node--blastdb.tpl.php 6.2 KB

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  1. <?php
  2. /**
  3. * @file
  4. * Bartik's theme implementation to display a node.
  5. *
  6. * Available variables:
  7. * - $title: the (sanitized) title of the node.
  8. * - $content: An array of node items. Use render($content) to print them all,
  9. * or print a subset such as render($content['field_example']). Use
  10. * hide($content['field_example']) to temporarily suppress the printing of a
  11. * given element.
  12. * - $user_picture: The node author's picture from user-picture.tpl.php.
  13. * - $date: Formatted creation date. Preprocess functions can reformat it by
  14. * calling format_date() with the desired parameters on the $created variable.
  15. * - $name: Themed username of node author output from theme_username().
  16. * - $node_url: Direct URL of the current node.
  17. * - $display_submitted: Whether submission information should be displayed.
  18. * - $submitted: Submission information created from $name and $date during
  19. * template_preprocess_node().
  20. * - $classes: String of classes that can be used to style contextually through
  21. * CSS. It can be manipulated through the variable $classes_array from
  22. * preprocess functions. The default values can be one or more of the
  23. * following:
  24. * - node: The current template type; for example, "theming hook".
  25. * - node-[type]: The current node type. For example, if the node is a
  26. * "Blog entry" it would result in "node-blog". Note that the machine
  27. * name will often be in a short form of the human readable label.
  28. * - node-teaser: Nodes in teaser form.
  29. * - node-preview: Nodes in preview mode.
  30. * The following are controlled through the node publishing options.
  31. * - node-promoted: Nodes promoted to the front page.
  32. * - node-sticky: Nodes ordered above other non-sticky nodes in teaser
  33. * listings.
  34. * - node-unpublished: Unpublished nodes visible only to administrators.
  35. * - $title_prefix (array): An array containing additional output populated by
  36. * modules, intended to be displayed in front of the main title tag that
  37. * appears in the template.
  38. * - $title_suffix (array): An array containing additional output populated by
  39. * modules, intended to be displayed after the main title tag that appears in
  40. * the template.
  41. *
  42. * Other variables:
  43. * - $node: Full node object. Contains data that may not be safe.
  44. * - $type: Node type; for example, story, page, blog, etc.
  45. * - $comment_count: Number of comments attached to the node.
  46. * - $uid: User ID of the node author.
  47. * - $created: Time the node was published formatted in Unix timestamp.
  48. * - $classes_array: Array of html class attribute values. It is flattened
  49. * into a string within the variable $classes.
  50. * - $zebra: Outputs either "even" or "odd". Useful for zebra striping in
  51. * teaser listings.
  52. * - $id: Position of the node. Increments each time it's output.
  53. *
  54. * Node status variables:
  55. * - $view_mode: View mode; for example, "full", "teaser".
  56. * - $teaser: Flag for the teaser state (shortcut for $view_mode == 'teaser').
  57. * - $page: Flag for the full page state.
  58. * - $promote: Flag for front page promotion state.
  59. * - $sticky: Flags for sticky post setting.
  60. * - $status: Flag for published status.
  61. * - $comment: State of comment settings for the node.
  62. * - $readmore: Flags true if the teaser content of the node cannot hold the
  63. * main body content.
  64. * - $is_front: Flags true when presented in the front page.
  65. * - $logged_in: Flags true when the current user is a logged-in member.
  66. * - $is_admin: Flags true when the current user is an administrator.
  67. *
  68. * Field variables: for each field instance attached to the node a corresponding
  69. * variable is defined; for example, $node->body becomes $body. When needing to
  70. * access a field's raw values, developers/themers are strongly encouraged to
  71. * use these variables. Otherwise they will have to explicitly specify the
  72. * desired field language; for example, $node->body['en'], thus overriding any
  73. * language negotiation rule that was previously applied.
  74. *
  75. * @see template_preprocess()
  76. * @see template_preprocess_node()
  77. * @see template_process()
  78. */
  79. ?>
  80. <div id="node-<?php print $node->nid; ?>" class="<?php print $classes; ?> clearfix"<?php print $attributes; ?>>
  81. <?php print render($title_prefix); ?>
  82. <?php if (!$page): ?>
  83. <h2<?php print $title_attributes; ?>>
  84. <a href="<?php print $node_url; ?>"><?php print $title; ?></a>
  85. </h2>
  86. <?php endif; ?>
  87. <?php print render($title_suffix); ?>
  88. <div class="content clearfix"<?php print $content_attributes; ?>>
  89. <?php
  90. // We hide the comments and links now so that we can render them later.
  91. hide($content['comments']);
  92. hide($content['links']);
  93. ?>
  94. <table>
  95. <tr><th>Human-Readable Name</th><td><?php print $node->db_name; ?></td></tr>
  96. <tr><th>Database Path</th><td><?php print $node->db_path; ?></td></tr>
  97. <tr><th>Database Type</th><td><?php print $node->db_dbtype; ?></td></tr>
  98. <?php if ($node->linkout->none === FALSE ) { ?>
  99. <tr><th>FASTA Header Format</th><td><?php print $node->linkout->regex_type; ?></td></tr>
  100. <tr><th>External Database</th><td><?php print $node->linkout->db_id->name; ?></td></tr>
  101. <tr><th>RegEx</th><td><?php print $node->linkout->regex; ?></td></tr>
  102. <tr><th>Link-out Type</th><td><?php print $node->linkout->type; ?></td></tr>
  103. <?php } ?>
  104. <tr><th>Whole Genome Viewer</th><td><?php print ($node->cvitjs_enabled) ? 'Enabled' : 'Disabled'; ?></td></tr>
  105. </table>
  106. <?php
  107. if ($node->cvitjs_enabled) {
  108. print '<h3>Whole Genome Viewer</h3>';
  109. $conf_section = blast_ui_get_cvit_conf_text('data.'.$node->db_name);
  110. if (!$conf_section) {
  111. print '<div class="messages warning">There is no section for this genome target defined in the CViTjs
  112. configuration file. <strong>No genome visualization will be shown until you define a
  113. configuration section, "[data.'.$form_state['values']['db_name'].']", at '
  114. .l('Admin > Tripal > Extensions > Tripal BLAST > BLAST UI', 'admin/tripal/extension/tripal_blast')
  115. .'</strong>.</div>';
  116. }
  117. else {
  118. print '<h4>Configuration</h4>'
  119. . '<pre>'.$conf_section.'</pre>';
  120. }
  121. }
  122. ?>
  123. <?php
  124. // Add in any remaining content
  125. print render($content);
  126. ?>
  127. </div>
  128. </div>