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- <?php
- $organism = $variables['node']->organism;
- // expand the organism object to include the libraries from the library
- // table in chado.
- $options = array('return_array' => 1);
- $organism = chado_expand_var($organism, 'table', 'library', $options);
- $libraries = $organism->library;
- if (count($libraries) > 0) {?>
- <div class="tripal_organism-data-block-desc tripal-data-block-desc">The following libraries are associated with this organism.</div> <?php
-
- // the $headers array is an array of fields to use as the colum headers.
- // additional documentation can be found here
- // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
- // This table for the analysis has a vertical header (down the first column)
- // so we do not provide headers here, but specify them in the $rows array below.
- $headers = array('Library Name', 'Type');
-
- // the $rows array contains an array of rows where each row is an array
- // of values for each column of the table in that row. Additional documentation
- // can be found here:
- // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
- $rows = array();
- foreach ($libraries as $library){
-
- $libname = $library->name;
- if (isset($library->nid)) {
- $libname = l($libname, "node/".$library->nid, array('attributes' => array('target' => '_blank')));
- }
-
- $typename = $library->type_id->name;
- if ($typename == 'cdna_library') {
- $typename = 'cDNA';
- }
- else if ($typename == 'bac_library') {
- $typename = 'BAC';
- }
-
- $rows[] = array(
- $libname,
- $typename
- );
- }
-
- // the $table array contains the headers and rows array as well as other
- // options for controlling the display of the table. Additional
- // documentation can be found here:
- // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
- $table = array(
- 'header' => $headers,
- 'rows' => $rows,
- 'attributes' => array(
- 'id' => 'tripal_organism-table-libraries',
- 'class' => 'tripal-data-table'
- ),
- 'sticky' => FALSE,
- 'caption' => '',
- 'colgroups' => array(),
- 'empty' => '',
- );
-
- // once we have our table array structure defined, we call Drupal's theme_table()
- // function to generate the table.
- print theme_table($table);
- }
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