 E.Cannon
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a828bf3582
Added support for qRange/culling_limit option
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E.Cannon
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283ebb4eef
initial import
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E.Cannon
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4b8dfd21ae
Added code to start web services
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E.Cannon
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9a2925db2e
Modified linkout handling to accommodate custom linkouts
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E.Cannon
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c574ac765b
Added a custom linkout type
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E.Cannon
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9d9a5df51d
modified linkout code to accommodate custom linkouts
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E.Cannon
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364887db6d
Includes file for custom linkout handling
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E.Cannon
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9d0315b020
strips the extension off the blast database path, if any
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E.Cannon
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5cf53e82dc
Added .fas as a valid upload file extension
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E.Cannon
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6c701fadb7
removed newline from query def
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E.Cannon
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d986a76b04
Fixed paths
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E.Cannon
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426cb44a2f
Made the saving of the various module settings variables more explicit
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E.Cannon
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cd0b1ce051
Cleaned out unused code left over from its life in MaizeGDB
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E.Cannon
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65c13e36ec
Removed debugging code
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E.Cannon
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f2705c7173
removed hard-coded example; now uses example set in module configuration as it should
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E.Cannon
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69b34a6d42
Restored orginal functionality of GBrowse linkouts
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E.Cannon
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416e71c3be
Removed all references to gbrowse_track in blastdb table and node
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E.Cannon
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c51554da01
Fixed typo and name of db
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E.Cannon
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02b1ea7969
Made repairs to GBrowse linkouts
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 Ethy Cannon
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be76f747d0
tweaks
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Ethy Cannon
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94b811a995
re-restored linkout functionality
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Ethy Cannon
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0616ac9200
Intermediate checkin; many repairs to advanced options
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E.Cannon
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714f791a1e
Fixed paths, displays formatter command for debugging purposes
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E.Cannon
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9973392985
Restored linkout functionality
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E.Cannon
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f61b6eecb0
Had to comment-out linkout code for now. Need to resolve Lacey's and Deepak's approaches to linkouts for hits.
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E.Cannon
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2174700c9d
Added BLAST database path
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E.Cannon
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f03be9e9c7
Tightened up the intro text
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E.Cannon
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7af26be2ea
Modified paths, added support for persistent results by job id
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E.Cannon
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e00ace61a7
fixed alignment coordinates
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E.Cannon
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c3d0095adc
Reformatted results page, added hit visualization
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