 E.Cannon
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6a260f4cc8
Merged Lacey's changes
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9 anni fa |
 Lacey Sanderson
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75023fa46c
Removed the double load of the blast results page since it seems to be unnecessary.
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9 anni fa |
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Lacey Sanderson
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0b2634c085
Added db storage of blast job details and cleaned up different implementations previously storing data (edit & resubmit used drupal variables and recent jobs used session) to use the new database saved details.
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9 anni fa |
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Lacey Sanderson
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86753a3f57
Consolidated original link-outs with the work done by Peanutbase/LegumeInfo; Debugged JBrowse/GBrowse link-outs and made the code more readable.
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9 anni fa |
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Lacey Sanderson
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729bc7069e
Cleaned up the code for displaying blast jobs to improve readability including add in documentation for both the visualization and link-out functionality.
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9 anni fa |
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Lacey Sanderson
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402bb1f00d
Redid the job_id encoding to make the URLs prettier while still obfuscating it so researchers are not tempted to look at blast results not their own...
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9 anni fa |
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Lacey Sanderson
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844bc1b784
fixed resubmit link target
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9 anni fa |
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Lacey Sanderson
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e2339248f7
Changes to the blast report page including clean-up of the hit vis. code
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9 anni fa |
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Lacey Sanderson
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d4a441473f
A couple of bug fixes and reformating of the recent jobs display into an easy to read table.
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9 anni fa |
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E.Cannon
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0a91799184
Uses get_recent_jobs()
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9 anni fa |
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E.Cannon
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5ee0c63cd8
Removed debug statements
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9 anni fa |
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E.Cannon
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9a2925db2e
Modified linkout handling to accommodate custom linkouts
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9 anni fa |
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E.Cannon
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69b34a6d42
Restored orginal functionality of GBrowse linkouts
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9 anni fa |
 Ethy Cannon
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94b811a995
re-restored linkout functionality
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9 anni fa |
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Ethy Cannon
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0616ac9200
Intermediate checkin; many repairs to advanced options
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9 anni fa |
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E.Cannon
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c3d0095adc
Reformatted results page, added hit visualization
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9 anni fa |
 Deepak Bitragunta
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5dbaac381f
Edit-Resubmit and recent jobs funcitonality added. Also, improvements on the output page
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10 anni fa |
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Deepak Bitragunta
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2d90f992af
Code changes done for BLAST visualization and minor bugs & enhancements
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10 anni fa |
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Lacey Sanderson
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f394fc20bd
Issue #2356593: Added the ability to link to GBrowse/JBrowse instances. Furthermore, added hook_blast_linkout_info() to allow other developers to create their own complex link types
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10 anni fa |
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Lacey Sanderson
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17900b1fc2
Amended 'no results' message to exist outside the table and be highlighted in red. This solution did take into account that multiple query seq. might have been submitted with only some not having hits in which case a comma-separated list of those without hits is shown.
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10 anni fa |
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Lacey Sanderson
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4e5bdd9c2f
Fixed some bugs releated to link-outs and added configuration for target upload.
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10 anni fa |
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Lacey Sanderson
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b87c9d28d6
Added link-out functionality
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10 anni fa |
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Lacey Sanderson
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2e64e6f2d9
Re-factored BLAST submission form for code-reuse
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10 anni fa |
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Deepak Bitragunta
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992b75d4f4
Code fix to display no hits message
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10 anni fa |
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Lacey Sanderson
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6cda5d80d3
Fixed BL_ORD_ID bug (Issue #2319493)
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10 anni fa |
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Lacey Sanderson
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698e6182c2
Added additional download formats including HTML and TSV
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10 anni fa |
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Lacey Sanderson
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a6d80bb2ba
Switched both nucleotide and protein BLAST forms over to use Tripal jobs.
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10 anni fa |
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Lacey Sanderson
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ffe0f661a9
Cleaned up documentation for upcomming collaboration :)
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10 anni fa |
 root
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63075d1d4c
Fixed some little bugs from a pre-mature commit...
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10 anni fa |
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Lacey Sanderson
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00b915a82d
Added protein BLAST and re-vamped the results page to be a tabular listing generated from XML
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10 anni fa |
