title JBrowse");
$content = [];
$content['instance_table'] = [
'#type' => 'markup',
'#markup' => theme(
'table',
[
'header' => ['Key', 'Value'],
'rows' => [
['Instance Name', $instance->title],
['Created At', date('m/d/Y', $instance->created_at)],
[
'Organism',
"{$instance->organism->genus} {$instance->organism->species}",
],
['Created By', $instance->user->name],
[
'Launch',
l(
'See ' . $instance->title . ' on JBrowse',
$settings['link'],
['query' => tripal_jbrowse_mgmt_build_http_query($instance)]
),
],
],
]
),
];
$tracks = tripal_jbrowse_mgmt_get_tracks($instance, ['is_deleted' => 0]);
$content['tracks_title'] = [
'#type' => 'item',
'#markup' => '
Tracks
',
];
if (empty($tracks)) {
$content['no_tracks'] = [
'#type' => 'item',
'#markup' => 'No tracks found for this instance. Please use the add tracks link above to add new tracks.',
];
}
else {
$rows = array_map(
function ($track) {
return [
$track->label,
$track->track_type,
$track->file_type,
$track->user->name,
date('m/d/Y', $track->created_at),
l('Manage Track', 'admin/tripal_jbrowse_mgmt/tracks/' . $track->id),
l(
'Delete Track',
'admin/tripal_jbrowse_mgmt/tracks/' . $track->id . '/delete'
),
];
},
$tracks
);
$content['tracks_table'] = [
'#type' => 'markup',
'#markup' => theme(
'table',
[
'header' => [
'Label',
'Track Type',
'File Type',
'Created By',
'Created At',
'Manage',
'Delete Track',
],
'rows' => $rows,
]
),
];
}
return $content;
}