 dsenalik
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663c751749
Add support for gff3 file extension
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4 years ago |
 Jiu9Shen
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1e86318ea0
remove dpm testing lines
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4 years ago |
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Jiu9Shen
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593e936771
fix issue realted to creating symlink, also make it selected as default
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4 years ago |
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Jiu9Shen
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4f445c08c3
fix issue of alignment track cannot display
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4 years ago |
 Lacey Sanderson
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c5045a0ccc
Ensure bam/cram submits and job adds it to JBrowse.
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4 years ago |
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Jiu9Shen
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b0d5e7eeb8
change file validate/upload of folder to a function
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4 years ago |
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Jiu9Shen
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a60cf92b85
include new file type and track type in track file.
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4 years ago |
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Jiu9Shen
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2a460cd39c
include alignment tracks bam and cram in commands
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4 years ago |
 Lacey Sanderson
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f875c78f65
Add analysis and description to the embedded page.
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4 years ago |
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Jiu9Shen
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3d87a19701
allow multiple tracks with same file by selecting Symbolic Link, also update warning messages
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4 years ago |
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Jiu9Shen
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c67c594b61
Merge branch '7.x-3.x' into 35-multiple_jbrowses_41organism
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4 years ago |
|
Jiu9Shen
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9a2dc41c65
fix bug of analysis strings are not parsed in validation
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4 years ago |
|
Jiu9Shen
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af944f8ce9
ready for more tests on more sites
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4 years ago |
 Yichao Shen
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7f0c85159e
add analysis name in instance table, need a better description for analysis in Create nextY
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4 years ago |
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Jiu9Shen
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d04f147763
fixed issues of cannot find right path for tracks. Need more tests.
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4 years ago |
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Jiu9Shen
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4f045ca519
Achieved multiple instance for one organism, still need to parse analysis properly and more test.
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4 years ago |
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Lacey Sanderson
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f74597d6fc
Bug fixes to instance manage tracks page.
|
5 years ago |
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Jiu9Shen
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8ddc57f761
add option of Symbolic Link for Track File upload for Management. Functionality has tested on local drupal site.
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5 years ago |
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Lacey Sanderson
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6b8038ff4f
More testing.
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5 years ago |
|
Lacey Sanderson
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325fc5c26b
Add Instance CRUD tests for tripal_jbrowse_mgmt
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5 years ago |
|
Lacey Sanderson
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5d2c2b2678
Small bug fix.
|
5 years ago |
|
Lacey-Anne Sanderson
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4a394286b8
Merge branch '7.x-3.x' into first-steps-merger
|
5 years ago |
|
Lacey Sanderson
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27e8dde49b
Fix assumption in URL generation that data directory is within JBrowse directory.
|
5 years ago |
|
Lacey Sanderson
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df2bc06121
Use new properties in launch URL.
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5 years ago |
|
Lacey Sanderson
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5cb2d869b3
Save and retrieve instance properties.
|
5 years ago |
 Abdullah Almsaeed
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579afa9adc
Add better form error handeling in track form
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5 years ago |
|
Abdullah Almsaeed
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fac3b1ef11
Remove repeated instance DB query
|
5 years ago |
|
Abdullah Almsaeed
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ca7f1128bb
Fix a typo where the file given to the add track command was wrong
|
5 years ago |
|
Abdullah Almsaeed
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fa499e77de
Remove mentions of hardwoods
|
6 years ago |
|
Abdullah Almsaeed
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ebc1a182d3
Remove git
|
6 years ago |
