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Changed default example sequence when admin hasn't gone to admin page to match the one given when they do go to the admin page :-)

Lacey Sanderson 8 years ago
parent
commit
fe3154bee9
1 changed files with 34 additions and 2 deletions
  1. 34 2
      includes/blast_ui.form_per_program.inc

+ 34 - 2
includes/blast_ui.form_per_program.inc

@@ -586,7 +586,33 @@ function ajax_blast_ui_perprogram_example_sequence_callback($form, $form_state)
   if ($sequence_type == 'nucleotide') {
     $example_sequence = variable_get('blast_ui_nucleotide_example_sequence', 'sample');
     if ($example_sequence == 'sample') {
-      $example_sequence = 'ggtaagtcctctagtacaaacacccccaatattgtgatataattaaaattatggtaagtcctctagtacaaacacccccaatattgtgatataattaaaattatattcatattctgttgggtaagtcctctagtacaaacacccccaatattgtgatataattaaaattatattcatattctgttgccagaaaaaacacttttaggctatattagagccatcttctttgaagcgttgtcccagaaaaaacacttttaggctatattagagccatcttctttgaagcgttgtcattcatattctgttgccagaaaaaacacttttaggctatattagagccatcttctttgaagcgttgtc';
+      $example_sequence = '>partial lipoxygenase Glyma15g03040
+TTTCGTATGA GATTAAAATG TGTGAAATTT TGTTTGATAG GACATGGGAA
+AGGAAAAGTT GGAAAGGCTA CAAATTTAAG AGGACAAGTG TCGTTACCAA
+CCTTGGGAGC TGGCGAAGAT GCATACGATG TTCATTTTGA ATGGGACAGT
+GACTTCGGAA TTCCCGGTGC ATTTTACATT AAGAACTTCA TGCAAGTTGA
+GTTCTATCTC AAGTCTCTAA CTCTCGAAGA CATTCCAAAC CACGGAACCA
+TTCACTTCGT ATGCAACTCC TGGGTTTACA ACTCAAAATC CTACCATTCT
+GATCGCATTT TCTTTGCCAA CAATGTAAGC TACTTAAATA CTGTTATACA
+TTGTCTAACA TCTTGTTAGA GTCTTGCATG ATGTGTACCG TTTATTGTTG
+TTGTTGAACT TTACCACATG GCATGGATGC AAAAGTTGTT ATACACATAA
+ATTATAATGC AGACATATCT TCCAAGCGAG ACACCGGCTC CACTTGTCAA
+GTACAGAGAA GAAGAATTGA AGAATGTAAG AGGGGATGGA ACTGGTGAGC
+GCAAGGAATG GGATAGGATC TATGATTATG ATGTCTACAA TGACTTGGGC
+GATCCAGATA AGGGTGAAAA GTATGCACGC CCCGTTCTTG GAGGTTCTGC
+CTTACCTTAC CCTCGCAGAG GAAGAACCGG AAGAGGAAAA ACTAGAAAAG
+GTTTCTCACT AGTCACTAAT TTATTACTTT TTAATGTTTG TTTTTAGGCA
+TCTTTTCTGA TGAAATGTAT ACTTTTGATG TTTTTTTGTT TTAGCATAAC
+TGAATTAGTA AAGTGTGTTG TGTTCCTTAG AAGTTAGAAA AGTACTAAGT
+ATAAGGTCTT TGAGTTGTCG TCTTTATCTT AACAGATCCC AACAGTGAGA
+AGCCCAGTGA TTTTGTTTAC CTTCCGAGAG ATGAAGCATT TGGTCACTTG
+AAGTCATCAG ATTTTCTCGT TTATGGAATC AAATCAGTGG CTCAAGACGT
+CTTGCCCGTG TTGACTGATG CGTTTGATGG CAATCTTTTG AGCCTTGAGT
+TTGATAACTT TGCTGAAGTG CGCAAACTCT ATGAAGGTGG AGTTACACTA
+CCTACAAACT TTCTTAGCAA GATCGCCCCT ATACCAGTGG TCAAGGAAAT
+TTTTCGAACT GATGGCGAAC AGTTCCTCAA GTATCCACCA CCTAAAGTGA
+TGCAGGGTAT GCTACATATT TTGAATATGT AGAATATTAT CAATATACTC
+CTGTTTTTAT TCAACATATT TAATCACATG GATGAATTTT TGAACTGTTA';
       tripal_set_message(t('You can set the example sequence through the administrative interface: <a href="@url" target="_blank">Admin Toolbar > Tripal > Extensions > Tripal BLAST User Interface</a>',
         array('@url' => url('admin/tripal/extension/tripal_blast'))));
     }
@@ -594,7 +620,13 @@ function ajax_blast_ui_perprogram_example_sequence_callback($form, $form_state)
   elseif ($sequence_type == 'protein') {
     $example_sequence = variable_get('blast_ui_protein_example_sequence', 'sample');
     if ($example_sequence == 'sample') {
-      $example_sequence = 'MDSKGSSQKGSRLLLLLVVSNLLLCQGVVSTPVCPNGPGNCQVSLRDLFDRAVMVSHYIHDLSSEMFNEFDKRYAQGKGFITMALNSCHTSSLPTPEDKEQAQQTHHEVLMSLILGLLRSWNDPLYHLVTEVRGMKGAPDAILSRAIEIEEENKRLLEGMEMIFGQVIPGAKETEPYPVWSGLPSLQTKDEDARYSAFYNLLHCLRRDSSKIDTYLKLLNCRIIYNNNC';
+      $example_sequence = '>gi|166477|gb|AAA96434.1| resveratrol synthase [Arachis hypogaea]
+MVSVSGIRKVQRAEGPATVLAIGTANPPNCIDQSTYADYYFRVTNSEHMTDLKKKFQRICERTQIKNRHM
+YLTEEILKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGV
+DYELIVLLGLDPCVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLV
+GQALFADGAAAIIIGSDPVPEVEKPIFELVSTDQKLVPGSHGAIGGLLREVGLTFYLNKSVPDIISQNIN
+DALNKAFDPLGISDYNSIFWIAHPGGRAILDQVEQKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLMR
+KRSLEEGLKTTGEGLDWGVLFGFGPGLTIETVVLRSVAI';
       tripal_set_message(t('You can set the example sequence through the administrative interface: <a href="@url" target="_blank">Admin Toolbar > Tripal > Extensions > Tripal BLAST User Interface</a>',
         array('@url' => url('admin/tripal/extension/tripal_blast'))));
     }