title JBrowse"); $breadcrumb = array(); $breadcrumb[] = l('Home', ''); $breadcrumb[] = l('Administration', 'admin'); $breadcrumb[] = l('Tripal', 'admin/tripal'); $breadcrumb[] = l('Extensions', 'admin/tripal/extension'); $breadcrumb[] = l('Tripal JBrowse', 'admin/tripal/extension/tripal_jbrowse/management'); drupal_set_breadcrumb($breadcrumb); $content = []; $content['instance_table'] = [ '#type' => 'markup', '#markup' => theme( 'table', [ 'header' => ['Key', 'Value'], 'rows' => [ ['Instance Name', $instance->title], ['Analysis Name', $instance->analysis->name], ['Created At', date('m/d/Y', $instance->created_at)], [ 'Organism', "{$instance->organism->genus} {$instance->organism->species}", ], ['Created By', $instance->user->name], [ 'Launch', l( 'See ' . $instance->title . ' on JBrowse', $settings['link'], ['query' => tripal_jbrowse_mgmt_build_http_query($instance)] ), ], ], ] ), ]; $tracks = tripal_jbrowse_mgmt_get_tracks($instance, ['is_deleted' => 0]); $content['tracks_title'] = [ '#type' => 'item', '#markup' => '

Tracks

', ]; if (empty($tracks)) { $content['no_tracks'] = [ '#type' => 'item', '#markup' => 'No tracks found for this instance. Please use the add tracks link above to add new tracks.', ]; } else { $rows = array_map( function ($track) { return [ $track->label, $track->track_type, $track->file_type, $track->user->name, date('m/d/Y', $track->created_at), l('Manage Track', 'admin/tripal/extension/tripal_jbrowse/management/tracks/' . $track->id), l( 'Delete Track', 'admin/tripal/extension/tripal_jbrowse/management/tracks/' . $track->id . '/delete' ), ]; }, $tracks ); $content['tracks_table'] = [ '#type' => 'markup', '#markup' => theme( 'table', [ 'header' => [ 'Label', 'Track Type', 'File Type', 'Created By', 'Created At', 'Manage', 'Delete Track', ], 'rows' => $rows, ] ), ]; } return $content; }