 Lacey Sanderson
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e57f041fda
Add permission to view excluded embedded pages.
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5 rokov pred |
 Lacey-Anne Sanderson
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30be1232d9
Merge pull request #58 from tripal/46-alignments
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5 rokov pred |
 Jiu9Shen
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95e9353c39
fix issue of vcf files not copied to right sub-dir
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5 rokov pred |
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Jiu9Shen
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50ceb5a1b5
fix issue of json not configered properly
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5 rokov pred |
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Jiu9Shen
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76e44d3840
include csi as one index format for alignment track, also edit json
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5 rokov pred |
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Jiu9Shen
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1e86318ea0
remove dpm testing lines
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5 rokov pred |
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Jiu9Shen
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593e936771
fix issue realted to creating symlink, also make it selected as default
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5 rokov pred |
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Jiu9Shen
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4f445c08c3
fix issue of alignment track cannot display
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5 rokov pred |
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Lacey Sanderson
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c5045a0ccc
Ensure bam/cram submits and job adds it to JBrowse.
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5 rokov pred |
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Lacey Sanderson
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dd009f397d
Ensure directory/index are shown for bam/cram.
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5 rokov pred |
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Lacey-Anne Sanderson
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fa102c744b
Merge pull request #57 from Jiu9Shen/46-alignment_tracks
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5 rokov pred |
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Jiu9Shen
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b0d5e7eeb8
change file validate/upload of folder to a function
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5 rokov pred |
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Jiu9Shen
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a60cf92b85
include new file type and track type in track file.
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5 rokov pred |
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Jiu9Shen
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2a460cd39c
include alignment tracks bam and cram in commands
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5 rokov pred |
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Lacey-Anne Sanderson
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36481dfe83
Merge pull request #55 from tripal/issue51
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5 rokov pred |
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Lacey-Anne Sanderson
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0d0b29bd91
Merge pull request #54 from tripal/issue51
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5 rokov pred |
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Lacey Sanderson
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0c6b875de4
Switch Analysis => Sequence Assembly for page integration admin.
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5 rokov pred |
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Yichao Shen
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af73bd9eca
Merge pull request #53 from tripal/issue52
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5 rokov pred |
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Lacey Sanderson
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497a4c5182
Change analysis to sequence assembly to provide more guidance.
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5 rokov pred |
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Lacey Sanderson
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aedbd51de5
Make analysis a link in the public listing.
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5 rokov pred |
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Lacey Sanderson
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f875c78f65
Add analysis and description to the embedded page.
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5 rokov pred |
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Lacey-Anne Sanderson
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d0365208e4
Merge pull request #50 from Jiu9Shen/45-create_track_w_exist_file
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5 rokov pred |
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Jiu9Shen
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3d87a19701
allow multiple tracks with same file by selecting Symbolic Link, also update warning messages
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5 rokov pred |
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Lacey-Anne Sanderson
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c8c7b60dc6
Merge pull request #48 from Jiu9Shen/47_fix_links_in_page_list
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5 rokov pred |
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Jiu9Shen
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81c4f4ecae
fix wrong use of page arguments
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5 rokov pred |
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Jiu9Shen
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d646f19253
make url backward compatible
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5 rokov pred |
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Yichao Shen
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5e76f37e0e
Update tripal_jbrowse_page/includes/tripal_jbrowse_page.page.inc
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5 rokov pred |
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Jiu9Shen
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1bfb386d40
fix issue related to instance links, tested on local, need more tests
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5 rokov pred |
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Lacey-Anne Sanderson
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d3834a31b4
Merge pull request #43 from Jiu9Shen/35-multiple_jbrowses_41organism
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5 rokov pred |
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Jiu9Shen
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4cb33a91a7
fix analysis problem for tripal_jbrowse_page, and warnings
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5 rokov pred |
