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+<?php
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+namespace Tests\tripal_jbrowse_mgmt;
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+
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+use StatonLab\TripalTestSuite\DBTransaction;
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+use StatonLab\TripalTestSuite\TripalTestCase;
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+use Faker\Factory;
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+
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+class ApiTest extends TripalTestCase {
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+ // Uncomment to auto start and rollback db transactions per test method.
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+ use DBTransaction;
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+
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+ /**
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+ * Tests the Settings API.
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+ *
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+ * Specifically tripal_jbrowse_mgmt_save_settings()
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+ * and tripal_jbrowse_mgmt_get_settings().
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+ *
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+ * @dataProvider settingsProvider
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+ */
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+ public function testSettings($test_settings) {
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+
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+ tripal_jbrowse_mgmt_save_settings($test_settings);
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+ $retrieved = tripal_jbrowse_mgmt_get_settings();
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+
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+ // Check that all the expected settings are available.
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+ $expected = ['bin_path', 'link', 'data_dir', 'menu_template'];
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+ foreach ($expected as $expected_key) {
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+ $this->assertArrayHasKey($expected_key, $retrieved,
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+ "Retrieved settings do not contain $expected_key");
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+
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+ // Check that the settings match if provided in test.
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+ if (isset($test_settings[$expected_key])) {
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+ $this->assertEquals(
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+ $test_settings[$expected_key],
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+ $retrieved[$expected_key],
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+ "The retrieved value for $expected_key does not match what we set."
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+ );
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+ }
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+ }
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+ }
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+ // Associated Data Provider for testing settings.
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+ public function settingsProvider() {
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+ $faker = Factory::create();
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+ $sets = [];
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+
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+ // No settings.
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+ $sets[] = [[]];
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+
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+ // Full Fake Settings.
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+ $sets[] = [[
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+ 'bin_path' => 'test/fake/path',
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+ 'link' => 'test/fake/path',
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+ 'data_dir' => 'test/fake/path',
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+ 'menu_template' => [],
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+ ]];
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+
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+ return $sets;
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+ }
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+
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+ /**
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+ * Test Instance Create-Retrieve-Update-Delete.
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+ *
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+ * @dataProvider instanceProvider
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+ */
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+ public function testInstanceCRUD($testdata) {
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+ putenv("TRIPAL_SUPPRESS_ERRORS=TRUE");
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+
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+ // Check we cannot create a JBrowse instance without an organism.
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+ $noOrganism = $testdata;
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+ unset($noOrganism['organism_id']);
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+ $id = tripal_jbrowse_mgmt_create_instance($noOrganism);
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+ $this->assertFalse($id,
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+ "Created an instance without an organism_id!?!");
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+
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+ // Now try to create an instance with all the data.
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+ $id = tripal_jbrowse_mgmt_create_instance($testdata);
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+ $this->assertNotFalse($id,
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+ "Unable to create instance.");
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+
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+ // Try to retrieve the instance we just created.
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+ $retrieved_instance = tripal_jbrowse_mgmt_get_instance($id);
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+ $this->assertNotFalse($id, "We did not retrieve an instance?");
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+ $this->assertEquals($id, $retrieved_instance->id,
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+ "We retrieved a different instance then we asked for?");
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+ $this->assertEquals(
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+ $testdata['organism_id'], $retrieved_instance->organism_id,
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+ "Retreived the same instance but the organism is not correct?");
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+
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+ // Change the title and test the instance was updated.
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+ $new_title = $testdata;
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+ $testdata['title'] = 'NEW FAKE TITLE ' . uniqid();
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+ $success = tripal_jbrowse_mgmt_update_instance($id, $new_title);
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+ $this->assertNotFalse($success, 'Unable to update instance title.');
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+ $retrieved_instance = tripal_jbrowse_mgmt_get_instance($id);
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+ $this->assertEquals(
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+ $new_title['title'], $retrieved_instance->title,
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+ "The title was not updated.");
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+
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+ // Finally delete him!
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+ $success = tripal_jbrowse_mgmt_delete_instance($retrieved_instance);
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+ $this->assertNotFalse($success, 'Unable to delete this instance.');
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+ $one_more_time = tripal_jbrowse_mgmt_get_instance($id);
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+ $this->assertFalse($one_more_time);
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+
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+ putenv("TRIPAL_SUPPRESS_ERRORS");
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+ }
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+ // Associated Data Provider for testing instances.
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+ public function instanceProvider() {
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+ $faker = Factory::create();
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+ $sets = [];
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+
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+ $organism = factory('chado.organism')->create();
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+
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+ // Full Fake Instance Details.
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+ $sets[] = [[
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+ 'organism_id' => $organism->organism_id,
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+ 'title' => $faker->words(3, TRUE),
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+ 'description' => $faker->sentence(25, TRUE),
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+ 'created_at' => $faker->unixTime(),
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+ 'file' => '/path/to/fake/file',
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+ ]];
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+
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+ return $sets;
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+ }
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+
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+}
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Lacey Sanderson