BLASTN 2.6.0+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: Citrus_sinensis-scaffold00001.fasta
1 sequences; 5,927,163 total letters
Query= orange1.1g015632m PAC:18136217 (mRNA) Citrus sinensis
Length=2075
Score E
Sequences producing significant alignments: (Bits) Value
scaffold00001 length=5927163 848 0.0
>scaffold00001 length=5927163
Length=5927163
Score = 848 bits (441), Expect = 0.0
Identities = 441/441 (100%), Gaps = 0/441 (0%)
Strand=Plus/Plus
Query 1 GCAAGTAGGGAGACGGAGTGGAGACTGGAGAGGCGACTCGAAAATGATGAAAGGGGAGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058460 GCAAGTAGGGAGACGGAGTGGAGACTGGAGAGGCGACTCGAAAATGATGAAAGGGGAGGA 4058519
Query 61 GGTGGGGGCCCAGGGGAGGTTTGAACGGTCAAAAAGAAGAAACAAAATGAAGGACATAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058520 GGTGGGGGCCCAGGGGAGGTTTGAACGGTCAAAAAGAAGAAACAAAATGAAGGACATAAA 4058579
Query 121 CAAATAAAATAGAATGGTGTTGGGCTCCGTGTGTCTGCCGTTGTTGACTCACTCACCGCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058580 CAAATAAAATAGAATGGTGTTGGGCTCCGTGTGTCTGCCGTTGTTGACTCACTCACCGCC 4058639
Query 181 TGTGTcaccaccaccaccaccaATAGCATTGCCATTTTCCACTTGCCACCATTCGCTCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058640 TGTGTCACCACCACCACCACCAATAGCATTGCCATTTTCCACTTGCCACCATTCGCTCAA 4058699
Query 241 TCAGTCAAAAGAACAGACCAAACCAAACAAAAAActcctctcccttctctctctctctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058700 TCAGTCAAAAGAACAGACCAAACCAAACAAAAAACTCCTCTCCCTTCTCTCTCTCTCTCT 4058759
Query 301 ctctctctTTATCACTTCACAGCATTTCCCCTATCACAGTATACAGATCCATTTATCTGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058760 CTCTCTCTTTATCACTTCACAGCATTTCCCCTATCACAGTATACAGATCCATTTATCTGA 4058819
Query 361 AAGCCGAACAATTTACCtttttaattttttctttttAGTTATTGCGCTTATGGATCTACC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058820 AAGCCGAACAATTTACCTTTTTAATTTTTTCTTTTTAGTTATTGCGCTTATGGATCTACC 4058879
Query 421 CAATTTTTTCACCCGATCGGT 441
|||||||||||||||||||||
Sbjct 4058880 CAATTTTTTCACCCGATCGGT 4058900
Score = 748 bits (389), Expect = 0.0
Identities = 389/389 (100%), Gaps = 0/389 (0%)
Strand=Plus/Plus
Query 1687 GAACTGAAGGGTGTGCCCGTGGATATGTTGGTGAAGCTGATCCCTGAGCATGCAAGAAAA 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061822 GAACTGAAGGGTGTGCCCGTGGATATGTTGGTGAAGCTGATCCCTGAGCATGCAAGAAAA 4061881
Query 1747 CAGTGTGCCTTCCTTGGTTTGTGATTTGGTTCTCCAAAAGTTGAAGCCTGCTCCTTGCAG 1806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061882 CAGTGTGCCTTCCTTGGTTTGTGATTTGGTTCTCCAAAAGTTGAAGCCTGCTCCTTGCAG 4061941
Query 1807 GTTGCAGCTTTGCATAAATATTTGATCTGCTGTAGAGATGTAGCTAGTGGCCTGTATCAA 1866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061942 GTTGCAGCTTTGCATAAATATTTGATCTGCTGTAGAGATGTAGCTAGTGGCCTGTATCAA 4062001
Query 1867 GTGAAAATATGGAAAAGCTGTGCTATTTGTTTCGTAACCCTTAGTTCATTTGTTCCGTTT 1926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4062002 GTGAAAATATGGAAAAGCTGTGCTATTTGTTTCGTAACCCTTAGTTCATTTGTTCCGTTT 4062061
Query 1927 ATTGAtttttttAGCATTTATATTCTTATCTTTCTTTGTTTGTAGAAAGCAGATGGAGAA 1986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4062062 ATTGATTTTTTTAGCATTTATATTCTTATCTTTCTTTGTTTGTAGAAAGCAGATGGAGAA 4062121
Query 1987 GAGTCTGCTTAATATTCACACGATAATTCAATGGATATGCTGACCAGATTGTAATGTCAA 2046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4062122 GAGTCTGCTTAATATTCACACGATAATTCAATGGATATGCTGACCAGATTGTAATGTCAA 4062181
Query 2047 TTGGAAACCATATGTTGTTTTCCTCCCAC 2075
|||||||||||||||||||||||||||||
Sbjct 4062182 TTGGAAACCATATGTTGTTTTCCTCCCAC 4062210
Score = 531 bits (276), Expect = 1e-150
Identities = 276/276 (100%), Gaps = 0/276 (0%)
Strand=Plus/Plus
Query 805 CAGGCTAAGTGCTTAGAGACTGGTGAAGCTGTTGCAATAAAGAAGGTTCTTCAGGACAAG 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059787 CAGGCTAAGTGCTTAGAGACTGGTGAAGCTGTTGCAATAAAGAAGGTTCTTCAGGACAAG 4059846
Query 865 AGGTACAAGAACCGGGAGCTGCAAACCATGCGTCTTCTGGACCACCCAAATGTTGTGTCC 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059847 AGGTACAAGAACCGGGAGCTGCAAACCATGCGTCTTCTGGACCACCCAAATGTTGTGTCC 4059906
Query 925 CTGAAGCACTGTTTCTTTTCAACAACTGAAAAGGATGAGCTATATCTTAACCTTGTTCTT 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059907 CTGAAGCACTGTTTCTTTTCAACAACTGAAAAGGATGAGCTATATCTTAACCTTGTTCTT 4059966
Query 985 GAGTATGTTCCGGAGACCGTTCACCGGGTGATCAAACATCACTATAAAATGAGCCAAAGG 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059967 GAGTATGTTCCGGAGACCGTTCACCGGGTGATCAAACATCACTATAAAATGAGCCAAAGG 4060026
Query 1045 ATGCCATTGATTTACGTCAAACTTTACTTTTACCAG 1080
||||||||||||||||||||||||||||||||||||
Sbjct 4060027 ATGCCATTGATTTACGTCAAACTTTACTTTTACCAG 4060062
Score = 310 bits (161), Expect = 5e-84
Identities = 161/161 (100%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 495 GGTGAGTTATTAATTAGTGAAGGTGAATTTGGAAGGGGGTGGAAGGTTTTGTTATTTCTT 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059171 GGTGAGTTATTAATTAGTGAAGGTGAATTTGGAAGGGGGTGGAAGGTTTTGTTATTTCTT 4059230
Query 555 TAGAATGGCTTCTGTTAGTGTAGTACCTGCTTCTGGAAATACAGTCGGTGTTGATAGGTT 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059231 TAGAATGGCTTCTGTTAGTGTAGTACCTGCTTCTGGAAATACAGTCGGTGTTGATAGGTT 4059290
Query 615 ACCCGAGGAGATGAATGACATGAAAATTAGGGATGACAAGG 655
|||||||||||||||||||||||||||||||||||||||||
Sbjct 4059291 ACCCGAGGAGATGAATGACATGAAAATTAGGGATGACAAGG 4059331
Score = 273 bits (142), Expect = 5e-73
Identities = 142/142 (100%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 1212 GGTAAAGGGGGAACCAAATATCTCTTACATATGTTCAAGATACTATCGAGCACCTGAACT 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060624 GGTAAAGGGGGAACCAAATATCTCTTACATATGTTCAAGATACTATCGAGCACCTGAACT 4060683
Query 1272 TATATTTGGTGCAACTGAGTACACCGCAGCAATTGATATCTGGTCTGCCGGCTGCGTTTT 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060684 TATATTTGGTGCAACTGAGTACACCGCAGCAATTGATATCTGGTCTGCCGGCTGCGTTTT 4060743
Query 1332 GGCTGAACTGCTACTGGGACAG 1353
||||||||||||||||||||||
Sbjct 4060744 GGCTGAACTGCTACTGGGACAG 4060765
Score = 198 bits (103), Expect = 2e-50
Identities = 103/103 (100%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1585 TTGGAAGCTTTGATTCATCCTTTCTTTGATGAACTACGTGATCCTAATACCCGACTCCCA 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061617 TTGGAAGCTTTGATTCATCCTTTCTTTGATGAACTACGTGATCCTAATACCCGACTCCCA 4061676
Query 1645 AATGGACGCTTTCTTCCACCATTGTTTAACTTTAAGCCTCATG 1687
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061677 AATGGACGCTTTCTTCCACCATTGTTTAACTTTAAGCCTCATG 4061719
Score = 189 bits (98), Expect = 1e-47
Identities = 98/98 (100%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 1403 AGGTTTTAGGTACTCCAACTAGGGAAGAAATAAAGTGCATGAATCCAAACTACACTGAGT 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061248 AGGTTTTAGGTACTCCAACTAGGGAAGAAATAAAGTGCATGAATCCAAACTACACTGAGT 4061307
Query 1463 TTAAATTTCCCCAAATCAAAGCTCACCCGTGGCACAAG 1500
||||||||||||||||||||||||||||||||||||||
Sbjct 4061308 TTAAATTTCCCCAAATCAAAGCTCACCCGTGGCACAAG 4061345
Score = 183 bits (95), Expect = 8e-46
Identities = 95/95 (100%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 653 AGGAAATGGAAGCAACTGTGGTTGATGGTAATGGGACGGAAGCGGGTCATATAATTGTCA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059420 AGGAAATGGAAGCAACTGTGGTTGATGGTAATGGGACGGAAGCGGGTCATATAATTGTCA 4059479
Query 713 CCACTATTGGGGGTAAAAATGGGCAGCCCAAACAG 747
|||||||||||||||||||||||||||||||||||
Sbjct 4059480 CCACTATTGGGGGTAAAAATGGGCAGCCCAAACAG 4059514
Score = 166 bits (86), Expect = 1e-40
Identities = 86/86 (100%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 1499 AGATATTCCAGAAGCGTATGCCCCCAGAAGCTGTAGATCTTGTCTCTAGACTACTGCAGT 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061415 AGATATTCCAGAAGCGTATGCCCCCAGAAGCTGTAGATCTTGTCTCTAGACTACTGCAGT 4061474
Query 1559 ACTCTCCCAATCTTCGGAGCACAGCA 1584
||||||||||||||||||||||||||
Sbjct 4061475 ACTCTCCCAATCTTCGGAGCACAGCA 4061500
Score = 162 bits (84), Expect = 2e-39
Identities = 152/186 (82%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 805 CAGGCTAAGTGCTTAGAGACTGGTGAAGCTGTTGCAATAAAGAAGGTTCTTCAGGACAAG 864
|||||||||||| | || || || || ||||||||||||||||||| || ||||| |||
Sbjct 1684180 CAGGCTAAGTGCCTTGAAACAGGGGACTCTGTTGCAATAAAGAAGGTGCTCCAGGATAAG 1684239
Query 865 AGGTACAAGAACCGGGAGCTGCAAACCATGCGTCTTCTGGACCACCCAAATGTTGTGTCC 924
|| |||||||| |||| || |||| |||||| | || |||| || |||||||| ||
Sbjct 1684240 AGATACAAGAATAGGGAACTCCAAATTATGCGTTTACTTAACCATCCTAATGTTGTTTCT 1684299
Query 925 CTGAAGCACTGTTTCTTTTCAACAACTGAAAAGGATGAGCTATATCTTAACCTTGTTCTT 984
||||| || |||||||||||||| ||||| || |||||||| |||||||||||||| |
Sbjct 1684300 CTGAAACATTGTTTCTTTTCAACTACTGAGAAAGATGAGCTTTATCTTAACCTTGTCTTG 1684359
Query 985 GAGTAT 990
||||||
Sbjct 1684360 GAGTAT 1684365
Score = 154 bits (80), Expect = 4e-37
Identities = 80/80 (100%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 1078 CAGATATGTAGAGCACTTGCTTACATCCATAACACTATTGGAGTTTGCCACAGGGACATA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060282 CAGATATGTAGAGCACTTGCTTACATCCATAACACTATTGGAGTTTGCCACAGGGACATA 4060341
Query 1138 AAGCCTCAAAATTTACTGGT 1157
||||||||||||||||||||
Sbjct 4060342 AAGCCTCAAAATTTACTGGT 4060361
Score = 121 bits (63), Expect = 3e-27
Identities = 63/63 (100%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 746 AGACAATAAGCTACATGGCTGAACGTGTTGTTGGCCATGGATCTTTTGGAGTAGTTTTCC 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059598 AGACAATAAGCTACATGGCTGAACGTGTTGTTGGCCATGGATCTTTTGGAGTAGTTTTCC 4059657
Query 806 AGG 808
|||
Sbjct 4059658 AGG 4059660
Score = 117 bits (61), Expect = 4e-26
Identities = 61/61 (100%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 1155 GGTCAATCCACATACCCACCAGCTGAAATTGTGTGACTTTGGAAGTGCAAAAGTTCTGGT 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060479 GGTCAATCCACATACCCACCAGCTGAAATTGTGTGACTTTGGAAGTGCAAAAGTTCTGGT 4060538
Query 1215 A 1215
|
Sbjct 4060539 A 4060539
Score = 114 bits (59), Expect = 5e-25
Identities = 59/59 (100%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 439 GGTGCACATTTTTTCCAGTGCGGTGTGAACTTCCATCCAGATTTTGAGAGTAACCTGGT 497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059018 GGTGCACATTTTTTCCAGTGCGGTGTGAACTTCCATCCAGATTTTGAGAGTAACCTGGT 4059076
Score = 108 bits (56), Expect = 3e-23
Identities = 56/56 (100%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1351 CAGCCTCTTTTCCCTGGCGAGAGCGGTGTAGACCAGCTTGTGGAAATCATCAAGGT 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060854 CAGCCTCTTTTCCCTGGCGAGAGCGGTGTAGACCAGCTTGTGGAAATCATCAAGGT 4060909
Score = 87.2 bits (45), Expect = 7e-17
Identities = 71/84 (85%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 1417 CCAACTAGGGAAGAAATAAAGTGCATGAATCCAAACTACACTGAGTTTAAATTTCCCCAA 1476
||||| || |||||||| ||||||||||||||||| ||||| || ||||| || || |||
Sbjct 1686050 CCAACAAGAGAAGAAATTAAGTGCATGAATCCAAATTACACAGAATTTAAGTTCCCTCAA 1686109
Query 1477 ATCAAAGCTCACCCGTGGCACAAG 1500
|| |||||||| || ||||| |||
Sbjct 1686110 ATTAAAGCTCATCCATGGCATAAG 1686133
Score = 64.1 bits (33), Expect = 6e-10
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 1222 GAACCAAATATCTCTTACATATGTTCAAGATACTATCGAGCACCTGAACTTATATTTGGT 1281
||||| || || || || || || |||||||| || | || || ||||||||||||||
Sbjct 1685333 GAACCCAACATATCGTATATCTGCTCAAGATATTACAGGGCCCCGGAACTTATATTTGGG 1685392
Query 1282 GCAACTGAGTACACCGCAGCAATTGATATCTGGTCTGCCGGCTGCGTTTTGGCTGAACTG 1341
|| || || ||||| | || |||||||| ||||| || || || |||||||| ||
Sbjct 1685393 GCTACAGAATACACAACTGCCATTGATATGTGGTCCATTGGATGTGTCTTGGCTGAGCTT 1685452
Query 1342 CTACTGGGACAG 1353
|| || ||||||
Sbjct 1685453 CTTCTTGGACAG 1685464
Score = 60.3 bits (31), Expect = 9e-09
Identities = 49/58 (84%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 1148 ATTTACTGGTCAATCCACATACCCACCAGCTGAAATTGTGTGACTTTGGAAGTGCAAA 1205
|||| | ||||||||| ||||| |||||| | || | ||||||||||||||||||||
Sbjct 1685160 ATTTGCAGGTCAATCCCCATACACACCAGTTAAAGATATGTGACTTTGGAAGTGCAAA 1685217
Score = 44.9 bits (23), Expect = 4e-04
Identities = 27/29 (93%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 1288 GAGTACACCGCAGCAATTGATATCTGGTC 1316
||||| || ||||||||||||||||||||
Sbjct 2213247 GAGTATACAGCAGCAATTGATATCTGGTC 2213219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.621 1.12
Effective search space used: 12180278865
Query= orange1.1g015662m PAC:18136220 (mRNA) Citrus sinensis
Length=2292
Score E
Sequences producing significant alignments: (Bits) Value
scaffold00001 length=5927163 1677 0.0
>scaffold00001 length=5927163
Length=5927163
Score = 1677 bits (872), Expect = 0.0
Identities = 872/872 (100%), Gaps = 0/872 (0%)
Strand=Plus/Plus
Query 1 GCAAGTAGGGAGACGGAGTGGAGACTGGAGAGGCGACTCGAAAATGATGAAAGGGGAGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058460 GCAAGTAGGGAGACGGAGTGGAGACTGGAGAGGCGACTCGAAAATGATGAAAGGGGAGGA 4058519
Query 61 GGTGGGGGCCCAGGGGAGGTTTGAACGGTCAAAAAGAAGAAACAAAATGAAGGACATAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058520 GGTGGGGGCCCAGGGGAGGTTTGAACGGTCAAAAAGAAGAAACAAAATGAAGGACATAAA 4058579
Query 121 CAAATAAAATAGAATGGTGTTGGGCTCCGTGTGTCTGCCGTTGTTGACTCACTCACCGCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058580 CAAATAAAATAGAATGGTGTTGGGCTCCGTGTGTCTGCCGTTGTTGACTCACTCACCGCC 4058639
Query 181 TGTGTcaccaccaccaccaccaATAGCATTGCCATTTTCCACTTGCCACCATTCGCTCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058640 TGTGTCACCACCACCACCACCAATAGCATTGCCATTTTCCACTTGCCACCATTCGCTCAA 4058699
Query 241 TCAGTCAAAAGAACAGACCAAACCAAACAAAAAActcctctcccttctctctctctctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058700 TCAGTCAAAAGAACAGACCAAACCAAACAAAAAACTCCTCTCCCTTCTCTCTCTCTCTCT 4058759
Query 301 ctctctctTTATCACTTCACAGCATTTCCCCTATCACAGTATACAGATCCATTTATCTGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058760 CTCTCTCTTTATCACTTCACAGCATTTCCCCTATCACAGTATACAGATCCATTTATCTGA 4058819
Query 361 AAGCCGAACAATTTACCtttttaattttttctttttAGTTATTGCGCTTATGGATCTACC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058820 AAGCCGAACAATTTACCTTTTTAATTTTTTCTTTTTAGTTATTGCGCTTATGGATCTACC 4058879
Query 421 CAattttttcacccgatcggtaattttcacattgtttctattacttttattttcttttcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058880 CAATTTTTTCACCCGATCGGTAATTTTCACATTGTTTCTATTACTTTTATTTTCTTTTCC 4058939
Query 481 attttattattattattattatgtgcatttttaGATCTTTGCGGGTAAATAGATTGAAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058940 ATTTTATTATTATTATTATTATGTGCATTTTTAGATCTTTGCGGGTAAATAGATTGAAAC 4058999
Query 541 TGTTAGCTTTGTAAAGTAGGTGCACATTTTTTCCAGTGCGGTGTGAACTTCCATCCAGAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059000 TGTTAGCTTTGTAAAGTAGGTGCACATTTTTTCCAGTGCGGTGTGAACTTCCATCCAGAT 4059059
Query 601 TTTGAGAGTAACCTGGTTTGATGTGAATGTGGATACCATTTACTATTTACTGAATTTTCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059060 TTTGAGAGTAACCTGGTTTGATGTGAATGTGGATACCATTTACTATTTACTGAATTTTCT 4059119
Query 661 GATGTGTCTTGTATTGATTTGCTTAAACCGCTGATTGTTACTGCTTCTGCAGGTGAGTTA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059120 GATGTGTCTTGTATTGATTTGCTTAAACCGCTGATTGTTACTGCTTCTGCAGGTGAGTTA 4059179
Query 721 TTAATTAGTGAAGGTGAATTTGGAAGGGGGTGGAAGGTTTTGTTATTTCTTTAGAATGGC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059180 TTAATTAGTGAAGGTGAATTTGGAAGGGGGTGGAAGGTTTTGTTATTTCTTTAGAATGGC 4059239
Query 781 TTCTGTTAGTGTAGTACCTGCTTCTGGAAATACAGTCGGTGTTGATAGGTTACCCGAGGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059240 TTCTGTTAGTGTAGTACCTGCTTCTGGAAATACAGTCGGTGTTGATAGGTTACCCGAGGA 4059299
Query 841 GATGAATGACATGAAAATTAGGGATGACAAGG 872
||||||||||||||||||||||||||||||||
Sbjct 4059300 GATGAATGACATGAAAATTAGGGATGACAAGG 4059331
Score = 748 bits (389), Expect = 0.0
Identities = 389/389 (100%), Gaps = 0/389 (0%)
Strand=Plus/Plus
Query 1904 GAACTGAAGGGTGTGCCCGTGGATATGTTGGTGAAGCTGATCCCTGAGCATGCAAGAAAA 1963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061822 GAACTGAAGGGTGTGCCCGTGGATATGTTGGTGAAGCTGATCCCTGAGCATGCAAGAAAA 4061881
Query 1964 CAGTGTGCCTTCCTTGGTTTGTGATTTGGTTCTCCAAAAGTTGAAGCCTGCTCCTTGCAG 2023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061882 CAGTGTGCCTTCCTTGGTTTGTGATTTGGTTCTCCAAAAGTTGAAGCCTGCTCCTTGCAG 4061941
Query 2024 GTTGCAGCTTTGCATAAATATTTGATCTGCTGTAGAGATGTAGCTAGTGGCCTGTATCAA 2083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061942 GTTGCAGCTTTGCATAAATATTTGATCTGCTGTAGAGATGTAGCTAGTGGCCTGTATCAA 4062001
Query 2084 GTGAAAATATGGAAAAGCTGTGCTATTTGTTTCGTAACCCTTAGTTCATTTGTTCCGTTT 2143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4062002 GTGAAAATATGGAAAAGCTGTGCTATTTGTTTCGTAACCCTTAGTTCATTTGTTCCGTTT 4062061
Query 2144 ATTGAtttttttAGCATTTATATTCTTATCTTTCTTTGTTTGTAGAAAGCAGATGGAGAA 2203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4062062 ATTGATTTTTTTAGCATTTATATTCTTATCTTTCTTTGTTTGTAGAAAGCAGATGGAGAA 4062121
Query 2204 GAGTCTGCTTAATATTCACACGATAATTCAATGGATATGCTGACCAGATTGTAATGTCAA 2263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4062122 GAGTCTGCTTAATATTCACACGATAATTCAATGGATATGCTGACCAGATTGTAATGTCAA 4062181
Query 2264 TTGGAAACCATATGTTGTTTTCCTCCCAC 2292
|||||||||||||||||||||||||||||
Sbjct 4062182 TTGGAAACCATATGTTGTTTTCCTCCCAC 4062210
Score = 531 bits (276), Expect = 2e-150
Identities = 276/276 (100%), Gaps = 0/276 (0%)
Strand=Plus/Plus
Query 1022 CAGGCTAAGTGCTTAGAGACTGGTGAAGCTGTTGCAATAAAGAAGGTTCTTCAGGACAAG 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059787 CAGGCTAAGTGCTTAGAGACTGGTGAAGCTGTTGCAATAAAGAAGGTTCTTCAGGACAAG 4059846
Query 1082 AGGTACAAGAACCGGGAGCTGCAAACCATGCGTCTTCTGGACCACCCAAATGTTGTGTCC 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059847 AGGTACAAGAACCGGGAGCTGCAAACCATGCGTCTTCTGGACCACCCAAATGTTGTGTCC 4059906
Query 1142 CTGAAGCACTGTTTCTTTTCAACAACTGAAAAGGATGAGCTATATCTTAACCTTGTTCTT 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059907 CTGAAGCACTGTTTCTTTTCAACAACTGAAAAGGATGAGCTATATCTTAACCTTGTTCTT 4059966
Query 1202 GAGTATGTTCCGGAGACCGTTCACCGGGTGATCAAACATCACTATAAAATGAGCCAAAGG 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059967 GAGTATGTTCCGGAGACCGTTCACCGGGTGATCAAACATCACTATAAAATGAGCCAAAGG 4060026
Query 1262 ATGCCATTGATTTACGTCAAACTTTACTTTTACCAG 1297
||||||||||||||||||||||||||||||||||||
Sbjct 4060027 ATGCCATTGATTTACGTCAAACTTTACTTTTACCAG 4060062
Score = 273 bits (142), Expect = 5e-73
Identities = 142/142 (100%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 1429 GGTAAAGGGGGAACCAAATATCTCTTACATATGTTCAAGATACTATCGAGCACCTGAACT 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060624 GGTAAAGGGGGAACCAAATATCTCTTACATATGTTCAAGATACTATCGAGCACCTGAACT 4060683
Query 1489 TATATTTGGTGCAACTGAGTACACCGCAGCAATTGATATCTGGTCTGCCGGCTGCGTTTT 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060684 TATATTTGGTGCAACTGAGTACACCGCAGCAATTGATATCTGGTCTGCCGGCTGCGTTTT 4060743
Query 1549 GGCTGAACTGCTACTGGGACAG 1570
||||||||||||||||||||||
Sbjct 4060744 GGCTGAACTGCTACTGGGACAG 4060765
Score = 198 bits (103), Expect = 2e-50
Identities = 103/103 (100%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1802 TTGGAAGCTTTGATTCATCCTTTCTTTGATGAACTACGTGATCCTAATACCCGACTCCCA 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061617 TTGGAAGCTTTGATTCATCCTTTCTTTGATGAACTACGTGATCCTAATACCCGACTCCCA 4061676
Query 1862 AATGGACGCTTTCTTCCACCATTGTTTAACTTTAAGCCTCATG 1904
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061677 AATGGACGCTTTCTTCCACCATTGTTTAACTTTAAGCCTCATG 4061719
Score = 189 bits (98), Expect = 2e-47
Identities = 98/98 (100%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 1620 AGGTTTTAGGTACTCCAACTAGGGAAGAAATAAAGTGCATGAATCCAAACTACACTGAGT 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061248 AGGTTTTAGGTACTCCAACTAGGGAAGAAATAAAGTGCATGAATCCAAACTACACTGAGT 4061307
Query 1680 TTAAATTTCCCCAAATCAAAGCTCACCCGTGGCACAAG 1717
||||||||||||||||||||||||||||||||||||||
Sbjct 4061308 TTAAATTTCCCCAAATCAAAGCTCACCCGTGGCACAAG 4061345
Score = 183 bits (95), Expect = 9e-46
Identities = 95/95 (100%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 870 AGGAAATGGAAGCAACTGTGGTTGATGGTAATGGGACGGAAGCGGGTCATATAATTGTCA 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059420 AGGAAATGGAAGCAACTGTGGTTGATGGTAATGGGACGGAAGCGGGTCATATAATTGTCA 4059479
Query 930 CCACTATTGGGGGTAAAAATGGGCAGCCCAAACAG 964
|||||||||||||||||||||||||||||||||||
Sbjct 4059480 CCACTATTGGGGGTAAAAATGGGCAGCCCAAACAG 4059514
Score = 166 bits (86), Expect = 1e-40
Identities = 86/86 (100%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 1716 AGATATTCCAGAAGCGTATGCCCCCAGAAGCTGTAGATCTTGTCTCTAGACTACTGCAGT 1775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061415 AGATATTCCAGAAGCGTATGCCCCCAGAAGCTGTAGATCTTGTCTCTAGACTACTGCAGT 4061474
Query 1776 ACTCTCCCAATCTTCGGAGCACAGCA 1801
||||||||||||||||||||||||||
Sbjct 4061475 ACTCTCCCAATCTTCGGAGCACAGCA 4061500
Score = 162 bits (84), Expect = 2e-39
Identities = 152/186 (82%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 1022 CAGGCTAAGTGCTTAGAGACTGGTGAAGCTGTTGCAATAAAGAAGGTTCTTCAGGACAAG 1081
|||||||||||| | || || || || ||||||||||||||||||| || ||||| |||
Sbjct 1684180 CAGGCTAAGTGCCTTGAAACAGGGGACTCTGTTGCAATAAAGAAGGTGCTCCAGGATAAG 1684239
Query 1082 AGGTACAAGAACCGGGAGCTGCAAACCATGCGTCTTCTGGACCACCCAAATGTTGTGTCC 1141
|| |||||||| |||| || |||| |||||| | || |||| || |||||||| ||
Sbjct 1684240 AGATACAAGAATAGGGAACTCCAAATTATGCGTTTACTTAACCATCCTAATGTTGTTTCT 1684299
Query 1142 CTGAAGCACTGTTTCTTTTCAACAACTGAAAAGGATGAGCTATATCTTAACCTTGTTCTT 1201
||||| || |||||||||||||| ||||| || |||||||| |||||||||||||| |
Sbjct 1684300 CTGAAACATTGTTTCTTTTCAACTACTGAGAAAGATGAGCTTTATCTTAACCTTGTCTTG 1684359
Query 1202 GAGTAT 1207
||||||
Sbjct 1684360 GAGTAT 1684365
Score = 154 bits (80), Expect = 4e-37
Identities = 80/80 (100%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 1295 CAGATATGTAGAGCACTTGCTTACATCCATAACACTATTGGAGTTTGCCACAGGGACATA 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060282 CAGATATGTAGAGCACTTGCTTACATCCATAACACTATTGGAGTTTGCCACAGGGACATA 4060341
Query 1355 AAGCCTCAAAATTTACTGGT 1374
||||||||||||||||||||
Sbjct 4060342 AAGCCTCAAAATTTACTGGT 4060361
Score = 121 bits (63), Expect = 3e-27
Identities = 63/63 (100%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 963 AGACAATAAGCTACATGGCTGAACGTGTTGTTGGCCATGGATCTTTTGGAGTAGTTTTCC 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059598 AGACAATAAGCTACATGGCTGAACGTGTTGTTGGCCATGGATCTTTTGGAGTAGTTTTCC 4059657
Query 1023 AGG 1025
|||
Sbjct 4059658 AGG 4059660
Score = 117 bits (61), Expect = 4e-26
Identities = 61/61 (100%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 1372 GGTCAATCCACATACCCACCAGCTGAAATTGTGTGACTTTGGAAGTGCAAAAGTTCTGGT 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060479 GGTCAATCCACATACCCACCAGCTGAAATTGTGTGACTTTGGAAGTGCAAAAGTTCTGGT 4060538
Query 1432 A 1432
|
Sbjct 4060539 A 4060539
Score = 108 bits (56), Expect = 3e-23
Identities = 56/56 (100%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1568 CAGCCTCTTTTCCCTGGCGAGAGCGGTGTAGACCAGCTTGTGGAAATCATCAAGGT 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060854 CAGCCTCTTTTCCCTGGCGAGAGCGGTGTAGACCAGCTTGTGGAAATCATCAAGGT 4060909
Score = 87.2 bits (45), Expect = 8e-17
Identities = 71/84 (85%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 1634 CCAACTAGGGAAGAAATAAAGTGCATGAATCCAAACTACACTGAGTTTAAATTTCCCCAA 1693
||||| || |||||||| ||||||||||||||||| ||||| || ||||| || || |||
Sbjct 1686050 CCAACAAGAGAAGAAATTAAGTGCATGAATCCAAATTACACAGAATTTAAGTTCCCTCAA 1686109
Query 1694 ATCAAAGCTCACCCGTGGCACAAG 1717
|| |||||||| || ||||| |||
Sbjct 1686110 ATTAAAGCTCATCCATGGCATAAG 1686133
Score = 64.1 bits (33), Expect = 7e-10
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 1439 GAACCAAATATCTCTTACATATGTTCAAGATACTATCGAGCACCTGAACTTATATTTGGT 1498
||||| || || || || || || |||||||| || | || || ||||||||||||||
Sbjct 1685333 GAACCCAACATATCGTATATCTGCTCAAGATATTACAGGGCCCCGGAACTTATATTTGGG 1685392
Query 1499 GCAACTGAGTACACCGCAGCAATTGATATCTGGTCTGCCGGCTGCGTTTTGGCTGAACTG 1558
|| || || ||||| | || |||||||| ||||| || || || |||||||| ||
Sbjct 1685393 GCTACAGAATACACAACTGCCATTGATATGTGGTCCATTGGATGTGTCTTGGCTGAGCTT 1685452
Query 1559 CTACTGGGACAG 1570
|| || ||||||
Sbjct 1685453 CTTCTTGGACAG 1685464
Score = 60.3 bits (31), Expect = 1e-08
Identities = 49/58 (84%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 1365 ATTTACTGGTCAATCCACATACCCACCAGCTGAAATTGTGTGACTTTGGAAGTGCAAA 1422
|||| | ||||||||| ||||| |||||| | || | ||||||||||||||||||||
Sbjct 1685160 ATTTGCAGGTCAATCCCCATACACACCAGTTAAAGATATGTGACTTTGGAAGTGCAAA 1685217
Score = 44.9 bits (23), Expect = 4e-04
Identities = 27/29 (93%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 1505 GAGTACACCGCAGCAATTGATATCTGGTC 1533
||||| || ||||||||||||||||||||
Sbjct 2213247 GAGTATACAGCAGCAATTGATATCTGGTC 2213219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.621 1.12
Effective search space used: 12180278865
Query= orange1.1g018514m PAC:18136222 (mRNA) Citrus sinensis
Length=2029
Score E
Sequences producing significant alignments: (Bits) Value
scaffold00001 length=5927163 848 0.0
>scaffold00001 length=5927163
Length=5927163
Score = 848 bits (441), Expect = 0.0
Identities = 441/441 (100%), Gaps = 0/441 (0%)
Strand=Plus/Plus
Query 1 GCAAGTAGGGAGACGGAGTGGAGACTGGAGAGGCGACTCGAAAATGATGAAAGGGGAGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058460 GCAAGTAGGGAGACGGAGTGGAGACTGGAGAGGCGACTCGAAAATGATGAAAGGGGAGGA 4058519
Query 61 GGTGGGGGCCCAGGGGAGGTTTGAACGGTCAAAAAGAAGAAACAAAATGAAGGACATAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058520 GGTGGGGGCCCAGGGGAGGTTTGAACGGTCAAAAAGAAGAAACAAAATGAAGGACATAAA 4058579
Query 121 CAAATAAAATAGAATGGTGTTGGGCTCCGTGTGTCTGCCGTTGTTGACTCACTCACCGCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058580 CAAATAAAATAGAATGGTGTTGGGCTCCGTGTGTCTGCCGTTGTTGACTCACTCACCGCC 4058639
Query 181 TGTGTcaccaccaccaccaccaATAGCATTGCCATTTTCCACTTGCCACCATTCGCTCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058640 TGTGTCACCACCACCACCACCAATAGCATTGCCATTTTCCACTTGCCACCATTCGCTCAA 4058699
Query 241 TCAGTCAAAAGAACAGACCAAACCAAACAAAAAActcctctcccttctctctctctctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058700 TCAGTCAAAAGAACAGACCAAACCAAACAAAAAACTCCTCTCCCTTCTCTCTCTCTCTCT 4058759
Query 301 ctctctctTTATCACTTCACAGCATTTCCCCTATCACAGTATACAGATCCATTTATCTGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058760 CTCTCTCTTTATCACTTCACAGCATTTCCCCTATCACAGTATACAGATCCATTTATCTGA 4058819
Query 361 AAGCCGAACAATTTACCtttttaattttttctttttAGTTATTGCGCTTATGGATCTACC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4058820 AAGCCGAACAATTTACCTTTTTAATTTTTTCTTTTTAGTTATTGCGCTTATGGATCTACC 4058879
Query 421 CAATTTTTTCACCCGATCGGT 441
|||||||||||||||||||||
Sbjct 4058880 CAATTTTTTCACCCGATCGGT 4058900
Score = 748 bits (389), Expect = 0.0
Identities = 389/389 (100%), Gaps = 0/389 (0%)
Strand=Plus/Plus
Query 1641 GAACTGAAGGGTGTGCCCGTGGATATGTTGGTGAAGCTGATCCCTGAGCATGCAAGAAAA 1700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061822 GAACTGAAGGGTGTGCCCGTGGATATGTTGGTGAAGCTGATCCCTGAGCATGCAAGAAAA 4061881
Query 1701 CAGTGTGCCTTCCTTGGTTTGTGATTTGGTTCTCCAAAAGTTGAAGCCTGCTCCTTGCAG 1760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061882 CAGTGTGCCTTCCTTGGTTTGTGATTTGGTTCTCCAAAAGTTGAAGCCTGCTCCTTGCAG 4061941
Query 1761 GTTGCAGCTTTGCATAAATATTTGATCTGCTGTAGAGATGTAGCTAGTGGCCTGTATCAA 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061942 GTTGCAGCTTTGCATAAATATTTGATCTGCTGTAGAGATGTAGCTAGTGGCCTGTATCAA 4062001
Query 1821 GTGAAAATATGGAAAAGCTGTGCTATTTGTTTCGTAACCCTTAGTTCATTTGTTCCGTTT 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4062002 GTGAAAATATGGAAAAGCTGTGCTATTTGTTTCGTAACCCTTAGTTCATTTGTTCCGTTT 4062061
Query 1881 ATTGAtttttttAGCATTTATATTCTTATCTTTCTTTGTTTGTAGAAAGCAGATGGAGAA 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4062062 ATTGATTTTTTTAGCATTTATATTCTTATCTTTCTTTGTTTGTAGAAAGCAGATGGAGAA 4062121
Query 1941 GAGTCTGCTTAATATTCACACGATAATTCAATGGATATGCTGACCAGATTGTAATGTCAA 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4062122 GAGTCTGCTTAATATTCACACGATAATTCAATGGATATGCTGACCAGATTGTAATGTCAA 4062181
Query 2001 TTGGAAACCATATGTTGTTTTCCTCCCAC 2029
|||||||||||||||||||||||||||||
Sbjct 4062182 TTGGAAACCATATGTTGTTTTCCTCCCAC 4062210
Score = 531 bits (276), Expect = 1e-150
Identities = 276/276 (100%), Gaps = 0/276 (0%)
Strand=Plus/Plus
Query 749 CAGGCTAAGTGCTTAGAGACTGGTGAAGCTGTTGCAATAAAGAAGGTTCTTCAGGACAAG 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059787 CAGGCTAAGTGCTTAGAGACTGGTGAAGCTGTTGCAATAAAGAAGGTTCTTCAGGACAAG 4059846
Query 809 AGGTACAAGAACCGGGAGCTGCAAACCATGCGTCTTCTGGACCACCCAAATGTTGTGTCC 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059847 AGGTACAAGAACCGGGAGCTGCAAACCATGCGTCTTCTGGACCACCCAAATGTTGTGTCC 4059906
Query 869 CTGAAGCACTGTTTCTTTTCAACAACTGAAAAGGATGAGCTATATCTTAACCTTGTTCTT 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059907 CTGAAGCACTGTTTCTTTTCAACAACTGAAAAGGATGAGCTATATCTTAACCTTGTTCTT 4059966
Query 929 GAGTATGTTCCGGAGACCGTTCACCGGGTGATCAAACATCACTATAAAATGAGCCAAAGG 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059967 GAGTATGTTCCGGAGACCGTTCACCGGGTGATCAAACATCACTATAAAATGAGCCAAAGG 4060026
Query 989 ATGCCATTGATTTACGTCAAACTTTACTTTTACCAG 1024
||||||||||||||||||||||||||||||||||||
Sbjct 4060027 ATGCCATTGATTTACGTCAAACTTTACTTTTACCAG 4060062
Score = 310 bits (161), Expect = 5e-84
Identities = 161/161 (100%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 439 GGTGAGTTATTAATTAGTGAAGGTGAATTTGGAAGGGGGTGGAAGGTTTTGTTATTTCTT 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059171 GGTGAGTTATTAATTAGTGAAGGTGAATTTGGAAGGGGGTGGAAGGTTTTGTTATTTCTT 4059230
Query 499 TAGAATGGCTTCTGTTAGTGTAGTACCTGCTTCTGGAAATACAGTCGGTGTTGATAGGTT 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059231 TAGAATGGCTTCTGTTAGTGTAGTACCTGCTTCTGGAAATACAGTCGGTGTTGATAGGTT 4059290
Query 559 ACCCGAGGAGATGAATGACATGAAAATTAGGGATGACAAGG 599
|||||||||||||||||||||||||||||||||||||||||
Sbjct 4059291 ACCCGAGGAGATGAATGACATGAAAATTAGGGATGACAAGG 4059331
Score = 273 bits (142), Expect = 5e-73
Identities = 142/142 (100%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 1156 GGTAAAGGGGGAACCAAATATCTCTTACATATGTTCAAGATACTATCGAGCACCTGAACT 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060624 GGTAAAGGGGGAACCAAATATCTCTTACATATGTTCAAGATACTATCGAGCACCTGAACT 4060683
Query 1216 TATATTTGGTGCAACTGAGTACACCGCAGCAATTGATATCTGGTCTGCCGGCTGCGTTTT 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060684 TATATTTGGTGCAACTGAGTACACCGCAGCAATTGATATCTGGTCTGCCGGCTGCGTTTT 4060743
Query 1276 GGCTGAACTGCTACTGGGACAG 1297
||||||||||||||||||||||
Sbjct 4060744 GGCTGAACTGCTACTGGGACAG 4060765
Score = 217 bits (113), Expect = 3e-56
Identities = 113/113 (100%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 1529 TTTGATGCAGTTGGAAGCTTTGATTCATCCTTTCTTTGATGAACTACGTGATCCTAATAC 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061607 TTTGATGCAGTTGGAAGCTTTGATTCATCCTTTCTTTGATGAACTACGTGATCCTAATAC 4061666
Query 1589 CCGACTCCCAAATGGACGCTTTCTTCCACCATTGTTTAACTTTAAGCCTCATG 1641
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061667 CCGACTCCCAAATGGACGCTTTCTTCCACCATTGTTTAACTTTAAGCCTCATG 4061719
Score = 189 bits (98), Expect = 1e-47
Identities = 98/98 (100%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 1347 AGGTTTTAGGTACTCCAACTAGGGAAGAAATAAAGTGCATGAATCCAAACTACACTGAGT 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061248 AGGTTTTAGGTACTCCAACTAGGGAAGAAATAAAGTGCATGAATCCAAACTACACTGAGT 4061307
Query 1407 TTAAATTTCCCCAAATCAAAGCTCACCCGTGGCACAAG 1444
||||||||||||||||||||||||||||||||||||||
Sbjct 4061308 TTAAATTTCCCCAAATCAAAGCTCACCCGTGGCACAAG 4061345
Score = 183 bits (95), Expect = 8e-46
Identities = 95/95 (100%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 597 AGGAAATGGAAGCAACTGTGGTTGATGGTAATGGGACGGAAGCGGGTCATATAATTGTCA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059420 AGGAAATGGAAGCAACTGTGGTTGATGGTAATGGGACGGAAGCGGGTCATATAATTGTCA 4059479
Query 657 CCACTATTGGGGGTAAAAATGGGCAGCCCAAACAG 691
|||||||||||||||||||||||||||||||||||
Sbjct 4059480 CCACTATTGGGGGTAAAAATGGGCAGCCCAAACAG 4059514
Score = 166 bits (86), Expect = 1e-40
Identities = 86/86 (100%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 1443 AGATATTCCAGAAGCGTATGCCCCCAGAAGCTGTAGATCTTGTCTCTAGACTACTGCAGT 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4061415 AGATATTCCAGAAGCGTATGCCCCCAGAAGCTGTAGATCTTGTCTCTAGACTACTGCAGT 4061474
Query 1503 ACTCTCCCAATCTTCGGAGCACAGCA 1528
||||||||||||||||||||||||||
Sbjct 4061475 ACTCTCCCAATCTTCGGAGCACAGCA 4061500
Score = 162 bits (84), Expect = 2e-39
Identities = 152/186 (82%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 749 CAGGCTAAGTGCTTAGAGACTGGTGAAGCTGTTGCAATAAAGAAGGTTCTTCAGGACAAG 808
|||||||||||| | || || || || ||||||||||||||||||| || ||||| |||
Sbjct 1684180 CAGGCTAAGTGCCTTGAAACAGGGGACTCTGTTGCAATAAAGAAGGTGCTCCAGGATAAG 1684239
Query 809 AGGTACAAGAACCGGGAGCTGCAAACCATGCGTCTTCTGGACCACCCAAATGTTGTGTCC 868
|| |||||||| |||| || |||| |||||| | || |||| || |||||||| ||
Sbjct 1684240 AGATACAAGAATAGGGAACTCCAAATTATGCGTTTACTTAACCATCCTAATGTTGTTTCT 1684299
Query 869 CTGAAGCACTGTTTCTTTTCAACAACTGAAAAGGATGAGCTATATCTTAACCTTGTTCTT 928
||||| || |||||||||||||| ||||| || |||||||| |||||||||||||| |
Sbjct 1684300 CTGAAACATTGTTTCTTTTCAACTACTGAGAAAGATGAGCTTTATCTTAACCTTGTCTTG 1684359
Query 929 GAGTAT 934
||||||
Sbjct 1684360 GAGTAT 1684365
Score = 154 bits (80), Expect = 4e-37
Identities = 80/80 (100%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 1022 CAGATATGTAGAGCACTTGCTTACATCCATAACACTATTGGAGTTTGCCACAGGGACATA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060282 CAGATATGTAGAGCACTTGCTTACATCCATAACACTATTGGAGTTTGCCACAGGGACATA 4060341
Query 1082 AAGCCTCAAAATTTACTGGT 1101
||||||||||||||||||||
Sbjct 4060342 AAGCCTCAAAATTTACTGGT 4060361
Score = 121 bits (63), Expect = 3e-27
Identities = 63/63 (100%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 690 AGACAATAAGCTACATGGCTGAACGTGTTGTTGGCCATGGATCTTTTGGAGTAGTTTTCC 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4059598 AGACAATAAGCTACATGGCTGAACGTGTTGTTGGCCATGGATCTTTTGGAGTAGTTTTCC 4059657
Query 750 AGG 752
|||
Sbjct 4059658 AGG 4059660
Score = 117 bits (61), Expect = 4e-26
Identities = 61/61 (100%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 1099 GGTCAATCCACATACCCACCAGCTGAAATTGTGTGACTTTGGAAGTGCAAAAGTTCTGGT 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060479 GGTCAATCCACATACCCACCAGCTGAAATTGTGTGACTTTGGAAGTGCAAAAGTTCTGGT 4060538
Query 1159 A 1159
|
Sbjct 4060539 A 4060539
Score = 108 bits (56), Expect = 3e-23
Identities = 56/56 (100%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1295 CAGCCTCTTTTCCCTGGCGAGAGCGGTGTAGACCAGCTTGTGGAAATCATCAAGGT 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060854 CAGCCTCTTTTCCCTGGCGAGAGCGGTGTAGACCAGCTTGTGGAAATCATCAAGGT 4060909
Score = 87.2 bits (45), Expect = 7e-17
Identities = 71/84 (85%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 1361 CCAACTAGGGAAGAAATAAAGTGCATGAATCCAAACTACACTGAGTTTAAATTTCCCCAA 1420
||||| || |||||||| ||||||||||||||||| ||||| || ||||| || || |||
Sbjct 1686050 CCAACAAGAGAAGAAATTAAGTGCATGAATCCAAATTACACAGAATTTAAGTTCCCTCAA 1686109
Query 1421 ATCAAAGCTCACCCGTGGCACAAG 1444
|| |||||||| || ||||| |||
Sbjct 1686110 ATTAAAGCTCATCCATGGCATAAG 1686133
Score = 64.1 bits (33), Expect = 6e-10
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 1166 GAACCAAATATCTCTTACATATGTTCAAGATACTATCGAGCACCTGAACTTATATTTGGT 1225
||||| || || || || || || |||||||| || | || || ||||||||||||||
Sbjct 1685333 GAACCCAACATATCGTATATCTGCTCAAGATATTACAGGGCCCCGGAACTTATATTTGGG 1685392
Query 1226 GCAACTGAGTACACCGCAGCAATTGATATCTGGTCTGCCGGCTGCGTTTTGGCTGAACTG 1285
|| || || ||||| | || |||||||| ||||| || || || |||||||| ||
Sbjct 1685393 GCTACAGAATACACAACTGCCATTGATATGTGGTCCATTGGATGTGTCTTGGCTGAGCTT 1685452
Query 1286 CTACTGGGACAG 1297
|| || ||||||
Sbjct 1685453 CTTCTTGGACAG 1685464
Score = 60.3 bits (31), Expect = 8e-09
Identities = 49/58 (84%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 1092 ATTTACTGGTCAATCCACATACCCACCAGCTGAAATTGTGTGACTTTGGAAGTGCAAA 1149
|||| | ||||||||| ||||| |||||| | || | ||||||||||||||||||||
Sbjct 1685160 ATTTGCAGGTCAATCCCCATACACACCAGTTAAAGATATGTGACTTTGGAAGTGCAAA 1685217
Score = 44.9 bits (23), Expect = 4e-04
Identities = 27/29 (93%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 1232 GAGTACACCGCAGCAATTGATATCTGGTC 1260
||||| || ||||||||||||||||||||
Sbjct 2213247 GAGTATACAGCAGCAATTGATATCTGGTC 2213219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.621 1.12
Effective search space used: 12180278865
Database: Citrus_sinensis-scaffold00001.fasta
Posted date: Jun 10, 2018 8:23 PM
Number of letters in database: 5,927,163
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 5, Extension: 2