array('data' => '#', 'class' => array('number')),
'query' => array('data' => 'Query Name', 'class' => array('query')),
'hit' => array('data' => 'Hit Name', 'class' => array('hit')),
'evalue' => array('data' => 'E-Value', 'class' => array('evalue')),
'arrow-col' => array('data' => '', 'class' => array('arrow-col'))
);
$rows = array();
$count = 0;
foreach($xml->{'BlastOutput_iterations'}->children() as $iteration) {
foreach($iteration->{'Iteration_hits'}->children() as $hit) {
if (is_object($hit)) {
$count +=1;
$zebra_class = ($count % 2 == 0) ? 'even' : 'odd';
// SIMPLY SUMMARY ROW
$hit_name = $hit->Hit_def;
if (preg_match('/(\w+)/', $hit_name, $matches)) {
$hit_name = $matches[1];
}
$score = $hit->Hit_hsps->Hsp->Hsp_score;
$evalue = $hit->Hit_hsps->Hsp->Hsp_evalue;
$query_name = $iteration->{'Iteration_query-def'};
$row = array(
'data' => array(
'number' => array('data' => $count, 'class' => array('number')),
'query' => array('data' => $query_name, 'class' => array('query')),
'hit' => array('data' => l($hit_name,''), 'class' => array('hit')),
'evalue' => array('data' => $evalue, 'class' => array('evalue')),
'arrow-col' => array('data' => '', 'class' => array('arrow-col'))
),
'class' => array('result-summary')
);
$rows[] = $row;
// ALIGNMENT ROW (collapsed by default)
// Process HSPs
$HSPs = array();
foreach ($hit->{'Hit_hsps'}->children() as $hsp_xml) {
$HSPs[] = (array) $hsp_xml;
}
$row = array(
'data' => array(
'number' => '',
'query' => array(
'data' => theme('blast_report_alignment_row', array('HSPs' => $HSPs)),
'colspan' => 4,
)
),
'class' => array('alignment-row', $zebra_class),
'no_striping' => TRUE
);
$rows[] = $row;
}
}
}
print theme('table', array(
'header' => $header,
'rows' => $rows,
'attributes' => array('id' => 'blast_report'),
));
?>