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@@ -586,7 +586,33 @@ function ajax_blast_ui_perprogram_example_sequence_callback($form, $form_state)
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if ($sequence_type == 'nucleotide') {
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$example_sequence = variable_get('blast_ui_nucleotide_example_sequence', 'sample');
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if ($example_sequence == 'sample') {
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- $example_sequence = 'ggtaagtcctctagtacaaacacccccaatattgtgatataattaaaattatggtaagtcctctagtacaaacacccccaatattgtgatataattaaaattatattcatattctgttgggtaagtcctctagtacaaacacccccaatattgtgatataattaaaattatattcatattctgttgccagaaaaaacacttttaggctatattagagccatcttctttgaagcgttgtcccagaaaaaacacttttaggctatattagagccatcttctttgaagcgttgtcattcatattctgttgccagaaaaaacacttttaggctatattagagccatcttctttgaagcgttgtc';
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+ $example_sequence = '>partial lipoxygenase Glyma15g03040
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+TTTCGTATGA GATTAAAATG TGTGAAATTT TGTTTGATAG GACATGGGAA
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+AGGAAAAGTT GGAAAGGCTA CAAATTTAAG AGGACAAGTG TCGTTACCAA
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+CCTTGGGAGC TGGCGAAGAT GCATACGATG TTCATTTTGA ATGGGACAGT
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+GACTTCGGAA TTCCCGGTGC ATTTTACATT AAGAACTTCA TGCAAGTTGA
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+GTTCTATCTC AAGTCTCTAA CTCTCGAAGA CATTCCAAAC CACGGAACCA
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+TTCACTTCGT ATGCAACTCC TGGGTTTACA ACTCAAAATC CTACCATTCT
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+GATCGCATTT TCTTTGCCAA CAATGTAAGC TACTTAAATA CTGTTATACA
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+TTGTCTAACA TCTTGTTAGA GTCTTGCATG ATGTGTACCG TTTATTGTTG
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+TTGTTGAACT TTACCACATG GCATGGATGC AAAAGTTGTT ATACACATAA
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+ATTATAATGC AGACATATCT TCCAAGCGAG ACACCGGCTC CACTTGTCAA
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+GTACAGAGAA GAAGAATTGA AGAATGTAAG AGGGGATGGA ACTGGTGAGC
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+GCAAGGAATG GGATAGGATC TATGATTATG ATGTCTACAA TGACTTGGGC
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+GATCCAGATA AGGGTGAAAA GTATGCACGC CCCGTTCTTG GAGGTTCTGC
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+CTTACCTTAC CCTCGCAGAG GAAGAACCGG AAGAGGAAAA ACTAGAAAAG
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+GTTTCTCACT AGTCACTAAT TTATTACTTT TTAATGTTTG TTTTTAGGCA
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+TCTTTTCTGA TGAAATGTAT ACTTTTGATG TTTTTTTGTT TTAGCATAAC
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+TGAATTAGTA AAGTGTGTTG TGTTCCTTAG AAGTTAGAAA AGTACTAAGT
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+ATAAGGTCTT TGAGTTGTCG TCTTTATCTT AACAGATCCC AACAGTGAGA
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+AGCCCAGTGA TTTTGTTTAC CTTCCGAGAG ATGAAGCATT TGGTCACTTG
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+AAGTCATCAG ATTTTCTCGT TTATGGAATC AAATCAGTGG CTCAAGACGT
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+CTTGCCCGTG TTGACTGATG CGTTTGATGG CAATCTTTTG AGCCTTGAGT
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+TTGATAACTT TGCTGAAGTG CGCAAACTCT ATGAAGGTGG AGTTACACTA
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+CCTACAAACT TTCTTAGCAA GATCGCCCCT ATACCAGTGG TCAAGGAAAT
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+TTTTCGAACT GATGGCGAAC AGTTCCTCAA GTATCCACCA CCTAAAGTGA
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+TGCAGGGTAT GCTACATATT TTGAATATGT AGAATATTAT CAATATACTC
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+CTGTTTTTAT TCAACATATT TAATCACATG GATGAATTTT TGAACTGTTA';
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tripal_set_message(t('You can set the example sequence through the administrative interface: <a href="@url" target="_blank">Admin Toolbar > Tripal > Extensions > Tripal BLAST User Interface</a>',
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array('@url' => url('admin/tripal/extension/tripal_blast'))));
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}
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@@ -594,7 +620,13 @@ function ajax_blast_ui_perprogram_example_sequence_callback($form, $form_state)
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elseif ($sequence_type == 'protein') {
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$example_sequence = variable_get('blast_ui_protein_example_sequence', 'sample');
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if ($example_sequence == 'sample') {
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- $example_sequence = 'MDSKGSSQKGSRLLLLLVVSNLLLCQGVVSTPVCPNGPGNCQVSLRDLFDRAVMVSHYIHDLSSEMFNEFDKRYAQGKGFITMALNSCHTSSLPTPEDKEQAQQTHHEVLMSLILGLLRSWNDPLYHLVTEVRGMKGAPDAILSRAIEIEEENKRLLEGMEMIFGQVIPGAKETEPYPVWSGLPSLQTKDEDARYSAFYNLLHCLRRDSSKIDTYLKLLNCRIIYNNNC';
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+ $example_sequence = '>gi|166477|gb|AAA96434.1| resveratrol synthase [Arachis hypogaea]
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+MVSVSGIRKVQRAEGPATVLAIGTANPPNCIDQSTYADYYFRVTNSEHMTDLKKKFQRICERTQIKNRHM
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+YLTEEILKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGV
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+DYELIVLLGLDPCVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLV
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+GQALFADGAAAIIIGSDPVPEVEKPIFELVSTDQKLVPGSHGAIGGLLREVGLTFYLNKSVPDIISQNIN
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+DALNKAFDPLGISDYNSIFWIAHPGGRAILDQVEQKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLMR
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+KRSLEEGLKTTGEGLDWGVLFGFGPGLTIETVVLRSVAI';
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tripal_set_message(t('You can set the example sequence through the administrative interface: <a href="@url" target="_blank">Admin Toolbar > Tripal > Extensions > Tripal BLAST User Interface</a>',
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array('@url' => url('admin/tripal/extension/tripal_blast'))));
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}
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