 Lacey Sanderson
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0ac8c03c09
Updated checking for file ending suffix.
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%!s(int64=4) %!d(string=hai) anos |
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Lacey Sanderson
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1ddde1ebdb
Remove unused default.
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%!s(int64=4) %!d(string=hai) anos |
 E.Cannon
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63e992090a
Don't show warning unless there is warning text to display
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%!s(int64=6) %!d(string=hai) anos |
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E.Cannon
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d7fad49906
Added warning text block.
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%!s(int64=6) %!d(string=hai) anos |
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E.Cannon
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4cc3b6a8f0
Added placeholder for warning text
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%!s(int64=6) %!d(string=hai) anos |
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E.Cannon
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1d9ffee43d
Changes to FASTA validation: was accepting bad characters, and changed true/false logic in validate_fasta_sequence() and blast_ui_per_blast_program_form_validate() so that validate=true
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%!s(int64=6) %!d(string=hai) anos |
 Abdullah Almsaeed
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d1d4d849a2
Check if the upload field is available before loading the file
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%!s(int64=8) %!d(string=hai) anos |
 Lacey-Anne Sanderson
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69dd7371ce
Merge pull request #7 from njbooher/fix-tmp-directory
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%!s(int64=8) %!d(string=hai) anos |
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Lacey-Anne Sanderson
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5a1de0cd2e
Merge pull request #8 from njbooher/fix-output-directory
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%!s(int64=8) %!d(string=hai) anos |
 Lacey Sanderson
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434279e7a4
Improved blast submission process.
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%!s(int64=8) %!d(string=hai) anos |
 Nick Booher
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94c98320dd
Use tripal_get_files_dir to get the output directory
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%!s(int64=8) %!d(string=hai) anos |
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Nick Booher
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316ee0114f
Save the query file to the Drupal temp file directory rather than /tmp
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%!s(int64=8) %!d(string=hai) anos |
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Lacey Sanderson
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f74e12185b
Changing tabs to spaces...
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%!s(int64=8) %!d(string=hai) anos |
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Lacey Sanderson
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fe3154bee9
Changed default example sequence when admin hasn't gone to admin page to match the one given when they do go to the admin page :-)
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%!s(int64=8) %!d(string=hai) anos |
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Lacey Sanderson
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06587be49e
Ensure there is always a default example sequence and tell administrators how to change it.
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%!s(int64=8) %!d(string=hai) anos |
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E.Cannon
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6a260f4cc8
Merged Lacey's changes
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%!s(int64=9) %!d(string=hai) anos |
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Lacey Sanderson
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0b2634c085
Added db storage of blast job details and cleaned up different implementations previously storing data (edit & resubmit used drupal variables and recent jobs used session) to use the new database saved details.
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%!s(int64=9) %!d(string=hai) anos |
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E.Cannon
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bf0f5ab54b
No mention of uploading target sequence if disabled
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%!s(int64=9) %!d(string=hai) anos |
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Lacey Sanderson
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402bb1f00d
Redid the job_id encoding to make the URLs prettier while still obfuscating it so researchers are not tempted to look at blast results not their own...
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%!s(int64=9) %!d(string=hai) anos |
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Lacey Sanderson
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ec4a1cee12
Fixed submission of advanced options (broken by nesting of blast form
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%!s(int64=9) %!d(string=hai) anos |
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Lacey Sanderson
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e2339248f7
Changes to the blast report page including clean-up of the hit vis. code
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%!s(int64=9) %!d(string=hai) anos |
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Lacey Sanderson
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d4a441473f
A couple of bug fixes and reformating of the recent jobs display into an easy to read table.
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%!s(int64=9) %!d(string=hai) anos |
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E.Cannon
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f83f264b5e
removed target fasta upload; needs to be turned off/on by option
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%!s(int64=9) %!d(string=hai) anos |
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E.Cannon
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02a2c922d0
uses get_recent_jobs() to display job list
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%!s(int64=9) %!d(string=hai) anos |
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E.Cannon
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9d9a5df51d
modified linkout code to accommodate custom linkouts
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%!s(int64=9) %!d(string=hai) anos |
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E.Cannon
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5cf53e82dc
Added .fas as a valid upload file extension
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%!s(int64=9) %!d(string=hai) anos |
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E.Cannon
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6c701fadb7
removed newline from query def
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%!s(int64=9) %!d(string=hai) anos |
 Ethy Cannon
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be76f747d0
tweaks
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%!s(int64=9) %!d(string=hai) anos |
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Ethy Cannon
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0616ac9200
Intermediate checkin; many repairs to advanced options
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%!s(int64=9) %!d(string=hai) anos |
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E.Cannon
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f61b6eecb0
Had to comment-out linkout code for now. Need to resolve Lacey's and Deepak's approaches to linkouts for hits.
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%!s(int64=9) %!d(string=hai) anos |
