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- <?php
- namespace Tests\api;
- use StatonLab\TripalTestSuite\DBTransaction;
- use StatonLab\TripalTestSuite\TripalTestCase;
- class FilesTest extends TripalTestCase {
- // Uncomment to auto start and rollback db transactions per test method.
- use DBTransaction;
- /**
- * Tests convert_tsv2gff3().
- */
- public function testTSV2GFF3() {
- // Grab the paths for `
- $tsv_file = DRUPAL_ROOT . '/' . drupal_get_path('module','blast_ui') . '/tests/test_files/Citrus_sinensis-orange1.1g015632m.blastresults.tsv';
- $gff_file = DRUPAL_ROOT . '/' . drupal_get_path('module','blast_ui') . '/tests/test_files/Citrus_sinensis-orange1.1g015632m.blastresults.gff';
- $result_gff = file_directory_temp() . '/' . uniqid() . '.gff';
- convert_tsv2gff3($tsv_file, $result_gff);
- $this->assertFileExists($result_gff,
- "Unable to find resulting GFF3 file.");
- $this->assertEquals(file_get_contents($gff_file), file_get_contents($result_gff),
- "GFF files produced did not contain the expected results.");
- }
- }
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