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tripal_blast
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config
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install
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tripal_blast.settings.yml

tripal_blast.settings.yml 2.6 KB
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  1. # @file
    2. 

  2. # Tripal Blast module variables/configuration.
    3. 

  3. 

  4. # GENERAL CONFIGURATIONS:
    5. 

  5. tripal_blast_config_general:
    6. 

  6.   path:
    7. 

  7.   threads: 1
    8. 

  8.   eval: 0.001
    9. 

  9.   qrange: 0
    10. 

  10. 

  11. # UPLOAD CONFIGURATIONS:
    12. 

  12. tripal_blast_config_upload:
    13. 

  13.   allow_query: TRUE
    14. 

  14.   allow_target: FALSE
    15. 

  15. 

  16. # SEQUENCE CONFIGURATIONS:
    17. 

  17. tripal_blast_config_sequence:
    18. 

  18.   nucleotide: > 
    19. 

  19.     >partial lipoxygenase Glyma15g03040
    20. 

  20.     TTTCGTATGA GATTAAAATG TGTGAAATTT TGTTTGATAG GACATGGGAA
    21. 

  21.     AGGAAAAGTT GGAAAGGCTA CAAATTTAAG AGGACAAGTG TCGTTACCAA
    22. 

  22.     CCTTGGGAGC TGGCGAAGAT GCATACGATG TTCATTTTGA ATGGGACAGT
    23. 

  23.     GACTTCGGAA TTCCCGGTGC ATTTTACATT AAGAACTTCA TGCAAGTTGA
    24. 

  24.     GTTCTATCTC AAGTCTCTAA CTCTCGAAGA CATTCCAAAC CACGGAACCA
    25. 

  25.     TTCACTTCGT ATGCAACTCC TGGGTTTACA ACTCAAAATC CTACCATTCT
    26. 

  26.     GATCGCATTT TCTTTGCCAA CAATGTAAGC TACTTAAATA CTGTTATACA
    27. 

  27.     TTGTCTAACA TCTTGTTAGA GTCTTGCATG ATGTGTACCG TTTATTGTTG
    28. 

  28.     TTGTTGAACT TTACCACATG GCATGGATGC AAAAGTTGTT ATACACATAA
    29. 

  29.     ATTATAATGC AGACATATCT TCCAAGCGAG ACACCGGCTC CACTTGTCAA
    30. 

  30.     GTACAGAGAA GAAGAATTGA AGAATGTAAG AGGGGATGGA ACTGGTGAGC
    31. 

  31.     GCAAGGAATG GGATAGGATC TATGATTATG ATGTCTACAA TGACTTGGGC
    32. 

  32.     GATCCAGATA AGGGTGAAAA GTATGCACGC CCCGTTCTTG GAGGTTCTGC
    33. 

  33.     CTTACCTTAC CCTCGCAGAG GAAGAACCGG AAGAGGAAAA ACTAGAAAAG
    34. 

  34.     GTTTCTCACT AGTCACTAAT TTATTACTTT TTAATGTTTG TTTTTAGGCA
    35. 

  35.     TCTTTTCTGA TGAAATGTAT ACTTTTGATG TTTTTTTGTT TTAGCATAAC
    36. 

  36.     TGAATTAGTA AAGTGTGTTG TGTTCCTTAG AAGTTAGAAA AGTACTAAGT
    37. 

  37.     ATAAGGTCTT TGAGTTGTCG TCTTTATCTT AACAGATCCC AACAGTGAGA
    38. 

  38.     AGCCCAGTGA TTTTGTTTAC CTTCCGAGAG ATGAAGCATT TGGTCACTTG
    39. 

  39.     AAGTCATCAG ATTTTCTCGT TTATGGAATC AAATCAGTGG CTCAAGACGT
    40. 

  40.     CTTGCCCGTG TTGACTGATG CGTTTGATGG CAATCTTTTG AGCCTTGAGT
    41. 

  41.     TTGATAACTT TGCTGAAGTG CGCAAACTCT ATGAAGGTGG AGTTACACTA
    42. 

  42.     CCTACAAACT TTCTTAGCAA GATCGCCCCT ATACCAGTGG TCAAGGAAAT
    43. 

  43.     TTTTCGAACT GATGGCGAAC AGTTCCTCAA GTATCCACCA CCTAAAGTGA
    44. 

  44.     TGCAGGGTAT GCTACATATT TTGAATATGT AGAATATTAT CAATATACTC
    45. 

  45.     CTGTTTTTAT TCAACATATT TAATCACATG GATGAATTTT TGAACTGTTA
    46. 

  46.   protein: > 
    47. 

  47.     >gi|166477|gb|AAA96434.1| resveratrol synthase [Arachis hypogaea]
    48. 

  48.     MVSVSGIRKVQRAEGPATVLAIGTANPPNCIDQSTYADYYFRVTNSEHMTDLKKKFQRICERTQIKNRHM
    49. 

  49.     YLTEEILKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGV
    50. 

  50.     DYELIVLLGLDPCVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLV
    51. 

  51.     GQALFADGAAAIIIGSDPVPEVEKPIFELVSTDQKLVPGSHGAIGGLLREVGLTFYLNKSVPDIISQNIN
    52. 

  52.     DALNKAFDPLGISDYNSIFWIAHPGGRAILDQVEQKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLMR
    53. 

  53.     KRSLEEGLKTTGEGLDWGVLFGFGPGLTIETVVLRSVAI
    54. 

  54. 

  55. # LARGE JOBS CONFIGURATIONS:
    56. 

  56. tripal_blast_config_jobs:
    57. 

  57.   max_result: 500
    58. 

  58. 

  59. # VISUALIZATION CONFIGURATIONS:
    60. 

  60. tripal_blast_config_visualization:
    61. 

  61.   cvitjs_enabled: FALSE
    62. 

  62.   cvitjs_config: 
    63. 

  63. 

  64. # NOTIFICATION CONFIGURATIONS
    65. 

  65. tripal_blast_config_notification:
    66. 

  66.   warning_text:
    67.