 E.Cannon
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c6c5de5ad2
Fixed bug in gap handling and removed culling_limit
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vor 7 Jahren |
|
E.Cannon
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ea893582bf
Renamed getGap() to _set_protein_gap() to clarify function; removed advanced option qrange, which was miss-implemented as culling_limit and which doesn't appear to be legit BLAST parameter in any case.
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vor 7 Jahren |
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E.Cannon
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87d31105cf
Renamed getGap() to _set_match_mismatch() for clarity of purpose
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vor 7 Jahren |
|
E.Cannon
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cf449a8b40
Code reformatted preparatory to later changes
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vor 7 Jahren |
 Lacey Sanderson
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434279e7a4
Improved blast submission process.
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vor 8 Jahren |
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Lacey Sanderson
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9558927bb7
Limited number of results shown to reduce WSOD shown to users and added empty option to max_target_seq options.
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vor 8 Jahren |
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Lacey Sanderson
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f74e12185b
Changing tabs to spaces...
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vor 8 Jahren |
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Lacey Sanderson
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2e41f564bf
Changed forms to use defaults set out in admin page, if they are provided
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vor 8 Jahren |
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E.Cannon
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34a5265b76
Merge branch '7.x-1.x' of https://github.com/LegumeFederation/tripal_blast into 7.x-1.x
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vor 9 Jahren |
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Lacey Sanderson
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0b2634c085
Added db storage of blast job details and cleaned up different implementations previously storing data (edit & resubmit used drupal variables and recent jobs used session) to use the new database saved details.
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vor 9 Jahren |
 prateekgta
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490d7d9062
updated blast_ui.services.inc, remove word size 2 in option, set num_threads option in command
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vor 9 Jahren |
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Lacey Sanderson
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402bb1f00d
Redid the job_id encoding to make the URLs prettier while still obfuscating it so researchers are not tempted to look at blast results not their own...
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vor 9 Jahren |
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Lacey Sanderson
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094eb6ad54
removed debugging statements...
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vor 9 Jahren |
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Lacey Sanderson
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ec4a1cee12
Fixed submission of advanced options (broken by nesting of blast form
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vor 9 Jahren |
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Lacey Sanderson
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d4a441473f
A couple of bug fixes and reformating of the recent jobs display into an easy to read table.
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vor 9 Jahren |
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E.Cannon
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5245549bf0
fixed typo
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vor 9 Jahren |
|
prateekgta
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da8dad34f6
changes in _get_word_size by prateek
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vor 9 Jahren |
|
E.Cannon
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a828bf3582
Added support for qRange/culling_limit option
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vor 9 Jahren |
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E.Cannon
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65c13e36ec
Removed debugging code
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vor 10 Jahren |
 Ethy Cannon
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0616ac9200
Intermediate checkin; many repairs to advanced options
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vor 10 Jahren |
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E.Cannon
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f61b6eecb0
Had to comment-out linkout code for now. Need to resolve Lacey's and Deepak's approaches to linkouts for hits.
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vor 10 Jahren |
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E.Cannon
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17c0469758
Fixed option values, tightened up code
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vor 10 Jahren |
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Lacey Sanderson
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feeaeb6d40
Added E-value & max sequence advanced options for blastx & tblastn so it felt like we actually support them ;)
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vor 10 Jahren |
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Lacey Sanderson
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2e64e6f2d9
Re-factored BLAST submission form for code-reuse
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vor 10 Jahren |
