 Lacey Sanderson
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408cacb63f
Switch cvitjs to use the libraries api.
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%!s(int64=6) %!d(string=hai) anos |
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Lacey Sanderson
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0b2634c085
Added db storage of blast job details and cleaned up different implementations previously storing data (edit & resubmit used drupal variables and recent jobs used session) to use the new database saved details.
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%!s(int64=9) %!d(string=hai) anos |
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Lacey Sanderson
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86753a3f57
Consolidated original link-outs with the work done by Peanutbase/LegumeInfo; Debugged JBrowse/GBrowse link-outs and made the code more readable.
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%!s(int64=9) %!d(string=hai) anos |
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Lacey Sanderson
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402bb1f00d
Redid the job_id encoding to make the URLs prettier while still obfuscating it so researchers are not tempted to look at blast results not their own...
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%!s(int64=9) %!d(string=hai) anos |
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Lacey Sanderson
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d4a441473f
A couple of bug fixes and reformating of the recent jobs display into an easy to read table.
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%!s(int64=9) %!d(string=hai) anos |
 E.Cannon
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4b8dfd21ae
Added code to start web services
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%!s(int64=9) %!d(string=hai) anos |
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E.Cannon
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364887db6d
Includes file for custom linkout handling
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%!s(int64=9) %!d(string=hai) anos |
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E.Cannon
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f2705c7173
removed hard-coded example; now uses example set in module configuration as it should
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%!s(int64=9) %!d(string=hai) anos |
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E.Cannon
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f61b6eecb0
Had to comment-out linkout code for now. Need to resolve Lacey's and Deepak's approaches to linkouts for hits.
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%!s(int64=9) %!d(string=hai) anos |
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E.Cannon
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8f9caca646
Support for using a job id
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%!s(int64=9) %!d(string=hai) anos |
 Deepak Bitragunta
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2d90f992af
Code changes done for BLAST visualization and minor bugs & enhancements
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%!s(int64=9) %!d(string=hai) anos |
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Lacey Sanderson
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f394fc20bd
Issue #2356593: Added the ability to link to GBrowse/JBrowse instances. Furthermore, added hook_blast_linkout_info() to allow other developers to create their own complex link types
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%!s(int64=10) %!d(string=hai) anos |
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Lacey Sanderson
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0ca91becb2
Added help & configure links to module
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%!s(int64=10) %!d(string=hai) anos |
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Lacey Sanderson
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b063c68c1f
Changes to the BLASTDB node so that it displays it's data on the node page & saves the new more readable db type
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%!s(int64=10) %!d(string=hai) anos |
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Lacey Sanderson
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9d08f308f5
Added better launchpad pages
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%!s(int64=10) %!d(string=hai) anos |
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Lacey Sanderson
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2e64e6f2d9
Re-factored BLAST submission form for code-reuse
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%!s(int64=10) %!d(string=hai) anos |
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Lacey Sanderson
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531e8b9c26
Added admin UI to set example sequences
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%!s(int64=10) %!d(string=hai) anos |
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Lacey Sanderson
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b465dbb777
Changed example sequence button to checkbox & added in varible for administrator to set the example sequence (UI not yet implemented)
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%!s(int64=10) %!d(string=hai) anos |
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Lacey Sanderson
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a6d80bb2ba
Switched both nucleotide and protein BLAST forms over to use Tripal jobs.
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%!s(int64=10) %!d(string=hai) anos |
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Lacey Sanderson
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7009cadc5e
Added API which currently only includes pulling out options...
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%!s(int64=10) %!d(string=hai) anos |
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Lacey Sanderson
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ffe0f661a9
Cleaned up documentation for upcomming collaboration :)
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%!s(int64=10) %!d(string=hai) anos |
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Lacey Sanderson
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00b915a82d
Added protein BLAST and re-vamped the results page to be a tabular listing generated from XML
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%!s(int64=10) %!d(string=hai) anos |
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Lacey Sanderson
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82938536b4
Fixed the hard-coded path in result display, set the title based on the database name, changed the blast command to use full path of database and sorted the blast databases by name
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%!s(int64=10) %!d(string=hai) anos |
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Lacey Sanderson
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14601e7da4
Clean repository to fix repository issues
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%!s(int64=10) %!d(string=hai) anos |
