furthermore, I cleaned up all hard-coding of the chado schema name that I could find.	%!s(int64=9) %!d(string=hai) anos
README.txt	9e3d41c32e Update README.txt	%!s(int64=9) %!d(string=hai) anos

		
			
			
				README.txt
			
		
		
	
			
				What is Tripal?
--------------
Tripal is a collection of open-source freely available Drupal modules 
and is a member of the GMOD family of tools. Tripal serves as a web 
interface for the GMOD Chado database and is designed to reduce the
time and cost required for construction of an online genomic, genetic
and breeding database.


Features
--------------
 - a Chado installer
 - Data loaders for ontologies (controlled vocabularies), GFF files, 
   and FASTA files, publications (from PubMed and AGIRCOLA). 
 - Generic Bulk Data Loader Modules allows for creation of custom 
   loading templates.
 - Drupal nodes (web pages) are automatically generated for organisms,
   genomic features, biological libraries, and stocks
 - Supports creation of materialized views for faster data queries.
 - Display templates are provided for all content types for
   easier customization.
 - Views Integration allows for custom listings of data
 - Content pieces exposed as blocks allowing the use of Panels for 
   custom layouts of Tripal Nodes


Required Modules
--------------
 - Drupal 7.x 
 - Drupal Core Modules: Search, Path and PHP modules.
 - Drupal contributed modules: Views
 - Database containing GMOD Chado Schema (can be installed by the 
   Tripal Core module)
NOTE: A PostgreSQL database is required for installation of the 
Chado Schema

Installation
--------------
Please follow the instructions in the online Tripal User's Guide:
http://tripal.info/tutorials/v2.0/installation

Customization
--------------
Tripal can be used “as is” but also allows for complete customization.
PHP-based template files are provided for all data types to allow for 
precise customizations as required by the community. A well-developed 
Tripal API provides a uniform set of variables and functions for 
accessing any and all data within the Chado database.

			
		