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tripal
Stephen Ficklin eca67392b7 Preparing phylogeny module or release %!s(int64=8) %!d(string=hai) anos
docs 8a898014b8 Renamed branch from 7.x-1.x to 7.x-2.x. Also merged bug fixes from 6.x-1.x %!s(int64=11) %!d(string=hai) anos
tripal_analysis 1bf62fee22 Issue #2567053: Added tripal_get_schema_name() function and hooks to allow changing of the chado schema name. Furthermore, I cleaned up all hard-coding of the chado schema name that I could find. %!s(int64=9) %!d(string=hai) anos
tripal_bulk_loader eca67392b7 Preparing phylogeny module or release %!s(int64=8) %!d(string=hai) anos
tripal_contact bb0d7c55c9 Issue #2567053: Removed hard-coding of chado from .install files %!s(int64=9) %!d(string=hai) anos
tripal_core eca67392b7 Preparing phylogeny module or release %!s(int64=8) %!d(string=hai) anos
tripal_cv a06c4e411d One more update to tripal_insert_cvterm() that was missing code added by Lacey %!s(int64=8) %!d(string=hai) anos
tripal_db 772ede09ca Fixed typo in API includes %!s(int64=9) %!d(string=hai) anos
tripal_example 3e42625d8b Fixed bug with node permissions %!s(int64=9) %!d(string=hai) anos
tripal_feature 429efdd20f Merge branch '7.x-2.x' of https://github.com/tripal/tripal into 7.x-2.x %!s(int64=8) %!d(string=hai) anos
tripal_featuremap ecfec70308 Improved documentation for chado_generate_var and chado_expand_var. Also added a fix to the templates with pagers when a pane is already selected in the URL %!s(int64=9) %!d(string=hai) anos
tripal_genetic ecfec70308 Improved documentation for chado_generate_var and chado_expand_var. Also added a fix to the templates with pagers when a pane is already selected in the URL %!s(int64=9) %!d(string=hai) anos
tripal_library ecfec70308 Improved documentation for chado_generate_var and chado_expand_var. Also added a fix to the templates with pagers when a pane is already selected in the URL %!s(int64=9) %!d(string=hai) anos
tripal_natural_diversity ecfec70308 Improved documentation for chado_generate_var and chado_expand_var. Also added a fix to the templates with pagers when a pane is already selected in the URL %!s(int64=9) %!d(string=hai) anos
tripal_organism af0fd6afce Fix for major upgrades %!s(int64=8) %!d(string=hai) anos
tripal_phenotype 772ede09ca Fixed typo in API includes %!s(int64=9) %!d(string=hai) anos
tripal_phylogeny eca67392b7 Preparing phylogeny module or release %!s(int64=8) %!d(string=hai) anos
tripal_project bb0d7c55c9 Issue #2567053: Removed hard-coding of chado from .install files %!s(int64=9) %!d(string=hai) anos
tripal_pub ecfec70308 Improved documentation for chado_generate_var and chado_expand_var. Also added a fix to the templates with pagers when a pane is already selected in the URL %!s(int64=9) %!d(string=hai) anos
tripal_stock ecfec70308 Improved documentation for chado_generate_var and chado_expand_var. Also added a fix to the templates with pagers when a pane is already selected in the URL %!s(int64=9) %!d(string=hai) anos
tripal_views eca67392b7 Preparing phylogeny module or release %!s(int64=8) %!d(string=hai) anos
README.txt 9e3d41c32e Update README.txt %!s(int64=9) %!d(string=hai) anos

README.txt

What is Tripal?
--------------
Tripal is a collection of open-source freely available Drupal modules
and is a member of the GMOD family of tools. Tripal serves as a web
interface for the GMOD Chado database and is designed to reduce the
time and cost required for construction of an online genomic, genetic
and breeding database.


Features
--------------
- a Chado installer
- Data loaders for ontologies (controlled vocabularies), GFF files,
and FASTA files, publications (from PubMed and AGIRCOLA).
- Generic Bulk Data Loader Modules allows for creation of custom
loading templates.
- Drupal nodes (web pages) are automatically generated for organisms,
genomic features, biological libraries, and stocks
- Supports creation of materialized views for faster data queries.
- Display templates are provided for all content types for
easier customization.
- Views Integration allows for custom listings of data
- Content pieces exposed as blocks allowing the use of Panels for
custom layouts of Tripal Nodes


Required Modules
--------------
- Drupal 7.x
- Drupal Core Modules: Search, Path and PHP modules.
- Drupal contributed modules: Views
- Database containing GMOD Chado Schema (can be installed by the
Tripal Core module)
NOTE: A PostgreSQL database is required for installation of the
Chado Schema

Installation
--------------
Please follow the instructions in the online Tripal User's Guide:
http://tripal.info/tutorials/v2.0/installation

Customization
--------------
Tripal can be used “as is” but also allows for complete customization.
PHP-based template files are provided for all data types to allow for
precise customizations as required by the community. A well-developed
Tripal API provides a uniform set of variables and functions for
accessing any and all data within the Chado database.