 Robb, Sofia
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2ac75d92dc
reverted to multiloop and corrected counter bug
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8 gadi atpakaļ |
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Robb, Sofia
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39eaa1aa5e
removed one loop added added printGFF_parent_children function
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8 gadi atpakaļ |
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Robb, Sofia
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8d7b7dc2bc
removed second loop and added printGFF_parent_children function
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8 gadi atpakaļ |
 Lacey Sanderson
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42d2fdd5a5
Fixing a small bug I introduced...
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8 gadi atpakaļ |
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Lacey Sanderson
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f5ef0e6d19
Added more documentation
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8 gadi atpakaļ |
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Lacey Sanderson
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f74e12185b
Changing tabs to spaces...
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8 gadi atpakaļ |
 Ethy Cannon
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a90ec3762c
merged with 7.x-1.x
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8 gadi atpakaļ |
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Lacey Sanderson
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d294206893
Fixed sequence validation error.
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8 gadi atpakaļ |
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Robb, Sofia
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514453cab1
added convert_tsv2gff3 function
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8 gadi atpakaļ |
|
Lacey Sanderson
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f540948e0b
Provide a default for blast_threads so that users who upgrade don't have broken blast runs until they update their admin preferences.
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9 gadi atpakaļ |
 E.Cannon
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34a5265b76
Merge branch '7.x-1.x' of https://github.com/LegumeFederation/tripal_blast into 7.x-1.x
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9 gadi atpakaļ |
|
Lacey Sanderson
|
1f3911220c
Recent jobs sorted to show most recent first.
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9 gadi atpakaļ |
|
Lacey Sanderson
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0b2634c085
Added db storage of blast job details and cleaned up different implementations previously storing data (edit & resubmit used drupal variables and recent jobs used session) to use the new database saved details.
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9 gadi atpakaļ |
 prateekgta
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490d7d9062
updated blast_ui.services.inc, remove word size 2 in option, set num_threads option in command
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9 gadi atpakaļ |
|
Lacey Sanderson
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094eb6ad54
removed debugging statements...
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9 gadi atpakaļ |
|
Lacey Sanderson
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ec4a1cee12
Fixed submission of advanced options (broken by nesting of blast form
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9 gadi atpakaļ |
|
Lacey Sanderson
|
e2339248f7
Changes to the blast report page including clean-up of the hit vis. code
|
9 gadi atpakaļ |
|
Lacey Sanderson
|
d4a441473f
A couple of bug fixes and reformating of the recent jobs display into an easy to read table.
|
9 gadi atpakaļ |
|
E.Cannon
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c8da62b1f0
tweaked recent jobs list
|
9 gadi atpakaļ |
|
E.Cannon
|
01412d1109
added function get_recent_jobs()
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9 gadi atpakaļ |
|
E.Cannon
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9d0315b020
strips the extension off the blast database path, if any
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9 gadi atpakaļ |
|
E.Cannon
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714f791a1e
Fixed paths, displays formatter command for debugging purposes
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9 gadi atpakaļ |
 Deepak Bitragunta
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5dbaac381f
Edit-Resubmit and recent jobs funcitonality added. Also, improvements on the output page
|
10 gadi atpakaļ |
|
Deepak Bitragunta
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2d90f992af
Code changes done for BLAST visualization and minor bugs & enhancements
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10 gadi atpakaļ |
|
Lacey Sanderson
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f0ac24a22c
Bug Fix: If users uploaded query files with spaces, the blast command would fail b/c of too many arguements; added quotes around query filename to fix this.
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10 gadi atpakaļ |
|
Lacey Sanderson
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e93e589573
Fixed BLAST Path configuration to work if no path is selected.
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10 gadi atpakaļ |
|
Lacey Sanderson
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a506426f65
Re-introducted Deepak's changes
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10 gadi atpakaļ |
|
Lacey Sanderson
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b87c9d28d6
Added link-out functionality
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10 gadi atpakaļ |
|
Lacey Sanderson
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30d3911339
Added interface for configuring Link-outs. Still doesn't actually link out in BLAST results.
|
10 gadi atpakaļ |
|
Lacey Sanderson
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ec260c7170
Updated get blast database API function to respect node access to that we can use any node access module to restrict the blast databases available :) Tested & works with Simple Access
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10 gadi atpakaļ |
