 Jiu9Shen
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95e9353c39
fix issue of vcf files not copied to right sub-dir
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4 years ago |
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Jiu9Shen
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593e936771
fix issue realted to creating symlink, also make it selected as default
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4 years ago |
 Lacey Sanderson
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c5045a0ccc
Ensure bam/cram submits and job adds it to JBrowse.
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4 years ago |
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Lacey Sanderson
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dd009f397d
Ensure directory/index are shown for bam/cram.
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4 years ago |
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Jiu9Shen
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b0d5e7eeb8
change file validate/upload of folder to a function
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4 years ago |
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Jiu9Shen
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a60cf92b85
include new file type and track type in track file.
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4 years ago |
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Jiu9Shen
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2a460cd39c
include alignment tracks bam and cram in commands
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4 years ago |
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Jiu9Shen
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3d87a19701
allow multiple tracks with same file by selecting Symbolic Link, also update warning messages
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4 years ago |
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Jiu9Shen
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1bfb386d40
fix issue related to instance links, tested on local, need more tests
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4 years ago |
 Lacey-Anne Sanderson
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d3834a31b4
Merge pull request #43 from Jiu9Shen/35-multiple_jbrowses_41organism
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4 years ago |
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Lacey-Anne Sanderson
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0ae800693d
Merge pull request #44 from Jiu9Shen/40-textfileld_maxlength_change
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4 years ago |
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Jiu9Shen
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c67c594b61
Merge branch '7.x-3.x' into 35-multiple_jbrowses_41organism
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4 years ago |
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Lacey-Anne Sanderson
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c07d84f304
Merge pull request #41 from Jiu9Shen/38-track_manage_edit_json
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4 years ago |
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Jiu9Shen
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705f91f2dd
fix issues(move file to wrong dest and wrong label in json) related to bigwig track creation
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4 years ago |
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Jiu9Shen
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af944f8ce9
ready for more tests on more sites
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4 years ago |
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Jiu9Shen
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d04f147763
fixed issues of cannot find right path for tracks. Need more tests.
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4 years ago |
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Jiu9Shen
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c68fa8b843
track key or lable change is checked in form validation now, give warning if there is change
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5 years ago |
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Yichao Shen
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06fad0df82
Update tripal_jbrowse_mgmt/includes/tripal_jbrowse_mgmt_tracks.form.inc
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5 years ago |
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Yichao Shen
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d096917b42
Update tripal_jbrowse_mgmt/includes/tripal_jbrowse_mgmt_tracks.form.inc
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5 years ago |
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Jiu9Shen
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b32a76f047
fix a bug related to track key/label
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5 years ago |
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Jiu9Shen
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6dda51be4e
add maxlength = 255 to several textfields
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5 years ago |
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Jiu9Shen
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2a9d7cfa29
change instruction message
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5 years ago |
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Jiu9Shen
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a17591b196
delete test lines, should be ready for review.
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5 years ago |
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Jiu9Shen
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fcef351b97
json editor of whole configuration of a track works, need more tests
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5 years ago |
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Lacey-Anne Sanderson
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43dee33963
Merge pull request #37 from Jiu9Shen/34-modify_add_vcf_track
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5 years ago |
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Yichao Shen
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5576c1c88f
Update tripal_jbrowse_mgmt/includes/tripal_jbrowse_mgmt_tracks.form.inc
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5 years ago |
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Jiu9Shen
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caf79b9f9d
Delete test lines, also fix the issue of can not delete vcf track from json file.
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5 years ago |
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Jiu9Shen
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f48d5889c1
Include csi and idx index formats for vcf tracks.
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5 years ago |
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Jiu9Shen
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8ddc57f761
add option of Symbolic Link for Track File upload for Management. Functionality has tested on local drupal site.
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5 years ago |
 Abdullah Almsaeed
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88ba171f61
Add a base path for the tracks data dir
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5 years ago |
