Tightened up the intro text

theme/blast_user_menupage.tpl.php

@@ -7,20 +7,17 @@
 
 ?>
 
-<p>In bioinformatics, BLAST (Basic Local Alignment Search Tool) is an algorithm
-for comparing primary biological sequence information, such as the amino-acid
-sequences of different proteins or the nucleotides of DNA sequences. A BLAST
-search enables a researcher to compare a query sequence with a library or
-database of sequences, and identify library sequences that resemble the query
-sequence above a certain threshold. Different types of BLASTs are available
-according to the query sequences. For example, following the discovery of a
-previously unknown gene in the mouse, a scientist will typically perform a
-BLAST search of the human genome to see if humans carry a similar gene;
-BLAST will identify sequences in the human genome that resemble the mouse
-gene based on similarity of sequence.</p>
-
-<blockquote>Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic
-local alignment search tool. J. Mol. Biol., 215, 403–410.</blockquote>
+<h1> BLAST Search </h1>
+<p>  Search for one or more of your sequences (using BLAST) against the
+available wild peanut genome sequences. First pick a query type
+(nucleotide or protein). You will be able to set search parameters on
+the next page. (We will be adding additional BLAST targets in the coming
+months).
+</p>
+<p>
+Choose the appropriate program based on the Query type and Target
+database type. Please click on the program name to view the search form.
+<p>
 
 <table>
   <tr>
@@ -31,23 +28,23 @@ local alignment search tool. J. Mol. Biol., 215, 403–410.</blockquote>
   <tr>
     <td  rowspan="2">Nucleotide</td>
     <td>Nucleotide</td>
-    <td><?php print l('blastn', 'blast/nucleotide/nucleotide');?>:
+    <td><?php print l('blastn', './blast/nucleotide/nucleotide');?>:
       Search a nucleotide database using a nucleotide query.</td>
   </tr>
   <tr>
     <td>Protein</td>
-    <td><?php print l('blastx', 'blast/nucleotide/protein');?>:
+    <td><?php print l('blastx', './blast/nucleotide/protein');?>:
       Search protein database using a translated nucleotide query.</td>
   </tr>
   <tr>
     <td  rowspan="2">Protein</td>
     <td>Nucleotide</td>
-    <td><?php print l('tblastn', 'blast/protein/nucleotide');?>:
+    <td><?php print l('tblastn', './blast/protein/nucleotide');?>:
       Search translated nucleotide database using a protein query.</td>
   </tr>
   <tr>
     <td>Protein</td>
-    <td><?php print l('blastp', 'blast/protein/protein');?>:
+    <td><?php print l('blastp', './blast/protein/protein');?>:
       Search protein database using a protein query.</td>
   </tr>
 </table>