tripal_blast/theme/blast_user_menupage.tpl.php

<?php

/**
 * @file
 *
 */

?>

<h1> BLAST Search </h1>
<p>
  Search for one or more of your sequences (using BLAST). First pick 
  a query type (nucleotide or protein). You will be able to set search 
  parameters on the next page.
</p>
<p>
  Choose the appropriate program based on the Query type and Target
  database type. Please click on the program name to view the search form.
<p>

<table>
  <tr>
    <th>Query Type</th>
    <th>Database Type</th>
    <th>BLAST Program</th>
  </tr>
  <tr>
    <td  rowspan="2">Nucleotide</td>
    <td>Nucleotide</td>
    <td><?php print l('blastn', './blast/nucleotide/nucleotide');?>:
      Search a nucleotide database using a nucleotide query.</td>
  </tr>
  <tr>
    <td>Protein</td>
    <td><?php print l('blastx', './blast/nucleotide/protein');?>:
      Search protein database using a translated nucleotide query.</td>
  </tr>
  <tr>
    <td  rowspan="2">Protein</td>
    <td>Nucleotide</td>
    <td><?php print l('tblastn', './blast/protein/nucleotide');?>:
      Search translated nucleotide database using a protein query.</td>
  </tr>
  <tr>
    <td>Protein</td>
    <td><?php print l('blastp', './blast/protein/protein');?>:
      Search protein database using a protein query.</td>
  </tr>
</table>