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Lacey-Anne Sanderson 4a8bbd8e6b Merge pull request #61 from tripal/phpunit-action 3 years ago
.github edcf263737 don't copy imaginary files. 3 years ago
docs 7623da2db1 Update jbrowse management for registering instances. 4 years ago
tests 0af9f5dc66 Make sure test property keys are unique. 3 years ago
tripal_jbrowse fc79b595b4 Document upgrade path for Tripal JBrowse nodes. 4 years ago
tripal_jbrowse_mgmt 663c751749 Add support for gff3 file extension 3 years ago
tripal_jbrowse_page 599a3d77c5 Bug Fix: Path definition now includes the id. 4 years ago
.gitignore 325fc5c26b Add Instance CRUD tests for tripal_jbrowse_mgmt 5 years ago
LICENSE.txt 999b554eab Create LICENSE.txt 5 years ago
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composer.lock ff30d619b5 Removed config for menu items; made all menu items suggestions. 4 years ago
phpunit.xml 325fc5c26b Add Instance CRUD tests for tripal_jbrowse_mgmt 5 years ago

README.md

PHPUnit GitHub release (latest by date) Documentation Status

DOI

Tripal JBrowse Integration

This package of modules integrates GMOD JBrowse into your Tripal site providing

  • Tripal page integration via Tripal JBrowse Page and
  • a user interface for JBrowse instance creation and management via Tripal JBrowse Management.

This powerful combination allows you to provide seamless genome browsing to your users in an administrator-friendly manner.

Quick Start

  1. Download and install JBrowse in a web accessible location (e.g. DRUPAL_ROOT/tools/jbrowse).
  2. Download and unpack this package in your Drupal modules directory (i.e sites/all/modules).
  3. Enable "Tripal JBrowse Management" submodule through http://[your site]/admin/modules.
  4. Create a JBrowse instance for your species of interest using the Admin > Tripal > Tripal JBrowse Management user interface.
  5. Enable "Tripal-JBrowse Page Integration" submodule through http://[your site]/admin/modules.
  6. Embedded versions will be created for all your instances created in step 4.

Documentation

Please visit our online documentation to learn more about installation, usage and features.

License & Acknowledgements

This module is open-source and licensed under GPLv3. Read full license.

Authors:

Copyright 2018 University of Saskatchewan and University of Tennessee Knoxville.

Citation:

Lacey-Anne Sanderson, Abdullah Almsaeed, Joe West, & Yichao Shen. (2019). tripal/tripal_jbrowse: Tripal JBrowse 3.0 (Version 7.x-3.0). Zenodo. http://doi.org/10.5281/zenodo.3564724.